Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008316
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124229.1| 3-hydroxyacyl-CoA dehydratase 2 [Bos taurus]. 451 e-127
Alignment gi|XP_002692150.1| PREDICTED: protein tyrosine phosphatase-like... 315 3e-86
Alignment gi|XP_872023.2| PREDICTED: protein tyrosine phosphatase-like, m... 315 3e-86
Alignment gi|NP_001096786.1| 3-hydroxyacyl-CoA dehydratase 3 [Bos taurus]. 112 5e-25
Alignment gi|NP_001069990.1| 3-hydroxyacyl-CoA dehydratase 4 [Bos taurus]. 97 2e-20
>ref|NP_001124229.1| 3-hydroxyacyl-CoA dehydratase 2 [Bos taurus].
Length = 254
Score = 451 bits (1159), Expect = e-127
Identities = 223/244 (91%), Positives = 229/244 (93%)
Frame = +3
Query: 93 KGNXXXXXXXXXXXASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY 272
KGN AS SR+KKGPGPL TAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY
Sbjct: 11 KGNGGGGGRAGAGEASSSRRKKGPGPLTTAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY 70
Query: 273 HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS 452
HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTS QVMSRVFLIWAVTHSVKEVQS
Sbjct: 71 HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSIQVMSRVFLIWAVTHSVKEVQS 130
Query: 453 EDSVLLFVVAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAA 632
EDSVLLFV+AWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLT+YAA
Sbjct: 131 EDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAA 190
Query: 633 LPFVRQAGLYSISLPNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVLSHTEEH 812
LPFVRQAGLYSISLPNKYNFSFDYY FLIL+MISYIP+FPQLYFHMIHQRRK+LSHTEEH
Sbjct: 191 LPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPLFPQLYFHMIHQRRKILSHTEEH 250
Query: 813 KKFE 824
KKFE
Sbjct: 251 KKFE 254
>ref|XP_002692150.1| PREDICTED: protein tyrosine phosphatase-like, member A-like [Bos
taurus].
Length = 288
Score = 315 bits (808), Expect = 3e-86
Identities = 143/215 (66%), Positives = 182/215 (84%)
Frame = +3
Query: 150 KKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGAL 329
K++ G LAT +L YN+ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFFQT AL
Sbjct: 64 KRRRLGLLATIWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYRSIQKTLKFFQTFAL 123
Query: 330 LEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRY 509
LEI+HC IGIVP+SV++ QV SR+F++W VTHS+K +Q+E+SV+LF+VAWT+TEI RY
Sbjct: 124 LEIVHCLIGIVPTSVLVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEITRY 183
Query: 510 SFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYN 689
SFYTFSLL+HLPY IKWARY FI+LYP+GV+GELLT+YAALP+V++ G++SI LPNKYN
Sbjct: 184 SFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPYVKKTGMFSIRLPNKYN 243
Query: 690 FSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVL 794
SFDYY FL++ M SYIP+FPQLYFHM+ QRRKVL
Sbjct: 244 VSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 278
>ref|XP_872023.2| PREDICTED: protein tyrosine phosphatase-like, member A-like [Bos
taurus].
Length = 288
Score = 315 bits (808), Expect = 3e-86
Identities = 143/215 (66%), Positives = 182/215 (84%)
Frame = +3
Query: 150 KKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGAL 329
K++ G LAT +L YN+ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFFQT AL
Sbjct: 64 KRRRLGLLATIWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYRSIQKTLKFFQTFAL 123
Query: 330 LEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRY 509
LEI+HC IGIVP+SV++ QV SR+F++W VTHS+K +Q+E+SV+LF+VAWT+TEI RY
Sbjct: 124 LEIVHCLIGIVPTSVLVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEITRY 183
Query: 510 SFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYN 689
SFYTFSLL+HLPY IKWARY FI+LYP+GV+GELLT+YAALP+V++ G++SI LPNKYN
Sbjct: 184 SFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPYVKKTGMFSIRLPNKYN 243
Query: 690 FSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVL 794
SFDYY FL++ M SYIP+FPQLYFHM+ QRRKVL
Sbjct: 244 VSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 278
>ref|NP_001096786.1| 3-hydroxyacyl-CoA dehydratase 3 [Bos taurus].
