Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008323
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015529.1| 3'-5' exoribonuclease CSL4 homolog [Bos taur... 388 e-108
>ref|NP_001015529.1| 3'-5' exoribonuclease CSL4 homolog [Bos taurus].
Length = 195
Score = 388 bits (996), Expect = e-108
Identities = 192/195 (98%), Positives = 195/195 (100%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTK+SENGALPVISVMRET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKTSENGALPVISVMRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
Sbjct: 61 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 120
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 121 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 180
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 181 EFRKVARVQPEFLQT 195
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,852,945
Number of extensions: 1063795
Number of successful extensions: 2808
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2808
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008323
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534981.1| PREDICTED: similar to exosome component 1 isofo... 387 e-108
Alignment gi|XP_860077.1| PREDICTED: similar to exosome component 1 isofo... 344 7e-95
Alignment gi|XP_860147.1| PREDICTED: similar to exosome component 1 isofo... 329 3e-90
Alignment gi|XP_860107.1| PREDICTED: similar to 3-5 exoribonuclease CSL4 ... 289 3e-78
>ref|XP_534981.1| PREDICTED: similar to exosome component 1 isoform 1 [Canis
familiaris].
Length = 195
Score = 387 bits (995), Expect = e-108
Identities = 192/195 (98%), Positives = 194/195 (99%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVG IVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
Sbjct: 61 SQLLPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 120
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 121 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 180
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 181 EFRKVARVQPEFLQT 195
>ref|XP_860077.1| PREDICTED: similar to exosome component 1 isoform 3 [Canis
familiaris].
Length = 178
Score = 344 bits (883), Expect = 7e-95
Identities = 175/195 (89%), Positives = 177/195 (90%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVG IVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDK
Sbjct: 61 SQLLPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDK----- 115
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
ISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 116 ------------ISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 163
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 164 EFRKVARVQPEFLQT 178
>ref|XP_860147.1| PREDICTED: similar to exosome component 1 isoform 5 [Canis
familiaris].
Length = 170
Score = 329 bits (843), Expect = 3e-90
Identities = 169/195 (86%), Positives = 170/195 (87%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGA
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGA----------- 49
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
VSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
Sbjct: 50 --------------VSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 95
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 96 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 155
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 156 EFRKVARVQPEFLQT 170
>ref|XP_860107.1| PREDICTED: similar to 3-5 exoribonuclease CSL4 homolog (Exosome
component 1) isoform 4 [Canis familiaris].
Length = 154
Score = 289 bits (739), Expect = 3e-78
Identities = 151/195 (77%), Positives = 153/195 (78%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVG IVTCKV EIYK
Sbjct: 61 SQLLPDVGTIVTCKV-----------------------------------------EIYK 79
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 80 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 139
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 140 EFRKVARVQPEFLQT 154
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,564,806
Number of extensions: 1091346
Number of successful extensions: 2635
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2633
Number of HSP's successfully gapped: 5
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008323
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928838.1| PREDICTED: exosome complex component CSL4 [S... 393 e-110
>ref|XP_001928838.1| PREDICTED: exosome complex component CSL4 [Sus scrofa].
Length = 195
Score = 393 bits (1010), Expect = e-110
Identities = 195/195 (100%), Positives = 195/195 (100%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
Sbjct: 61 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 120
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 121 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 180
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 181 EFRKVARVQPEFLQT 195
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,609,459
Number of extensions: 681246
Number of successful extensions: 1801
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1800
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008323
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079920.1| exosome complex component CSL4 isoform 1 [Mus m... 382 e-106
Alignment gi|NP_001158033.1| exosome complex component CSL4 isoform 2 [Mu... 285 4e-77
>ref|NP_079920.1| exosome complex component CSL4 isoform 1 [Mus musculus].
Length = 195
Score = 382 bits (981), Expect = e-106
Identities = 186/195 (95%), Positives = 194/195 (99%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCL K+SENGA+PV+SVMRET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKTSENGAVPVVSVMRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVGA+VTCKVSSINSRFAKVHILYVGSTPLKN+FRGTIRKED+RATEKDKVEIYK
Sbjct: 61 SQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYK 120
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 121 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 180
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 181 EFRKVARVQPEFLQT 195
>ref|NP_001158033.1| exosome complex component CSL4 isoform 2 [Mus musculus].
Length = 154
Score = 285 bits (729), Expect = 4e-77
Identities = 147/195 (75%), Positives = 153/195 (78%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCL K+SENGA+PV+SVMRET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKTSENGAVPVVSVMRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVGA+VTC KVEIYK
Sbjct: 61 SQLLPDVGAVVTC-----------------------------------------KVEIYK 79
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
Sbjct: 80 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 139
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 140 EFRKVARVQPEFLQT 154
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,919,501
Number of extensions: 921274
Number of successful extensions: 2316
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2316
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008323
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057130.1| exosome complex component CSL4 [Homo sapiens]. 382 e-106
>ref|NP_057130.1| exosome complex component CSL4 [Homo sapiens].
