Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008326
(951 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014961.1| hypothetical protein LOC540118 [Bos taurus]. 387 e-108
Alignment gi|NP_001070486.1| hypothetical protein LOC767946 [Bos taurus]. 85 1e-16
Alignment gi|XP_002683986.1| PREDICTED: hypothetical protein [Bos taurus]. 56 4e-08
Alignment gi|NP_001092673.1| glycine/arginine-rich protein 1 [Bos taurus]. 56 5e-08
Alignment gi|XP_873775.3| PREDICTED: hypothetical protein [Bos taurus]. 54 2e-07
>ref|NP_001014961.1| hypothetical protein LOC540118 [Bos taurus].
Length = 295
Score = 387 bits (994), Expect = e-108
Identities = 206/264 (78%), Positives = 206/264 (78%), Gaps = 1/264 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPVDTLTPGARDTPA LP RLRTKVPGYLLRRPAD GARKPSAVERLEADKAKYVKSLHV
Sbjct: 1 MPVDTLTPGARDTPA-LPIRLRTKVPGYLLRRPADGGARKPSAVERLEADKAKYVKSLHV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRR LPGPG RPQ CDSPVS
Sbjct: 60 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRALPGPGCRPQLDLDILSSLINLCDSPVS 119
Query: 523 PAEASRTPGRVEGACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPG-TAASSPA 699
PAEASRTPGR EGA Q DVLPLPASP QPCPSPG AASSP
Sbjct: 120 PAEASRTPGRAEGARQPPLATPPRPPPSIAAVRRVDVLPLPASPIQPCPSPGPAAASSPV 179
Query: 700 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXXX 879
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSA 239
Query: 880 XXXXXXXXCSRRSSATVEERARER 951
CSRRSS TVEERARER
Sbjct: 240 GPASSEGGCSRRSSVTVEERARER 263
>ref|NP_001070486.1| hypothetical protein LOC767946 [Bos taurus].
Length = 380
Score = 84.7 bits (208), Expect = 1e-16
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 8/82 (9%)
Frame = +1
Query: 637 PLPASPAQPCP----SPGTAASSPA----RPPGLQRSKSDLSERFSRAAADLERFFNFCG 792
PLP P P SP A+ PA R P LQRSKSDLS+R+ R AD+ERFFN+CG
Sbjct: 233 PLPPKPKVAAPAAVKSPEAEAAEPAGGVGRRPSLQRSKSDLSDRYFRVDADVERFFNYCG 292
Query: 793 LDPEEARGLGVAHLARASSDIV 858
LDPEE LG+ + ARA+SDI+
Sbjct: 293 LDPEELENLGMENFARANSDII 314
Score = 74.3 bits (181), Expect = 1e-13
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Frame = +1
Query: 163 MPVDTLTPGARDTP--------AALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKA 318
MP ++L G+ P +A+P R+ K P Y RR A+ ++ SAVERLEADKA
Sbjct: 1 MPTESLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYF-RRQAEPNPKRLSAVERLEADKA 59
Query: 319 KYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPG 456
KYVKS V N +QEPV+P + +P P +R + +P+ + G G
Sbjct: 60 KYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKGFGGGG 105
>ref|XP_002683986.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 554
Score = 56.2 bits (134), Expect = 4e-08
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 28/216 (12%)
Frame = +1
Query: 259 PADSGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPS-- 432
P +G + SAVERL AD+AKYV+ P PG +P
Sbjct: 275 PDAAGPARRSAVERLAADRAKYVRG-----------------PPRTGPGPAGGGSSPEAT 317
Query: 433 --RRVLPGPG------RRPQXXXXXXXXXXXXCDSPVSPAEASRT---------PGRVE- 558
+ +PGPG R+P + S A++ R P + +
Sbjct: 318 GGQACVPGPGVRRAIARKPLRPDSLVIYRQKCEFARASGADSPRASLVKKLFQGPSKDKT 377
Query: 559 ----GACQXXXXXXXXXXXXXXXXXXXDVLPLPA----SPAQPCPSPGTAASSPARPPGL 714
GA + P PA +P + +P A AR GL
Sbjct: 378 PEPPGAARVGAEWGVRAQGAARAEPGPSTAPAPARSVGTPPRVPAAPRGAELLGARRRGL 437
Query: 715 QRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLG 822
QRS+SDLS R+S + A+ + FF +CGL+P+ LG
Sbjct: 438 QRSQSDLSSRYSASLAESDTFFQYCGLEPDVVEALG 473
>ref|NP_001092673.1| glycine/arginine-rich protein 1 [Bos taurus].