Length = 362
Score = 112 bits (280), Expect = 5e-25
Identities = 66/212 (31%), Positives = 114/212 (53%), Gaps = 6/212 (2%)
Frame = +3
Query: 171 LATAYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 344
L YL +YN+V G W+ + + + L K S++ ++++ + F Q A +E ++
Sbjct: 145 LKKGYLFMYNLVQFLGFSWIFVNMTVRFFILGKESFYDTFHTVADMMYFCQMLAAVESIN 204
Query: 345 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTF 524
AIG+ S VV + FQ++ R F+++ + +++E+Q++ V W+ EI RY FY
Sbjct: 205 AAIGVTKSPVVPSLFQLLGRNFILFIIFGTMEEMQNKAVVFFVFYIWSTVEIFRYPFYML 264
Query: 525 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPN----KYNF 692
S ++ ++ W RYT++I LYPMG E ++V ++P + G +S +LP K F
Sbjct: 265 SCIDMDWKVLTWLRYTVWIPLYPMGCLAEAVSVIQSIPVFNETGRFSFTLPYPVKIKVRF 324
Query: 693 SFDYYTFLILMMISYIPIFPQLYFHMIHQRRK 788
SF +LIL+ + F LY QRR+
Sbjct: 325 SFFLQIYLILLFLGLYVNFRYLY----KQRRR 352
>ref|NP_001069990.1| 3-hydroxyacyl-CoA dehydratase 4 [Bos taurus].
Length = 231
Score = 97.4 bits (241), Expect = 2e-20
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 5/218 (2%)
Frame = +3
Query: 180 AYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAI 353
AYL IY ++ G W+ + + K S +Y+I ++ Q+ +LLE+LH +
Sbjct: 18 AYLFIYYLIQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMQLCQSISLLELLHIYV 77
Query: 354 GIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLL 533
GI + ++ Q+ R+ +++ V S +EVQ + V + + + +++RY++ S++
Sbjct: 78 GIESNHLLPRILQLTERIIVLFMVITSQEEVQEKYVVCVLFIFRNLLDMVRYTYSMLSVI 137
Query: 534 NHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTF 713
++ W TL++ +YP+ V E T+Y +LP+ G YS LP +F F Y
Sbjct: 138 GISYAVLTWFSQTLWMPIYPLCVLAEAFTIYQSLPYFESFGTYSTKLPFDLSFYFPYVLK 197
Query: 714 LILMMISYIPIFPQLYF---HMIHQRRKVLSHTEEHKK 818
+ LMM +F +YF H+ +RR +L KK
Sbjct: 198 IYLMM-----LFVGMYFTYNHLYSERRDILRVFPNKKK 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,020,514
Number of extensions: 887427
Number of successful extensions: 2912
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2867
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008316
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850968.1| PREDICTED: similar to protein tyrosine phosphat... 402 e-112
Alignment gi|NP_001020440.1| 3-hydroxyacyl-CoA dehydratase 1 [Canis lupus... 314 7e-86
Alignment gi|XP_535518.2| PREDICTED: similar to butyrate-induced transcri... 107 2e-23
Alignment gi|XP_854086.1| PREDICTED: similar to CG9267-PA [Canis familiar... 101 1e-21
>ref|XP_850968.1| PREDICTED: similar to protein tyrosine phosphatase-like (proline
instead of catalytic arginine), member b [Canis
familiaris].
Length = 216
Score = 402 bits (1033), Expect = e-112
Identities = 197/202 (97%), Positives = 201/202 (99%)
Frame = +3
Query: 219 WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVM 398
WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCA+GIVPSSVVLTSFQVM
Sbjct: 15 WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAVGIVPSSVVLTSFQVM 74
Query: 399 SRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLF 578
SRVFLIWAVTHSVKEVQSEDSVLLFV+AWTITEIIRYSFYTFSLLNHLPYLIKWARYTLF
Sbjct: 75 SRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLF 134
Query: 579 IVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTFLILMMISYIPIFPQL 758
IVLYPMGVSGELLT+YAALPFVRQAGLYSISLPNKYNFSFDYY FLIL+MISYIPIFPQL
Sbjct: 135 IVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQL 194
Query: 759 YFHMIHQRRKVLSHTEEHKKFE 824
YFHMIHQRRKVLSHTEEHKKFE
Sbjct: 195 YFHMIHQRRKVLSHTEEHKKFE 216
>ref|NP_001020440.1| 3-hydroxyacyl-CoA dehydratase 1 [Canis lupus familiaris].
