Animal-Genome cDNA 20110601C-008317

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008317
         (1792 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039857.1| rho GTPase-activating protein 25 [Bos taurus].    964   0.0  
Alignment   gi|XP_002699031.1| PREDICTED: Rho GTPase activating protein 25-...   399   e-111
Alignment   gi|XP_585898.4| PREDICTED: Rho GTPase activating protein 25-lik...   399   e-111
Alignment   gi|NP_001095704.1| rho GTPase-activating protein 24 [Bos taurus].    288   1e-77
Alignment   gi|XP_001251291.1| PREDICTED: family with sequence similarity 1...   104   3e-22
Alignment   gi|NP_001179991.1| rho GTPase-activating protein 1 [Bos taurus].      95   2e-19
Alignment   gi|XP_002693580.1| PREDICTED: Rho GTPase activating protein 1 [...    95   2e-19
Alignment   gi|XP_002698074.1| PREDICTED: Rho GTPase activating protein 17 ...    92   1e-18
Alignment   gi|XP_002687966.1| PREDICTED: SH3-domain binding protein 1-like...    92   1e-18
Alignment   gi|XP_002704524.1| PREDICTED: SH3-domain binding protein 1-like...    92   1e-18

>ref|NP_001039857.1| rho GTPase-activating protein 25 [Bos taurus].
          Length = 640

 Score =  964 bits (2492), Expect = 0.0
 Identities = 484/538 (89%), Positives = 500/538 (92%)
 Frame = +1

Query: 130  ARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 309
            ARSRSVMTGEQMAAFHPAS+PNPLERPIKMGWLKKQRSIV+NWQQRYFVLRAQQLYYYKD
Sbjct: 21   ARSRSVMTGEQMAAFHPASTPNPLERPIKMGWLKKQRSIVRNWQQRYFVLRAQQLYYYKD 80

Query: 310  EEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEME 489
            EEDVKPQG MYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEME
Sbjct: 81   EEDVKPQGCMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEME 140

Query: 490  EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFR 669
            EWVKFLRRV+GTP GAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFR
Sbjct: 141  EWVKFLRRVSGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFR 200

Query: 670  LPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 849
            LPGQDNLVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPWSQY+GFLLCG
Sbjct: 201  LPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYDGFLLCG 260

Query: 850  QLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 1029
            QLMN+DEAKAQQEL+KQLSILPR+NYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN
Sbjct: 261  QLMNSDEAKAQQELIKQLSILPRENYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 320

Query: 1030 LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSS 1209
            LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLS            VARSS
Sbjct: 321  LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSPPAPQNDPKKPPVARSS 380

Query: 1210 VGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKR 1389
            VGWDA+EDPPISRTDS    ASDSDATSPTGQ+PNDGCLED  KAS++KPGDWK QSRKR
Sbjct: 381  VGWDATEDPPISRTDS----ASDSDATSPTGQQPNDGCLED--KASRDKPGDWKPQSRKR 434

Query: 1390 TQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRT 1569
            TQTLPNRKCFLTSALQGANSCKTE+ KNEF S SSEAKAG+GHRRTMSQGVPQ FD+QRT
Sbjct: 435  TQTLPNRKCFLTSALQGANSCKTEIFKNEFWSSSSEAKAGDGHRRTMSQGVPQLFDSQRT 494

Query: 1570 STYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQRML 1743
            STYDNVP QP SPGDKA  LSPQA DSKRDA  S NSE   GKK SGEEELES QRM+
Sbjct: 495  STYDNVPTQPGSPGDKASTLSPQACDSKRDALASLNSETGPGKKISGEEELESLQRMV 552


>ref|XP_002699031.1| PREDICTED: Rho GTPase activating protein 25-like [Bos taurus].
          Length = 720

 Score =  399 bits (1024), Expect = e-111
 Identities = 238/550 (43%), Positives = 321/550 (58%), Gaps = 31/550 (5%)
 Frame = +1

Query: 124  STARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYY 303
            S  RS+S++ GEQ  +      P  L   +K GWLKKQRSI+K WQQR+FVLR  QL+YY
Sbjct: 24   SATRSKSLVMGEQSRSPGRPPCPRRLGPVLKAGWLKKQRSIMKGWQQRWFVLRGDQLFYY 83

Query: 304  KDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSR---TGQDSYVLMASS 474
            KD+++ KPQG++ L G+ + E+   PE+ GK +FE+ P    +        ++ +LMASS
Sbjct: 84   KDKDETKPQGFISLQGTQVTELLPGPEDPGKHLFEISPGGAGEREKVPANPEALLLMASS 143

Query: 475  QAEMEEWVKFLRRVAGTPCG-AVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLN 651
            Q +ME+WV+ +RRV   P G  +FGQRL++TV +E+K+GP L P+LVE+C +FI E GL+
Sbjct: 144  QRDMEDWVQAIRRVIWAPFGRGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLS 203

Query: 652  EEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYE 831
            EEG+FR+PGQ NLV+ L+D+FD GE+P FD  TDVHTVASLLKLYLR+LPEPVVP+++YE
Sbjct: 204  EEGLFRMPGQANLVRDLQDSFDCGEKPRFDSTTDVHTVASLLKLYLRELPEPVVPFARYE 263

Query: 832  GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLA 1011
             FL C QL+  DE +   EL KQ+S LP  NY+LL YIC+FL E+Q +  VNKMSV NLA
Sbjct: 264  DFLNCAQLLTKDEGEGTLELAKQVSSLPLVNYNLLRYICKFLDEVQSHSDVNKMSVQNLA 323

Query: 1012 TVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF-PKSKDAPLSXXXXXXXXXX 1188
            TV G N++R + EDP  IM GT  +Q +MT++IR H  LF  ++ + P S          
Sbjct: 324  TVFGPNILRPQREDPVTIMEGTSLVQHLMTILIRKHSQLFTSRTTEGPASPRGGPP---- 379

Query: 1189 XXVARSSVGWDASE-------DP--------PISRTDSINNMA-SDSDATSPTGQRPNDG 1320
                  +VGW + E       +P        P  RT S++  A +    TSPTG      
Sbjct: 380  -----CTVGWGSEEVTRDDQAEPGSPSAPCLPSHRTSSLDGAAVAALSRTSPTG------ 428

Query: 1321 CLEDSIKASKEKPGDWKMQSRKRTQTLPN-RKCFLTSALQ------GANSCKTEVIKNEF 1479
             L      +   PG       K+ QTLPN R  F  S  +      G +S +  +I +  
Sbjct: 429  -LGSRCSPAATSPG-------KKVQTLPNWRSSFRQSGSRSGSPKVGTSSLEVPIISSGG 480

Query: 1480 CSPSSEAKAGEGHRRTMS-QGVPQFFDTQRTSTYDNVPVQPXSPGDKADALSP--QAYDS 1650
                +   +  GHRR  S   +      QR STYDNVP Q   P   + A  P   A   
Sbjct: 481  NWLMNGLSSLRGHRRASSGDRLKDSGSEQRLSTYDNVPPQSCFPSTPSVASLPWSGASSC 540

Query: 1651 KRDAPGSPNS 1680
            +  A GS +S
Sbjct: 541  EASAQGSVSS 550


>ref|XP_585898.4| PREDICTED: Rho GTPase activating protein 25-like [Bos taurus].
          Length = 720

 Score =  399 bits (1024), Expect = e-111
 Identities = 238/550 (43%), Positives = 321/550 (58%), Gaps = 31/550 (5%)
 Frame = +1

Query: 124  STARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYY 303
            S  RS+S++ GEQ  +      P  L   +K GWLKKQRSI+K WQQR+FVLR  QL+YY
Sbjct: 24   SATRSKSLVMGEQSRSPGRPPCPRRLGPVLKAGWLKKQRSIMKGWQQRWFVLRGDQLFYY 83

Query: 304  KDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSR---TGQDSYVLMASS 474
            KD+++ KPQG++ L G+ + E+   PE+ GK +FE+ P    +        ++ +LMASS
Sbjct: 84   KDKDETKPQGFISLQGTQVTELLPGPEDPGKHLFEISPGGAGEREKVPANPEALLLMASS 143

Query: 475  QAEMEEWVKFLRRVAGTPCG-AVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLN 651
            Q +ME+WV+ +RRV   P G  +FGQRL++TV +E+K+GP L P+LVE+C +FI E GL+
Sbjct: 144  QRDMEDWVQAIRRVIWAPFGRGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLS 203

Query: 652  EEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYE 831
            EEG+FR+PGQ NLV+ L+D+FD GE+P FD  TDVHTVASLLKLYLR+LPEPVVP+++YE
Sbjct: 204  EEGLFRMPGQANLVRDLQDSFDCGEKPRFDSTTDVHTVASLLKLYLRELPEPVVPFARYE 263

Query: 832  GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLA 1011
             FL C QL+  DE +   EL KQ+S LP  NY+LL YIC+FL E+Q +  VNKMSV NLA
Sbjct: 264  DFLNCAQLLTKDEGEGTLELAKQVSSLPLVNYNLLRYICKFLDEVQSHSDVNKMSVQNLA 323

Query: 1012 TVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF-PKSKDAPLSXXXXXXXXXX 1188
            TV G N++R + EDP  IM GT  +Q +MT++IR H  LF  ++ + P S          
Sbjct: 324  TVFGPNILRPQREDPVTIMEGTSLVQHLMTILIRKHSQLFTSRTTEGPASPRGGPP---- 379

Query: 1189 XXVARSSVGWDASE-------DP--------PISRTDSINNMA-SDSDATSPTGQRPNDG 1320
                  +VGW + E       +P        P  RT S++  A +    TSPTG      
Sbjct: 380  -----CTVGWGSEEVTRDDQAEPGSPSAPCLPSHRTSSLDGAAVAALSRTSPTG------ 428

Query: 1321 CLEDSIKASKEKPGDWKMQSRKRTQTLPN-RKCFLTSALQ------GANSCKTEVIKNEF 1479
             L      +   PG       K+ QTLPN R  F  S  +      G +S +  +I +  
Sbjct: 429  -LGSRCSPAATSPG-------KKVQTLPNWRSSFRQSGSRSGSPKVGTSSLEVPIISSGG 480

Query: 1480 CSPSSEAKAGEGHRRTMS-QGVPQFFDTQRTSTYDNVPVQPXSPGDKADALSP--QAYDS 1650
                +   +  GHRR  S   +      QR STYDNVP Q   P   + A  P   A   
Sbjct: 481  NWLMNGLSSLRGHRRASSGDRLKDSGSEQRLSTYDNVPPQSCFPSTPSVASLPWSGASSC 540

Query: 1651 KRDAPGSPNS 1680
            +  A GS +S
Sbjct: 541  EASAQGSVSS 550


>ref|NP_001095704.1| rho GTPase-activating protein 24 [Bos taurus].
          Length = 654

 Score =  288 bits (736), Expect = 1e-77
 Identities = 137/234 (58%), Positives = 183/234 (78%), Gaps = 1/234 (0%)
 Frame = +1

Query: 448  DSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVPILVEKCA 624
            +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV YE+++G  L P+LVE+C 
Sbjct: 6    ESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCV 65

Query: 625  EFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPE 804
            +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +TDVHTVASLLKLYLR+LPE
Sbjct: 66   DFIRQRGLKEEGLFRLPGQTNLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPE 125

Query: 805  PVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGV 984
            PV+P+++YE FL C +L++ +E    +EL KQ+  LP  NY+LL YICRFL E+Q   G+
Sbjct: 126  PVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGI 185

Query: 985  NKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD 1146
            NKMSV NLATV G N++R KVEDP  IM GT  +Q++M++MI  H+ LFPK  +
Sbjct: 186  NKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMIGKHDRLFPKDAE 239


>ref|XP_001251291.1| PREDICTED: family with sequence similarity 13, member A1-like [Bos
            taurus].
          Length = 447

