Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008329
(959 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus]. 546 e-155
Alignment gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li... 105 8e-23
Alignment gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part... 105 8e-23
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 104 1e-22
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 102 7e-22
Alignment gi|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos ... 101 1e-21
Alignment gi|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300... 96 6e-20
Alignment gi|XP_603152.3| PREDICTED: PCAF associated factor 65 beta [Bos ... 96 6e-20
Alignment gi|NP_001014887.1| notchless protein homolog 1 [Bos taurus]. 94 1e-19
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 93 3e-19
>ref|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].
Length = 305
Score = 546 bits (1407), Expect = e-155
Identities = 267/282 (94%), Positives = 268/282 (95%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQYSILFKQEQAHDDAIWSVAWG+NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL
Sbjct: 1 MTNQYSILFKQEQAHDDAIWSVAWGSNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 60
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 120
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240
Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
CPDDTHF GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282
Score = 84.7 bits (208), Expect = 1e-16
Identities = 49/196 (25%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I IYD
Sbjct: 287 SKIVSVGDDQEIHIYD 302
>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
Length = 589
Score = 105 bits (261), Expect = 8e-23
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Frame = +2
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
+GH V +DIS AS+S D RLW + ++ D + F P+S Y
Sbjct: 381 QGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATG+ V ++ + G +LS+A+SP+GKYLAS D + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----------LAGTLS 799
L L GH I SLTFSPDS L+ +AS D ++++D++ ++ L G +
Sbjct: 501 TLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYT 560
Query: 800 GHASWVLNVAF 832
G S VL+V F
Sbjct: 561 GQMSNVLSVQF 571
Score = 78.2 bits (191), Expect = 1e-14
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
S S D IR WDL + W L SP S Y A+ +H ++ + +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFD---R 415
Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
Y L + + + P+ YLA+G+ D + ++ G + GH P+ SL
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLA 475
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
FSP+ + L +A +D +K++D+ L L GH + ++ F PD +
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSS 523
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
NS + TGS D V++W + ++ GH+ V+S+ S AS+ D ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSTQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
WDL +G K + + +L FSPDS +A+ + V ++ + S
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRS 541
>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
Length = 265
Score = 105 bits (261), Expect = 8e-23
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Frame = +2
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
+GH V +DIS AS+S D RLW + ++ D + F P+S Y
Sbjct: 57 QGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 116
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATG+ V ++ + G +LS+A+SP+GKYLAS D + ++D+A+G
Sbjct: 117 LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 176
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----------LAGTLS 799
L L GH I SLTFSPDS L+ +AS D ++++D++ ++ L G +
Sbjct: 177 TLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYT 236
Query: 800 GHASWVLNVAF 832
G S VL+V F
Sbjct: 237 GQMSNVLSVQF 247
Score = 78.2 bits (191), Expect = 1e-14
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
S S D IR WDL + W L SP S Y A+ +H ++ + +
Sbjct: 35 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFD---R 91
Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
Y L + + + P+ YLA+G+ D + ++ G + GH P+ SL
Sbjct: 92 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLA 151
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
FSP+ + L +A +D +K++D+ L L GH + ++ F PD +
Sbjct: 152 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSS 199
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
NS + TGS D V++W + ++ GH+ V+S+ S AS+ D ++L
Sbjct: 113 NSNYLATGSTDKTVRLWSTQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 170
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
WDL +G K + + +L FSPDS +A+ + V ++ + S
Sbjct: 171 WDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRS 217
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 104 bits (259), Expect = 1e-22
Identities = 72/290 (24%), Positives = 137/290 (47%), Gaps = 2/290 (0%)
Frame = +2
Query: 95 SSLGKEMTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EK 271
+ LG+ +++ LFK +AH + +VA ++ +TGS D K+W E+
Sbjct: 72 NKLGQHSNHKF-YLFKVLRAHILPLTNVALN----KSGSCFITGSYDRTCKLWDTASGEE 126
Query: 272 LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 448
L +LEGH+ V ++ ++ A+ S D +LW +E GK + + L
Sbjct: 127 LH---TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCL 183
Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
+F+P S +ATG+ ++ ++SG++ ++L I+S++++ G + +G+ D +
Sbjct: 184 SFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTV 243
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
+++ TG+ ++TL GH I S F+ D L++T S D K++D + TL+GH
Sbjct: 244 TVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHD 303
Query: 809 SWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
+L+ F TR CV H+ ++ + +
Sbjct: 304 DEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISF 353
Score = 99.8 bits (247), Expect = 3e-21
Identities = 58/270 (21%), Positives = 117/270 (43%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H + ++++A+ + + TGS D K+W K + GH +V +
Sbjct: 131 EGHRNVVYAIAFNN---PYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSF 185
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
+ + A+ S+D +LWD+++G+++ ++ + +L+F+ + TG+ V +
Sbjct: 186 NPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTV 245
Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
+ ++G+K Y+L I S ++ D + +G++D ++D GK + TL GH
Sbjct: 246 WEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE 305
Query: 689 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXX 868
I F +L+ TAS DG +I+ L GH + ++F P
Sbjct: 306 ILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSS 365
Query: 869 XXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
T C+ H D+++ +
Sbjct: 366 DKTARIWDAQTGQCLQVLEGHTDEIFSCAF 395
Score = 79.0 bits (193), Expect = 6e-15
Identities = 53/203 (26%), Positives = 92/203 (45%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H I S+++ T+ ++TGS D V VW+ + ++L GH + S +
Sbjct: 218 HSAEIISLSFNTS----GNRIITGSFDHTVTVWEADTGRK--VYTLIGHCAEISSAVFNW 271
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ + S+D +LWD NGK + ++ + F + +AT + G IF
Sbjct: 272 DCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFS 331
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 694
+ + L+ I I+++P G L +G+ D I+D TG+ L LEGH I
Sbjct: 332 AATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIF 391
Query: 695 SLTFSPDSQLLVTASDDGYIKIY 763
S F+ +++T S D +I+
Sbjct: 392 SCAFNYKGDIIITGSKDNTCRIW 414
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 102 bits (253), Expect = 7e-22
Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H A+ SV + N E + + S D L+K+W D K + ++ GH+LG+ V S
Sbjct: 44 HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S+S D +++WD+ +GK +K++ + F+P S + +G+ V I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
V++GK +L + ++ ++ DG + S + DG+ I+D A+G+ L TL + P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ FSP+ + ++ A+ D +K++D T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 95.5 bits (236), Expect = 6e-20
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V SGK +L ++ ++P + SG+ D + I+
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG +I+D TL +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Frame = +2
Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
N S +V+GS D+ V++W + K +L H V +V + + SSS D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
R+WD +G+ +K++ D PV + FSP+ +Y+ T + ++ GK K
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
Y+ K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 713 DSQLLVTAS--DDGYIKIY 763
++ +A+ +D IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330
>ref|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos taurus].
Length = 663
Score = 101 bits (251), Expect = 1e-21
Identities = 60/230 (26%), Positives = 110/230 (47%)
Frame = +2
Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
AH + S+ G K + + TG D V +W K + SL GH V SV ++
Sbjct: 18 AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72
Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
+ + S IR+WDLE K ++++ + +L F P +++A+G+ + ++
Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132
Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
+ + + + + +SPDGK+LAS A D + ++D+ GK++ GH P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ F P+ LL + S D I+ +D++ + + G V ++ F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPD 242
Score = 79.0 bits (193), Expect = 6e-15
Identities = 53/209 (25%), Positives = 94/209 (44%)
Frame = +2
Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
E +V GS ++VW K+ +L GH+ + S+D AS S D +I+LWD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
+ + L FSPD ++LA+ V ++ + +GK +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193
Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
+ + P+ LASG+ D I +D+ +++ +EG P+RS+ F+PD L + D
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCCLYSGCQDS 253
Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFC 835
+++Y + + H V ++A C
Sbjct: 254 -LRVYGWEPERCFDVVLVHWGKVADLAIC 281
Score = 77.0 bits (188), Expect = 2e-14
Identities = 42/167 (25%), Positives = 80/167 (47%)
Frame = +2
Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
+ A+ D + LW + I S+ ++ + + + G+ G + ++ +E+
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
K +L I S+ + P G+++ASG+ D I ++DI + GH+ +R L
Sbjct: 95 AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
FSPD + L +A+DD +K++D+ + GH V V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201
>ref|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300/CBP-associated factor
(PCAF)-associated factor, 65kDa [Bos taurus].
Length = 600
Score = 95.5 bits (236), Expect = 6e-20
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Frame = +2
Query: 182 WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
+ T +S +++ S D ++ W E +GH V +DIS AS+S
Sbjct: 357 YSTRFLPDSSALLSCSEDTSIRYWDL--ESFTNTVLYQGHAYPVWDLDISPHSLFFASAS 414
Query: 362 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
D RLW + ++ + F P+S YLATG+ V ++ + G
Sbjct: 415 YDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRL 474
Query: 542 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
+ +A+SP+G+YL S D ++ ++D+A+G L L GH I S+TFS DS
Sbjct: 475 FTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534
Query: 722 LLVTASDDGYIKIYDVQ-----------HANLAGTLSGHASWVLNVAF 832
++ +AS D ++I+D++ + L G +G S VLNV F
Sbjct: 535 VIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTVLNVQF 582
Score = 80.1 bits (196), Expect = 3e-15
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESG 526
S S D IR WDLE+ W L SP S + A+ + H ++ F
Sbjct: 370 SCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASASYDHTARLWSFDRTYP 429
Query: 527 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 706
+ Y+ G + + + P+ YLA+G+ D + ++ G + GH P+R L F
Sbjct: 430 LRIYAGHLAG--VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAF 487
Query: 707 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
SP+ Q LV+A +D +K++D+ L L GH + +V F D +
Sbjct: 488 SPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534
>ref|XP_603152.3| PREDICTED: PCAF associated factor 65 beta [Bos taurus].