Length = 249
Score = 314 bits (805), Expect = 7e-86
Identities = 144/220 (65%), Positives = 183/220 (83%)
Frame = +3
Query: 135 ASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFF 314
A G R++ G LAT +L YN+ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFF
Sbjct: 22 APGRRRRLGL--LATVWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFF 79
Query: 315 QTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTIT 494
QT ALLEI+HC IGIVP+SV++ QV SR+F++W +THS+K +Q+E+SV+LF+VAWT+T
Sbjct: 80 QTFALLEIVHCLIGIVPTSVIVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVT 139
Query: 495 EIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISL 674
EI RYSFYTFSLL+HLPY IKWARY FI+LYP+GV GELLT+YAALP+V++ G++SI L
Sbjct: 140 EITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVVGELLTIYAALPYVKKTGMFSIRL 199
Query: 675 PNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVL 794
PNKYN SFDYY FL++ M SYIP+FPQLYFHM+ QRRKVL
Sbjct: 200 PNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 239
>ref|XP_535518.2| PREDICTED: similar to butyrate-induced transcript 1 [Canis
familiaris].
Length = 362
Score = 107 bits (266), Expect = 2e-23
Identities = 60/212 (28%), Positives = 114/212 (53%), Gaps = 6/212 (2%)
Frame = +3
Query: 171 LATAYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 344
L YL +YN+V G W+ + + + L K S++ ++++ + F Q +++E ++
Sbjct: 145 LKKGYLFMYNLVQFLGFSWIFVNMTVRFFILGKESFYDTFHTLADMMYFCQMLSVVETIN 204
Query: 345 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTF 524
AIG+ S V+ Q++ R F+++ + +++E+Q++ V +W+ E+ RY FY
Sbjct: 205 AAIGVTKSPVIPCLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYSWSAVEVFRYPFYML 264
Query: 525 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPN----KYNF 692
S ++ ++ W RYT++I LYP+G E ++V ++P + G +S +LP K F
Sbjct: 265 SCIDMDWKVLTWLRYTVWIPLYPLGCLAEAVSVIQSIPVFNETGRFSFTLPYPVKIKVRF 324
Query: 693 SFDYYTFLILMMISYIPIFPQLYFHMIHQRRK 788
SF +LI++ + F LY QRR+
Sbjct: 325 SFFLQIYLIILFLGLYINFRHLY----KQRRR 352
>ref|XP_854086.1| PREDICTED: similar to CG9267-PA [Canis familiaris].
Length = 229
Score = 101 bits (252), Expect = 1e-21
Identities = 60/216 (27%), Positives = 111/216 (51%), Gaps = 2/216 (0%)
Frame = +3
Query: 177 TAYLVIYNVVMTAGWLVIAVGLVRAYLAKG--SYHSLYYSIEKPLKFFQTGALLEILHCA 350
+ YL IY ++ G I + + + G S +Y+I ++ Q+ +LLE+LH
Sbjct: 14 STYLFIYYLIQFCGHSWIFTNMTVRFFSFGEDSMVDTFYAIGLVMRLCQSISLLELLHIC 73
Query: 351 IGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSL 530
+GI P+ ++ Q+ R+ +++ V S +EVQ + V + + W + +++RY++ S+
Sbjct: 74 LGIEPNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFIFWNLLDMVRYTYSMLSV 133
Query: 531 LNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYT 710
+ ++ W TL++ +YP+ V E +Y +LP+ G YS LP + F Y
Sbjct: 134 IGISYAVLTWLSQTLWMPIYPLCVLAEAFAIYQSLPYFESFGTYSTKLPFDLSIYFPYVL 193
Query: 711 FLILMMISYIPIFPQLYFHMIHQRRKVLSHTEEHKK 818
+ LMM+ +I ++ Y H+ +RR VL KK
Sbjct: 194 KIYLMML-FIGMY-YTYSHLYSERRDVLRVCPMKKK 227
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,031,796
Number of extensions: 834444
Number of successful extensions: 2485
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2464
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008316
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130771.2| PREDICTED: 3-hydroxyacyl-CoA dehydratase 1-l... 317 7e-87
Alignment gi|XP_003361507.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 1-l... 293 1e-79
Alignment gi|XP_003121777.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 3 i... 104 7e-23
Alignment gi|XP_001929169.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 3 i... 104 7e-23
Alignment gi|XP_003121932.1| PREDICTED: LOW QUALITY PROTEIN: 3-hydroxyacy... 96 3e-20
>ref|XP_003130771.2| PREDICTED: 3-hydroxyacyl-CoA dehydratase 1-like, partial [Sus
scrofa].