Length = 270
Score = 55.8 bits (133), Expect = 5e-08
Identities = 66/212 (31%), Positives = 85/212 (40%), Gaps = 12/212 (5%)
Frame = +1
Query: 247 LLRRPAD-SGARKPSAVERLEADKAKYVKSLHVANTRQE--------PVQPLLCKQ--PL 393
LL P+ S R PSAVERLEADKAKYVK+ V RQE P+ P C + P
Sbjct: 2 LLASPSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGGPGPLTPHTCNELGPP 61
Query: 394 FSPGTRRTVLTPSRRVLPGPGRR-PQXXXXXXXXXXXXCDSPVSPAEASRTPGRVEGACQ 570
SP T R P+RR G GRR P+ C + V+ E ++ G V
Sbjct: 62 PSPRTPR----PARR---GSGRRLPRPDSLIFYRQKRDCKASVN-KENAKGQGLVR---- 109
Query: 571 XXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFS 750
DV A ++ +PG + P K L S
Sbjct: 110 -----------RLFLGSPRDVASSSAGSSERPAAPGGWTAPQDAPEA--AGKRALCPTCS 156
Query: 751 RAAADLERFFNFCGLDPEEARGLGVAHLARAS 846
++ ERFFN+CGL+ LG + S
Sbjct: 157 LPLSEKERFFNYCGLERALVEVLGAERFSPQS 188
>ref|XP_873775.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 258
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Frame = +1
Query: 637 PLPASPAQPCPSPGTAASSPARPPG----------LQRSKSDLSERFSRAAADLERFFNF 786
P P++ P S GT PA P G LQRS+SDLS R+S + A+ + FF +
Sbjct: 106 PGPSTAPAPARSVGTPPRVPAAPRGAELLGARRRGLQRSQSDLSSRYSASLAESDTFFQY 165
Query: 787 CGLDPEEARGLG 822
CGL+P+ LG
Sbjct: 166 CGLEPDVVEALG 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,749,039
Number of extensions: 1495932
Number of successful extensions: 12526
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12261
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008326
(951 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852018.1| PREDICTED: similar to Protein C20orf55 homolog ... 388 e-108
Alignment gi|XP_851898.1| PREDICTED: hypothetical protein XP_846805 [Cani... 81 2e-15
Alignment gi|XP_848273.1| PREDICTED: hypothetical protein XP_843180 [Cani... 50 2e-06
>ref|XP_852018.1| PREDICTED: similar to Protein C20orf55 homolog [Canis familiaris].
Length = 295
Score = 388 bits (996), Expect = e-108
Identities = 207/264 (78%), Positives = 208/264 (78%), Gaps = 1/264 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPVDTLTPGARDTPA LPFRLRTKVPGYLLRRPAD GARKPSAVERLEADKAKYVKSLHV
Sbjct: 1 MPVDTLTPGARDTPA-LPFRLRTKVPGYLLRRPADGGARKPSAVERLEADKAKYVKSLHV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQPLL KQPLFSPGTRRTVLTPSRRVLPGPGRRPQ CDSP S
Sbjct: 60 ANTRQEPVQPLLSKQPLFSPGTRRTVLTPSRRVLPGPGRRPQLDLDILSNLIDLCDSPAS 119
Query: 523 PAEASRTPGRVEGACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPGTA-ASSPA 699
P EASRTP R EGA Q DV PLPASPA+PCPSPGTA ASSPA
Sbjct: 120 PTEASRTPARTEGAHQAPPATPPRPPPSTAAVRRVDVRPLPASPARPCPSPGTATASSPA 179
Query: 700 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXXX 879
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSA 239
Query: 880 XXXXXXXXCSRRSSATVEERARER 951
CSRRSSATVEERARER
Sbjct: 240 GPGSSEGDCSRRSSATVEERARER 263
>ref|XP_851898.1| PREDICTED: hypothetical protein XP_846805 [Canis familiaris].
