Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008321
(1265 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032714.1| calcium signal-modulating cyclophilin ligand... 537 e-153
>ref|NP_001032714.1| calcium signal-modulating cyclophilin ligand [Bos taurus].
Length = 292
Score = 537 bits (1383), Expect = e-153
Identities = 275/296 (92%), Positives = 282/296 (95%)
Frame = +3
Query: 108 MEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSSAEEE 287
MEPVT DSGDRPGA A SGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGS AEEE
Sbjct: 1 MEPVT---DSGDRPGAPAASGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE 57
Query: 288 SQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDSFMKP 467
SQTK KQQD DKLN+LTIPSVSKRVVLGDSVSTG +D Q+GV EVKGTQLGD LDSF+KP
Sbjct: 58 SQTKSKQQDIDKLNSLTIPSVSKRVVLGDSVSTGPSD-QTGVAEVKGTQLGDKLDSFIKP 116
Query: 468 PECSNDVSLELRQRNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQEDGN 647
ECSND+SLELRQRNRGDLTAD+ QRGSRHGLEQYLSRFEEAMKLRKQLISEKP+QEDGN
Sbjct: 117 SECSNDISLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN 176
Query: 648 TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 827
TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
Sbjct: 177 TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 236
Query: 828 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 995
TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
Sbjct: 237 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,971,903
Number of extensions: 1137428
Number of successful extensions: 3586
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3583
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008321
(1265 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531910.2| PREDICTED: similar to Calcium-signal modulating... 550 e-157
>ref|XP_531910.2| PREDICTED: similar to Calcium-signal modulating cyclophilin ligand
(CAML) [Canis familiaris].
Length = 296
Score = 550 bits (1418), Expect = e-157
Identities = 277/296 (93%), Positives = 284/296 (95%)
Frame = +3
Query: 108 MEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSSAEEE 287
MEP+TVA+DSGDRPGA A SGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGS AEEE
Sbjct: 1 MEPLTVASDSGDRPGAPATSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE 60
Query: 288 SQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDSFMKP 467
SQTK KQQDSDKLN+L+IPSVSKRVVLGDSVS GT D QSGV EVKGTQLGD LDSF+KP
Sbjct: 61 SQTKSKQQDSDKLNSLSIPSVSKRVVLGDSVSIGTTDQQSGVAEVKGTQLGDKLDSFIKP 120
Query: 468 PECSNDVSLELRQRNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQEDGN 647
PECSNDV+LELRQRNRGDLTADT QRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQEDGN
Sbjct: 121 PECSNDVNLELRQRNRGDLTADTVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQEDGN 180
Query: 648 TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 827
TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPK EKKIKT
Sbjct: 181 TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKGEKKIKT 240
Query: 828 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 995
TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHEL +YWGSEVP
Sbjct: 241 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELFNYWGSEVP 296
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,443,708
Number of extensions: 1101502
Number of successful extensions: 3683
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3682
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008321
(1265 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123997.2| PREDICTED: calcium signal-modulating cycloph... 592 e-169
>ref|XP_003123997.2| PREDICTED: calcium signal-modulating cyclophilin ligand-like [Sus
scrofa].
Length = 300
Score = 592 bits (1526), Expect = e-169
Identities = 299/300 (99%), Positives = 299/300 (99%)
Frame = +3
Query: 96 MEGKMEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSS 275
MEGKMEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSS
Sbjct: 1 MEGKMEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSS 60
Query: 276 AEEESQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDS 455
AEEESQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDS
Sbjct: 61 AEEESQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDS 120
Query: 456 FMKPPECSNDVSLELRQRNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQ 635
FMKPPECSNDVSLELR RNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQ
Sbjct: 121 FMKPPECSNDVSLELRHRNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQ 180
Query: 636 EDGNTTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEK 815
EDGNTTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEK
Sbjct: 181 EDGNTTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEK 240
Query: 816 KIKTTVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 995
KIKTTVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
Sbjct: 241 KIKTTVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 300
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,076,186
Number of extensions: 796310
Number of successful extensions: 2193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2192
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008321
(1265 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031622.2| calcium signal-modulating cyclophilin ligand [M... 497 e-141
>ref|NP_031622.2| calcium signal-modulating cyclophilin ligand [Mus musculus].