Length = 241
Score = 317 bits (812), Expect = 7e-87
Identities = 145/220 (65%), Positives = 186/220 (84%)
Frame = +3
Query: 135 ASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFF 314
A+G R++ G LAT +L YN+ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFF
Sbjct: 14 AAGKRRRLGL--LATTWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHVGLYKSIQKTLKFF 71
Query: 315 QTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTIT 494
QT ALLEI+HC IGIVP+SV++ QV SR+F++W VTHS+K +Q+E+SV+LF+VAWT+T
Sbjct: 72 QTFALLEIVHCLIGIVPTSVLVVGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVT 131
Query: 495 EIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISL 674
EI RYSFYTFSLL+HLPY IKWARY FI+LYP+GV+GELLT+YAALP+V++ G++SI L
Sbjct: 132 EITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPYVKKTGMFSIRL 191
Query: 675 PNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVL 794
PNKYN SFDYY FL++ M+SYIP+FPQLYFHM+ QRRKVL
Sbjct: 192 PNKYNVSFDYYYFLLITMVSYIPLFPQLYFHMLRQRRKVL 231
>ref|XP_003361507.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 1-like [Sus scrofa].
Length = 227
Score = 293 bits (749), Expect = 1e-79
Identities = 131/192 (68%), Positives = 167/192 (86%)
Frame = +3
Query: 219 WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVM 398
WLV+A+ +VR Y+ KG++ LY SI+K LKFFQT ALLEI+HC IGIVP+SV++ QV
Sbjct: 26 WLVLAIAMVRFYMEKGTHVGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVLVVGVQVS 85
Query: 399 SRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLF 578
SR+F++W VTHS+K +Q+E+SV+LF+VAWT+TEI RYSFYTFSLL+HLPY IKWARY F
Sbjct: 86 SRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFF 145
Query: 579 IVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTFLILMMISYIPIFPQL 758
I+LYP+GV+GELLT+YAALP+V++ G++SI LPNKYN SFDYY FL++ M+SYIP+FPQL
Sbjct: 146 IILYPVGVAGELLTIYAALPYVKKTGMFSIRLPNKYNVSFDYYYFLLITMVSYIPLFPQL 205
Query: 759 YFHMIHQRRKVL 794
YFHM+ QRRKVL
Sbjct: 206 YFHMLRQRRKVL 217
>ref|XP_003121777.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 3 isoform 2 [Sus scrofa].
Length = 362
Score = 104 bits (260), Expect = 7e-23
Identities = 59/212 (27%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Frame = +3
Query: 171 LATAYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 344
L YL +YN+V G W+ + + + L K S++ ++++ + F Q +++E ++
Sbjct: 145 LKKGYLFMYNLVQFLGFSWIFVNMTVRLFILGKESFYDTFHTVADMMYFCQMLSVVETIN 204
Query: 345 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTF 524
IG+ S V+ + Q++ R F+++ + +++E+Q++ V W+ EI RY FY
Sbjct: 205 ATIGVTKSPVIPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYIWSTIEIFRYPFYML 264
Query: 525 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPN----KYNF 692
+ ++ ++ W RYT++I LYP+G E + V ++P + G +S +LP K F
Sbjct: 265 TCIDMDWKVLTWLRYTVWIPLYPLGCLTEAVAVIQSIPIFNETGRFSFTLPYPVKIKVRF 324
Query: 693 SFDYYTFLILMMISYIPIFPQLYFHMIHQRRK 788
SF +LI++ + F LY QRR+
Sbjct: 325 SFFLQIYLIILFLGLYVNFRHLY----KQRRR 352
>ref|XP_001929169.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 3 isoform 1 [Sus scrofa].
Length = 362
Score = 104 bits (260), Expect = 7e-23
Identities = 59/212 (27%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Frame = +3
Query: 171 LATAYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 344
L YL +YN+V G W+ + + + L K S++ ++++ + F Q +++E ++
Sbjct: 145 LKKGYLFMYNLVQFLGFSWIFVNMTVRLFILGKESFYDTFHTVADMMYFCQMLSVVETIN 204
Query: 345 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTF 524
IG+ S V+ + Q++ R F+++ + +++E+Q++ V W+ EI RY FY
Sbjct: 205 ATIGVTKSPVIPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYIWSTIEIFRYPFYML 264
Query: 525 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPN----KYNF 692
+ ++ ++ W RYT++I LYP+G E + V ++P + G +S +LP K F
Sbjct: 265 TCIDMDWKVLTWLRYTVWIPLYPLGCLTEAVAVIQSIPIFNETGRFSFTLPYPVKIKVRF 324
Query: 693 SFDYYTFLILMMISYIPIFPQLYFHMIHQRRK 788
SF +LI++ + F LY QRR+
Sbjct: 325 SFFLQIYLIILFLGLYVNFRHLY----KQRRR 352
>ref|XP_003121932.1| PREDICTED: LOW QUALITY PROTEIN: 3-hydroxyacyl-CoA dehydratase
4-like [Sus scrofa].