Length = 375
Score = 80.9 bits (198), Expect = 2e-15
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +1
Query: 637 PLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARG 816
P A PA+P A +R P LQRSKSDLS+R+ R AD+ERFFN+CGLDPEE
Sbjct: 243 PEAAEPAEP-------ACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELEN 295
Query: 817 LGVAHLARASSDIV 858
LG+ + ARA+SDI+
Sbjct: 296 LGMENFARANSDII 309
Score = 79.7 bits (195), Expect = 4e-15
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Frame = +1
Query: 163 MPVDTLTPGARDTP--------AALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKA 318
MP +TL G+ P +A+P R+ K P Y RR A+ ++ SAVERLEADKA
Sbjct: 1 MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYF-RRQAEPNPKRLSAVERLEADKA 59
Query: 319 KYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPG 450
KYVKS V N +QEPV+P + +P P +R + +P+ RVL G
Sbjct: 60 KYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLRVLGG 103
>ref|XP_848273.1| PREDICTED: hypothetical protein XP_843180 [Canis familiaris].
Length = 334
Score = 50.4 bits (119), Expect = 2e-06
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1
Query: 697 ARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDI 855
+R GL+RS+SD+S R+S + A+ + FF FCGLDPE LG + + S +
Sbjct: 212 SRRGGLRRSQSDMSSRYSASLAEFDTFFQFCGLDPEVLDALGRENFSAGSDRV 264
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,322,707
Number of extensions: 1524963
Number of successful extensions: 12084
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11846
Number of HSP's successfully gapped: 4
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008326
(951 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134401.1| PREDICTED: protein FAM110A-like isoform 1 [S... 419 e-118
Alignment gi|XP_001925841.1| PREDICTED: protein FAM110B-like [Sus scrofa]. 82 4e-16
Alignment gi|NP_001230408.1| glycine/arginine-rich protein 1 [Sus scrofa]. 51 1e-06
>ref|XP_003134401.1| PREDICTED: protein FAM110A-like isoform 1 [Sus scrofa].
Length = 295
Score = 419 bits (1078), Expect = e-118
Identities = 217/263 (82%), Positives = 217/263 (82%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV
Sbjct: 1 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 60
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQ CDSPVS
Sbjct: 61 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQLDLDILSNLINLCDSPVS 120
Query: 523 PAEASRTPGRVEGACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPGTAASSPAR 702
PAEASRTPGRVEGACQ DVLPLPASPAQPCPSPGTAASSPAR
Sbjct: 121 PAEASRTPGRVEGACQPPPATPPRPPPSTAAVRRVDVLPLPASPAQPCPSPGTAASSPAR 180
Query: 703 PPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXXXX 882
PPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 181 PPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAG 240
Query: 883 XXXXXXXCSRRSSATVEERARER 951
CSRRSSATVEERARER
Sbjct: 241 PASSEGGCSRRSSATVEERARER 263
>ref|XP_001925841.1| PREDICTED: protein FAM110B-like [Sus scrofa].
Length = 371
Score = 82.0 bits (201), Expect = 4e-16
Identities = 46/84 (54%), Positives = 55/84 (65%), Gaps = 10/84 (11%)
Frame = +1
Query: 637 PLPASP----AQPCP--SPGTAASSPA----RPPGLQRSKSDLSERFSRAAADLERFFNF 786
PLP P A P SP A+ PA R P LQRSKSDLS+R+ R AD+ERFFN+
Sbjct: 222 PLPPKPKAAAAAPAALKSPEAEAAEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNY 281
Query: 787 CGLDPEEARGLGVAHLARASSDIV 858
CGLDPEE LG+ + ARA+SDI+
Sbjct: 282 CGLDPEELENLGMENFARANSDII 305
Score = 78.6 bits (192), Expect = 5e-15
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Frame = +1
Query: 163 MPVDTLTPGARDTP--------AALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKA 318
MP ++L G+ P +A+P R+ K P Y RR A+ ++ SAVERLEADKA
Sbjct: 1 MPTESLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYF-RRQAEPNPKRLSAVERLEADKA 59
Query: 319 KYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQ 468
KYVKS V N +QEPV+P + +P P +R + +P+ +VL G G +P+
Sbjct: 60 KYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKVL-GGGAKPE 108
>ref|NP_001230408.1| glycine/arginine-rich protein 1 [Sus scrofa].