Length = 600
Score = 95.5 bits (236), Expect = 6e-20
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Frame = +2
Query: 182 WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
+ T +S +++ S D ++ W E +GH V +DIS AS+S
Sbjct: 357 YSTRFLPDSSALLSCSEDTSIRYWDL--ESFTNTVLYQGHAYPVWDLDISPHSLFFASAS 414
Query: 362 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
D RLW + ++ + F P+S YLATG+ V ++ + G
Sbjct: 415 YDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRL 474
Query: 542 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
+ +A+SP+G+YL S D ++ ++D+A+G L L GH I S+TFS DS
Sbjct: 475 FTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534
Query: 722 LLVTASDDGYIKIYDVQ-----------HANLAGTLSGHASWVLNVAF 832
++ +AS D ++I+D++ + L G +G S VLNV F
Sbjct: 535 VIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTVLNVQF 582
Score = 80.1 bits (196), Expect = 3e-15
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESG 526
S S D IR WDLE+ W L SP S + A+ + H ++ F
Sbjct: 370 SCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASASYDHTARLWSFDRTYP 429
Query: 527 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 706
+ Y+ G + + + P+ YLA+G+ D + ++ G + GH P+R L F
Sbjct: 430 LRIYAGHLAG--VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAF 487
Query: 707 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
SP+ Q LV+A +D +K++D+ L L GH + +V F D +
Sbjct: 488 SPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSS 534
>ref|NP_001014887.1| notchless protein homolog 1 [Bos taurus].
Length = 486
Score = 94.4 bits (233), Expect = 1e-19
Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Frame = +2
Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
SLEGH V+SV S T AS S D +R WDL + ++++SPD
Sbjct: 110 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 169
Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
+ LA+G G++ ++ +GK+ +L K+I ++++ +P+ +Y+AS + DG +
Sbjct: 170 KKLASGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSV 229
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D G+ TL GHA + L + D LL +AS D IK++ L TL GH
Sbjct: 230 RVWDTTAGRCERTLTGHAQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 288
Query: 809 SWVLNVAFCPD 841
WV +A D
Sbjct: 289 HWVNTMALSTD 299
Score = 89.0 bits (219), Expect = 6e-18
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 1/230 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H ++ + WG + + S D +KVW+ D L GH + +++ +
Sbjct: 246 HAQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 300
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
L A +A + DL Q + + + L + L +G+ + ++
Sbjct: 301 ALRTGAFEPAEASVNAQDLRGSLQ--ELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS 358
Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
KK + T + +++ + +SPD + +AS + D I ++D TGK L +L GH +
Sbjct: 359 PAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAV 418
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ +S DS+LLV+ S D +K++DV+ L+ L GHA V V + PD
Sbjct: 419 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPD 468
Score = 69.3 bits (168), Expect = 5e-12
Identities = 42/146 (28%), Positives = 75/146 (51%)
Frame = +2
Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
+ E +V+GS D + +W ++K L + GHQ + V S + AS+S D I+
Sbjct: 340 QGPERLVSGSDDFTLFLWSPAEDKKPLA-RMTGHQALINQVVFSPDSRVIASASFDKSIK 398
Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
LWD GK + S+ + +A+S DS+ L +G+ + ++ V++ K L
Sbjct: 399 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHAD 458
Query: 560 FILSIAYSPDGKYLASGAIDGIINIF 637
+ ++ +SPDG+ +ASG D + I+
Sbjct: 459 EVYAVDWSPDGQRVASGGKDKCLRIW 484
Score = 65.9 bits (159), Expect = 5e-11
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 7/199 (3%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H +A+ SVA+ K + +GS D V+ W E ++ +GH+ V+S+
Sbjct: 112 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCQGHRHWVLSISW 165
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
S AS + I LWD GKQ+ G W A S P+ +Y+A+ +
Sbjct: 166 SPDGKKLASGCKNGQILLWDPSTGKQVGRALTGH-SKWITALSWEPLHANPECRYVASSS 224
Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
G V ++ +G+ E +L + + + + DG L S + D I ++ G L T
Sbjct: 225 KDGSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 283
Query: 668 LEGHAMPIRSLTFSPDSQL 724
L+GH + ++ S D L
Sbjct: 284 LQGHGHWVNTMALSTDYAL 302
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 93.2 bits (230), Expect = 3e-19
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 3/208 (1%)
Frame = +2
Query: 227 SLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 406
S D +++W D K LQ L+GHQ V +V SH AS D + LW++++G+
Sbjct: 82 SCDRTIRLWDATDAKC-LQ-VLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 407 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIA 577
++ + F+P S LATG+ + ++ + +G L+ I +
Sbjct: 140 LRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLC 199
Query: 578 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 757
YSP G LASG+ D I+I+ +T LL L+GH ++S+ FSPD Q L +A +K
Sbjct: 200 YSPSG-LLASGSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVK 258
Query: 758 IYDVQHANLAGTLSGHASWVLNVAFCPD 841
++D TL G + AF PD
Sbjct: 259 VWDCNTGKCTETLKGVLNVAHACAFMPD 286
Score = 91.7 bits (226), Expect = 9e-19
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ + ++T S D V W+ + +L W L GH+ V S + AS+S D IRL
Sbjct: 32 DGQRLLTASEDGCVYGWETQSGRL--LWRLRGHKGPVRFCRFSPDGRLFASTSCDRTIRL 89
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD + K ++ + T++FS DS+ LA+G +V ++ V+SG+
Sbjct: 90 WDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDS 149
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGK--LLH-TLEGHAMPIRSLTFSPDSQLLVT 733
+ S ++P LA+G+ D I ++D+ G + H LEGH I L +SP S LL +
Sbjct: 150 VQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSP-SGLLAS 208
Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
S D I I+ +L L GH +WV ++AF PD
Sbjct: 209 GSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPD 244
Score = 71.6 bits (174), Expect = 9e-13
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 3/202 (1%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H ++ +V++ + K+ + +G D V +W+ + ++ + GH+ V S D
Sbjct: 102 KGHQRSVETVSFSHDSKQ----LASGGWDKRVMLWEVQSGQVLRHFV--GHRDSVQSSDF 155
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQ---IKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
+ + A+ S D+ IR+WDL G + ++ + L +SP S LA+G+
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSP-SGLLASGSWDKT 214
Query: 500 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 679
++I+ + L ++ SIA+SPDG+ LAS ++ ++D TGK TL+G
Sbjct: 215 IHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKCTETLKGV 274
Query: 680 AMPIRSLTFSPDSQLLVTASDD 745
+ F PD +LLV+ + D
Sbjct: 275 LNVAHACAFMPDGKLLVSGAVD 296
Score = 68.6 bits (166), Expect = 8e-12
Identities = 44/151 (29%), Positives = 66/151 (43%)
Frame = +2
Query: 491 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 670
VG+V FG G+ + S A+SPDG+ L + + DG + ++ +G+LL L
Sbjct: 11 VGRVKFFGRHRGE-----------VNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRL 59
Query: 671 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 850
GH P+R FSPD +L + S D I+++D A L GH V V+F D
Sbjct: 60 RGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQ 119
Query: 851 FXXXXXXXXXXXXXXGTRTCVHTFFDHQDQV 943
+ + F H+D V
Sbjct: 120 LASGGWDKRVMLWEVQSGQVLRHFVGHRDSV 150
Score = 67.8 bits (164), Expect = 1e-11
Identities = 40/130 (30%), Positives = 64/130 (49%)
Frame = +2
Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
AFSPD Q L T + G V + +SG+ + L + +SPDG+ AS + D I
Sbjct: 28 AFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFASTSCDRTI 87
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D K L L+GH + +++FS DS+ L + D + +++VQ + GH
Sbjct: 88 RLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHR 147
Query: 809 SWVLNVAFCP 838
V + F P
Sbjct: 148 DSVQSSDFAP 157
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,138,470
Number of extensions: 1199038
Number of successful extensions: 5807
Number of sequences better than 1.0e-05: 148
Number of HSP's gapped: 5166
Number of HSP's successfully gapped: 357
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008329
(959 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isofo... 542 e-154
Alignment gi|XP_853762.1| PREDICTED: similar to WD repeat domain 61 [Cani... 380 e-105
Alignment gi|XP_861437.1| PREDICTED: similar to WD repeat domain 61 isofo... 233 2e-61
Alignment gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ... 105 8e-23
Alignment gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi... 101 9e-22
Alignment gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi... 101 9e-22
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 100 2e-21
Alignment gi|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-r... 91 2e-18
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 89 5e-18
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 89 6e-18
>ref|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isoform 1 [Canis
familiaris].