Length = 232
Score = 95.9 bits (237), Expect = 3e-20
Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Frame = +3
Query: 180 AYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAI 353
AYL +Y ++ G W+ + + K S +Y+I ++ Q +LLE+LH +
Sbjct: 18 AYLFVYYLLQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLCQLISLLELLHIYV 77
Query: 354 GIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLL 533
GI + ++ Q+ R+ +++ V S +EVQ + V + + W + +++RY++ S++
Sbjct: 78 GIESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFIFWNLLDMVRYTYSMLSVI 137
Query: 534 NHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTF 713
++ W TL++ +YP+ V E VY +LP+ G YS LP + F Y
Sbjct: 138 GISYVVLTWFSQTLWMPIYPLCVLAEAFAVYQSLPYFESFGTYSTKLPFDLSIYFPY--- 194
Query: 714 LILMMISYIPIFPQLYF---HMIHQRRKVLSHTEEHKK 818
++ I I +F +YF H+ +RR +L KK
Sbjct: 195 --VLKIYVIMLFIGMYFTYSHLYSERRDILKVFPVKKK 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,479,414
Number of extensions: 662836
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1726
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008316
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076076.2| 3-hydroxyacyl-CoA dehydratase 2 [Mus musculus]. 450 e-127
Alignment gi|NP_038963.3| 3-hydroxyacyl-CoA dehydratase 1 isoform 1 [Mus ... 318 5e-87
Alignment gi|NP_001012396.2| 3-hydroxyacyl-CoA dehydratase 1 isoform 2 [M... 131 7e-31
Alignment gi|NP_067320.2| 3-hydroxyacyl-CoA dehydratase 3 [Mus musculus]. 109 3e-24
Alignment gi|NP_080036.1| 3-hydroxyacyl-CoA dehydratase 4 [Mus musculus]. 94 2e-19
>ref|NP_076076.2| 3-hydroxyacyl-CoA dehydratase 2 [Mus musculus].
Length = 254
Score = 450 bits (1157), Expect = e-127
Identities = 221/244 (90%), Positives = 232/244 (95%)
Frame = +3
Query: 93 KGNXXXXXXXXXXXASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY 272
KGN +SG+RKKKGPGP+ATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY
Sbjct: 11 KGNGGGSGRVGAGDSSGARKKKGPGPVATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY 70
Query: 273 HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS 452
HSLYYSIE+PLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS
Sbjct: 71 HSLYYSIERPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS 130
Query: 453 EDSVLLFVVAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAA 632
EDSVLLFV+AWTITEIIRYSFYTFSLLNHLPY+IKWARYTLFIVLYPMGV+GELLT+YAA
Sbjct: 131 EDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYIIKWARYTLFIVLYPMGVTGELLTIYAA 190
Query: 633 LPFVRQAGLYSISLPNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVLSHTEEH 812
LPFVRQAGLYSISLPNKYNFSFDY+ FLIL+MISYIP+FPQLYFHMIHQRRKVLSHTEEH
Sbjct: 191 LPFVRQAGLYSISLPNKYNFSFDYHAFLILIMISYIPLFPQLYFHMIHQRRKVLSHTEEH 250
Query: 813 KKFE 824
KKFE
Sbjct: 251 KKFE 254
>ref|NP_038963.3| 3-hydroxyacyl-CoA dehydratase 1 isoform 1 [Mus musculus].