Length = 270
Score = 50.8 bits (120), Expect = 1e-06
Identities = 61/200 (30%), Positives = 79/200 (39%), Gaps = 10/200 (5%)
Frame = +1
Query: 277 RKPSAVERLEADKAKYVKSLHVANTRQE--------PVQPLLCKQPLFSPGTRRTVLTPS 432
R PSAVERLEADKAKYVK+ V RQE P+ P C + L P + RT +
Sbjct: 13 RTPSAVERLEADKAKYVKTHQVIARRQEPALRGAPGPLTPHPCNE-LGPPPSPRTPRSAR 71
Query: 433 RRVLPGPGRR-PQXXXXXXXXXXXXCDSPVSPAEASRTPGRVEGACQXXXXXXXXXXXXX 609
R G GRR P+ C + V+ E ++ G V
Sbjct: 72 R----GSGRRLPRPDSLIFYRQKRDCKASVN-KENAKGQGLVR---------------RL 111
Query: 610 XXXXXXDVL-PLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFFNF 786
DV P S +P G A A +R+ L S ++ ERFFN+
Sbjct: 112 FLGSPRDVASSSPGSTERPAAPGGWVAPQEAPETAGKRA---LCPTCSLPLSEKERFFNY 168
Query: 787 CGLDPEEARGLGVAHLARAS 846
CGL+ LG + S
Sbjct: 169 CGLERALVEVLGAERFSPQS 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,723,594
Number of extensions: 975055
Number of successful extensions: 8099
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7837
Number of HSP's successfully gapped: 4
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008326
(951 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666239.1| hypothetical protein LOC73847 [Mus musculus]. 340 7e-94
Alignment gi|NP_082942.2| hypothetical protein LOC73847 [Mus musculus]. 340 7e-94
Alignment gi|NP_775602.1| hypothetical protein LOC242297 [Mus musculus]. 80 3e-15
Alignment gi|NP_001092766.1| glycine/arginine-rich protein 1 [Mus musculu... 57 3e-08
Alignment gi|NP_082104.2| family with sequence similarity 110, member C [... 55 1e-07
>ref|NP_666239.1| hypothetical protein LOC73847 [Mus musculus].
Length = 296
Score = 340 bits (873), Expect = 7e-94
Identities = 189/265 (71%), Positives = 196/265 (73%), Gaps = 2/265 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPVDTL+PGA TPA LPFRLRTKVPGYLL RPAD GARKPSAVERLEADKAKYVKSL V
Sbjct: 1 MPVDTLSPGAPATPA-LPFRLRTKVPGYLLPRPADGGARKPSAVERLEADKAKYVKSLRV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQP L +QPLFSPG R VLTPSRRVLP GRRPQ CDSPVS
Sbjct: 60 ANTRQEPVQPPLVRQPLFSPGPRGPVLTPSRRVLPCSGRRPQLDLDILSSLINLCDSPVS 119
Query: 523 PAEASRTPGRVEG-ACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPG-TAASSP 696
P+EASRTPGR EG A + DV PLPASPA+P PSPG T SSP
Sbjct: 120 PSEASRTPGRPEGSAHKVPPATPPRPPPSTVAVRRVDVRPLPASPARPYPSPGTTTTSSP 179
Query: 697 ARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXX 876
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 GRPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPS 239
Query: 877 XXXXXXXXXCSRRSSATVEERARER 951
CSRRSSATVEER+ +R
Sbjct: 240 AGPCSSEGGCSRRSSATVEERSLDR 264
>ref|NP_082942.2| hypothetical protein LOC73847 [Mus musculus].