 Score =  104 bits (259), Expect = 3e-22
 Identities = 65/165 (39%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
 Frame = +1

Query: 538  VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFD 717
            +FG  L +   ++Q    + VP +V    E++  HGL +EG+FR+ G   +V+QLR  F+
Sbjct: 168  LFGVSLQDL--HQQGLTENGVPAIVGSIVEYLTMHGLTQEGLFRVNGNVKVVEQLRWKFE 225

Query: 718  AGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVK 897
            +G      RD DV   ASLLKL+LR+LPE V+  +    FL   QL   D   AQ+  ++
Sbjct: 226  SGVPVELGRDGDVCAAASLLKLFLRELPESVITSTLQPRFL---QLFQDDRNDAQESNLR 282

Query: 898  QL-SILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 1029
             L   LP  +Y LL Y+C+FL ++  +   N+M+V NLATV G N
Sbjct: 283  ALIEELPDTHYCLLKYLCQFLTKVAKHHVQNRMNVHNLATVFGPN 327


>ref|NP_001179991.1| rho GTPase-activating protein 1 [Bos taurus].
          Length = 439

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 4/188 (2%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +P+++ +   ++  H L  EGIFR      +V++++  ++ G   +F++  ++H  A +L
Sbjct: 259  IPLVLRETVAYLRAHALTTEGIFRRSANTQVVREVQHKYNMGLSVDFEQYNELHLPAVIL 318

Query: 778  KLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYIC 948
            K +LR+LPEP++ +  Y    GFL      N DE++  +  ++ L  LP +NY +L ++ 
Sbjct: 319  KTFLRELPEPLLTFDLYSHVVGFL------NIDESQRVKATLQALQTLPEENYLVLRFLT 372

Query: 949  RFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHE-V 1125
             FL +I      NKM+  NLA V G NL+ +K  D A+ ++    I    T  + DH+  
Sbjct: 373  AFLVQISALSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTKFLLDHQGE 429

Query: 1126 LFPKSKDA 1149
            LFP S DA
Sbjct: 430  LFP-SPDA 436


>ref|XP_002693580.1| PREDICTED: Rho GTPase activating protein 1 [Bos taurus].
          Length = 439

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 4/188 (2%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +P+++ +   ++  H L  EGIFR      +V++++  ++ G   +F++  ++H  A +L
Sbjct: 259  IPLVLRETVAYLRAHALTTEGIFRRSANTQVVREVQHKYNMGLSVDFEQYNELHLPAVIL 318

Query: 778  KLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYIC 948
            K +LR+LPEP++ +  Y    GFL      N DE++  +  ++ L  LP +NY +L ++ 
Sbjct: 319  KTFLRELPEPLLTFDLYSHVVGFL------NIDESQRVKATLQALQTLPEENYLVLRFLT 372

Query: 949  RFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHE-V 1125
             FL +I      NKM+  NLA V G NL+ +K  D A+ ++    I    T  + DH+  
Sbjct: 373  AFLVQISALSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTKFLLDHQGE 429

Query: 1126 LFPKSKDA 1149
            LFP S DA
Sbjct: 430  LFP-SPDA 436


>ref|XP_002698074.1| PREDICTED: Rho GTPase activating protein 17 [Bos taurus].
          Length = 889

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 61/208 (29%), Positives = 104/208 (50%), Gaps = 2/208 (0%)
 Frame = +1

Query: 541  FGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDA 720
            FG  L+E +    K     + + +E C   +LE G+ EEG+FR+    + +K+L+ A D 
Sbjct: 268  FGTPLEEHL----KRSGREIALPIEACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDC 323

Query: 721  GERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQ 900
                  +  +D H VA  LK YLR+LPEP++ ++ YE +     +   D+ K  Q+L + 
Sbjct: 324  STSHLDEFYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASVQ--DQDKKLQDLWRT 381

Query: 901  LSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTP 1080
               LP  N+    Y+ +FL ++     +NKM+  N+A V+G NL+ +K E     M    
Sbjct: 382  CQKLPPQNFVNFRYLIKFLAKLAQTSDINKMTPSNIAIVLGPNLLWAKNEGTLAEMAAAT 441

Query: 1081 QIQ--RVMTMMIRDHEVLFPKSKDAPLS 1158
             +    V+  +I+     FP+  +  +S
Sbjct: 442  SVHVVAVIEPIIQHANWFFPEEVEFNVS 469


>ref|XP_002687966.1| PREDICTED: SH3-domain binding protein 1-like [Bos taurus].
          Length = 693

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 12/267 (4%)
 Frame = +1

Query: 370  ATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGAVFGQ 549
            AT  +    +   ++    D  R    S     +   E          +  TP   V+G 
Sbjct: 215  ATKEDTYANYFIHLMEIQADYHRKSLSSLDTALAELRENHSQTDPSPSMTATPFSRVYGV 274

Query: 550  RLDETVAYEQKFGPHL------VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDA 711
             L          G HL      + + +E C   +L  G+ EEG+FRL    +++K+L+  
Sbjct: 275  PL----------GIHLRELGRDIALPIEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQT 324

Query: 712  FDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQEL 891
              +  R   +  +D H VA  LK YLR+LPEP++ +  Y+ ++    L    E  A+ E 
Sbjct: 325  MASDPRSLQEFCSDPHAVAGALKSYLRELPEPLMTFDLYDDWMRAASL---KEPGARLEA 381

Query: 892  VKQL-SILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIM 1068
            ++++ S LP +N S L Y+ +FL ++     VNKM+  N+A V+G NL+    +D  +  
Sbjct: 382  LQEVCSRLPHENLSNLRYLMKFLAQLAEEQEVNKMTPSNIAIVLGPNLLWPPEKDGDLAQ 441

Query: 1069 R-----GTPQIQRVMTMMIRDHEVLFP 1134
                   + Q+  V+  +I++ + LFP
Sbjct: 442  LDAASVSSIQVVGVVEALIQNTDTLFP 468


>ref|XP_002704524.1| PREDICTED: SH3-domain binding protein 1-like [Bos taurus].
          Length = 693

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 12/267 (4%)
 Frame = +1

Query: 370  ATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGAVFGQ 549
            AT  +    +   ++    D  R    S     +   E          +  TP   V+G 
Sbjct: 215  ATKEDTYANYFIHLMEIQADYHRKSLSSLDTALAELRENHSQTDPSPSMTATPFSRVYGV 274

Query: 550  RLDETVAYEQKFGPHL------VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDA 711
             L          G HL      + + +E C   +L  G+ EEG+FRL    +++K+L+  
Sbjct: 275  PL----------GIHLRELGRDIALPIEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQT 324

Query: 712  FDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQEL 891
              +  R   +  +D H VA  LK YLR+LPEP++ +  Y+ ++    L    E  A+ E 
Sbjct: 325  MASDPRSLQEFCSDPHAVAGALKSYLRELPEPLMTFDLYDDWMRAASL---KEPGARLEA 381

Query: 892  VKQL-SILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIM 1068
            ++++ S LP +N S L Y+ +FL ++     VNKM+  N+A V+G NL+    +D  +  
Sbjct: 382  LQEVCSRLPHENLSNLRYLMKFLAQLAEEQEVNKMTPSNIAIVLGPNLLWPPEKDGDLAQ 441

Query: 1069 R-----GTPQIQRVMTMMIRDHEVLFP 1134
                   + Q+  V+  +I++ + LFP
Sbjct: 442  LDAASVSSIQVVGVVEALIQNTDTLFP 468


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,685,403
Number of extensions: 2117909
Number of successful extensions: 9091
Number of sequences better than 1.0e-05: 112
Number of HSP's gapped: 8898
Number of HSP's successfully gapped: 113
Length of query: 597
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 489
Effective length of database: 14,107,870
Effective search space: 6898748430
Effective search space used: 6898748430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008317
         (1792 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538527.2| PREDICTED: similar to Rho-GTPase-activating pro...   711   0.0  
Alignment   gi|XP_849790.1| PREDICTED: similar to Rho GTPase activating pro...   290   3e-78
Alignment   gi|XP_859794.1| PREDICTED: similar to Rho GTPase activating pro...   288   1e-77
Alignment   gi|XP_535640.2| PREDICTED: similar to Rho GTPase activating pro...   258   1e-68
Alignment   gi|XP_859727.1| PREDICTED: similar to Rho GTPase activating pro...   216   7e-56
Alignment   gi|XP_544976.2| PREDICTED: similar to family with sequence simi...   106   6e-23
Alignment   gi|NP_001076836.1| rho GTPase-activating protein 1 [Canis lupus...    99   2e-20
Alignment   gi|XP_547084.2| PREDICTED: similar to nadrin isoform 1 [Canis f...    97   4e-20
Alignment   gi|NP_001191334.1| rho GTPase-activating protein 8 [Canis lupus...    95   2e-19
Alignment   gi|XP_851463.1| PREDICTED: similar to Rho-GTPase-activating pro...    95   2e-19

>ref|XP_538527.2| PREDICTED: similar to Rho-GTPase-activating protein 25 [Canis
            familiaris].
          Length = 713

 Score =  711 bits (1834), Expect = 0.0
 Identities = 387/563 (68%), Positives = 423/563 (75%), Gaps = 23/563 (4%)
 Frame = +1

Query: 124  STARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYY 303
            + ARSRSVMTGEQMA  H   +P+PL+RP+KMGWLKKQRSIVKNWQQRYFVLRAQQL YY
Sbjct: 74   AVARSRSVMTGEQMATLH-LPAPSPLQRPVKMGWLKKQRSIVKNWQQRYFVLRAQQLCYY 132

Query: 304  KDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPAS-CDQSRTGQDSYVLMASSQA 480
            KDEED KPQG +YLPG TIKEIATNPEEAGKFVFEVIP S  D+  T  DSYVLMASSQA
Sbjct: 133  KDEEDGKPQGCLYLPGGTIKEIATNPEEAGKFVFEVIPGSENDKVLTNFDSYVLMASSQA 192

Query: 481  EMEEWVKFLRRVAGTPCGA-VFGQRLDET----VAYEQKFGPHL------VPILVEKCAE 627
            EMEEWVKFLRRVAGTP G   + QR        +A       HL        IL    A 
Sbjct: 193  EMEEWVKFLRRVAGTPSGGPAYLQRTPPASCGFLASRGSSHQHLPLLTSATSILCRCWAR 252

Query: 628  FILEHGLNEEGIFRLPGQDN-----------LVKQLRDAFDAGERPNFDRDTDVHTVASL 774
              L + +    +  L G              L++ +  A           DTDVHTVASL
Sbjct: 253  KQLHYLVPSSAVSDLTGGQAAEPGDGRVDAALLRMVASALG---------DTDVHTVASL 303

Query: 775  LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRF 954
            LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLS+LPRDNYSLLSY+CRF
Sbjct: 304  LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSLLPRDNYSLLSYLCRF 363

Query: 955  LHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFP 1134
            LHEIQLNC VNKMSVDNLATVIGVNLIRSKVEDPAVIMRG PQIQRVMTMMIRDHEVLFP
Sbjct: 364  LHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGAPQIQRVMTMMIRDHEVLFP 423

Query: 1135 KSKDAPLSXXXXXXXXXXXXVARSSVGWDASEDPPISRTDSINNMASDSDATSPTGQRPN 1314
            KSKD PLS            VARSSVGWDA+EDPPISR DS +N  S+SDATSPTGQ+P+
Sbjct: 424  KSKDVPLSPPAQKNDPKKPPVARSSVGWDATEDPPISRADSFSNTTSNSDATSPTGQQPS 483

Query: 1315 DGCLEDSIKASKEKPGDWKMQSRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSS 1494
            DGCLE+S KA +EK GDWK+QSRKRTQTLPNRKCFLTSA QGANS K E+ KNEF SP S
Sbjct: 484  DGCLEESSKAPREKLGDWKLQSRKRTQTLPNRKCFLTSAFQGANSGKVEIFKNEFWSP-S 542