Length = 248
Score = 318 bits (814), Expect = 5e-87
Identities = 143/220 (65%), Positives = 189/220 (85%)
Frame = +3
Query: 135 ASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFF 314
A+G R++ G LATA+L YN+ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFF
Sbjct: 21 AAGKRRRLGL--LATAWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFF 78
Query: 315 QTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTIT 494
QT ALLE++HC IGIVP+SV++T QV SR+F++W +THS+K +Q+E+SV+LF+V+WT+T
Sbjct: 79 QTFALLEVVHCLIGIVPTSVLVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVT 138
Query: 495 EIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISL 674
EI RYSFYTFSLL+HLP+ IKWARY LFI+LYP+GV+GELLT+YAALP+V+++G++S+ L
Sbjct: 139 EITRYSFYTFSLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRL 198
Query: 675 PNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVL 794
PNKYN SFDYY FL++ M SYIP+FPQLYFHM+ QRRKVL
Sbjct: 199 PNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 238
>ref|NP_001012396.2| 3-hydroxyacyl-CoA dehydratase 1 isoform 2 [Mus musculus].
Length = 165
Score = 131 bits (330), Expect = 7e-31
Identities = 60/105 (57%), Positives = 83/105 (79%)
Frame = +3
Query: 135 ASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFF 314
A+G R++ G LATA+L YN+ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFF
Sbjct: 21 AAGKRRRLGL--LATAWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFF 78
Query: 315 QTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQ 449
QT ALLE++HC IGIVP+SV++T QV SR+F++W +THS+K +Q
Sbjct: 79 QTFALLEVVHCLIGIVPTSVLVTGVQVSSRIFMVWLITHSIKPIQ 123
>ref|NP_067320.2| 3-hydroxyacyl-CoA dehydratase 3 [Mus musculus].
Length = 362
Score = 109 bits (273), Expect = 3e-24
Identities = 65/212 (30%), Positives = 113/212 (53%), Gaps = 6/212 (2%)
Frame = +3
Query: 171 LATAYLVIYNVVMTAGWLVIAVGLVRAY--LAKGSYHSLYYSIEKPLKFFQTGALLEILH 344
L YL +YN+V G+ I V L + L K S++ ++++ + F Q AL+E L+
Sbjct: 145 LKKGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLN 204
Query: 345 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTF 524
AIG+ + V+ Q + R F+++ V +++E+Q++ V +W+ EI RY FY
Sbjct: 205 AAIGVTSTPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEIFRYPFYML 264
Query: 525 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLP----NKYNF 692
S ++ ++ W RYT++I LYP+G E + V ++P ++G +S +LP K F
Sbjct: 265 SCIDMDWKVLTWLRYTMWIPLYPLGCLSEAVAVIQSIPVFNESGRFSFTLPYPVKMKVRF 324
Query: 693 SFDYYTFLILMMISYIPIFPQLYFHMIHQRRK 788
SF +L+++ + F LY QRR+
Sbjct: 325 SFFLQVYLVMLFLGLYINFRHLY----KQRRR 352
>ref|NP_080036.1| 3-hydroxyacyl-CoA dehydratase 4 [Mus musculus].
Length = 232
Score = 94.0 bits (232), Expect = 2e-19
Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 2/206 (0%)
Frame = +3
Query: 183 YLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIG 356
YL IY ++ G W++ + + K S +Y+I ++ Q+ +LLE+LH IG
Sbjct: 19 YLFIYYLIQFCGHSWILANMTVRFFSFGKDSMADTFYAIGLVMRVCQSISLLELLHIYIG 78
Query: 357 IVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLLN 536
I + + Q+ RV +++ V S +EVQ + V + + W + +++RY++ S++
Sbjct: 79 IESNQLFPRFLQLTERVIILFGVITSQEEVQEKCVVCVLFILWNLLDMVRYTYSMLSVIG 138
Query: 537 HLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTFL 716
+ W TL++ +YP+ V E T+Y +LP+ G S LP + F Y L
Sbjct: 139 TSYAALTWLSQTLWMPIYPLCVLAEAFTIYQSLPYFESFGTNSTVLPFDLSTCFPYVLKL 198
Query: 717 ILMMISYIPIFPQLYFHMIHQRRKVL 794
LMM+ F Y H+ +R+ L
Sbjct: 199 YLMMLFIGMYF--TYSHLYTERKDFL 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,503,825
Number of extensions: 717741
Number of successful extensions: 2801
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2715
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008316
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_940684.1| 3-hydroxyacyl-CoA dehydratase 2 [Homo sapiens]. 457 e-129
Alignment gi|NP_055056.3| 3-hydroxyacyl-CoA dehydratase 1 [Homo sapiens]. 317 1e-86
Alignment gi|NP_057479.2| 3-hydroxyacyl-CoA dehydratase 3 [Homo sapiens]. 110 2e-24
Alignment gi|NP_001010915.2| 3-hydroxyacyl-CoA dehydratase 4 [Homo sapien... 100 3e-21
>ref|NP_940684.1| 3-hydroxyacyl-CoA dehydratase 2 [Homo sapiens].