Length = 296
Score = 340 bits (873), Expect = 7e-94
Identities = 189/265 (71%), Positives = 196/265 (73%), Gaps = 2/265 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPVDTL+PGA TPA LPFRLRTKVPGYLL RPAD GARKPSAVERLEADKAKYVKSL V
Sbjct: 1 MPVDTLSPGAPATPA-LPFRLRTKVPGYLLPRPADGGARKPSAVERLEADKAKYVKSLRV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQP L +QPLFSPG R VLTPSRRVLP GRRPQ CDSPVS
Sbjct: 60 ANTRQEPVQPPLVRQPLFSPGPRGPVLTPSRRVLPCSGRRPQLDLDILSSLINLCDSPVS 119
Query: 523 PAEASRTPGRVEG-ACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPG-TAASSP 696
P+EASRTPGR EG A + DV PLPASPA+P PSPG T SSP
Sbjct: 120 PSEASRTPGRPEGSAHKVPPATPPRPPPSTVAVRRVDVRPLPASPARPYPSPGTTTTSSP 179
Query: 697 ARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXX 876
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 GRPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPS 239
Query: 877 XXXXXXXXXCSRRSSATVEERARER 951
CSRRSSATVEER+ +R
Sbjct: 240 AGPCSSEGGCSRRSSATVEERSLDR 264
>ref|NP_775602.1| hypothetical protein LOC242297 [Mus musculus].
Length = 366
Score = 79.7 bits (195), Expect = 3e-15
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
Frame = +1
Query: 163 MPVDTLTPGARDTP--------AALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKA 318
MP +TL G+ P +A+P R+ K P Y RR A+ ++ SAVERLEADKA
Sbjct: 1 MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYF-RRQAEPNPKRLSAVERLEADKA 59
Query: 319 KYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRV 441
KYVKS V N +QEPV+P + +P PGT+R + +P+ +V
Sbjct: 60 KYVKSQEVINAKQEPVKPAVLAKPPVCPGTKRALGSPTLKV 100
Score = 79.7 bits (195), Expect = 3e-15
Identities = 43/79 (54%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Frame = +1
Query: 637 PLPASP-AQPCPSPGTAASSPA----RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDP 801
PLP P SP PA R P LQRSKSDLS+R+ R AD+ERFFN+CGLDP
Sbjct: 222 PLPPKPKVAAMKSPEADQVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDP 281
Query: 802 EEARGLGVAHLARASSDIV 858
EE LG+ + ARA+SDI+
Sbjct: 282 EELENLGMENFARANSDII 300
>ref|NP_001092766.1| glycine/arginine-rich protein 1 [Mus musculus].
Length = 271
Score = 56.6 bits (135), Expect = 3e-08
Identities = 62/202 (30%), Positives = 82/202 (40%), Gaps = 9/202 (4%)
Frame = +1
Query: 268 SGARKPSAVERLEADKAKYVKSLHVANTRQEP--------VQPLLCKQPLFSPGTRRTVL 423
S R PSAVERLEADKAKYVK+ V RQEP + P C + L + + RT
Sbjct: 10 SRGRTPSAVERLEADKAKYVKTHQVIVRRQEPALRGGPGPLTPHPCNE-LGASASPRTP- 67
Query: 424 TPSRRVLPGPGRR-PQXXXXXXXXXXXXCDSPVSPAEASRTPGRVEGACQXXXXXXXXXX 600
P+RR G GRR P+ C + V+ E ++ G V
Sbjct: 68 GPARR---GSGRRQPRPDSLIFYRQKRDCKASVNK-ENAKGQGLVR-------------- 109
Query: 601 XXXXXXXXXDVLPLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFF 780
D P +P + +P A SP P K + S ++ ERFF
Sbjct: 110 -RLFLGATRDAAPSSPAPTERPGAPAGWAGSPDTPEAT--GKRAVCPTCSLPLSEKERFF 166
Query: 781 NFCGLDPEEARGLGVAHLARAS 846
N+CGL+ LG + S
Sbjct: 167 NYCGLERALVEVLGAERFSPQS 188
>ref|NP_082104.2| family with sequence similarity 110, member C [Mus musculus].