Length = 305
Score = 542 bits (1397), Expect = e-154
Identities = 265/282 (93%), Positives = 267/282 (94%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW DE+LDLQWSL
Sbjct: 1 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWCDERLDLQWSL 60
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL+NGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLDNGKQIKSIDAGPVDAWTLAFSPDSQY 120
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240
Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
CPDDTHF GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/196 (24%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I +YD
Sbjct: 287 SKIVSVGDDQEIHVYD 302
>ref|XP_853762.1| PREDICTED: similar to WD repeat domain 61 [Canis familiaris].
Length = 221
Score = 380 bits (975), Expect = e-105
Identities = 197/247 (79%), Positives = 201/247 (81%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQYSILFKQEQA DDAIW LDLQWSL
Sbjct: 1 MTNQYSILFKQEQAQDDAIW---------------------------------LDLQWSL 27
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
E HQL VVSV+ISHTLPIAASSSLDAHIRLWDL+N KQIKSIDAGPVDAWTL FSPD QY
Sbjct: 28 ERHQLAVVSVNISHTLPIAASSSLDAHIRLWDLDNSKQIKSIDAGPVDAWTLVFSPDPQY 87
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTHVGKVNIFGVESGKK+YSLDTRGKFILSI YSPDG YL SGAIDG INIFDIATG
Sbjct: 88 LATGTHVGKVNIFGVESGKKKYSLDTRGKFILSITYSPDGMYLTSGAIDGAINIFDIATG 147
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEG A+PIRSLTFS SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 148 KLLHTLEGLAIPIRSLTFSLASQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 207
Query: 833 CPDDTHF 853
CPDDTHF
Sbjct: 208 CPDDTHF 214
Score = 50.1 bits (118), Expect = 3e-06
Identities = 28/129 (21%), Positives = 57/129 (44%)
Frame = +2
Query: 533 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
++SL+ ++S+ S AS ++D I ++D+ K + +++ + +L FSP
Sbjct: 24 QWSLERHQLAVVSVNISHTLPIAASSSLDAHIRLWDLDNSKQIKSIDAGPVDAWTLVFSP 83
Query: 713 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXX 892
D Q L T + G + I+ V+ +L ++L++ + PD +
Sbjct: 84 DPQYLATGTHVGKVNIFGVESGKKKYSLDTRGKFILSITYSPDGMYLTSGAIDGAINIFD 143
Query: 893 XGTRTCVHT 919
T +HT
Sbjct: 144 IATGKLLHT 152
>ref|XP_861437.1| PREDICTED: similar to WD repeat domain 61 isoform a isoform 2
[Canis familiaris].
Length = 154
Score = 233 bits (594), Expect = 2e-61
Identities = 113/128 (88%), Positives = 113/128 (88%)
Frame = +2
Query: 575 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 754
A SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI
Sbjct: 4 AQSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 63
Query: 755 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQ 934
KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF GTRTCVHTFFDHQ
Sbjct: 64 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 123
Query: 935 DQVWGVKY 958
DQVWGVKY
Sbjct: 124 DQVWGVKY 131
Score = 79.3 bits (194), Expect = 5e-15
Identities = 37/139 (26%), Positives = 73/139 (52%)
Frame = +2
Query: 350 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 529
AS ++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 13 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 72
Query: 530 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 709
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++
Sbjct: 73 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 132
Query: 710 PDSQLLVTASDDGYIKIYD 766
+ +V+ DD I +YD
Sbjct: 133 GNGSKIVSVGDDQEIHVYD 151
>ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II
p300/CBP-associated factor-associated factor 65 kDa
subunit 5L (PCAF associated factor 65 beta) (PAF65-beta)
[Canis familiaris].
Length = 589
Score = 105 bits (261), Expect = 8e-23
Identities = 65/191 (34%), Positives = 96/191 (50%), Gaps = 11/191 (5%)
Frame = +2
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
+GH V +DIS AS S D RLW + ++ D + F P+S Y
Sbjct: 381 QGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATG+ V ++ + G +LS+A+SP+GKYLAS D + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-----------ANLAGTLS 799
L L GH I SLTFSPDS L+ +AS D ++++D+++ L G +
Sbjct: 501 TLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTYCSTPADGSSGELVGVYT 560
Query: 800 GHASWVLNVAF 832
G S VL+V F
Sbjct: 561 GQMSNVLSVQF 571
Score = 79.7 bits (195), Expect = 4e-15
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
S S D IR WDL + W L SP S Y A+G+H ++ + +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFD---R 415
Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
Y L + + + P+ YLA+G+ D + ++ G + GH P+ SL
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLA 475
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
FSP+ + L +A +D +K++D+ L L GH + ++ F PD +
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSS 523
Score = 49.7 bits (117), Expect = 4e-06
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
NS + TGS D V++W + ++ GH+ V+S+ S AS+ D ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
WDL +G K + + +L FSPDS +A+ + V ++ + +
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRN 541
>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1
(Katanin p80 subunit B1) (p80 katanin) isoform 2 [Canis
familiaris].
Length = 655
Score = 101 bits (252), Expect = 9e-22
Identities = 61/230 (26%), Positives = 110/230 (47%)
Frame = +2
Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
AH + S+ G K + + TG D V +W K + SL GH V SV ++
Sbjct: 18 AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72
Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
+ + S IR+WDLE K ++++ + +L F P +++A+G+ + ++
Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132
Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
+ + + + + +SPDGK+LAS A D + ++D+ GK++ GH P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ F P+ LL + S D I+ +D++ + + G V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 77.0 bits (188), Expect = 2e-14
Identities = 42/167 (25%), Positives = 80/167 (47%)
Frame = +2
Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
+ A+ D + LW + I S+ ++ + + + G+ G + ++ +E+
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
K +L I S+ + P G+++ASG+ D I ++DI + GH+ +R L
Sbjct: 95 AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
FSPD + L +A+DD +K++D+ + GH V V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201
Score = 76.3 bits (186), Expect = 4e-14
Identities = 53/211 (25%), Positives = 94/211 (44%)
Frame = +2
Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
E +V GS ++VW K+ +L GH+ + S+D AS S D +I+LWD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
+ + L FSPD ++LA+ V ++ + +GK +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193
Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
+ + P+ LASG+ D I +D+ +++ +EG P+RS+ F+PD L + D
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+++Y + + V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVSWGKVADLAVCND 283
>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1
(Katanin p80 subunit B1) (p80 katanin) isoform 1 [Canis
familiaris].
Length = 655
Score = 101 bits (252), Expect = 9e-22
Identities = 61/230 (26%), Positives = 110/230 (47%)
Frame = +2
Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
AH + S+ G K + + TG D V +W K + SL GH V SV ++
Sbjct: 18 AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72
Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
+ + S IR+WDLE K ++++ + +L F P +++A+G+ + ++
Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132
Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
+ + + + + +SPDGK+LAS A D + ++D+ GK++ GH P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ F P+ LL + S D I+ +D++ + + G V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 77.0 bits (188), Expect = 2e-14
Identities = 42/167 (25%), Positives = 80/167 (47%)
Frame = +2
Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
+ A+ D + LW + I S+ ++ + + + G+ G + ++ +E+
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
K +L I S+ + P G+++ASG+ D I ++DI + GH+ +R L
Sbjct: 95 AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
FSPD + L +A+DD +K++D+ + GH V V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201
Score = 76.3 bits (186), Expect = 4e-14
Identities = 53/211 (25%), Positives = 94/211 (44%)
Frame = +2
Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
E +V GS ++VW K+ +L GH+ + S+D AS S D +I+LWD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
+ + L FSPD ++LA+ V ++ + +GK +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193
Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
+ + P+ LASG+ D I +D+ +++ +EG P+RS+ F+PD L + D
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+++Y + + V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVSWGKVADLAVCND 283
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 100 bits (249), Expect = 2e-21
Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 2/286 (0%)
Frame = +2
Query: 107 KEMTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EKLDLQ 283
++ +N LFK +AH + +VA ++ +TGS D K+W E+L
Sbjct: 75 RQHSNHTFYLFKVLRAHILPLTNVALN----KSGSCFITGSYDRTCKLWDTASGEELH-- 128
Query: 284 WSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 460
+LEGH+ V ++ ++ A+ S D +LW +E GK + + L+F+P
Sbjct: 129 -TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNP 187
Query: 461 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 640
S +ATG+ ++ ++SG++ ++L I+S++++ G + +G+ D + +++
Sbjct: 188 QSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWE 247
Query: 641 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 820
TG+ ++TL GH I S F+ D L++T S D ++D + TL+GH +L
Sbjct: 248 ADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEIL 307
Query: 821 NVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
+ F TR C+ H+ ++ + +
Sbjct: 308 DSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISF 353
Score = 97.4 bits (241), Expect = 2e-20
Identities = 57/270 (21%), Positives = 118/270 (43%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H + ++++A+ + + TGS D K+W K + GH +V +
Sbjct: 131 EGHRNVVYAIAFNN---PYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSF 185
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
+ + A+ S+D +LWD+++G+++ ++ + +L+F+ + TG+ V +
Sbjct: 186 NPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAV 245
Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
+ ++G+K Y+L I S ++ D + +G++D ++D + GK + TL GH
Sbjct: 246 WEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDE 305
Query: 689 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXX 868
I F +L+ TAS DG +++ L GH + ++F P
Sbjct: 306 ILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSA 365
Query: 869 XXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
T C+ H D+++ +
Sbjct: 366 DETARIWDAQTGQCLQVLEGHTDEIFSCAF 395
Score = 80.9 bits (198), Expect = 2e-15
Identities = 54/205 (26%), Positives = 93/205 (45%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H I S+++ T+ + +VTGS D V VW+ + ++L GH + S
Sbjct: 216 RGHSAEIISLSFNTS----GDRIVTGSFDHTVAVWEADTGRK--VYTLIGHCAEISSALF 269
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
+ + + S+D LWD NGK + ++ + F + +AT + G +
Sbjct: 270 NWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARV 329
Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
F + K L+ I I+++P G L +G+ D I+D TG+ L LEGH
Sbjct: 330 FSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTDE 389
Query: 689 IRSLTFSPDSQLLVTASDDGYIKIY 763
I S F+ +++T S D +I+
Sbjct: 390 IFSCAFNYKGDIIITGSKDNTCRIW 414
>ref|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-repeat protein
HUSSY-07) [Canis familiaris].