Query: 1495 EAKAGEGHRRTMSQGVPQFFDTQRTSTYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSP 1674
            + KAGEGHRRT+SQGVP + D QRTSTYDNVP  P   G++A A S  A DSKR+   SP
Sbjct: 543  DVKAGEGHRRTLSQGVPHYPDAQRTSTYDNVPTLPGPTGEEAAAASSPACDSKRETLASP 602

Query: 1675 NSEARAGKKNSGEEELESFQRML 1743
            +SE    KKNSGEE+LES Q ++
Sbjct: 603  SSETGPEKKNSGEEKLESLQTVV 625


>ref|XP_849790.1| PREDICTED: similar to Rho GTPase activating protein 24 isoform 1
            isoform 2 [Canis familiaris].
          Length = 666

 Score =  290 bits (742), Expect = 3e-78
 Identities = 139/241 (57%), Positives = 185/241 (76%), Gaps = 1/241 (0%)
 Frame = +1

Query: 427  DQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVP 603
            D+     +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV YE+++G  L P
Sbjct: 11   DRMTANHESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAP 70

Query: 604  ILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKL 783
            +LVE+C +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +TDVHTVASLLKL
Sbjct: 71   MLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKL 130

Query: 784  YLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHE 963
            YLR+LPEPV+P+++YE FL C +L++ +E    +EL KQ+  LP  NY+LL YICRFL E
Sbjct: 131  YLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDE 190

Query: 964  IQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSK 1143
            +Q   GVNKMSV NLATV G N++R KVEDP  IM GT  +Q++M++MI  H+ LFPK  
Sbjct: 191  VQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDRLFPKDT 250

Query: 1144 D 1146
            +
Sbjct: 251  E 251


>ref|XP_859794.1| PREDICTED: similar to Rho GTPase activating protein 24 isoform 1
            isoform 4 [Canis familiaris].
          Length = 654

 Score =  288 bits (737), Expect = 1e-77
 Identities = 138/234 (58%), Positives = 183/234 (78%), Gaps = 1/234 (0%)
 Frame = +1

Query: 448  DSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVPILVEKCA 624
            +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV YE+++G  L P+LVE+C 
Sbjct: 6    ESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCV 65

Query: 625  EFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPE 804
            +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +TDVHTVASLLKLYLR+LPE
Sbjct: 66   DFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPE 125

Query: 805  PVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGV 984
            PV+P+++YE FL C +L++ +E    +EL KQ+  LP  NY+LL YICRFL E+Q   GV
Sbjct: 126  PVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGV 185

Query: 985  NKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD 1146
            NKMSV NLATV G N++R KVEDP  IM GT  +Q++M++MI  H+ LFPK  +
Sbjct: 186  NKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDRLFPKDTE 239


>ref|XP_535640.2| PREDICTED: similar to Rho GTPase activating protein 24 (predicted)
            isoform 1 [Canis familiaris].
          Length = 657

 Score =  258 bits (660), Expect = 1e-68
 Identities = 121/203 (59%), Positives = 160/203 (78%)
 Frame = +1

Query: 538  VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFD 717
            +FGQ+L++TV YE+++G  L P+LVE+C +FI + GL EEG+FRLPGQ NLVK+L+DAFD
Sbjct: 40   IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD 99

Query: 718  AGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVK 897
             GE+P+FD +TDVHTVASLLKLYLR+LPEPV+P+++YE FL C +L++ +E    +EL K
Sbjct: 100  CGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAK 159

Query: 898  QLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGT 1077
            Q+  LP  NY+LL YICRFL E+Q   GVNKMSV NLATV G N++R KVEDP  IM GT
Sbjct: 160  QVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGT 219

Query: 1078 PQIQRVMTMMIRDHEVLFPKSKD 1146
              +Q++M++MI  H+ LFPK  +
Sbjct: 220  VVVQQLMSVMISKHDRLFPKDTE 242


>ref|XP_859727.1| PREDICTED: similar to Rho GTPase activating protein 24 isoform 1
           isoform 3 [Canis familiaris].
          Length = 174

 Score =  216 bits (549), Expect = 7e-56
 Identities = 101/169 (59%), Positives = 136/169 (80%), Gaps = 1/169 (0%)
 Frame = +1

Query: 448 DSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVPILVEKCA 624
           +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV YE+++G  L P+LVE+C 
Sbjct: 6   ESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCV 65

Query: 625 EFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPE 804
           +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +TDVHTVASLLKLYLR+LPE
Sbjct: 66  DFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPE 125

Query: 805 PVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICR 951
           PV+P+++YE FL C +L++ +E    +EL KQ+  LP  NY+LL YICR
Sbjct: 126 PVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICR 174


>ref|XP_544976.2| PREDICTED: similar to family with sequence similarity 13, member A1
            isoform a [Canis familiaris].
          Length = 1033

 Score =  106 bits (265), Expect = 6e-23
 Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 1/179 (0%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +P +V    +++ +HGL +EG+FR+ G   +V+QLR  F++G      +D DV + ASLL
Sbjct: 68   IPAIVGTLVDYLTKHGLTQEGLFRVNGNVKVVEQLRWKFESGAPVELGKDGDVCSAASLL 127

Query: 778  KLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQL-SILPRDNYSLLSYICRF 954
            KL+LR+LPE V+  + Y  F+   QL   D   AQ+  ++ L   LP  +Y LL Y+C+F
Sbjct: 128  KLFLRELPESVITSTLYPRFI---QLFQDDRNDAQENSLRDLIKELPDTHYCLLKYLCQF 184

Query: 955  LHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
            L ++  +   N+M+V NLATV G N     V      M+      ++M  ++ ++  LF
Sbjct: 185  LTKVAKHHVENRMNVHNLATVFGPNCFH--VPPGLEGMKEQDICNKIMAKLLENYNTLF 241


>ref|NP_001076836.1| rho GTPase-activating protein 1 [Canis lupus familiaris].
          Length = 439

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 3/187 (1%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +P+++ +   ++  H L  EGIFR      +V++++  ++ G   +FD+  D+H  A +L
Sbjct: 259  IPLVLRETIAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNDLHLPAVIL 318

Query: 778  KLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYIC 948
            K +LR+LPEP++ +  Y    GFL      N DE++  +  ++ L  LP +NY +L ++ 
Sbjct: 319  KTFLRELPEPLLTFDLYPHVVGFL------NIDESQRVEATLQVLRTLPEENYQVLRFLT 372

Query: 949  RFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVL 1128
             FL +I     +NKM+  NLA V G NL+ +K  D A+ ++    I    T  + DH+  
Sbjct: 373  AFLVQISAQSELNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTKFLLDHQGE 429

Query: 1129 FPKSKDA 1149
              +S D+
Sbjct: 430  LFRSPDS 436


>ref|XP_547084.2| PREDICTED: similar to nadrin isoform 1 [Canis familiaris].
          Length = 898

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 115/470 (24%), Positives = 190/470 (40%), Gaps = 14/470 (2%)
 Frame = +1

Query: 385  EAGKFVFEVIPASCDQSRTGQDSYV-LMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDE 561
            E GKF   ++ A  D  R         +   +A  ++W +             FG  L+E
Sbjct: 212  EYGKFFVTLLEAQADYHRKALAVLEKALPEMRAHQDKWAE----------KPAFGTPLEE 261

Query: 562  TVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFD 741
             +    K     + + +E C   +LE G+ EEG+FR+    + +K+L+ A D       +
Sbjct: 262  HL----KRSGREIALPIEACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDCSTSHLDE 317

Query: 742  RDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRD 921
              +D H VA  LK YLR+LPEP++ ++ YE +     +   D+ K  Q+L +    LP  
Sbjct: 318  FYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASVQ--DQDKKLQDLWRTCQKLPPQ 375

Query: 922  NYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQ--RV 1095
            N+    Y+ +FL ++     VNKM+  N+A V+G NL+ +K E     M     +    V
Sbjct: 376  NFVNFRYLIKFLAKLAQTSDVNKMTPSNIAIVLGPNLLWAKTEGSLAEMAAATSVHVVAV 435

Query: 1096 MTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSSVGWDASEDPPISRTDSINNMAS 1275
            +  +I+  +  FP+  +  +S                    +A        ++  ++  +
Sbjct: 436  IEPIIQHADWFFPEEVEFNVS--------------------EAFVPLVTPNSNHSSHTGN 475

Query: 1276 DSDATSPTGQRPNDGCLEDSIKASKEKPGDWKM--QSRKRTQTLPNRKCF---LTSALQG 1440
            DSD+ +   +RP    + +     KE  G   M  Q+ +R  TL NRK         L  
Sbjct: 476  DSDSGTLERKRPASMAVMEGDLVKKESFGVKLMDFQAHRRGGTL-NRKHISPAFQPPLPP 534

Query: 1441 ANSCKTEVIKNEFCSPSSEAKAGEG------HRRTMSQGVPQFFDTQRTSTYDNVPVQPX 1602
             +         E    SS A++  G          + QG        +TS    +   P 
Sbjct: 535  TDGSTLAPAGPEPPPQSSRAESSTGGGTVPSSAGILEQGPSPGDRGCQTSNLTFLSGIPA 594

Query: 1603 SPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQRMLGQG 1752
             P D A A +P        APG  +S+  AG +N  +    S Q  +G G
Sbjct: 595  KPKDPAPAPAP--------APGRNSSQMAAG-QNQAQTAAGSHQLSVGPG 635


>ref|NP_001191334.1| rho GTPase-activating protein 8 [Canis lupus familiaris].
          Length = 474

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 49/147 (33%), Positives = 85/147 (57%)
 Frame = +1

Query: 595  LVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASL 774
            L+P ++     ++ E GL+ EG+FR     + +++++  ++ G+  NFD   D+H  A +
Sbjct: 251  LIPPVLRFTVTYLREKGLHAEGLFRRSASVHTIREIQRLYNQGKPVNFDDYGDIHLPAVI 310

Query: 775  LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRF 954
            LK +LR+LP+P++ +  YE  L   ++ + + +       + L  LP  NY++LSY+  F
Sbjct: 311  LKTFLRELPQPLLTFKAYEQIL---EITSVESSLRVTRCRQILQSLPEHNYAVLSYLMGF 367

Query: 955  LHEIQLNCGVNKMSVDNLATVIGVNLI 1035
            LHE+      NKM+  NLA V G+NLI
Sbjct: 368  LHEVSRESIFNKMNSSNLACVFGLNLI 394


>ref|XP_851463.1| PREDICTED: similar to Rho-GTPase-activating protein 8 [Canis
            familiaris].
          Length = 698

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 49/147 (33%), Positives = 85/147 (57%)
 Frame = +1

Query: 595  LVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASL 774
            L+P ++     ++ E GL+ EG+FR     + +++++  ++ G+  NFD   D+H  A +
Sbjct: 426  LIPPVLRFTVTYLREKGLHAEGLFRRSASVHTIREIQRLYNQGKPVNFDDYGDIHLPAVI 485

Query: 775  LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRF 954
            LK +LR+LP+P++ +  YE  L   ++ + + +       + L  LP  NY++LSY+  F
Sbjct: 486  LKTFLRELPQPLLTFKAYEQIL---EITSVESSLRVTRCRQILQSLPEHNYAVLSYLMGF 542

Query: 955  LHEIQLNCGVNKMSVDNLATVIGVNLI 1035
            LHE+      NKM+  NLA V G+NLI
Sbjct: 543  LHEVSRESIFNKMNSSNLACVFGLNLI 569