Length = 254
Score = 457 bits (1177), Expect = e-129
Identities = 227/244 (93%), Positives = 232/244 (95%)
Frame = +3
Query: 93 KGNXXXXXXXXXXXASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY 272
KGN ASG+RKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY
Sbjct: 11 KGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY 70
Query: 273 HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS 452
HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS
Sbjct: 71 HSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQS 130
Query: 453 EDSVLLFVVAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAA 632
EDSVLLFV+AWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLT+YAA
Sbjct: 131 EDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAA 190
Query: 633 LPFVRQAGLYSISLPNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVLSHTEEH 812
LPFVRQAGLYSISLPNKYNFSFDYY FLIL+MISYIPIFPQLYFHMIHQRRK+LSHTEEH
Sbjct: 191 LPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQRRKILSHTEEH 250
Query: 813 KKFE 824
KKFE
Sbjct: 251 KKFE 254
>ref|NP_055056.3| 3-hydroxyacyl-CoA dehydratase 1 [Homo sapiens].
Length = 288
Score = 317 bits (811), Expect = 1e-86
Identities = 145/220 (65%), Positives = 185/220 (84%)
Frame = +3
Query: 135 ASGSRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFF 314
A G R++ G LATA+L Y++ MTAGWLV+A+ +VR Y+ KG++ LY SI+K LKFF
Sbjct: 61 APGERRRLGV--LATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFF 118
Query: 315 QTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTIT 494
QT ALLEI+HC IGIVP+SV++T QV SR+F++W +THS+K +Q+E+SV+LF+VAWT+T
Sbjct: 119 QTFALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVT 178
Query: 495 EIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISL 674
EI RYSFYTFSLL+HLPY IKWARY FI+LYP+GV+GELLT+YAALP V++ G++SI L
Sbjct: 179 EITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRL 238
Query: 675 PNKYNFSFDYYTFLILMMISYIPIFPQLYFHMIHQRRKVL 794
PNKYN SFDYY FL++ M SYIP+FPQLYFHM+ QRRKVL
Sbjct: 239 PNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 278
>ref|NP_057479.2| 3-hydroxyacyl-CoA dehydratase 3 [Homo sapiens].
Length = 362
Score = 110 bits (275), Expect = 2e-24
Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 6/212 (2%)
Frame = +3
Query: 171 LATAYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 344
L YL +YN+V G W+ + + + L K S++ ++++ + F Q A++E ++
Sbjct: 145 LRKGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETIN 204
Query: 345 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTF 524
AIG+ S V+ + Q++ R F+++ + +++E+Q++ V W+ EI RYSFY
Sbjct: 205 AAIGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSFYML 264
Query: 525 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPN----KYNF 692
+ ++ ++ W RYTL+I LYP+G E ++V ++P + G +S +LP K F
Sbjct: 265 TCIDMDWKVLTWLRYTLWIPLYPLGCLAEAVSVIQSIPIFNETGRFSFTLPYPVKIKVRF 324
Query: 693 SFDYYTFLILMMISYIPIFPQLYFHMIHQRRK 788
SF +LI++ + F LY QRR+
Sbjct: 325 SFFLQIYLIMIFLGLYINFRHLY----KQRRR 352
>ref|NP_001010915.2| 3-hydroxyacyl-CoA dehydratase 4 [Homo sapiens].