Length = 421
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/75 (42%), Positives = 42/75 (56%)
Frame = +1
Query: 634 LPLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEAR 813
LP +P P G +R GLQRS+SDLS R+S A A+ + FF +CGLDP+
Sbjct: 281 LPFEVAPRVPVGCSGVQLRV-SRSKGLQRSQSDLSSRYSIAKAESDTFFKYCGLDPDVVE 339
Query: 814 GLGVAHLARASSDIV 858
LG + + A SD V
Sbjct: 340 ALGRENFS-AGSDCV 353
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,142,561
Number of extensions: 1195003
Number of successful extensions: 8995
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8762
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008326
(951 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997004.1| hypothetical protein LOC83541 [Homo sapiens]. 362 e-100
Alignment gi|NP_001035812.1| hypothetical protein LOC83541 [Homo sapiens]. 362 e-100
Alignment gi|NP_113612.1| hypothetical protein LOC83541 [Homo sapiens]. 362 e-100
Alignment gi|NP_671722.1| hypothetical protein LOC90362 [Homo sapiens]. 81 2e-15
Alignment gi|NP_001071178.2| FAM110C protein [Homo sapiens]. 67 3e-11
Alignment gi|NP_079145.2| glycine/arginine-rich protein 1 [Homo sapiens]. 60 3e-09
>ref|NP_997004.1| hypothetical protein LOC83541 [Homo sapiens].
Length = 295
Score = 362 bits (929), Expect = e-100
Identities = 196/264 (74%), Positives = 200/264 (75%), Gaps = 1/264 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPV TL+PGA PA LP RLRT+VPGYLLR PAD GARKPSAVERLEADKAKYVKSLHV
Sbjct: 1 MPVHTLSPGAPSAPA-LPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQPLL KQPLFSP TRRTVLTPSRR LPGP RRPQ CDSPVS
Sbjct: 60 ANTRQEPVQPLLSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVS 119
Query: 523 PAEASRTPGRVEGACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPG-TAASSPA 699
PAEASRTPGR EGA + DV PLPASPA+PCPSPG AASSPA
Sbjct: 120 PAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPA 179
Query: 700 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXXX 879
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSA 239
Query: 880 XXXXXXXXCSRRSSATVEERARER 951
CSRRSS TVEERARER
Sbjct: 240 GPGSSEGGCSRRSSVTVEERARER 263
>ref|NP_001035812.1| hypothetical protein LOC83541 [Homo sapiens].
Length = 295
Score = 362 bits (929), Expect = e-100
Identities = 196/264 (74%), Positives = 200/264 (75%), Gaps = 1/264 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPV TL+PGA PA LP RLRT+VPGYLLR PAD GARKPSAVERLEADKAKYVKSLHV
Sbjct: 1 MPVHTLSPGAPSAPA-LPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQPLL KQPLFSP TRRTVLTPSRR LPGP RRPQ CDSPVS
Sbjct: 60 ANTRQEPVQPLLSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVS 119
Query: 523 PAEASRTPGRVEGACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPG-TAASSPA 699
PAEASRTPGR EGA + DV PLPASPA+PCPSPG AASSPA
Sbjct: 120 PAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPA 179
Query: 700 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXXX 879
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSA 239
Query: 880 XXXXXXXXCSRRSSATVEERARER 951
CSRRSS TVEERARER
Sbjct: 240 GPGSSEGGCSRRSSVTVEERARER 263
>ref|NP_113612.1| hypothetical protein LOC83541 [Homo sapiens].
Length = 295
Score = 362 bits (929), Expect = e-100
Identities = 196/264 (74%), Positives = 200/264 (75%), Gaps = 1/264 (0%)
Frame = +1
Query: 163 MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHV 342
MPV TL+PGA PA LP RLRT+VPGYLLR PAD GARKPSAVERLEADKAKYVKSLHV
Sbjct: 1 MPVHTLSPGAPSAPA-LPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHV 59
Query: 343 ANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQXXXXXXXXXXXXCDSPVS 522
ANTRQEPVQPLL KQPLFSP TRRTVLTPSRR LPGP RRPQ CDSPVS
Sbjct: 60 ANTRQEPVQPLLSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVS 119
Query: 523 PAEASRTPGRVEGACQXXXXXXXXXXXXXXXXXXXDVLPLPASPAQPCPSPG-TAASSPA 699
PAEASRTPGR EGA + DV PLPASPA+PCPSPG AASSPA
Sbjct: 120 PAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPA 179
Query: 700 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVXXXXXXX 879
RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV
Sbjct: 180 RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSA 239
Query: 880 XXXXXXXXCSRRSSATVEERARER 951
CSRRSS TVEERARER
Sbjct: 240 GPGSSEGGCSRRSSVTVEERARER 263
>ref|NP_671722.1| hypothetical protein LOC90362 [Homo sapiens].