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,790,075
Number of extensions: 2184194
Number of successful extensions: 9213
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 9033
Number of HSP's successfully gapped: 119
Length of query: 597
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 488
Effective length of database: 15,240,880
Effective search space: 7437549440
Effective search space used: 7437549440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008317
         (1792 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003125117.2| PREDICTED: rho GTPase-activating protein 25 ...  1056   0.0  
Alignment   gi|XP_003129393.2| PREDICTED: rho GTPase-activating protein 24-...   262   5e-70
Alignment   gi|XP_003129392.2| PREDICTED: rho GTPase-activating protein 24-...   107   2e-23
Alignment   gi|XP_003357132.1| PREDICTED: protein FAM13A-like [Sus scrofa].      100   2e-21
Alignment   gi|XP_003122873.2| PREDICTED: rho GTPase-activating protein 1 [...    98   2e-20
Alignment   gi|NP_001191312.1| rho GTPase-activating protein 8 [Sus scrofa].      93   4e-19
Alignment   gi|XP_003361237.1| PREDICTED: n-chimaerin-like [Sus scrofa].          92   7e-19
Alignment   gi|XP_003130497.2| PREDICTED: SLIT-ROBO Rho GTPase-activating p...    90   4e-18
Alignment   gi|XP_003355553.1| PREDICTED: SLIT-ROBO Rho GTPase-activating p...    90   5e-18
Alignment   gi|XP_003135532.1| PREDICTED: rho GTPase-activating protein 4 [...    89   6e-18

>ref|XP_003125117.2| PREDICTED: rho GTPase-activating protein 25 [Sus scrofa].
          Length = 640

 Score = 1056 bits (2731), Expect = 0.0
 Identities = 526/547 (96%), Positives = 527/547 (96%)
 Frame = +1

Query: 121  LSTARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYY 300
            +S ARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYY
Sbjct: 11   VSLARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYY 70

Query: 301  YKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQA 480
            YKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQA
Sbjct: 71   YKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQA 130

Query: 481  EMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEG 660
            EMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEG
Sbjct: 131  EMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEG 190

Query: 661  IFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFL 840
            IFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFL
Sbjct: 191  IFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFL 250

Query: 841  LCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVI 1020
            LCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVI
Sbjct: 251  LCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVI 310

Query: 1021 GVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVA 1200
            GVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLS            VA
Sbjct: 311  GVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSPPAPKNDPKKPPVA 370

Query: 1201 RSSVGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQS 1380
            RSSVGWDASEDPPISRTDSINNM SDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQS
Sbjct: 371  RSSVGWDASEDPPISRTDSINNMTSDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQS 430

Query: 1381 RKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDT 1560
            RKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDT
Sbjct: 431  RKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDT 490

Query: 1561 QRTSTYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQRM 1740
            QRTSTYDNVPVQP SPGDKADALSPQAYDSKRDAPGSPNSEAR GKKNSGEEELESFQRM
Sbjct: 491  QRTSTYDNVPVQPGSPGDKADALSPQAYDSKRDAPGSPNSEARPGKKNSGEEELESFQRM 550

Query: 1741 LGQGAAK 1761
            L Q   K
Sbjct: 551  LVQELRK 557


>ref|XP_003129393.2| PREDICTED: rho GTPase-activating protein 24-like [Sus scrofa].
          Length = 656

 Score =  262 bits (669), Expect = 5e-70
 Identities = 132/278 (47%), Positives = 180/278 (64%), Gaps = 19/278 (6%)
 Frame = +1

Query: 538  VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFD 717
            +FGQ+L++TV YE+++G  L P+LVE+C +FI + GL EEG+FRLPGQ NLVK+L+DAFD
Sbjct: 39   IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD 98

Query: 718  AGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVK 897
             GE+P+FD +TDVHTVASLLKLYLR+LPEPV+P+++YE FL C +L++ +E    +EL K
Sbjct: 99   CGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAK 158

Query: 898  QLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGT 1077
            Q+  LP  NY+LL YICRFL E+Q   G+NKMSV NLATV G N++R KVEDP  IM GT
Sbjct: 159  QVKSLPAVNYNLLKYICRFLDEVQSYSGINKMSVQNLATVFGPNILRPKVEDPLTIMEGT 218

Query: 1078 PQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSSVG-------------- 1215
              +Q++M++MI  H+ LFPK  +                  ++++G              
Sbjct: 219  VVVQQLMSVMISKHDHLFPKDAELQSKPQDGVSSNNNDLQKKATMGQLQNKENTTTKDSP 278

Query: 1216 -----WDASEDPPISRTDSINNMASDSDATSPTGQRPN 1314
                 WD SE P  S  D       +   T+P+G + N
Sbjct: 279  GRRCSWDKSESPQRSSVD-------NGSPTAPSGSKTN 309


>ref|XP_003129392.2| PREDICTED: rho GTPase-activating protein 24-like, partial [Sus
            scrofa].
          Length = 505

 Score =  107 bits (268), Expect = 2e-23
 Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 19/163 (11%)
 Frame = +1

Query: 883  QELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAV 1062
            +EL KQ+  LP  NY+LL YICRFL E+Q   G+NKMSV NLATV G N++R KVEDP  
Sbjct: 3    KELAKQVKSLPAVNYNLLKYICRFLDEVQSYSGINKMSVQNLATVFGPNILRPKVEDPLT 62

Query: 1063 IMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSSVG--------- 1215
            IM GT  +Q++M++MI  H+ LFPK  +                  ++++G         
Sbjct: 63   IMEGTVVVQQLMSVMISKHDHLFPKDAELQSKPQDGVSSNNNDLQKKATMGQLQNKENTT 122

Query: 1216 ----------WDASEDPPISRTDSINNMASDSDATSPTGQRPN 1314
                      WD SE P  S  D       +   T+P+G + N
Sbjct: 123  TKDSPGRRCSWDKSESPQRSSVD-------NGSPTAPSGSKTN 158


>ref|XP_003357132.1| PREDICTED: protein FAM13A-like [Sus scrofa].
          Length = 284

 Score =  100 bits (250), Expect = 2e-21
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
 Frame = +1

Query: 538  VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFD 717
            +FG  L E   ++Q    + VP +V    E++  HGL +EG+FR+ G   +V++LR   +
Sbjct: 40   LFGVSLQEL--HQQGLTENGVPAVVRSLVEYLTMHGLTQEGLFRVNGNVKVVERLRWQLE 97

Query: 718  AGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVK 897
            +G       D DV + ASLLKL+LR+LPE V+  + +  F+   QL   D   AQ+  ++
Sbjct: 98   SGAPVELGTDGDVSSAASLLKLFLRELPERVITSALHPRFI---QLFQDDRHDAQESSLR 154

Query: 898  QL-SILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 1029
             L   LP  +Y LL Y+C+FL ++  +   N+M++ NLATV G N
Sbjct: 155  DLIKELPDPHYCLLKYLCQFLTKVARHHVQNRMNLHNLATVFGPN 199


>ref|XP_003122873.2| PREDICTED: rho GTPase-activating protein 1 [Sus scrofa].
          Length = 439

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 61/188 (32%), Positives = 103/188 (54%), Gaps = 4/188 (2%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +P+++ +   ++  H L  EGIFR      +V++++  ++ G   +FD+  ++H  A +L
Sbjct: 259  IPLVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVIL 318

Query: 778  KLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYIC 948
            K +LR+LPEP++ +  Y    GFL      + DE++  Q  ++    LP +NY +L ++ 
Sbjct: 319  KTFLRELPEPLLTFDLYSHVVGFL------SIDESQRVQATLQVFQTLPEENYLVLRFLT 372

Query: 949  RFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHE-V 1125
             FL +I   C  NKM+  NLA V G NL+ +K  D A+ ++    I    T  + DH+  
Sbjct: 373  AFLVQISALCDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTKFLLDHQGE 429

Query: 1126 LFPKSKDA 1149
            LFP S DA
Sbjct: 430  LFP-SPDA 436


>ref|NP_001191312.1| rho GTPase-activating protein 8 [Sus scrofa].
          Length = 486

 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 50/147 (34%), Positives = 83/147 (56%)
 Frame = +1

Query: 595  LVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASL 774
            L+P ++     ++ E GL  EG+FR       V++++  ++ G+  NFD   D+H  A +
Sbjct: 264  LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPMNFDDYGDIHVPAVI 323

Query: 775  LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRF 954
            LK +LR+LP+P++ +  YE  L    + ++      +++   L  LP  NY++LSY+  F
Sbjct: 324  LKTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCRQI---LQSLPGHNYAVLSYLMGF 380

Query: 955  LHEIQLNCGVNKMSVDNLATVIGVNLI 1035
            LHE+      NKM+  NLA V G+NLI
Sbjct: 381  LHEVSRESIFNKMNSSNLACVFGLNLI 407


>ref|XP_003361237.1| PREDICTED: n-chimaerin-like [Sus scrofa].
          Length = 334

 Score = 92.4 bits (228), Expect = 7e-19
 Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
 Frame = +1

Query: 601  PILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDA-GERPNFDRDT--DVHTVAS 771
            P++V+ C   I   GLN EG++R+ G  +L++ ++ AFD  GE+ +   +   D++ +  
Sbjct: 157  PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 216

Query: 772  LLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICR 951
             LKLY RDLP P++ +  Y  F+   ++M+ DE    + L + L +LP  +   L Y+  
Sbjct: 217  ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDE--QLETLHEALKLLPPAHCETLRYLMA 274

Query: 952  FLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
             L  + L+   N M+ +NL  V G  L+RS   D    +      + V+ ++I++ ++LF
Sbjct: 275  HLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 334


>ref|XP_003130497.2| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2, partial [Sus
            scrofa].
          Length = 880

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 2/185 (1%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERP--NFDRDTDVHTVAS 771
            +P++VE C  FI  HGL  EGIFR+ G    V  +++AF+ GE P      D D+ ++A 
Sbjct: 440  IPLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAG 499

Query: 772  LLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICR 951
            +LKLY R L  P+ P   +   + C  + N  E      + K L +LP+    ++ Y+  
Sbjct: 500  VLKLYFRGLEHPLFPKDIFHDLMACVTMDNLQERAL--HIRKVLLVLPKTTLIIMRYLFA 557

Query: 952  FLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
            FL+ +      N M   NLA   G +L+        V  +    +  ++  +I  HE +F
Sbjct: 558  FLNHLSQFSEENMMDPYNLAICFGPSLMSVPEGHDQVSCQA--HVNELIKTIIIQHENVF 615

Query: 1132 PKSKD 1146
            P  ++
Sbjct: 616  PNPRE 620


>ref|XP_003355553.1| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like [Sus
            scrofa].
          Length = 735

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
 Frame = +1

Query: 595  LVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDT--DVHTVA 768
            ++P++VE C  FI  +GL  +GIFR+ G    V  ++++F+ GE P  D  +  D+++VA
Sbjct: 168  VIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENPLADDQSNHDINSVA 227

Query: 769  SLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYIC 948
             +LKLY R L  P+ P  ++   + C ++ N  E      + K L  LPR    ++ Y+ 
Sbjct: 228  GVLKLYFRGLENPLFPKERFNDLISCIRIDNLYERAL--HIRKLLLTLPRSVLVVMRYLF 285

Query: 949  RFLHEIQLNCGVNKMSVDNLATVIGVNLIR-SKVEDPAVIMRGTPQIQRVMTMMIRDHEV 1125
             FL+ +      N M   NLA   G  L+   +++D          +  ++  +I  HE 
Sbjct: 286  AFLNHLSQYSDENMMDPYNLAICFGPTLMPVPEIQDQVSCQ---AHVNEIVKTIIIHHET 342

Query: 1126 LFPKSKD 1146
            +FP +K+
Sbjct: 343  IFPDAKE 349


>ref|XP_003135532.1| PREDICTED: rho GTPase-activating protein 4 [Sus scrofa].
          Length = 956

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 7/188 (3%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDT--DVHTVAS 771
            VP++VE C  FI  +GL  EGIFR+ G    V ++RDAF+ GE P  +  T  D+ +VA 
Sbjct: 532  VPLVVESCIRFINLNGLQHEGIFRVSGAQPRVSEIRDAFERGEDPLEEGCTAHDLDSVAG 591