Length = 468
Score = 90.5 bits (223), Expect = 2e-18
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H ++ + WG + + S D +KVW+ D L GH + +++ +
Sbjct: 231 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 285
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
L A +A I DL+ Q + + + L + L +G+ + ++
Sbjct: 286 ALRTGAFEPAEASINAQDLQGSLQ--ELKDRALRRYNLVRGQGPERLVSGSDDFTLFMWS 343
Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
KK + T + +++ + +SPD + +AS + D I ++D TGK L +L GH +
Sbjct: 344 PAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAV 403
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ +S DS+LLV+ S D +K++DV+ LA L GHA V V + PD
Sbjct: 404 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPD 453
Score = 89.0 bits (219), Expect = 6e-18
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
Frame = +2
Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
SLEGH V+SV S T AS S D +R WDL + ++++SPD
Sbjct: 95 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 154
Query: 467 QYLATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
+ LA+G G++ ++ +GK+ L K+I +++ +P+ +Y+AS + DG +
Sbjct: 155 KTLASGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGSV 214
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D G+ L GH + L + D LL +AS D IK++ L TL GH
Sbjct: 215 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 273
Query: 809 SWVLNVAFCPD 841
WV +A D
Sbjct: 274 HWVNTMALSTD 284
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/140 (30%), Positives = 72/140 (51%)
Frame = +2
Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
+ E +V+GS D + +W ++K L + GHQ + V S I AS+S D I+
Sbjct: 325 QGPERLVSGSDDFTLFMWSPAEDKKPLA-RMTGHQALINQVLFSPDSRIIASASFDKSIK 383
Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
LWD GK + S+ + +A+S DS+ L +G+ + ++ V++ K L
Sbjct: 384 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHAD 443
Query: 560 FILSIAYSPDGKYLASGAID 619
+ ++ +SPDG+ +ASG D
Sbjct: 444 EVYAVDWSPDGQRVASGGKD 463
Score = 67.0 bits (162), Expect = 2e-11
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 9/217 (4%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H +A+ SVA+ K + +GS D V+ W E ++ +GH+ V+S+
Sbjct: 97 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCQGHRHWVLSISW 150
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
S AS + I LWD GKQ+ + AG W S P+ +Y+A+ +
Sbjct: 151 SPDGKTLASGCKNGQILLWDPSTGKQVGRVLAGH-SKWITGLSWEPLHANPECRYMASSS 209
Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
G V ++ +G+ E L + + + + DG L S + D I ++ G L T
Sbjct: 210 KDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 268
Query: 668 LEGHAMPIRSLTFSPDSQLLVTASD--DGYIKIYDVQ 772
L+GH + ++ S D L A + + I D+Q
Sbjct: 269 LQGHGHWVNTMALSTDYALRTGAFEPAEASINAQDLQ 305
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 89.4 bits (220), Expect = 5e-18
Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 1/218 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H A+ SV + N E + + S D L+K+W D K + ++ GH+LG+ V S
Sbjct: 44 HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S+S D +++WD+ +GK +K++ + F+P S + +G+ V I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGHAMPI 691
V++GK +L + ++ ++ DG + S + DG+ A + + L+ P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPV 217
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ FSP+ + ++ A+ D +K++D T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 88.6 bits (218), Expect = 8e-18
Identities = 51/157 (32%), Positives = 83/157 (52%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V SGK +L ++ ++P + SG+ D + I+
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Score = 80.5 bits (197), Expect = 2e-15
Identities = 46/142 (32%), Positives = 70/142 (49%)
Frame = +2
Query: 533 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
+++L K + S+ +SP+G++LAS + D +I I+ GK T+ GH + I + +S
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 713 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXX 892
DS LLV+ASDD +KI+DV TL GH+++V F P
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 893 XGTRTCVHTFFDHQDQVWGVKY 958
T C+ T H D V V +
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHF 179
Score = 77.0 bits (188), Expect = 2e-14
Identities = 43/133 (32%), Positives = 73/133 (54%)
Frame = +2
Query: 443 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
++ FSP+ ++LA+ + + I+G GK E ++ I +A+S D L S + D
Sbjct: 50 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 623 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 802
+ I+D+++GK L TL+GH+ + F+P S L+V+ S D ++I+DV+ TL
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 169
Query: 803 HASWVLNVAFCPD 841
H+ V V F D
Sbjct: 170 HSDPVSAVHFNRD 182
Score = 60.5 bits (145), Expect = 2e-09
Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 48/256 (18%)
Frame = +2
Query: 140 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVS 319
K H I VAW ++ S +V+ S D +K+W K +L+GH V
Sbjct: 81 KTISGHKLGISDVAWSSD----SNLLVSASDDKTLKIWDVSSGKC--LKTLKGHSNYVFC 134
Query: 320 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWT---------------- 445
+ + + S S D +R+WD++ GK +K++ A PV A
Sbjct: 135 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194
Query: 446 -------------------------LAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSL 544
+ FSP+ +Y+ T + ++ GK K Y+
Sbjct: 195 CGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Query: 545 DTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 314
Query: 722 LLVTAS--DDGYIKIY 763
++ +A+ +D IK++
Sbjct: 315 IIASAALENDKTIKLW 330
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris].
Length = 406
Score = 89.0 bits (219), Expect = 6e-18
Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 43/278 (15%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H DAI SV + N K+ + +GS+D + VW + + +++ GH+ V V+
Sbjct: 16 KGHRDAITSVDFSLNTKQ----LASGSMDSCLMVWHMKPQSRAYRFA--GHKDAVTCVNF 69
Query: 329 SHTLPIAASSSLDAHIRLWDLENGK-----------QIKSI-------------DAGPVD 436
S + + AS S D +R+W + N K ++S+ D V
Sbjct: 70 SPSGHLLASGSRDKTVRIW-IPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVK 128
Query: 437 AWTL-------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
W+ FSPD + + + + V ++ S + +S G
Sbjct: 129 VWSTHRQKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGG 188
Query: 560 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 739
F+ + + P G +A+ ++D + ++D+ T +LL + H+ + +L+F P L+TAS
Sbjct: 189 FVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLLTAS 248
Query: 740 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 853
D +KI D+ L TL GH VAF +F
Sbjct: 249 SDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286
Score = 75.9 bits (185), Expect = 5e-14
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 1/195 (0%)
Frame = +2
Query: 266 EKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 445
E L+ +GH+ + SVD S AS S+D+ + +W ++ + AG DA T
Sbjct: 7 EDPSLERHFKGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRF-AGHKDAVT 65
Query: 446 -LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
+ FSP LA+G+ V I+ + + S+ + DG+ L + + D
Sbjct: 66 CVNFSPSGHLLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDK 125
Query: 623 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 802
+ ++ K L +L H +R FSPD +L+V+ASDD +K++D +
Sbjct: 126 TVKVWSTHRQKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE 185
Query: 803 HASWVLNVAFCPDDT 847
H +V V F P T
Sbjct: 186 HGGFVTYVDFHPSGT 200
Score = 69.7 bits (169), Expect = 4e-12
Identities = 42/160 (26%), Positives = 70/160 (43%)
Frame = +2
Query: 452 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 631
FS +++ LA+G+ + ++ ++ + Y + + +SP G LASG+ D +
Sbjct: 27 FSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVR 86
Query: 632 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 811
I+ H +RS+ F D Q LVTASDD +K++ +LS H +
Sbjct: 87 IWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQKFLFSLSQHIN 146
Query: 812 WVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDH 931
WV F PD +R CVH++ +H
Sbjct: 147 WVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEH 186
Score = 67.8 bits (164), Expect = 1e-11
Identities = 44/187 (23%), Positives = 82/187 (43%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ +++VT S D VKVW +K +SL H V S + S+S D ++L
Sbjct: 114 DGQSLVTASDDKTVKVWSTHRQKF--LFSLSQHINWVRCARFSPDGRLIVSASDDKTVKL 171
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD + + + S + F P +A + V ++ V + +
Sbjct: 172 WDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAA 231
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 742
+ ++++ P G YL + + D + I D+ G+LL+TL GH P ++ FS + +
Sbjct: 232 VNALSFHPSGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
Query: 743 DGYIKIY 763
D + ++
Sbjct: 292 DEQVMVW 298
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,793,913
Number of extensions: 1230867
Number of successful extensions: 6320
Number of sequences better than 1.0e-05: 186
Number of HSP's gapped: 5539
Number of HSP's successfully gapped: 428
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008329
(959 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [... 548 e-156
Alignment gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/... 107 1e-23
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 102 4e-22
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 93 2e-19
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 93 2e-19
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 91 9e-19
Alignment gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ... 90 2e-18
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 86 4e-17
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 84 1e-16
Alignment gi|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B... 80 1e-15
>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
Length = 305
Score = 548 bits (1411), Expect = e-156
Identities = 268/282 (95%), Positives = 268/282 (95%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL
Sbjct: 1 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 60
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 120
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240
Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
CPDDTHF GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282
Score = 84.7 bits (208), Expect = 7e-17
Identities = 49/196 (25%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I IYD
Sbjct: 287 SKIVSVGDDQEIHIYD 302
>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L [Sus scrofa].