Length = 294
Score = 497 bits (1279), Expect = e-141
Identities = 253/296 (85%), Positives = 264/296 (89%)
Frame = +3
Query: 108 MEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSSAEEE 287
MEPV ATD G+RP SGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGS +EEE
Sbjct: 1 MEPVPAATDGGERPAT--PSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGSEEE 58
Query: 288 SQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDSFMKP 467
+QTK K QDSDKLN+L+IPSVSKRVVLGDSV G AD GV EV+GTQLGD LDSF+K
Sbjct: 59 NQTKSKPQDSDKLNSLSIPSVSKRVVLGDSVDGGGADQLGGVAEVRGTQLGDKLDSFIKA 118
Query: 468 PECSNDVSLELRQRNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQEDGN 647
PECS+ ELRQR RGDLTAD AQR S HGLEQYLSRFEEAMKLRKQLISEKP+QEDG+
Sbjct: 119 PECSSKDGAELRQRTRGDLTADPAQRASHHGLEQYLSRFEEAMKLRKQLISEKPSQEDGS 178
Query: 648 TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 827
T EEFDSFRIFRLVGCALLA GVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPK EKK+KT
Sbjct: 179 TAEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKGEKKVKT 238
Query: 828 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 995
TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWG EVP
Sbjct: 239 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGPEVP 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,465,577
Number of extensions: 936125
Number of successful extensions: 3088
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3085
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008321
(1265 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001736.1| calcium signal-modulating cyclophilin ligand [H... 543 e-154
>ref|NP_001736.1| calcium signal-modulating cyclophilin ligand [Homo sapiens].
Length = 296
Score = 543 bits (1399), Expect = e-154
Identities = 272/296 (91%), Positives = 282/296 (95%)
Frame = +3
Query: 108 MEPVTVATDSGDRPGALAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSSAEEE 287
ME + VATD G+RPG AGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGS AEEE
Sbjct: 1 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE 60
Query: 288 SQTKLKQQDSDKLNALTIPSVSKRVVLGDSVSTGTADPQSGVTEVKGTQLGDTLDSFMKP 467
SQTK KQQDSDKLN+L++PSVSKRVVLGDSVSTGT D Q GV EVKGTQLGD LDSF+KP
Sbjct: 61 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP 120
Query: 468 PECSNDVSLELRQRNRGDLTADTAQRGSRHGLEQYLSRFEEAMKLRKQLISEKPNQEDGN 647
PECS+DV+LELRQRNRGDLTAD+ QRGSRHGLEQYLSRFEEAMKLRKQLISEKP+QEDGN
Sbjct: 121 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN 180
Query: 648 TTEEFDSFRIFRLVGCALLAFGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 827
TTEEFDSFRIFRLVGCALLA GVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
Sbjct: 181 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT 240
Query: 828 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 995
TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
Sbjct: 241 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP 296
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,777,868
Number of extensions: 1092495
Number of successful extensions: 3711
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3706
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008321
(1265 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 908 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 908 bits (458), Expect = 0.0
Identities = 461/462 (99%)
Strand = Plus / Plus
Query: 279 gaagaagaaagtcaaacaaaattaaagcagcaggacagtgataaactgaacgctctcacc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142575656 gaagaagaaagtcaaacaaaattaaagcagcaggacagtgataaactgaacgctctcacc 142575715
Query: 339 attccttcggtttcaaagcgagtagtgctgggtgattcggtcagtacaggaacagctgac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142575716 attccttcggtttcaaagcgagtagtgctgggtgattcggtcagtacaggaacagctgac 142575775
Query: 399 ccacagagtggtgtcaccgaggtaaaggggactcagctgggagacacattggactctttc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142575776 ccacagagtggtgtcaccgaggtaaaggggactcagctgggagacacattggactctttc 142575835
Query: 459 atgaaacctcctgagtgcagtaatgatgtaagccttgagctccgacagcggaacagaggg 518