Query: 772  LLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSI----LPRDNYSLLS 939
            +LKLY R L  P+ P        L G+L+   E +AQ E V+Q+S     LP     +L 
Sbjct: 592  VLKLYFRSLQPPIFPPD------LFGELLAPAELEAQAERVEQVSSLLARLPGPVLVVLR 645

Query: 940  YICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKV-EDPAVIMRGTPQIQRVMTMMIRD 1116
            Y+  FL+ +      N M   NLA   G  L+     +DP  +     Q+  V T++++ 
Sbjct: 646  YLFTFLNHLAQYSDENMMDPYNLAVCFGPTLLPVPAGQDPVALQARVNQL--VQTLIVQP 703

Query: 1117 HEVLFPKS 1140
              V  P S
Sbjct: 704  ARVFPPLS 711


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,879,779
Number of extensions: 1365512
Number of successful extensions: 5882
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 5788
Number of HSP's successfully gapped: 71
Length of query: 597
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 492
Effective length of database: 8,729,747
Effective search space: 4295035524
Effective search space used: 4295035524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008317
         (1792 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001032816.1| rho GTPase-activating protein 25 isoform a [...   899   0.0  
Alignment   gi|NP_780685.2| rho GTPase-activating protein 25 isoform b [Mus...   889   0.0  
Alignment   gi|NP_722495.3| rho GTPase-activating protein 22 [Mus musculus].     392   e-109
Alignment   gi|NP_083546.2| rho GTPase-activating protein 24 isoform 1 [Mus...   360   2e-99
Alignment   gi|NP_666273.1| rho GTPase-activating protein 24 isoform 2 [Mus...   286   3e-77
Alignment   gi|NP_001139374.1| rho GTPase-activating protein 1 isoform 1 [M...   102   1e-21
Alignment   gi|NP_666236.3| rho GTPase-activating protein 1 isoform 2 [Mus ...   102   1e-21
Alignment   gi|NP_083992.1| N-chimaerin isoform 2 [Mus musculus].                 95   2e-19
Alignment   gi|NP_786928.2| N-chimaerin isoform 1 [Mus musculus].                 95   2e-19
Alignment   gi|NP_001106717.2| N-chimaerin isoform 3 [Mus musculus].              95   2e-19

>ref|NP_001032816.1| rho GTPase-activating protein 25 isoform a [Mus musculus].
          Length = 648

 Score =  899 bits (2323), Expect = 0.0
 Identities = 451/536 (84%), Positives = 474/536 (88%)
 Frame = +1

Query: 130  ARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 309
            ARSRSVMTGEQMAAFHP ++PNPLERPIK+GWLKKQRSIVKNWQQRYFVLRAQQLYYYKD
Sbjct: 21   ARSRSVMTGEQMAAFHPPTTPNPLERPIKVGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 80

Query: 310  EEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEME 489
            EED KPQG MYLPGST+KEIATNPEEAGKFVFEVIPAS DQ+R GQDSYVLMASSQ EME
Sbjct: 81   EEDSKPQGCMYLPGSTVKEIATNPEEAGKFVFEVIPASSDQNRIGQDSYVLMASSQVEME 140

Query: 490  EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFR 669
            EWVKFLRRVAGTP GAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHG++EEGIFR
Sbjct: 141  EWVKFLRRVAGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFR 200

Query: 670  LPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 849
            LPGQDNLVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG
Sbjct: 201  LPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 260

Query: 850  QLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 1029
            QLMNADEAKAQQELVKQLS LPRDNY+LLSYICRFLHEIQLNC VNKMSVDNLATVIGVN
Sbjct: 261  QLMNADEAKAQQELVKQLSTLPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVN 320

Query: 1030 LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSS 1209
            LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAP+S            V RSS
Sbjct: 321  LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPISPPAQKNDAKKAPVPRSS 380

Query: 1210 VGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKR 1389
            VGWDA+EDPP+SRTDS +N AS  DATSPTG  P+D   EDS KA +E PGDWKMQSRKR
Sbjct: 381  VGWDATEDPPLSRTDSFSNTASSPDATSPTGPLPSDQHQEDSGKAPRENPGDWKMQSRKR 440

Query: 1390 TQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRT 1569
            TQTLPNRKCFLTSA QG  S K E+ KNEF SPSSEAKAGEGHRRTMSQ +    + QRT
Sbjct: 441  TQTLPNRKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQDLRHLSNDQRT 500

Query: 1570 STYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQR 1737
            STYDNVP  P S G+ A ALSP A DSKRDA  S +SE  AG KNSGE++L+S QR
Sbjct: 501  STYDNVPTSPQSQGNPAGALSPPASDSKRDALVSTDSEMEAGSKNSGEDDLDSLQR 556


>ref|NP_780685.2| rho GTPase-activating protein 25 isoform b [Mus musculus].
          Length = 622

 Score =  889 bits (2297), Expect = 0.0
 Identities = 445/530 (83%), Positives = 468/530 (88%)
 Frame = +1

Query: 148  MTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDVKP 327
            MTGEQMAAFHP ++PNPLERPIK+GWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEED KP
Sbjct: 1    MTGEQMAAFHPPTTPNPLERPIKVGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDSKP 60

Query: 328  QGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEMEEWVKFL 507
            QG MYLPGST+KEIATNPEEAGKFVFEVIPAS DQ+R GQDSYVLMASSQ EMEEWVKFL
Sbjct: 61   QGCMYLPGSTVKEIATNPEEAGKFVFEVIPASSDQNRIGQDSYVLMASSQVEMEEWVKFL 120

Query: 508  RRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDN 687
            RRVAGTP GAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHG++EEGIFRLPGQDN
Sbjct: 121  RRVAGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDN 180

Query: 688  LVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNAD 867
            LVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNAD
Sbjct: 181  LVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNAD 240

Query: 868  EAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKV 1047
            EAKAQQELVKQLS LPRDNY+LLSYICRFLHEIQLNC VNKMSVDNLATVIGVNLIRSKV
Sbjct: 241  EAKAQQELVKQLSTLPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKV 300

Query: 1048 EDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSSVGWDAS 1227
            EDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAP+S            V RSSVGWDA+
Sbjct: 301  EDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPISPPAQKNDAKKAPVPRSSVGWDAT 360

Query: 1228 EDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKRTQTLPN 1407
            EDPP+SRTDS +N AS  DATSPTG  P+D   EDS KA +E PGDWKMQSRKRTQTLPN
Sbjct: 361  EDPPLSRTDSFSNTASSPDATSPTGPLPSDQHQEDSGKAPRENPGDWKMQSRKRTQTLPN 420

Query: 1408 RKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRTSTYDNV 1587
            RKCFLTSA QG  S K E+ KNEF SPSSEAKAGEGHRRTMSQ +    + QRTSTYDNV
Sbjct: 421  RKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQDLRHLSNDQRTSTYDNV 480

Query: 1588 PVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQR 1737
            P  P S G+ A ALSP A DSKRDA  S +SE  AG KNSGE++L+S QR
Sbjct: 481  PTSPQSQGNPAGALSPPASDSKRDALVSTDSEMEAGSKNSGEDDLDSLQR 530


>ref|NP_722495.3| rho GTPase-activating protein 22 [Mus musculus].
          Length = 702

 Score =  392 bits (1008), Expect = e-109
 Identities = 225/533 (42%), Positives = 312/533 (58%), Gaps = 8/533 (1%)
 Frame = +1

Query: 133  RSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDE 312
            RS+S++ GEQ  +      P+ L   +K GWL+KQRSI+KNWQQR+FVLR  QL+YYKD+
Sbjct: 19   RSKSLVMGEQSRSPGRPLVPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDK 78

Query: 313  EDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSR---TGQDSYVLMASSQAE 483
            ++ KPQG++ L G+ + E+  +PE+ GK +FE+ P    +        ++ +LMASSQ +
Sbjct: 79   DESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGGATEREKVPANPEALLLMASSQRD 138

Query: 484  MEEWVKFLRRVAGTPCG-AVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEG 660
            ME+WV+ +RRV   P G  +FGQRL++TV +E+KFGP L P+LVE+C +FI E GL+EEG
Sbjct: 139  MEDWVQAIRRVIWAPLGRGIFGQRLEDTVHHERKFGPRLAPLLVEQCVDFIRERGLSEEG 198

Query: 661  IFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFL 840
            +FR+PGQ NLV+ L+D+FD GE+P FD  TDVHTVASLLKLYLR+LPEPV+P+++YE FL
Sbjct: 199  LFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFL 258

Query: 841  LCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVI 1020
             C QL+  DE +   EL KQ+S LP+ NY+LL YIC+FL E+Q +  VNKMSV NLATV 
Sbjct: 259  SCAQLLTKDEGEGTVELAKQVSNLPQANYNLLRYICKFLDEVQAHSDVNKMSVQNLATVF 318

Query: 1021 GVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVA 1200
            G N++R ++EDP  IM GT  +Q +MT++IR H  LF  +     +            V 
Sbjct: 319  GPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFAATSLEEPASPHGTVEWGSEEVT 378

Query: 1201 RSSVGWDASEDPPISRTDSINN-MASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQ 1377
            R   G   S   P  RT S++   A+    TSP       G    S          WK  
Sbjct: 379  RDHRGEPGSPGLPTHRTSSLDGPAAAVLSRTSPPRLGSQTGPAATSPGKKMHTLPVWKSS 438

Query: 1378 SRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFD 1557
             R++     + K   +S      S     + N   S  S  +A  G R      +     
Sbjct: 439  FRQQGSRSESPKGVNSSLEVPIISSGGNWLINGLSSLRSHRRASSGDR------LKDTGS 492

Query: 1558 TQRTSTYDNVPVQPXSPGDKADALSPQAY---DSKRDAPGSPNSEARAGKKNS 1707
             QR STYDNVP  P S      +++  ++    S R+A  S  +  RA   ++
Sbjct: 493  AQRLSTYDNVP--PSSQFSSTASVASTSWSVASSSREASVSSCTACRASNSSA 543


>ref|NP_083546.2| rho GTPase-activating protein 24 isoform 1 [Mus musculus].
          Length = 747

 Score =  360 bits (924), Expect = 2e-99
 Identities = 174/313 (55%), Positives = 231/313 (73%), Gaps = 2/313 (0%)
 Frame = +1

Query: 214  KMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNPEEAG 393
            K GWL+KQ   VK W  R+FVL+  QLYY+KDE++ KP G ++L G+ + E   N E  G
Sbjct: 20   KCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLHGNKVIEHPCNEENPG 79

Query: 394  KFVFEVIPAS-CDQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETV 567
            KF+FEV+P    D+     +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV
Sbjct: 80   KFLFEVVPGGERDRMTANHESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTV 139

Query: 568  AYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRD 747
             YE+++G  L P+LVE+C +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +
Sbjct: 140  RYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSN 199

Query: 748  TDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNY 927
            TDVHTVASLLKLYLR+LPEPVVP+++YE FL C  L++ +E    +EL+KQ+  LP  NY
Sbjct: 200  TDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCATLLSKEEEAGVKELMKQVKSLPVVNY 259

Query: 928  SLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMM 1107
            +LL YICRFL E+Q   GVNKMS  NLATV G N++R KVEDP  IM GT  +Q++M++M
Sbjct: 260  NLLKYICRFLDEVQSYSGVNKMSAQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVM 319

Query: 1108 IRDHEVLFPKSKD 1146
            I  H+ LFPK  +
Sbjct: 320  ISKHDRLFPKDTE 332


>ref|NP_666273.1| rho GTPase-activating protein 24 isoform 2 [Mus musculus].
          Length = 654

 Score =  286 bits (733), Expect = 3e-77
 Identities = 138/234 (58%), Positives = 182/234 (77%), Gaps = 1/234 (0%)
 Frame = +1