Length = 195
Score = 382 bits (981), Expect = e-106
Identities = 188/195 (96%), Positives = 193/195 (98%)
Frame = +3
Query: 36 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPVISVMRETD 215
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCL KSSENGALPV+SV+RET+
Sbjct: 1 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE 60
Query: 216 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK 395
SQLLPDVGAIVTCKVSSINSRFAKVHILYVGS PLKNSFRGTIRKEDVRATEKDKVEIYK
Sbjct: 61 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK 120
Query: 396 SFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK 575
SFRPGDIVLAKVISLGDAQS+YLLTTAENELGVVVAHSESG+QMVPISWCEMQCPKTHTK
Sbjct: 121 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK 180
Query: 576 EFRKVARVQPEFLQT 620
EFRKVARVQPEFLQT
Sbjct: 181 EFRKVARVQPEFLQT 195
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,944,768
Number of extensions: 1084206
Number of successful extensions: 2688
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008323
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 908 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 908 bits (458), Expect = 0.0
Identities = 496/510 (97%), Gaps = 1/510 (0%)
Strand = Plus / Minus
Query: 514 caggtgtccagatggttcccatcagctggtgtgagatgcagtgcccaaagacccacacta 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118340569 caggtgtccagatggttcccatcagctggtgtgagatgcagtgcccaaagacccacacta 118340510
Query: 574 aagaattccggaaagtggcacgagtacaacccgaattcttgcagacctaagaagccacac 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118340509 aagaattccggaaagtggcacgagtacaacccgaattcttgcagacctaagaagccacac 118340450
Query: 634 tttaccccaaagagggggtaagctgtttccaagactacatgtatgaacgtgacagcagga 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118340449 tttaccccaaagagggggtaagctgtttccaagactacatgtatgaacgtgacagcagga 118340390
Query: 694 tgctgtggtctttattcaggcacctgggtttggccagcagccacctctagataaatctgc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118340389 tgctgtggtctttattcaggcacctgggtttggccagcagccacctctagataaatctgc 118340330
Query: 754 cagaaacttactctgtagccggaacatttttcttgtgaacctttaagcagacttcattct 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118340329 cagaaacttactctgtagccggaacatttttcttgtgaacctttaagcagacttcattct 118340270
Query: 814 ctcaagtgttacatttctcttctggaggcaccagcaaacaaactgtgtgatgttgaaaat 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118340269 ctcaagtgttacatttctcttctggaggcaccagcaaacaaactgtgtgatgttgaaaat 118340210
Query: 874 agcctattctttctgacagtcttataaatatgtattttttgctgtgacnnnnnnnncatt 933
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118340209 agcctattctttctgacagtcttataaatatgtattttttgctgtgacaaagaaaacatt 118340150
Query: 934 tttacgtaaagaattttatggttcctgttgtcttgagtagggaaaggattct-aaccgtg 992
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct: 118340149 tttacgtaaaggattttatggtttctgttgtcttgagtagggaaaggattctaaacagtg 118340090
Query: 993 tcatgacctgtaaagcagggtcttgcctgg 1022
||||||| |||| |||||||||||||||||
Sbjct: 118340089 tcatgacatgtagagcagggtcttgcctgg 118340060
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 66 ggcgaacgtctgtgtaatttggaggaggggagccccggcagcggcacctacacccggcac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118346549 ggcgaacgtctgtgtaatttggaggaggggagccccggcagcggcacctacacccggcac 118346490
Query: 126 ggctacatcttttcgtcgcttgctggctgcctgacgaagagcagcgagaacggcgcg 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118346489 ggctacatcttttcgtcgcttgctggctgcctgacgaagagcagcgagaacggcgcg 118346433
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 256 aggtctctagcatcaattcacgctttgccaaagtacacattctgtatgtggggtccacac 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118343476 aggtctctagcatcaattcacgctttgccaaagtacacattctgtatgtggggtccacac 118343417
Query: 316 cacttaagaactcttttcgaggaactatccggaaagaag 354
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 118343416 cacttaagaactcttttcgaggaactatccggtaagaag 118343378
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 432 atctctctaggtgacgcgcagtcccactacctcctgacgactgccgaaaacgagctggga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118341246 atctctctaggtgacgcgcagtcccactacctcctgacgactgccgaaaacgagctggga 118341187
Query: 492 gtggtggtagcccacagtgaatcaggtg 519
||||||||||||||||||||||||||||
Sbjct: 118341186 gtggtggtagcccacagtgaatcaggtg 118341159
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 182 gcttcctgtcatatctgtgatgagagaaacggattcccaattattgccagatgtgggagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118345421 gcttcctgtcatatctgtgatgagagaaacggattcccaattattgccagatgtgggagc 118345362
Query: 242 tattgtgacctgtaaggt 259
||||||||||||||||||
Sbjct: 118345361 tattgtgacctgtaaggt 118345344
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 5 attttccttcggacttcggacagaggcagtcatggcaccacctgtgaggtattgcatccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118346733 attttccttcggacttcggacagaggcagtcatggcaccacctgtgaggtattgcatccc 118346674
Query: 65 cgg 67
|||
Sbjct: 118346673 cgg 118346671
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 379 aggttgaaatttataagagtttccgcccaggggacatcgtattggccaaagtc 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118341432 aggttgaaatttataagagtttccgcccaggggacatcgtattggccaaagtc 118341380
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 346 ggaaagaagatgtccgagctactgaaaaagacaaggttg 384
|||||||||||||||||||||||||||||||||||||||
Sbjct: 118342245 ggaaagaagatgtccgagctactgaaaaagacaaggttg 118342207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,207,157
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 9
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)