Length = 589
Score = 107 bits (266), Expect = 1e-23
Identities = 61/178 (34%), Positives = 94/178 (52%)
Frame = +2
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
+GH V VDIS AS S D RLW + ++ D + F P+S Y
Sbjct: 381 QGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATG+ V ++ + G +LS+A+SP+GKYLAS D + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 826
L L GH I SLTFSPDS L+ +AS D ++++D+++ + + G +S ++ V
Sbjct: 501 TLFKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTHCSAPTDGSSSELVGV 558
Score = 78.6 bits (192), Expect = 5e-15
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
S S D IR WDL + W + SP S Y A+G+H ++ + +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFD---R 415
Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
Y L + + + P+ YLA+G+ D + ++ G + GH P+ SL
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLA 475
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 847
FSP+ + L +A +D +K++D+ L L GH + ++ F PD +
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDNITSLTFSPDSS 523
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
NS + TGS D V++W + ++ GH+ V+S+ S AS+ D ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
WDL +G K + + +L FSPDS +A+ + V ++ + +
Sbjct: 495 WDLASGTLFKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRN 541
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 102 bits (253), Expect = 4e-22
Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H A+ SV + N E + + S D L+K+W D K + ++ GH+LG+ V S
Sbjct: 44 HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S+S D +++WD+ +GK +K++ + F+P S + +G+ V I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
V++GK +L + ++ ++ DG + S + DG+ I+D A+G+ L TL + P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ FSP+ + ++ A+ D +K++D T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 95.5 bits (236), Expect = 4e-20
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V SGK +L ++ ++P + SG+ D + I+
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG +I+D TL +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Score = 72.8 bits (177), Expect = 3e-13
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Frame = +2
Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
N S +V+GS D+ V++W + K +L H V +V + + SSS D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
R+WD +G+ +K++ D PV + FSP+ +Y+ T + ++ GK K
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
Y+ K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 713 DSQLLVTAS--DDGYIKIY 763
++ +A+ +D IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 93.2 bits (230), Expect = 2e-19
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ + ++T S D V W+ + +L W L GH V S + AS+S D IRL
Sbjct: 32 DGQRLLTASEDGCVYGWETQSGRL--LWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRL 89
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD+ + ++ + T++FSPDS+ LA+G +V ++ V+SG+ L
Sbjct: 90 WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDI--ATGKLLH-TLEGHAMPIRSLTFSPDSQLLVT 733
I S ++P LA+G+ D I ++D+ TG + H LEGH I L FS LL +
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208
Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
S D I I+ +L L GH +WV ++AF PD
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244
Score = 80.1 bits (196), Expect = 2e-15
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
Frame = +2
Query: 257 WRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD 436
W K++ L+GHQ V +V S AS D + LW++++G+ ++ +
Sbjct: 90 WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149
Query: 437 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIAYSPDGKYLAS 607
+ F+P S LATG+ + ++ + G L+ I + +S G LAS
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208
Query: 608 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 787
G+ D I+I+ +T LL L+GH ++S+ FSPD L +A +K++D
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCT 268
Query: 788 GTLSGHASWVLNVAFCPD 841
TL G + AF PD
Sbjct: 269 DTLKGVLDVAHSCAFTPD 286
Score = 71.2 bits (173), Expect = 8e-13
Identities = 40/129 (31%), Positives = 67/129 (51%)
Frame = +2
Query: 452 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 631
FSPD Q L T + G V + +SG+ + L + +SPDG+ AS + D I
Sbjct: 29 FSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIR 88
Query: 632 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 811
++D+A + L L+GH + +++FSPDS+ L + D + +++VQ + L GH
Sbjct: 89 LWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRD 148
Query: 812 WVLNVAFCP 838
+ + F P
Sbjct: 149 SIQSSDFAP 157
Score = 68.9 bits (167), Expect = 4e-12
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H ++ +V++ + K+ + +G D V +W+ + ++ L GH+ + S D
Sbjct: 102 KGHQRSVETVSFSPDSKQ----LASGGWDKRVMLWEVQSGQVLRH--LVGHRDSIQSSDF 155
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQI---KSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
+ + A+ S D+ IR+WDL G + ++ + L FS LA+G+
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKT 214
Query: 500 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 679
++I+ + L ++ SIA+SPDG LAS + ++D TG+ TL+G
Sbjct: 215 IHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGV 274
Query: 680 AMPIRSLTFSPDSQLLVTASDD 745
S F+PD +LLV+ + D
Sbjct: 275 LDVAHSCAFTPDGKLLVSGTAD 296
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/106 (33%), Positives = 58/106 (54%)
Frame = +2
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
G+ ++ RG+ + S +SPDG+ L + + DG + ++ +G+LL L GH P++
Sbjct: 12 GRVKFYCRHRGE-VNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCR 70
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
FSPD +L + S D I+++DV L GH V V+F PD
Sbjct: 71 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPD 116
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 93.2 bits (230), Expect = 2e-19
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ + ++T S D V W+ + +L W L GH V S + AS+S D IRL
Sbjct: 32 DGQRLLTASEDGCVYGWETQSGRL--LWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIRL 89
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD+ + ++ + T++FSPDS+ LA+G +V ++ V+SG+ L
Sbjct: 90 WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDI--ATGKLLH-TLEGHAMPIRSLTFSPDSQLLVT 733
I S ++P LA+G+ D I ++D+ TG + H LEGH I L FS LL +
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208
Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
S D I I+ +L L GH +WV ++AF PD
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244
Score = 80.1 bits (196), Expect = 2e-15
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
Frame = +2
Query: 257 WRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD 436
W K++ L+GHQ V +V S AS D + LW++++G+ ++ +
Sbjct: 90 WDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS 149
Query: 437 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIAYSPDGKYLAS 607
+ F+P S LATG+ + ++ + G L+ I + +S G LAS
Sbjct: 150 IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLAS 208
Query: 608 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 787
G+ D I+I+ +T LL L+GH ++S+ FSPD L +A +K++D
Sbjct: 209 GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCT 268
Query: 788 GTLSGHASWVLNVAFCPD 841
TL G + AF PD
Sbjct: 269 DTLKGVLDVAHSCAFTPD 286
Score = 71.2 bits (173), Expect = 8e-13
Identities = 40/129 (31%), Positives = 67/129 (51%)
Frame = +2
Query: 452 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 631
FSPD Q L T + G V + +SG+ + L + +SPDG+ AS + D I
Sbjct: 29 FSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSDCTIR 88
Query: 632 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 811
++D+A + L L+GH + +++FSPDS+ L + D + +++VQ + L GH
Sbjct: 89 LWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRD 148
Query: 812 WVLNVAFCP 838
+ + F P
Sbjct: 149 SIQSSDFAP 157
Score = 68.9 bits (167), Expect = 4e-12
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H ++ +V++ + K+ + +G D V +W+ + ++ L GH+ + S D
Sbjct: 102 KGHQRSVETVSFSPDSKQ----LASGGWDKRVMLWEVQSGQVLRH--LVGHRDSIQSSDF 155
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQI---KSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
+ + A+ S D+ IR+WDL G + ++ + L FS LA+G+
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKT 214
Query: 500 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 679
++I+ + L ++ SIA+SPDG LAS + ++D TG+ TL+G
Sbjct: 215 IHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGV 274
Query: 680 AMPIRSLTFSPDSQLLVTASDD 745
S F+PD +LLV+ + D
Sbjct: 275 LDVAHSCAFTPDGKLLVSGTAD 296
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/106 (33%), Positives = 58/106 (54%)
Frame = +2
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
G+ ++ RG+ + S +SPDG+ L + + DG + ++ +G+LL L GH P++
Sbjct: 12 GRVKFYCRHRGE-VNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCR 70
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
FSPD +L + S D I+++DV L GH V V+F PD
Sbjct: 71 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPD 116
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 90.9 bits (224), Expect = 9e-19
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 7/232 (3%)
Frame = +2
Query: 167 IWSVAWGTNKKENSE------TVVTGSLDDLVKVWKWRDEKLDLQWS-LEGHQLGVVSVD 325
+WSV T KK S +++ DD+++ + DEK + L GH V
Sbjct: 358 VWSV---TPKKLRSVKQAADLSLIDKESDDVLE--RIMDEKTASELKILYGHSGPVYGAS 412
Query: 326 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 505
S SSS D +RLW L+ + W FSP Y +G H
Sbjct: 413 FSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVAR 472
Query: 506 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 685
++ + + + + P+ Y+A+G+ D + ++D+ G + GH
Sbjct: 473 LWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKG 532
Query: 686 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