Query: 448  DSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVPILVEKCA 624
            +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV YE+++G  L P+LVE+C 
Sbjct: 6    ESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCV 65

Query: 625  EFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPE 804
            +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +TDVHTVASLLKLYLR+LPE
Sbjct: 66   DFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPE 125

Query: 805  PVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGV 984
            PVVP+++YE FL C  L++ +E    +EL+KQ+  LP  NY+LL YICRFL E+Q   GV
Sbjct: 126  PVVPYAKYEDFLSCATLLSKEEEAGVKELMKQVKSLPVVNYNLLKYICRFLDEVQSYSGV 185

Query: 985  NKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD 1146
            NKMS  NLATV G N++R KVEDP  IM GT  +Q++M++MI  H+ LFPK  +
Sbjct: 186  NKMSAQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDRLFPKDTE 239


>ref|NP_001139374.1| rho GTPase-activating protein 1 isoform 1 [Mus musculus].
          Length = 479

 Score =  102 bits (254), Expect = 1e-21
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 4/193 (2%)
 Frame = +1

Query: 574  EQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTD 753
            E+  G   +PI++ +   ++  H L  EGIFR      +V++++  ++ G   +FD+  +
Sbjct: 291  EKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNE 350

Query: 754  VHTVASLLKLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDN 924
            +H  A +LK +LR+LPEP++ +  Y    GFL      N DE++  +   + L  LP +N
Sbjct: 351  LHLPAVILKTFLRELPEPLLTFDLYPHVVGFL------NIDESQRVEVTQQVLQTLPEEN 404

Query: 925  YSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTM 1104
            Y +L ++  FL +I  +C  NKM+  NLA V G NL+ +K  D A+ ++    I    T 
Sbjct: 405  YQVLHFLTAFLVQISAHCDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTK 461

Query: 1105 MIRDHE-VLFPKS 1140
             + DH+  LFP +
Sbjct: 462  FLLDHQGELFPST 474


>ref|NP_666236.3| rho GTPase-activating protein 1 isoform 2 [Mus musculus].
          Length = 439

 Score =  102 bits (254), Expect = 1e-21
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 4/193 (2%)
 Frame = +1

Query: 574  EQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTD 753
            E+  G   +PI++ +   ++  H L  EGIFR      +V++++  ++ G   +FD+  +
Sbjct: 251  EKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNE 310

Query: 754  VHTVASLLKLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDN 924
            +H  A +LK +LR+LPEP++ +  Y    GFL      N DE++  +   + L  LP +N
Sbjct: 311  LHLPAVILKTFLRELPEPLLTFDLYPHVVGFL------NIDESQRVEVTQQVLQTLPEEN 364

Query: 925  YSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTM 1104
            Y +L ++  FL +I  +C  NKM+  NLA V G NL+ +K  D A+ ++    I    T 
Sbjct: 365  YQVLHFLTAFLVQISAHCDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTK 421

Query: 1105 MIRDHE-VLFPKS 1140
             + DH+  LFP +
Sbjct: 422  FLLDHQGELFPST 434


>ref|NP_083992.1| N-chimaerin isoform 2 [Mus musculus].
          Length = 210

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
 Frame = +1

Query: 601  PILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDA-GERPNFDRDT--DVHTVAS 771
            P++V+ C   I   GLN EG++R+ G  +L++ ++ AFD  GE+ +   +   D++ +  
Sbjct: 33   PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 92

Query: 772  LLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICR 951
             LKLY RDLP P++ +  Y  F+   ++M+ DE    + L + L  LP  +   L Y+  
Sbjct: 93   ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQL--ETLHEALRSLPPAHCETLRYLMA 150

Query: 952  FLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
             L  + L+   N MS +NL  V G  L+RS   DP   +      + V+ ++I++ ++LF
Sbjct: 151  HLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 210


>ref|NP_786928.2| N-chimaerin isoform 1 [Mus musculus].
          Length = 334

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
 Frame = +1

Query: 601  PILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDA-GERPNFDRDT--DVHTVAS 771
            P++V+ C   I   GLN EG++R+ G  +L++ ++ AFD  GE+ +   +   D++ +  
Sbjct: 157  PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 216

Query: 772  LLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICR 951
             LKLY RDLP P++ +  Y  F+   ++M+ DE    + L + L  LP  +   L Y+  
Sbjct: 217  ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQL--ETLHEALRSLPPAHCETLRYLMA 274

Query: 952  FLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
             L  + L+   N MS +NL  V G  L+RS   DP   +      + V+ ++I++ ++LF
Sbjct: 275  HLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 334


>ref|NP_001106717.2| N-chimaerin isoform 3 [Mus musculus].
          Length = 459

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
 Frame = +1

Query: 601  PILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDA-GERPNFDRDT--DVHTVAS 771
            P++V+ C   I   GLN EG++R+ G  +L++ ++ AFD  GE+ +   +   D++ +  
Sbjct: 282  PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 341

Query: 772  LLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICR 951
             LKLY RDLP P++ +  Y  F+   ++M+ DE    + L + L  LP  +   L Y+  
Sbjct: 342  ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQL--ETLHEALRSLPPAHCETLRYLMA 399

Query: 952  FLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
             L  + L+   N MS +NL  V G  L+RS   DP   +      + V+ ++I++ ++LF
Sbjct: 400  HLKRVTLHEKENLMSAENLGIVFGPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 459


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,848,170
Number of extensions: 1784299
Number of successful extensions: 7368
Number of sequences better than 1.0e-05: 114
Number of HSP's gapped: 7184
Number of HSP's successfully gapped: 114
Length of query: 597
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 490
Effective length of database: 12,403,707
Effective search space: 6077816430
Effective search space used: 6077816430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008317
         (1792 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001159748.1| rho GTPase-activating protein 25 isoform c [...   936   0.0  
Alignment   gi|NP_055697.1| rho GTPase-activating protein 25 isoform b [Hom...   930   0.0  
Alignment   gi|NP_001007232.2| rho GTPase-activating protein 25 isoform a [...   924   0.0  
Alignment   gi|NP_001159749.1| rho GTPase-activating protein 25 isoform d [...   832   0.0  
Alignment   gi|NP_067049.2| rho GTPase-activating protein 22 [Homo sapiens].     409   e-114
Alignment   gi|NP_001020787.2| rho GTPase-activating protein 24 isoform 1 [...   370   e-102
Alignment   gi|NP_001036134.1| rho GTPase-activating protein 24 isoform 3 [...   290   3e-78
Alignment   gi|NP_112595.2| rho GTPase-activating protein 24 isoform 2 [Hom...   260   3e-69
Alignment   gi|NP_055698.2| family with sequence similarity 13, member A1 i...    98   2e-20
Alignment   gi|NP_004299.1| rho GTPase-activating protein 1 [Homo sapiens].       97   4e-20

>ref|NP_001159748.1| rho GTPase-activating protein 25 isoform c [Homo sapiens].
          Length = 639

 Score =  936 bits (2419), Expect = 0.0
 Identities = 470/548 (85%), Positives = 490/548 (89%)
 Frame = +1

Query: 100  GQLACLSLSTARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVL 279
            GQ ACL LS ARSRSVMTGEQMAAFHP+S+PNPLERPIKMGWLKKQRSIVKNWQQRYFVL
Sbjct: 4    GQSACLFLSIARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVL 63

Query: 280  RAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYV 459
            RAQQLYYYKDEED KPQG MYLPG TIKEIATNPEEAGKFVFE+IPAS DQ+R GQDSYV
Sbjct: 64   RAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYV 123

Query: 460  LMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILE 639
            LMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILE
Sbjct: 124  LMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILE 183

Query: 640  HGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPW 819
            HG NEEGIFRLPGQDNLVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPW
Sbjct: 184  HGRNEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPW 243

Query: 820  SQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSV 999
            SQYEGFLLCGQL NADEAKAQQEL+KQLSILPRDNYSLLSYICRFLHEIQLNC VNKMSV
Sbjct: 244  SQYEGFLLCGQLTNADEAKAQQELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSV 303

Query: 1000 DNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXX 1179
            DNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD PLS       
Sbjct: 304  DNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDIPLSPPAQKND 363

Query: 1180 XXXXXVARSSVGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKP 1359
                 VARSSVGWDA+ED  ISRTDS ++M SDSD TSPTGQ+P+D   EDS K  +EKP
Sbjct: 364  PKKAPVARSSVGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPEDSSKVPREKP 423

Query: 1360 GDWKMQSRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQG 1539
            GDWKMQSRKRTQTLPNRKCFLTSA QGANS K E+ KNEF SPSSEAKAGEGHRRTMSQ 
Sbjct: 424  GDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQD 483

Query: 1540 VPQFFDTQRTSTYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEE 1719
            + Q  D+QRTSTYDNVP  P SPG++A ALS QA DSK D   SPNSE   GKKNSGEEE
Sbjct: 484  LRQLSDSQRTSTYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEE 543

Query: 1720 LESFQRML 1743
            ++S QRM+
Sbjct: 544  IDSLQRMV 551


>ref|NP_055697.1| rho GTPase-activating protein 25 isoform b [Homo sapiens].
          Length = 638

 Score =  930 bits (2403), Expect = 0.0
 Identities = 469/548 (85%), Positives = 489/548 (89%)
 Frame = +1

Query: 100  GQLACLSLSTARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVL 279
            GQ ACL LS ARSRSVMTGEQMAAFHP+S+PNPLERPIKMGWLKKQRSIVKNWQQRYFVL
Sbjct: 4    GQSACLFLSIARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVL 63

Query: 280  RAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYV 459
            RAQQLYYYKDEED KPQG MYLPG TIKEIATNPEEAGKFVFE+IPAS DQ+R GQDSYV
Sbjct: 64   RAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYV 123

Query: 460  LMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILE 639
            LMASSQAEMEEWVKFLRRVAGTPCG VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILE
Sbjct: 124  LMASSQAEMEEWVKFLRRVAGTPCG-VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILE 182

Query: 640  HGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPW 819
            HG NEEGIFRLPGQDNLVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPW
Sbjct: 183  HGRNEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPW 242

Query: 820  SQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSV 999
            SQYEGFLLCGQL NADEAKAQQEL+KQLSILPRDNYSLLSYICRFLHEIQLNC VNKMSV
Sbjct: 243  SQYEGFLLCGQLTNADEAKAQQELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSV 302

Query: 1000 DNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXX 1179
            DNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD PLS       
Sbjct: 303  DNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDIPLSPPAQKND 362

Query: 1180 XXXXXVARSSVGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKP 1359
                 VARSSVGWDA+ED  ISRTDS ++M SDSD TSPTGQ+P+D   EDS K  +EKP
Sbjct: 363  PKKAPVARSSVGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPEDSSKVPREKP 422

Query: 1360 GDWKMQSRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQG 1539
            GDWKMQSRKRTQTLPNRKCFLTSA QGANS K E+ KNEF SPSSEAKAGEGHRRTMSQ 
Sbjct: 423  GDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQD 482

Query: 1540 VPQFFDTQRTSTYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEE 1719
            + Q  D+QRTSTYDNVP  P SPG++A ALS QA DSK D   SPNSE   GKKNSGEEE
Sbjct: 483  LRQLSDSQRTSTYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEE 542

Query: 1720 LESFQRML 1743
            ++S QRM+
Sbjct: 543  IDSLQRMV 550


>ref|NP_001007232.2| rho GTPase-activating protein 25 isoform a [Homo sapiens].
          Length = 646

 Score =  924 bits (2388), Expect = 0.0
 Identities = 463/538 (86%), Positives = 483/538 (89%)
 Frame = +1

Query: 130  ARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 309
            ARSRSVMTGEQMAAFHP+S+PNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD
Sbjct: 21   ARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 80