Length = 232
Score = 100 bits (248), Expect = 3e-21
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%)
Frame = +3
Query: 180 AYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAI 353
AYL IY ++ G W+ + + K S +Y+I ++ Q+ +LLE+LH +
Sbjct: 18 AYLFIYYLIQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLCQSVSLLELLHIYV 77
Query: 354 GIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFSLL 533
GI + ++ Q+ R+ +++ V S +EVQ + V + V W + +++RY++ S++
Sbjct: 78 GIESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFVFWNLLDMVRYTYSMLSVI 137
Query: 534 NHLPYLIKWARYTLFIVLYPMGVSGELLTVYAALPFVRQAGLYSISLPNKYNFSFDYYTF 713
++ W TL++ +YP+ V E +Y +LP+ G YS LP + F Y
Sbjct: 138 GISYAVLTWLSQTLWMPIYPLCVLAEAFAIYQSLPYFESFGTYSTKLPFDLSIYFPYVLK 197
Query: 714 LILMMISYIPIFPQLYFHMIHQRRKVL 794
+ LMM+ F Y H+ +RR +L
Sbjct: 198 IYLMMLFIGMYF--TYSHLYSERRDIL 222
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,509,425
Number of extensions: 827216
Number of successful extensions: 2799
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2751
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008316
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 361 5e-97
>Sscrofa_Chr13
|| Length = 218635234
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 563 caggtacacacttttcattgtgctgtacccaatgggagtgtcgggagagttgctcacagt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146485197 caggtacacacttttcattgtgctgtacccaatgggagtgtcgggagagttgctcacagt 146485256
Query: 623 atatgctgctctgccctttgtcagacaggctggcctgtactccatcagtttgccaaacaa 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146485257 atatgctgctctgccctttgtcagacaggctggcctgtactccatcagtttgccaaacaa 146485316
Query: 683 atacaatttctcctttgactattacacattcctgattctgatgatgatctcctacattcc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146485317 atacaatttctcctttgactattacacattcctgattctgatgatgatctcctacattcc 146485376
Query: 743 aa 744
||
Sbjct: 146485377 aa 146485378
Score = 278 bits (140), Expect = 6e-72
Identities = 184/203 (90%), Gaps = 1/203 (0%)
Strand = Plus / Plus
Query: 739 ttccaattttcccccagttatacttccacatgatacaccagagaagaaaggtcctttctc 798
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146491122 ttccagttttcccccagttatacttccacatgatacaccagagaagaaaggtcctttctc 146491181
Query: 799 ataccgaagaacacaagaaatttgagtagctcttgcttcctgcaccaccacccccagcaa 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146491182 ataccgaagaacacaagaaatttgagtagctcttgcttcctgcaccaccacccccagcaa 146491241
Query: 859 caaactttccaatgat-nnnnnnnnnnnnnnnnntgcagactttttcagttcccaatacg 917
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 146491242 caaactttccaatgataaaaaaaaaaaaaaatgctgcagactttttcagttcccaatacg 146491301
Query: 918 tttcataaaatatgagtaagaac 940
|||||||||||||||||||||||
Sbjct: 146491302 tttcataaaatatgagtaagaac 146491324
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 442 aggtacagagtgaagacagtgtcctcctgtttgttgttgcctggacaatcacagaaatta 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146534697 aggtacagagtgaagacagtgtcctcctgtttgttgttgcctggacaatcacagaaatta 146534638
Query: 502 tccgttactccttttatacattcagtcttttaaaccatctgccttacctcatcaaatggg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146534637 tccgttactccttttatacattcagtcttttaaaccatctgccttacctcatcaaatggg 146534578
Query: 562 ccaggta 568
|||||||
Sbjct: 146534577 ccaggta 146534571
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 217 ggtggctcgttatagcagttggcctggtcagagcatacctggctaagggtagctatcata 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146256079 ggtggctcgttatagcagttggcctggtcagagcatacctggctaagggtagctatcata 146256020
Query: 277 gcctttattattccattgaaaagcctttgaaattcttccaaactggagccttgttggag 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146256019 gcctttattattccattgaaaagcctttgaaattcttccaaactggagccttgttggag 146255961
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 ctcgcagtgcccactcctggaggtggtgctcgcgcgaggagagtcggctctcggcacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146258847 ctcgcagtgcccactcctggaggtggtgctcgcgcgaggagagtcggctctcggcacttg 146258788
Query: 61 acatggcggcagcggcggtgactgcagcgacgaaagggaat 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 146258787 acatggcggcagcggcggtgactgcagcgacgaaagggaat 146258747
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 353 aggaattgttccatcttctgttgtcctgacttctttccaggtgatgtcaagagtttttct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146394235 aggaattgttccatcttctgttgtcctgacttctttccaggtgatgtcaagagtttttct 146394294
Query: 413 aatctgggcagtaacacatagcgtcaaagaggta 446
||||||||||||||||||||||||||||||||||
Sbjct: 146394295 aatctgggcagtaacacatagcgtcaaagaggta 146394328
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 133 aagccagcggctcacggaagaagaagggcccggggcctctggccacggcgtatctggtca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146258715 aagccagcggctcacggaagaagaagggcccggggcctctggccacggcgtatctggtca 146258656
Query: 193 tctacaatgtggtgatgaccgcggggtg 220
||||||||||||||||||||||||||||
Sbjct: 146258655 tctacaatgtggtgatgaccgcggggtg 146258628
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,566,523
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 8
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)