PI SLTFSP+ + L T + DG + ++D+ H + G L GH V ++ F D
Sbjct: 533 PIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 584
Score = 78.2 bits (191), Expect = 6e-15
Identities = 52/199 (26%), Positives = 93/199 (46%)
Frame = +2
Query: 182 WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
+G + + +++ S D V++W + +GH V S S
Sbjct: 409 YGASFSPDRNYLLSSSEDGTVRLWSL--QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 466
Query: 362 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
D RLW ++ + ++ D F P+S Y+ATG+ V ++ V +G
Sbjct: 467 HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRI 526
Query: 542 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
I S+ +SP+G++LA+GA DG + ++DI G ++ L+GH + SL FS D +
Sbjct: 527 FTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGE 586
Query: 722 LLVTASDDGYIKIYDVQHA 778
+L + S D ++++D A
Sbjct: 587 ILASGSMDNTVRLWDAVKA 605
Score = 50.1 bits (118), Expect = 2e-06
Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 2/219 (0%)
Frame = +2
Query: 308 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLAT 481
G+ +VD++ + A D+ +R+W + K+++S+ D + D + +
Sbjct: 334 GLTAVDVTDDSSLIAGGFADSTVRVWSV-TPKKLRSVKQA-ADLSLIDKESDDVLERIMD 391
Query: 482 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 661
++ I SG + ++SPD YL S + DG + ++ + T L
Sbjct: 392 EKTASELKILYGHSGP-----------VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCL 440
Query: 662 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+GH P+ FSP V+ D +++ H +GH + V F P+
Sbjct: 441 VGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPN 500
Query: 842 DTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
+ CV F H+ + + +
Sbjct: 501 SNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 539
>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
Length = 485
Score = 90.1 bits (222), Expect = 2e-18
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
Frame = +2
Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
SLEGH V+SV S T AS S D +R WDL + ++++SPD
Sbjct: 109 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 168
Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
+ LA+G G++ ++ +GK+ +L K+I ++++ +P+ +Y+AS + DG +
Sbjct: 169 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 228
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D G+ L GH + L + D LL +AS D IK++ L TL GH
Sbjct: 229 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 287
Query: 809 SWVLNVAFCPD 841
WV +A D
Sbjct: 288 HWVNTMALSTD 298
Score = 90.1 bits (222), Expect = 2e-18
Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 1/230 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H ++ + WG + + S D +KVW+ D L GH + +++ +
Sbjct: 245 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 299
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
L A +A + DL Q + + + L + L +G+ + ++
Sbjct: 300 ALRTGAFEPAEASVNAQDLRGSLQ--ELKERALSRYNLVRGRGLERLVSGSDDFTLFLWS 357
Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
KK + T + +++ + +SPD + +AS + D I ++D TGK L +L GH +
Sbjct: 358 PAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAV 417
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ +S DS+LLV+ S D +K++DV+ LA L GHA V V + PD
Sbjct: 418 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPD 467
Score = 68.6 bits (166), Expect = 5e-12
Identities = 43/143 (30%), Positives = 74/143 (51%)
Frame = +2
Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
E +V+GS D + +W ++K L + GHQ + V S I AS+S D I+LWD
Sbjct: 342 ERLVSGSDDFTLFLWSPAEDKKPLA-RMTGHQALINQVLFSPDSRIIASASFDKSIKLWD 400
Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
GK + S+ + +A+S DS+ L +G+ + ++ V++ K L +
Sbjct: 401 GRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVY 460
Query: 569 SIAYSPDGKYLASGAIDGIINIF 637
++ +SPDG+ +ASG D + I+
Sbjct: 461 AVDWSPDGQRVASGGKDKCLRIW 483
Score = 65.5 bits (158), Expect = 4e-11
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 7/199 (3%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H +A+ SVA+ K + +GS D V+ W E ++ +GH+ V+S+
Sbjct: 111 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCQGHRHWVLSISW 164
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
S AS + I LWD GKQ+ AG W A S P+ +Y+A+ +
Sbjct: 165 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGH-SKWITALSWEPLHANPECRYVASSS 223
Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
G V ++ +G+ E L + + + + DG L S + D I ++ G L T
Sbjct: 224 KDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 282
Query: 668 LEGHAMPIRSLTFSPDSQL 724
L+GH + ++ S D L
Sbjct: 283 LQGHGHWVNTMALSTDYAL 301
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 85.5 bits (210), Expect = 4e-17
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 42/277 (15%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H DA+ V + N K+ + +GS+D + VW + + +++ GH+ V V+
Sbjct: 16 KGHRDAVTCVDFSFNMKQ----LASGSMDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNF 69
Query: 329 SHTLPIAASSSLDAHIRLWD----------------------LENGKQ-IKSIDAGPVDA 439
S + + AS S D +R+W +G+ + + D +
Sbjct: 70 SPSGHLLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKV 129
Query: 440 WTL-------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
W+ FSPD + + + + V ++ S + +S G F
Sbjct: 130 WSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGF 189
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 742
+ + + P G +A+ +D + ++D+ T +LL + H+ + +L+F P LVTAS
Sbjct: 190 VTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASS 249
Query: 743 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 853
D +KI D+ L TL GH VAF +F
Sbjct: 250 DSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYF 286
Score = 73.9 bits (180), Expect = 1e-13
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 1/195 (0%)
Frame = +2
Query: 266 EKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 445
E L+ +GH+ V VD S + AS S+D+ + +W ++ + G DA T
Sbjct: 7 EDPSLERHFKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRF-TGHKDAVT 65
Query: 446 -LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
+ FSP LA+G+ V I+ + + S+ + DG+ + + D
Sbjct: 66 CVNFSPSGHLLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDK 125
Query: 623 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 802
I ++ K L +L H +R FSPD +L+V+ASDD +K++D +
Sbjct: 126 TIKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE 185
Query: 803 HASWVLNVAFCPDDT 847
H +V V F P T
Sbjct: 186 HGGFVTYVDFHPSGT 200
Score = 65.9 bits (159), Expect = 3e-11
Identities = 43/187 (22%), Positives = 80/187 (42%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ ++ VT S D +KVW +K +SL H V S + S+S D ++L
Sbjct: 114 DGQSFVTASDDKTIKVWSTHRQKF--LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKL 171
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD + + + S + F P +A V ++ V + +
Sbjct: 172 WDKTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAA 231
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 742
+ ++++ P G YL + + D + I D+ G+LL+TL GH P ++ FS + +
Sbjct: 232 VNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291
Query: 743 DGYIKIY 763
D + ++
Sbjct: 292 DEQVMVW 298
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 84.0 bits (206), Expect = 1e-16
Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I +W +GK K++ ++ +A+S
Sbjct: 33 LKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKALKGHSLEISDVAWS 92
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V GK +L ++ ++P + SG+ D + I+
Sbjct: 93 SDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIW 152
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
++ TG+ L TL H+ P+ ++ F+ L+V+ S DG +I+D TL +
Sbjct: 153 EVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPP 212
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 213 ISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNE 254
Score = 81.6 bits (200), Expect = 6e-16
Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 4/239 (1%)
Frame = +2
Query: 140 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVS 319
K + H I VAW ++ S +V+ S D +K+W R K +L+GH V
Sbjct: 77 KALKGHSLEISDVAWSSD----SGRLVSASDDKTLKIWDVRVGKC--LKTLKGHSNYVFC 130
Query: 320 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 499
+ + + S S D +++W+++ G+ +K++ A + F+ + +G++ G
Sbjct: 131 CNFNPPSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGV 190
Query: 500 VNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 676
I+ SG+ +L D I + +SP+GKY+ +D + ++D + G+ L T G
Sbjct: 191 CRIWDAASGQCLKTLVDDDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTG 250
Query: 677 HAMPIRSL--TFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
H + FS S + +V+ S+D + I+++Q + L GH V++ A P +
Sbjct: 251 HKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTE 309
Score = 67.8 bits (164), Expect = 9e-12
Identities = 46/194 (23%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
Frame = +2
Query: 206 SETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 385
S +++GS D+ VK+W+ + + +L H V +V + + S S D R+W
Sbjct: 137 SNLIISGSFDESVKIWEVKTGRC--LKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIW 194
Query: 386 DLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDT 550
D +G+ +K++ D P+ + FSP+ +Y+ T + ++ G+ K Y+
Sbjct: 195 DAASGQCLKTLVDDDNPPISF--VKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHK 252
Query: 551 RGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 727
K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P ++
Sbjct: 253 NEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENII 312
Query: 728 VTAS--DDGYIKIY 763
+A+ +D +K++
Sbjct: 313 ASAALGNDKTVKLW 326
>ref|XP_003360782.1| PREDICTED: POC1 centriolar protein homolog B-like, partial [Sus
scrofa].