Length = 370
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/71 (56%), Positives = 49/71 (69%)
Frame = +1
Query: 646 ASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGV 825
AS P P A +R P LQRSKSDLS+R+ R AD+ERFFN+CGLDPEE LG+
Sbjct: 234 ASMKSPEADPVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGM 293
Query: 826 AHLARASSDIV 858
+ ARA+SDI+
Sbjct: 294 ENFARANSDII 304
Score = 75.5 bits (184), Expect = 7e-14
Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Frame = +1
Query: 163 MPVDTLTPGARDTP--------AALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKA 318
MP +TL G+ P +A+P R+ K P Y RR A+ ++ SAVERLEADKA
Sbjct: 1 MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYF-RRQAEPNPKRLSAVERLEADKA 59
Query: 319 KYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRV 441
KYVKS V N +QEPV+P + +P P +R + +P+ +V
Sbjct: 60 KYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKV 100
>ref|NP_001071178.2| FAM110C protein [Homo sapiens].
Length = 321
Score = 66.6 bits (161), Expect = 3e-11
Identities = 69/224 (30%), Positives = 87/224 (38%), Gaps = 22/224 (9%)
Frame = +1
Query: 253 RRPADSGARKPSAVERLEADKAKYVKSLHVAN--TRQEPVQPLLCKQPLFSPGTRRTVLT 426
R P + + SAVERL AD+AKYV+ E P K P PG
Sbjct: 24 RDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPPARAPA 83
Query: 427 P-SRRVLPGPGRRPQXXXXXXXXXXXXCDSPVSPAEASRTPGRVEGACQXXXXXXXXXXX 603
P +RR + RP S AS +G +
Sbjct: 84 PVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDE 143
Query: 604 XXXXXXXXDVLPL-------PASPAQPCPSPGTAASS--PARPPG----------LQRSK 726
+ +P PA P P P+ +AA S PA PPG LQRS+
Sbjct: 144 GKAGNP--ETVPTTPGPAADPAIPETPAPAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQ 201
Query: 727 SDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIV 858
SDLS R+S A A+ + FF +CGLDPE LG + A SD V
Sbjct: 202 SDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGSDCV 244
>ref|NP_079145.2| glycine/arginine-rich protein 1 [Homo sapiens].