Query: 310  EEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEME 489
            EED KPQG MYLPG TIKEIATNPEEAGKFVFE+IPAS DQ+R GQDSYVLMASSQAEME
Sbjct: 81   EEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEME 140

Query: 490  EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFR 669
            EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHG NEEGIFR
Sbjct: 141  EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFR 200

Query: 670  LPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 849
            LPGQDNLVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG
Sbjct: 201  LPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 260

Query: 850  QLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 1029
            QL NADEAKAQQEL+KQLSILPRDNYSLLSYICRFLHEIQLNC VNKMSVDNLATVIGVN
Sbjct: 261  QLTNADEAKAQQELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVN 320

Query: 1030 LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSS 1209
            LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD PLS            VARSS
Sbjct: 321  LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDIPLSPPAQKNDPKKAPVARSS 380

Query: 1210 VGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKR 1389
            VGWDA+ED  ISRTDS ++M SDSD TSPTGQ+P+D   EDS K  +EKPGDWKMQSRKR
Sbjct: 381  VGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPEDSSKVPREKPGDWKMQSRKR 440

Query: 1390 TQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRT 1569
            TQTLPNRKCFLTSA QGANS K E+ KNEF SPSSEAKAGEGHRRTMSQ + Q  D+QRT
Sbjct: 441  TQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRT 500

Query: 1570 STYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQRML 1743
            STYDNVP  P SPG++A ALS QA DSK D   SPNSE   GKKNSGEEE++S QRM+
Sbjct: 501  STYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEEIDSLQRMV 558


>ref|NP_001159749.1| rho GTPase-activating protein 25 isoform d [Homo sapiens].
          Length = 606

 Score =  832 bits (2148), Expect = 0.0
 Identities = 426/538 (79%), Positives = 445/538 (82%)
 Frame = +1

Query: 130  ARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 309
            ARSRSVMTGEQMAAFHP+S+PNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD
Sbjct: 21   ARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 80

Query: 310  EEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEME 489
            EED KPQG MYLPG TIKEIATNPEEAGKFVFE+IP                        
Sbjct: 81   EEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIP------------------------ 116

Query: 490  EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFR 669
                            VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHG NEEGIFR
Sbjct: 117  ----------------VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFR 160

Query: 670  LPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 849
            LPGQDNLVKQLRDAFDAGERP+FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG
Sbjct: 161  LPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCG 220

Query: 850  QLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVN 1029
            QL NADEAKAQQEL+KQLSILPRDNYSLLSYICRFLHEIQLNC VNKMSVDNLATVIGVN
Sbjct: 221  QLTNADEAKAQQELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVN 280

Query: 1030 LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSS 1209
            LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKD PLS            VARSS
Sbjct: 281  LIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDIPLSPPAQKNDPKKAPVARSS 340

Query: 1210 VGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKR 1389
            VGWDA+ED  ISRTDS ++M SDSD TSPTGQ+P+D   EDS K  +EKPGDWKMQSRKR
Sbjct: 341  VGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPEDSSKVPREKPGDWKMQSRKR 400

Query: 1390 TQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRT 1569
            TQTLPNRKCFLTSA QGANS K E+ KNEF SPSSEAKAGEGHRRTMSQ + Q  D+QRT
Sbjct: 401  TQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRT 460

Query: 1570 STYDNVPVQPXSPGDKADALSPQAYDSKRDAPGSPNSEARAGKKNSGEEELESFQRML 1743
            STYDNVP  P SPG++A ALS QA DSK D   SPNSE   GKKNSGEEE++S QRM+
Sbjct: 461  STYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEEIDSLQRMV 518


>ref|NP_067049.2| rho GTPase-activating protein 22 [Homo sapiens].
          Length = 698

 Score =  409 bits (1051), Expect = e-114
 Identities = 231/511 (45%), Positives = 307/511 (60%), Gaps = 17/511 (3%)
 Frame = +1

Query: 130  ARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 309
            ARS+S++ GEQ  +      P+ L   +K GWLKKQRSI+KNWQQR+FVLR  QL+YYKD
Sbjct: 12   ARSKSLVMGEQSRSPGRMPCPHRLGPVLKAGWLKKQRSIMKNWQQRWFVLRGDQLFYYKD 71

Query: 310  EEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSR---TGQDSYVLMASSQA 480
            ++++KPQG++ L G+ + E+   PE+ GK +FE+ P    +        ++ +LMASSQ 
Sbjct: 72   KDEIKPQGFISLQGTQVTELPPGPEDPGKHLFEISPGGAGEREKVPANPEALLLMASSQR 131

Query: 481  EMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEE 657
            +ME+WV+ +RRV   P G  +FGQRL+ETV +E+K+GP L P+LVE+C +FI E GL EE
Sbjct: 132  DMEDWVQAIRRVIWAPLGGGIFGQRLEETVHHERKYGPRLAPLLVEQCVDFIRERGLTEE 191

Query: 658  GIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGF 837
            G+FR+PGQ NLV+ L+D+FD GE+P FD  TDVHTVASLLKLYLR+LPEPVVP+++YE F
Sbjct: 192  GLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVVPFARYEDF 251

Query: 838  LLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATV 1017
            L C QL+  DE +   EL KQ+S LP+ NY+LL YIC+FL E+Q    VNKMSV NLATV
Sbjct: 252  LSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATV 311

Query: 1018 IGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF----PKSKDAPLSXXXXXXXXX 1185
             G N++R +VEDP  IM GT  +Q +MT++IR H  LF    P+   +P           
Sbjct: 312  FGPNILRPQVEDPVTIMEGTSLVQHLMTVLIRKHSQLFTAPVPEGPTSPRGGLQCAVGWG 371

Query: 1186 XXXVARSSVGWDASEDPPISRTDSINNMA-SDSDATSPTGQRPNDGCLEDSIKASKEKPG 1362
               V R S G       P  RT S++  A +    T+PTG  P   C           PG
Sbjct: 372  SEEVTRDSQGEPGGPGLPAHRTSSLDGAAVAVLSRTAPTG--PGSRC----------SPG 419

Query: 1363 DWKMQSRKRTQTLPNRKCFLT-------SALQGANSCKTEVIKNEFCSPSSEAKAGEGHR 1521
                   K+ QTLP+ K           S   G +S +  +I +      +   +  GHR
Sbjct: 420  -------KKVQTLPSWKSSFRQPRSLSGSPKGGGSSLEVPIISSGGNWLMNGLSSLRGHR 472

Query: 1522 RTMS-QGVPQFFDTQRTSTYDNVPVQPXSPG 1611
            R  S   +      QR STYDNVP     PG
Sbjct: 473  RASSGDRLKDSGSVQRLSTYDNVPAPGLVPG 503


>ref|NP_001020787.2| rho GTPase-activating protein 24 isoform 1 [Homo sapiens].
          Length = 748

 Score =  370 bits (950), Expect = e-102
 Identities = 186/375 (49%), Positives = 251/375 (66%), Gaps = 2/375 (0%)
 Frame = +1

Query: 202  ERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNP 381
            +  IK GWL+KQ   VK W  R+FVL+  QLYY+KDE++ KP G ++LPG+ + E   N 
Sbjct: 18   QNAIKCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNKVSEHPCNE 77

Query: 382  EEAGKFVFEVIPASC-DQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRL 555
            E  GKF+FEV+P    D+     +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L
Sbjct: 78   ENPGKFLFEVVPGGDRDRMTANHESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKL 137

Query: 556  DETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPN 735
            ++TV YE+++G  L P+LVE+C +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+
Sbjct: 138  EDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPS 197

Query: 736  FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILP 915
            FD +TDVHTVASLLKLYLR+LPEPV+P+++YE FL C +L++ +E    +EL KQ+  LP
Sbjct: 198  FDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLP 257

Query: 916  RDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRV 1095
              NY+LL YICRFL E+Q   GVNKMSV NLATV G N++R KVEDP  IM GT  +Q++
Sbjct: 258  VVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQL 317

Query: 1096 MTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSSVGWDASEDPPISRTDSINNMAS 1275
            M++MI  H+ LFP  KDA L             + + +           +  DS +   S
Sbjct: 318  MSVMISKHDCLFP--KDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDSPSRQCS 375

Query: 1276 DSDATSPTGQRPNDG 1320
               + SP     N+G
Sbjct: 376  WDKSESPQRSSMNNG 390


>ref|NP_001036134.1| rho GTPase-activating protein 24 isoform 3 [Homo sapiens].
          Length = 653

 Score =  290 bits (742), Expect = 3e-78
 Identities = 148/292 (50%), Positives = 199/292 (68%), Gaps = 1/292 (0%)
 Frame = +1

Query: 448  DSYVLMASSQAEMEEWVKFLRRVAGTPCGA-VFGQRLDETVAYEQKFGPHLVPILVEKCA 624
            +SY+LMAS+Q +ME+WVK +RRV   P G  +FGQ+L++TV YE+++G  L P+LVE+C 
Sbjct: 6    ESYLLMASTQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCV 65

Query: 625  EFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPE 804
            +FI + GL EEG+FRLPGQ NLVK+L+DAFD GE+P+FD +TDVHTVASLLKLYLR+LPE
Sbjct: 66   DFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPE 125

Query: 805  PVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGV 984
            PV+P+++YE FL C +L++ +E    +EL KQ+  LP  NY+LL YICRFL E+Q   GV
Sbjct: 126  PVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGV 185

Query: 985  NKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSXX 1164
            NKMSV NLATV G N++R KVEDP  IM GT  +Q++M++MI  H+ LFP  KDA L   
Sbjct: 186  NKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFP--KDAELQSK 243

Query: 1165 XXXXXXXXXXVARSSVGWDASEDPPISRTDSINNMASDSDATSPTGQRPNDG 1320
                      + + +           +  DS +   S   + SP     N+G
Sbjct: 244  PQDGVSNNNEIQKKATMGQLQNKENNNTKDSPSRQCSWDKSESPQRSSMNNG 295


>ref|NP_112595.2| rho GTPase-activating protein 24 isoform 2 [Homo sapiens].
          Length = 655

 Score =  260 bits (665), Expect = 3e-69
 Identities = 131/261 (50%), Positives = 176/261 (67%)
 Frame = +1

Query: 538  VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFD 717
            +FGQ+L++TV YE+++G  L P+LVE+C +FI + GL EEG+FRLPGQ NLVK+L+DAFD
Sbjct: 39   IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD 98

Query: 718  AGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVK 897
             GE+P+FD +TDVHTVASLLKLYLR+LPEPV+P+++YE FL C +L++ +E    +EL K
Sbjct: 99   CGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAK 158

Query: 898  QLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGT 1077
            Q+  LP  NY+LL YICRFL E+Q   GVNKMSV NLATV G N++R KVEDP  IM GT
Sbjct: 159  QVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGT 218

Query: 1078 PQIQRVMTMMIRDHEVLFPKSKDAPLSXXXXXXXXXXXXVARSSVGWDASEDPPISRTDS 1257
              +Q++M++MI  H+ LFP  KDA L             + + +           +  DS
Sbjct: 219  VVVQQLMSVMISKHDCLFP--KDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDS 276

Query: 1258 INNMASDSDATSPTGQRPNDG 1320
             +   S   + SP     N+G
Sbjct: 277  PSRQCSWDKSESPQRSSMNNG 297


>ref|NP_055698.2| family with sequence similarity 13, member A1 isoform a [Homo
            sapiens].
          Length = 1023

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 1/179 (0%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +P +V    E++ +HGL +EG+FR+ G   +V+QLR  F++G      +D DV + ASLL
Sbjct: 58   IPAVVWNIVEYLTQHGLTQEGLFRVNGNVKVVEQLRLKFESGVPVELGKDGDVCSAASLL 117

Query: 778  KLYLRDLPEPVVPWSQYEGFL-LCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRF 954
            KL+LR+LP+ ++  +    F+ L     N  +  + ++L+K+   LP  +Y LL Y+C+F
Sbjct: 118  KLFLRELPDSLITSALQPRFIQLFQDGRNDVQESSLRDLIKE---LPDTHYCLLKYLCQF 174