Length = 416
Score = 80.5 bits (197), Expect = 1e-15
Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 42/246 (17%)
Frame = +2
Query: 221 TGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG 400
TGS D + +W ++ + ++ GH+ V SV S + AS+S D +RLW +
Sbjct: 80 TGSWDTFLMLWSFKPQARAFRYV--GHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKR 137
Query: 401 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL------------ 544
+ A ++ FS D Q+LAT + + + YSL
Sbjct: 138 GKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIXXXXXHRQRFLYSLYRHTHWVRCAKF 197
Query: 545 -------------------DTRGK-----------FILSIAYSPDGKYLASGAIDGIINI 634
DT K F + ++P+G +AS D + I
Sbjct: 198 SPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPNGTCIASAGSDHTVKI 257
Query: 635 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 814
+DI KLL + H+ + ++F P L+TAS DG +KI D+ L TL GH
Sbjct: 258 WDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGP 317
Query: 815 VLNVAF 832
V V+F
Sbjct: 318 VFTVSF 323
Score = 64.7 bits (156), Expect = 7e-11
Identities = 38/160 (23%), Positives = 73/160 (45%)
Frame = +2
Query: 284 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 463
+SL H V S + S S D I++WD N + + + A + F+P+
Sbjct: 183 YSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPN 242
Query: 464 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 643
+A+ V I+ + K + +++ P G YL + + DG + I D+
Sbjct: 243 GTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDL 302
Query: 644 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 763
G+L++TL+GH P+ +++FS +L + D + ++
Sbjct: 303 LEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLLW 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,454,786
Number of extensions: 766321
Number of successful extensions: 3890
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 3466
Number of HSP's successfully gapped: 228
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008329
(959 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020546.1| WD repeat-containing protein 61 isoform a [M... 537 e-153
Alignment gi|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus ... 537 e-153
Alignment gi|NP_001020547.1| WD repeat-containing protein 61 isoform b [M... 344 5e-95
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 103 3e-22
Alignment gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated... 102 4e-22
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 102 6e-22
Alignment gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus... 101 8e-22
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 92 8e-19
Alignment gi|NP_663406.2| notchless protein homolog 1 [Mus musculus]. 91 2e-18
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 89 5e-18
>ref|NP_001020546.1| WD repeat-containing protein 61 isoform a [Mus musculus].
Length = 305
Score = 537 bits (1383), Expect = e-153
Identities = 261/282 (92%), Positives = 266/282 (94%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQYSILFKQEQAHDDAIWSVAW TNKKEN ETVVTGSLDDLVKVWKWRDE+L+LQWSL
Sbjct: 1 MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSL 60
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ+KSIDAGPVDAWTLAFSPDSQY
Sbjct: 61 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQY 120
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTH+GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240
Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
CPDDTHF GTRTC+HTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKY 282
Score = 84.7 bits (208), Expect = 1e-16
Identities = 48/196 (24%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 109 AWTLAFSPDSQYLATGTHMGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNG 286
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I +YD
Sbjct: 287 SKIVSVGDDQEIHVYD 302
>ref|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus musculus].
Length = 305
Score = 537 bits (1383), Expect = e-153
Identities = 261/282 (92%), Positives = 266/282 (94%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQYSILFKQEQAHDDAIWSVAW TNKKEN ETVVTGSLDDLVKVWKWRDE+L+LQWSL
Sbjct: 1 MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSL 60
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ+KSIDAGPVDAWTLAFSPDSQY
Sbjct: 61 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQY 120
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTH+GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240
Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
CPDDTHF GTRTC+HTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKY 282
Score = 84.7 bits (208), Expect = 1e-16
Identities = 48/196 (24%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 109 AWTLAFSPDSQYLATGTHMGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNG 286
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I +YD
Sbjct: 287 SKIVSVGDDQEIHVYD 302
>ref|NP_001020547.1| WD repeat-containing protein 61 isoform b [Mus musculus].
Length = 207
Score = 344 bits (883), Expect = 5e-95
Identities = 167/184 (90%), Positives = 170/184 (92%)
Frame = +2
Query: 407 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 586
+KSIDAGPVDAWTLAFSPDSQYLATGTH+GKVNIFGVESGKKEYSLDTRGKFILSIAYSP
Sbjct: 1 MKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 60
Query: 587 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 766
DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD
Sbjct: 61 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 120
Query: 767 VQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVW 946
VQHANLAGTLSGHASWVLNVAFCPDDTHF GTRTC+HTFFDHQDQVW
Sbjct: 121 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVW 180
Query: 947 GVKY 958
GVKY
Sbjct: 181 GVKY 184
Score = 84.7 bits (208), Expect = 1e-16
Identities = 48/196 (24%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 11 AWTLAFSPDSQYLATGTHMGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 68
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 69 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 128
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 129 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNG 188
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I +YD
Sbjct: 189 SKIVSVGDDQEIHVYD 204
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 103 bits (256), Expect = 3e-22
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 3/217 (1%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ T++T S D V VW + +L W L GH+ V S S + ASSS D IRL
Sbjct: 37 DGRTLLTASDDGCVYVWGTKSGRL--LWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRL 94
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD+ K + + T++FSPDS+ LA+G + ++ V+SG++ + L
Sbjct: 95 WDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDS 154
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLL---HTLEGHAMPIRSLTFSPDSQLLVT 733
I S +SP LA+G+ D ++I+D+ + H LEGH I L +S S LL +
Sbjct: 155 IQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSA-SGLLAS 213
Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
S D I ++ NL L GH WV ++AF PD+
Sbjct: 214 GSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDE 250
Score = 83.2 bits (204), Expect = 3e-16
Identities = 44/130 (33%), Positives = 71/130 (54%)
Frame = +2
Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
AFSPD + L T + G V ++G +SG+ + L + S +SPDG+ +AS + D I
Sbjct: 33 AFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSI 92
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D+A K LH L+GH + +++FSPDS+ L + D +++VQ L GH
Sbjct: 93 RLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHC 152
Query: 809 SWVLNVAFCP 838
+ + F P
Sbjct: 153 DSIQSSDFSP 162
Score = 76.3 bits (186), Expect = 3e-14
Identities = 46/166 (27%), Positives = 75/166 (45%)
Frame = +2
Query: 446 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 625
+ ++P + T VG+V +G G+ S A+SPDG+ L + + DG
Sbjct: 1 MEWAPMNIRAPTRLAVGRVRFYGQHHGEVNCS-----------AFSPDGRTLLTASDDGC 49
Query: 626 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ ++ +G+LL L GH P++S FSPD +L+ ++S D I+++DV + L GH
Sbjct: 50 VYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGH 109
Query: 806 ASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQV 943
V V+F PD + VH H D +
Sbjct: 110 QRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSI 155
Score = 61.6 bits (148), Expect = 9e-10
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 4/201 (1%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EKLDLQWSLEGHQLGVVSVD 325
+ H ++ +V++ + K+ + +G D VW+ + ++ L L GH + S D
Sbjct: 107 KGHQRSVETVSFSPDSKQ----LASGGWDKRAIVWEVQSGRRVHL---LVGHCDSIQSSD 159
Query: 326 ISHTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDSQYLATGTHVG 496
S T A+ S D+ + +WDL + S ++ + L +S S LA+G+
Sbjct: 160 FSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSA-SGLLASGSWDK 218
Query: 497 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 676
+ ++ + L ++ S+A+SPD LAS + ++D TGK L TL+G
Sbjct: 219 TICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKG 278
Query: 677 HAMPIRSLTFSPDSQLLVTAS 739
+ F+PD +LLV+ +
Sbjct: 279 MLDVAHACIFTPDGKLLVSGA 299
>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L [Mus musculus].