Length = 271
Score = 60.1 bits (144), Expect = 3e-09
Identities = 68/205 (33%), Positives = 84/205 (40%), Gaps = 12/205 (5%)
Frame = +1
Query: 268 SGARKPSAVERLEADKAKYVKSLHVANTRQE--------PVQPLLCKQ--PLFSPGTRRT 417
S R PSAVERLEADKAKYVK+ V RQE P+ P C + P SP T R
Sbjct: 10 SRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPASPRTPR- 68
Query: 418 VLTPSRRVLPGPGRR-PQXXXXXXXXXXXXCDSPVSPAEASRTPGRVEGACQXXXXXXXX 594
P RR G GRR P+ C + V+ E ++ G V
Sbjct: 69 ---PVRR---GSGRRLPRPDSLIFYRQKRDCKASVN-KENAKGQGLVR------------ 109
Query: 595 XXXXXXXXXXXDVLP-LPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLE 771
D P PAS +P S G AA A +R+ L S ++ E
Sbjct: 110 ---RLFLGAPRDAAPSSPASTERPAASGGWAAPQDAPEAAGKRA---LCPTCSLPLSEKE 163
Query: 772 RFFNFCGLDPEEARGLGVAHLARAS 846
RFFN+CGL+ LG + S
Sbjct: 164 RFFNYCGLERALVEVLGAERFSPQS 188
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,216,950
Number of extensions: 1471738
Number of successful extensions: 11284
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 11044
Number of HSP's successfully gapped: 7
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008326
(951 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1883 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1883 bits (950), Expect = 0.0
Identities = 950/950 (100%)
Strand = Plus / Plus
Query: 2 agtctttgccgagccttttgtctgagtgtgcactgccccttttttctttctttcctctct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39060911 agtctttgccgagccttttgtctgagtgtgcactgccccttttttctttctttcctctct 39060970
Query: 62 gcagccgttgcggagtccagctgccagccttctgcctggatctctgtttcctcattttgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39060971 gcagccgttgcggagtccagctgccagccttctgcctggatctctgtttcctcattttgc 39061030
Query: 122 tagtctcctgagacagaagccttcgggggtatgttacagccatgcccgtggacacgctga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061031 tagtctcctgagacagaagccttcgggggtatgttacagccatgcccgtggacacgctga 39061090
Query: 182 ctccgggagcccgggatacccctgccgccctgcctttccgcctccggaccaaggtccccg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061091 ctccgggagcccgggatacccctgccgccctgcctttccgcctccggaccaaggtccccg 39061150
Query: 242 gctacctgctacggcgtccagcagacagtggagcccggaaacctagcgctgtagaacgcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061151 gctacctgctacggcgtccagcagacagtggagcccggaaacctagcgctgtagaacgcc 39061210
Query: 302 tggaggctgacaaggccaagtacgtcaagagcctgcatgtagccaacacccgccaggaac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061211 tggaggctgacaaggccaagtacgtcaagagcctgcatgtagccaacacccgccaggaac 39061270
Query: 362 ctgtgcagcccctgctgtgcaaacagccactcttcagccctgggactcgccgcactgtgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061271 ctgtgcagcccctgctgtgcaaacagccactcttcagccctgggactcgccgcactgtgc 39061330
Query: 422 tcacgcctagccgccgagtgctgcctggcccaggccgccggccccagctggacctggaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061331 tcacgcctagccgccgagtgctgcctggcccaggccgccggccccagctggacctggaca 39061390
Query: 482 tccttagcaacctcatcaacttgtgtgatagtccagtgtcccctgccgaggccagccgta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061391 tccttagcaacctcatcaacttgtgtgatagtccagtgtcccctgccgaggccagccgta 39061450
Query: 542 cccctggacgggtcgagggggcctgccagcctccaccagccacgcccccacgcccaccac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061451 cccctggacgggtcgagggggcctgccagcctccaccagccacgcccccacgcccaccac 39061510
Query: 602 ccagtactgctgcagtccgccgcgtggatgtccttccgctgccagcctcaccagcccagc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061511 ccagtactgctgcagtccgccgcgtggatgtccttccgctgccagcctcaccagcccagc 39061570
Query: 662 cctgcccatcgccaggcactgctgcctccagcccggcccggccccccggtttgcaacgtt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061571 cctgcccatcgccaggcactgctgcctccagcccggcccggccccccggtttgcaacgtt 39061630
Query: 722 ccaaatcggacctgagtgagcgcttctcgcgggcagcagctgacctggagcgatttttta 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061631 ccaaatcggacctgagtgagcgcttctcgcgggcagcagctgacctggagcgatttttta 39061690
Query: 782 acttctgtggcctggacccagaggaggcccgcgggttgggtgtggcccatctggcacggg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061691 acttctgtggcctggacccagaggaggcccgcgggttgggtgtggcccatctggcacggg 39061750
Query: 842 ccagctcagacattgtgtccctggcggggcccagtgctgggccggccagctctgaggggg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061751 ccagctcagacattgtgtccctggcggggcccagtgctgggccggccagctctgaggggg 39061810
Query: 902 gctgctcccgccggagctctgccaccgtcgaggagcgggcccgggagcgc 951
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39061811 gctgctcccgccggagctctgccaccgtcgaggagcgggcccgggagcgc 39061860
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,452,920
Number of extensions: 708
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 1
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)