Query: 955  LHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLF 1131
            L ++  +   N+M+V NLATV G N     V      M+      ++M  ++ ++  LF
Sbjct: 175  LTKVAKHHVQNRMNVHNLATVFGPNCFH--VPPGLEGMKEQDLCNKIMAKILENYNTLF 231


>ref|NP_004299.1| rho GTPase-activating protein 1 [Homo sapiens].
          Length = 439

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 4/183 (2%)
 Frame = +1

Query: 598  VPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLL 777
            +PI++ +   ++  H L  EGIFR      +V++++  ++ G   +FD+  ++H  A +L
Sbjct: 259  IPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVIL 318

Query: 778  KLYLRDLPEPVVPWSQYE---GFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYIC 948
            K +LR+LPEP++ +  Y    GFL      N DE++     ++ L  LP +NY +L ++ 
Sbjct: 319  KTFLRELPEPLLTFDLYPHVVGFL------NIDESQRVPATLQVLQTLPEENYQVLRFLT 372

Query: 949  RFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHE-V 1125
             FL +I  +   NKM+  NLA V G NL+ +K  D A+ ++    I    T  + DH+  
Sbjct: 373  AFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK--DAAITLKAINPI-NTFTKFLLDHQGE 429

Query: 1126 LFP 1134
            LFP
Sbjct: 430  LFP 432


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,427,367
Number of extensions: 2146930
Number of successful extensions: 9040
Number of sequences better than 1.0e-05: 123
Number of HSP's gapped: 8851
Number of HSP's successfully gapped: 124
Length of query: 597
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 489
Effective length of database: 14,737,052
Effective search space: 7206418428
Effective search space used: 7206418428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008317
         (1792 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                         973   0.0  
Sscrofa_Chr14                                                          62   1e-06

>Sscrofa_Chr03 
||          Length = 144787322

 Score =  973 bits (491), Expect = 0.0
 Identities = 516/522 (98%), Gaps = 2/522 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1271     ccagcgactccgacgcaaccagtcctactggacaacggccaaatgatgggtgtctagaag 1330
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77090335 ccagcgactccgacgcaaccagtcctactggacaacggccaaatgatgggtgtctagaag 77090394

                                                                            
Query: 1331     acagtatcaaagcgtccaaggaaaaaccaggagattggaagatgcaatcccgaaaaagga 1390
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77090395 acagtatcaaagcgtccaaggaaaaaccaggagattggaagatgcaatcccgaaaaagga 77090454

                                                                            
Query: 1391     ctcagacgctccctaaccggaaatgcttcttgacatcagctttgcaaggtgccaacagct 1450
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77090455 ctcagacgctccctaaccggaaatgcttcttgacatcagctttgcaaggtgccaacagct 77090514

                                                                            
Query: 1451     gcaaaacggaggtcattaaaaatgagttctgctcaccatcttcggaggcgaaggcagggg 1510
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77090515 gcaaaacggaggtcattaaaaatgagttctgctcaccatcttcggaggcgaaggcagggg 77090574

                                                                            
Query: 1511     aagggcacaggagaacgatgtctcaaggtgtgccacagtttttcgacacccagcggactt 1570
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77090575 aagggcacaggagaacgatgtctcaaggtgtgccacagtttttcgacacccagcggactt 77090634

                                                                            
Query: 1571     ccacctatgataatgtccctgtccagcctgngtcccctggggacaaagcagatgcactgt 1630
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 77090635 ccacctatgataatgtccctgtccagcctgggtcccctggggacaaagcagatgcactgt 77090694

                                                                            
Query: 1631     ccccccaggcctatgactccaagagagatgctcccggcagcccaaactccgaagccaggg 1690
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 77090695 ccccccaggcctatgactccaagagagatgctcccggcagcccaaactccgaagccaggc 77090754

                                                                            
Query: 1691     ctgggaaaaagaactctggagaagaggaactcgaatcttttcagaggatgttgggtcagg 1750
                |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct: 77090755 ctgggaaaaagaactctggagaagaggaactcgaatcttttcagaggatgtt-ggtccag 77090813

                                                          
Query: 1751     gagctgcgaaaggaaatacaaacacaggaagcaaatgtatga 1792
                |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 77090814 gagctgcgaaaggaaatacaaacaca-gaagcaaatgtatga 77090854



 Score =  607 bits (306), Expect = e-171
 Identities = 330/339 (97%), Gaps = 8/339 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1        tcactgggtcctggggcaccctctctgctgctgatctggacccctgagccc--------t 52
                |||||||||||||||||||||||||||||||||||||||||||||||||||        |
Sbjct: 77045162 tcactgggtcctggggcaccctctctgctgctgatctggacccctgagcccagcctggct 77045221

                                                                            
Query: 53       ggcgcgcagcgctccttggcccttcgctgcctactgctcacgtccccggtcagctcgctt 112
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77045222 ggcgcgcagcgctccttggcccttcgctgcctactgctcacgtccccggtcagctcgctt 77045281

                                                                            
Query: 113      gtctgtccctctccacagctcggtcaaggagcgtgatgaccggtgagcagatggcggcct 172
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 77045282 gtctgtccctctccacagctcggtcaaggagcgtgatgaccggtgagcagatggccgcct 77045341

                                                                            
Query: 173      ttcaccccgcatccagccccaacccgctggaaaggcccatcaagatgggctggctgaaga 232
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77045342 ttcaccccgcatccagccccaacccgctggaaaggcccatcaagatgggctggctgaaga 77045401

                                                                            
Query: 233      agcagaggtccatcgtgaaaaactggcagcagaggtacttcgtgctgagggcgcagcagc 292
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77045402 agcagaggtccatcgtgaaaaactggcagcagaggtacttcgtgctgagggcgcagcagc 77045461

                                                       
Query: 293      tctattactacaaggacgaggaggacgtgaagccacagg 331
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 77045462 tctattactacaaggacgaggaggacgtgaagccacagg 77045500



 Score =  408 bits (206), Expect = e-111
 Identities = 209/210 (99%)
 Strand = Plus / Plus

                                                                            
Query: 534      agcggtgttcggccagcgcttggatgagaccgtggcctatgagcagaaatttggccccca 593
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77075312 agcggtgttcggccagcgcttggatgagaccgtggcctatgagcagaaatttggccccca 77075371

                                                                            
Query: 594      cctggtgcccatcctggtggagaagtgtgccgagttcatcctggagcatggcctgaatga 653
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77075372 cctggtgcccatcctggtggagaagtgtgccgagttcatcctggagcatggcctgaatga 77075431

                                                                            
Query: 654      agagggcatcttccgactgcctgggcaggacaacctggtgaagcagctgagagatgcttt 713
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 77075432 agagggcatcttccgactgcccgggcaggacaacctggtgaagcagctgagagatgcttt 77075491

                                              
Query: 714      tgacgcgggggagcggcccaactttgacag 743
                ||||||||||||||||||||||||||||||
Sbjct: 77075492 tgacgcgggggagcggcccaactttgacag 77075521



 Score =  396 bits (200), Expect = e-107
 Identities = 200/200 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1071     agggactcctcagatccaaagagtgatgaccatgatgatcagagaccatgaagtcctctt 1130
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77086964 agggactcctcagatccaaagagtgatgaccatgatgatcagagaccatgaagtcctctt 77087023

                                                                            
Query: 1131     ccccaagtctaaggatgcacccttatcccctcctgcccccaaaaacgaccccaagaaacc 1190
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77087024 ccccaagtctaaggatgcacccttatcccctcctgcccccaaaaacgaccccaagaaacc 77087083

                                                                            
Query: 1191     tccagtggcacgaagctctgtgggctgggatgcctctgaggaccctccaatttctaggac 1250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77087084 tccagtggcacgaagctctgtgggctgggatgcctctgaggaccctccaatttctaggac 77087143

                                    
Query: 1251     agacagcattaataacatgg 1270
                ||||||||||||||||||||
Sbjct: 77087144 agacagcattaataacatgg 77087163



 Score =  272 bits (137), Expect = 6e-70
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                            
Query: 741      cagagatacagatgtgcacacagtggcctccctgctgaagctctacctccgagacctccc 800
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77080679 cagagatacagatgtgcacacagtggcctccctgctgaagctctacctccgagacctccc 77080738

                                                                            
Query: 801      agaaccagtggttccctggagccagtatgaggggttcctgctgtgtgggcagctcatgaa 860
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77080739 agaaccagtggttccctggagccagtatgaggggttcctgctgtgtgggcagctcatgaa 77080798

                                 
Query: 861      tgcagatgaggcaaagg 877
                |||||||||||||||||
Sbjct: 77080799 tgcagatgaggcaaagg 77080815



 Score =  250 bits (126), Expect = 2e-63
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                            
Query: 948      caggttcctccacgaaatccagctgaactgtggagttaacaagatgagtgtggacaatct 1007
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77085766 caggttcctccacgaaatccagctgaactgtggagttaacaagatgagtgtggacaatct 77085825

                                                                            
Query: 1008     ggctactgtaattggtgtgaatctcatcaggtcaaaagtcgaagaccctgccgtgatcat 1067
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77085826 ggctactgtaattggtgtgaatctcatcaggtcaaaagtcgaagaccctgccgtgatcat 77085885

                      
Query: 1068     gagagg 1073
                ||||||
Sbjct: 77085886 gagagg 77085891



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                            
Query: 415      ccagcctcatgtgaccagagtcgcacgggacaggactcctatgtcctcatggccagctcc 474
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77058482 ccagcctcatgtgaccagagtcgcacgggacaggactcctatgtcctcatggccagctcc 77058541

                                                                            
Query: 475      caggcggaaatggaggagtgggttaaattccttaggagagtcgctggcacgccctgtgga 534
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77058542 caggcggaaatggaggagtgggttaaattccttaggagagtcgctggcacgccctgtgga 77058601

                 
Query: 535      g 535
                |
Sbjct: 77058602 g 77058602



 Score =  180 bits (91), Expect = 2e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                            
Query: 328      cagggttacatgtatctcccaggaagtacaatcaaggagattgccacaaacccagaagaa 387
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77052391 cagggttacatgtatctcccaggaagtacaatcaaggagattgccacaaacccagaagaa 77052450

                                               
Query: 388      gcggggaagtttgtctttgaagtcattccag 418
                |||||||||||||||||||||||||||||||
Sbjct: 77052451 gcggggaagtttgtctttgaagtcattccag 77052481



 Score =  155 bits (78), Expect = 1e-34
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                            
Query: 875      aggctcagcaggagctggtgaagcagctctccatccttcctcgagacaactatagcctcc 934
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77083913 aggctcagcaggagctggtgaagcagctctccatccttcctcgagacaactatagcctcc 77083972

                                  
Query: 935      tgagctacatctgcaggt 952
                ||||||||||||||||||
Sbjct: 77083973 tgagctacatctgcaggt 77083990


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 748      acagatgtgcacacagtggcctccctgctgaagct 782
                |||||||||||||| ||||||||||||||||||||
Sbjct: 96817006 acagatgtgcacacggtggcctccctgctgaagct 96816972



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 748      acagatgtgcacacagtggcctccctgctgaagct 782
                |||||||||||||| ||||||||||||||||||||
Sbjct: 96955103 acagatgtgcacacggtggcctccctgctgaagct 96955069



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 219      gggctggctgaagaagcagaggtccatcgtgaaaaactggcagcag 264
                ||||||||||||||||||||||  |||| |||| ||||||||||||
Sbjct: 97088796 gggctggctgaagaagcagaggagcatcatgaagaactggcagcag 97088751


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,382,699
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 13
Length of query: 1792
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1770
Effective length of database: 2,808,408,574
Effective search space: 4970883175980
Effective search space used: 4970883175980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)