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 142575836 atgaaacctcctgagtgcagtaatgatgtaagccttgagctccgacatcggaacagaggg 142575895
Query: 519 gacctgacagcagacactgcccagaggggttcccggcatggcctggaacagtacctctcc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142575896 gacctgacagcagacactgcccagaggggttcccggcatggcctggaacagtacctctcc 142575955
Query: 579 agatttgaagaagcaatgaagctaagaaaacagctgattagtgaaaagcccaatcaagaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142575956 agatttgaagaagcaatgaagctaagaaaacagctgattagtgaaaagcccaatcaagaa 142576015
Query: 639 gatggaaatacaacagaagaatttgactcttttcgaatatttagattggtgggatgtgct 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142576016 gatggaaatacaacagaagaatttgactcttttcgaatatttagattggtgggatgtgct 142576075
Query: 699 cttcttgcctttggagtcagagcttttgtttgcaaatatttg 740
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142576076 cttcttgcctttggagtcagagcttttgtttgcaaatatttg 142576117
Score = 726 bits (366), Expect = 0.0
Identities = 432/462 (93%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 805 agagtgaaaagaagataaagacaacagtactaacagcggcacttctattatccggaattc 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142583415 agagtgaaaagaagataaagacaacagtactaacagcggcacttctattatccggaattc 142583474
Query: 865 ctgccgaagtgataaatcgatcaatggatacctatagcaaaatgggcgaagttttcacag 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142583475 ctgccgaagtgataaatcgatcaatggatacctatagcaaaatgggcgaagttttcacag 142583534
Query: 925 atctgtgtgtctacnnnnnnnnnnnnnnnnnnngtcatgaactgcttgattattggggct 984
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 142583535 atctgtgtgtctactttttcacttttattttttgtcatgaactgcttgattattggggct 142583594
Query: 985 ctgaagtaccatgaaggcttcagaactcagaaggagaagcacatgaataaacaatttttc 1044
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142583595 ctgaagtaccatgaagccttcagaactcagaaggagaagcacatgaataaacaatttttc 142583654
Query: 1045 ttctatattgcagtgcctctaaaggaggcatattggttacaccattatgtaattctttta 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142583655 ttctatattgcagtgcctctaaaggaggcatattggttacaccattatgtaattctttta 142583714
Query: 1105 cttttggggattgtaaaaccacttgattaagaatgggatggtanggtccctgattgaaaa 1164
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 142583715 cttttggggattgtaaaaccacttgattaagaatgggatggtagggtccctgattgaaaa 142583774
Query: 1165 gagtggagtttgtattantaccgatgtgaagattagagtaccagtgtcagtaattgannn 1224
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 142583775 gagtggagtttgtattaataccgatgtgaagattagagtaccagtgtcagtaattgattt 142583834
Query: 1225 nnnncttgtttaa-tagaattcctggtgtttgcttttcccta 1265
||||||||| ||||||||||||||||||||||||||||
Sbjct: 142583835 ttttcttgtttaattagaattcctggtgtttgcttttcccta 142583876
Score = 369 bits (186), Expect = 3e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 94 ttatggaggggaagatggagccggtcaccgtcgctaccgacagcggggaccggccggggg 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142573801 ttatggaggggaagatggagccggtcaccgtcgctaccgacagcggggaccggccggggg 142573860
Query: 154 ccctggcgggctcaggcctgtccgcttcccagcgtcgggccgagctgcggcggagaaagc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142573861 ccctggcgggctcaggcctgtccgcttcccagcgtcgggccgagctgcggcggagaaagc 142573920
Query: 214 tgctcatgaactcagaacagcgcatcaatcggatcatgggttttcacaggccggggagca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142573921 tgctcatgaactcagaacagcgcatcaatcggatcatgggttttcacaggccggggagca 142573980
Query: 274 gcgcgg 279
||||||
Sbjct: 142573981 gcgcgg 142573986
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 740 gtccatatttgctccatttcttactttacaacttgcatacatgggactatacaaatattt 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142578736 gtccatatttgctccatttcttactttacaacttgcatacatgggactatacaaatattt 142578795
Query: 800 tcccaag 806
|||||||
Sbjct: 142578796 tcccaag 142578802
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,630,221
Number of extensions: 297
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 5
Length of query: 1265
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1244
Effective length of database: 2,808,413,156
Effective search space: 3493665966064
Effective search space used: 3493665966064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)