Length = 589
Score = 102 bits (254), Expect = 4e-22
Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Frame = +2
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
+GH V VDIS AS S D RLW + ++ D + F P+S Y
Sbjct: 381 QGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATG+ V ++ + G +LS+++SP+GKYLAS D + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASG 500
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ-----------HANLAGTLS 799
L L GH I SL FSPDS L+ +AS D ++++D++ L G +
Sbjct: 501 TLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYT 560
Query: 800 GHASWVLNVAF 832
G S VL+V F
Sbjct: 561 GQMSNVLSVQF 571
Score = 80.5 bits (197), Expect = 2e-15
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
S S D IR WDL + W + SP S Y A+G+H ++ + +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFD---R 415
Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
Y L + + + P+ YLA+G+ D + ++ G + GH P+ SL+
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLS 475
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
FSP+ + L +A +D +K++D+ L L GH + ++AF PD
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPD 521
Score = 52.4 bits (124), Expect = 5e-07
Identities = 32/107 (29%), Positives = 53/107 (49%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
NS + TGS D V++W + ++ GH+ V+S+ S AS+ D ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLSFSPNGKYLASAGEDQRLKL 494
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
WDL +G K + +LAFSPDS +A+ + V ++ + S
Sbjct: 495 WDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRS 541
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 102 bits (253), Expect = 6e-22
Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H A+ SV + N E + + S D L+K+W D K + ++ GH+LG+ V S
Sbjct: 44 HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S+S D +++WD+ +GK +K++ + F+P S + +G+ V I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
V++GK +L + ++ ++ DG + S + DG+ I+D A+G+ L TL + P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ FSP+ + ++ A+ D +K++D T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 95.5 bits (236), Expect = 5e-20
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V SGK +L ++ ++P + SG+ D + I+
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG +I+D TL +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Frame = +2
Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
N S +V+GS D+ V++W + K +L H V +V + + SSS D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
R+WD +G+ +K++ D PV + FSP+ +Y+ T + ++ GK K
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
Y+ K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 713 DSQLLVTAS--DDGYIKIY 763
++ +A+ +D IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330
>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
Length = 658
Score = 101 bits (252), Expect = 8e-22
Identities = 61/230 (26%), Positives = 110/230 (47%)
Frame = +2
Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
AH + S+ G K + + TG D V +W K + SL GH V SV ++
Sbjct: 18 AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72
Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
+ + S IR+WDLE K ++++ + +L F P +++A+G+ + ++
Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132
Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
+ + + + + +SPDGK+LAS A D + ++D+ GK++ GH P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ F P+ LL + S D I+ +D++ + + G V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 77.4 bits (189), Expect = 2e-14
Identities = 53/211 (25%), Positives = 95/211 (45%)
Frame = +2
Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
E +V GS ++VW K+ +L GH+ + S+D AS S D +I+LWD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
+ + L FSPD ++LA+ V ++ + +GK +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193
Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
+ + P+ LASG+ D I +D+ +++ +EG P+RS+ F+PD L + D
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+++Y + + + V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVNWGKVADLAICND 283
Score = 77.0 bits (188), Expect = 2e-14
Identities = 42/167 (25%), Positives = 80/167 (47%)
Frame = +2
Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
+ A+ D + LW + I S+ ++ + + + G+ G + ++ +E+
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
K +L I S+ + P G+++ASG+ D I ++DI + GH+ +R L
Sbjct: 95 AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
FSPD + L +A+DD +K++D+ + GH V V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 91.7 bits (226), Expect = 8e-19
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 4/229 (1%)
Frame = +2
Query: 167 IWSVA---WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWS-LEGHQLGVVSVDISH 334
+WSV + K+ + +++ DD+++ + DEK + L GH V S
Sbjct: 497 VWSVTPKKLRSVKQASDLSLIDKESDDVLE--RIMDEKTASELKILYGHSGPVYGASFSP 554
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
SSS D +RLW L+ + W FSP Y +G H ++
Sbjct: 555 DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 614
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 694
+ + + + P+ Y+A+G+ D + ++D+ G + GH PI
Sbjct: 615 TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 674
Query: 695 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
SLTFSP+ + L T + DG + ++D+ H + G L GH V ++ F D
Sbjct: 675 SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 723
Score = 78.2 bits (191), Expect = 9e-15
Identities = 52/199 (26%), Positives = 93/199 (46%)
Frame = +2
Query: 182 WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
+G + + +++ S D V++W + +GH V S S
Sbjct: 548 YGASFSPDRNYLLSSSEDGTVRLWSL--QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 605
Query: 362 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
D RLW ++ + ++ D F P+S Y+ATG+ V ++ V +G
Sbjct: 606 HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRI 665
Query: 542 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
I S+ +SP+G++LA+GA DG + ++DI G ++ L+GH + SL FS D +
Sbjct: 666 FTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGE 725
Query: 722 LLVTASDDGYIKIYDVQHA 778
+L + S D ++++D A
Sbjct: 726 ILASGSMDNTVRLWDAVKA 744
>ref|NP_663406.2| notchless protein homolog 1 [Mus musculus].
Length = 485
Score = 90.5 bits (223), Expect = 2e-18
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H ++ + WG + + S D +KVW+ D L GH + +++ +
Sbjct: 245 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 299
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
L A +A + DL+ +K + + L + L +G+ + ++
Sbjct: 300 ALRTGAFEPAEATVNAQDLQGS--LKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWS 357
Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
KK + T + +++ + +SPD + +AS + D I ++D TGK L +L GH +
Sbjct: 358 PAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAV 417
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ +S DS+LLV+ S D +K++DV+ LA L GHA V V + PD
Sbjct: 418 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPD 467
Score = 87.4 bits (215), Expect = 1e-17
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
Frame = +2
Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
SLEGH V+SV S T AS S D +R WDL + ++++SPD
Sbjct: 109 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168
Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
+ LA+G G+V ++ +G + +L K+I +++ +P+ +Y+AS + DG +
Sbjct: 169 KKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSV 228
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D G+ L GH + L + D LL +AS D IK++ L TL GH
Sbjct: 229 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 287
Query: 809 SWVLNVAFCPD 841
WV +A D
Sbjct: 288 HWVNTMALSTD 298
Score = 69.3 bits (168), Expect = 4e-12
Identities = 43/146 (29%), Positives = 75/146 (51%)
Frame = +2
Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
+ E +V+GS D + +W ++K L + GHQ + V S I AS+S D I+
Sbjct: 339 QGPERLVSGSDDFTLFLWSPAEDKKPLA-RMTGHQALINQVLFSPDSRIVASASFDKSIK 397
Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
LWD GK + S+ + +A+S DS+ L +G+ + ++ V++ K L
Sbjct: 398 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHAD 457
Query: 560 FILSIAYSPDGKYLASGAIDGIINIF 637
+ ++ +SPDG+ +ASG D + I+
Sbjct: 458 EVYAVDWSPDGQRVASGGKDKCLRIW 483
Score = 59.3 bits (142), Expect = 4e-09
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H +A+ SVA+ K + +GS D V+ W E ++ +GH+ V+S+
Sbjct: 111 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCKGHRHWVLSISW 164
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-----AW-TLAFSPDSQYLATGTH 490
S AS + + LWD G Q+ G +W L +P+ +Y+A+ +
Sbjct: 165 SPDGKKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSK 224
Query: 491 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 670
G V ++ +G+ E L + + + + DG L S + D I ++ G L TL
Sbjct: 225 DGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 283
Query: 671 EGHAMPIRSLTFSPDSQL 724
+GH + ++ S D L
Sbjct: 284 QGHGHWVNTMALSTDYAL 301
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 89.0 bits (219), Expect = 5e-18
Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+ +L GH + SV S ASS+ DA I +W +G K++ ++ +A+S
Sbjct: 31 LRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWS 90
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + ++ + SGK +L F+ ++P + SG+ D + I+
Sbjct: 91 SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIW 150
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
++ TGK L TL H+ PI ++ F+ + L+V+ S DG +I+D TL+ +
Sbjct: 151 EVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPP 210
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 211 VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNE 252
Score = 88.6 bits (218), Expect = 7e-18
Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 4/232 (1%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H I VAW ++ S +V+ S D +KVW R K +L+GH V D +
Sbjct: 80 HSLEISDVAWSSD----SSRLVSASDDKTLKVWDMRSGKC--LKTLKGHSDFVFCCDFNP 133
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S S D +++W+++ GK +K++ A + F+ + + +G++ G I+
Sbjct: 134 PSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWD 193
Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
SG+ +L G +S + +SP+GKY+ + +D + ++D + G+ L T GH
Sbjct: 194 AASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEK 253
Query: 692 RSLTFS---PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 838
L S + +V+ S+D + I+++Q + L GH V++ A P
Sbjct: 254 YCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHP 305
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,946,794
Number of extensions: 1030634
Number of successful extensions: 5035
Number of sequences better than 1.0e-05: 137
Number of HSP's gapped: 4429
Number of HSP's successfully gapped: 319
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008329
(959 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens]. 545 e-155
Alignment gi|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated... 104 1e-22
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 102 5e-22
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 102 7e-22
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 102 7e-22
Alignment gi|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sa... 101 9e-22
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 100 3e-21
Alignment gi|NP_008882.2| transcription initiation factor TFIID subunit 5... 92 9e-19
Alignment gi|NP_060566.2| notchless protein homolog 1 isoform a [Homo sap... 90 3e-18
Alignment gi|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Hom... 87 3e-17
>ref|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].
Length = 305
Score = 545 bits (1404), Expect = e-155
Identities = 266/282 (94%), Positives = 267/282 (94%)
Frame = +2
Query: 113 MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSL 292
MTNQY ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE+LDLQWSL
Sbjct: 1 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL 60
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
Sbjct: 61 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 120
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
Sbjct: 121 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 180
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 832
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
Sbjct: 181 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240
Query: 833 CPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
CPDDTHF GTRTCVHTFFDHQDQVWGVKY
Sbjct: 241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 282
Score = 84.7 bits (208), Expect = 1e-16
Identities = 49/196 (25%), Positives = 96/196 (48%)
Frame = +2
Query: 179 AWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASS 358
AW +S+ + TG+ V ++ K + +SL+ ++S+ S AS
Sbjct: 109 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASG 166
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
++D I ++D+ GK + +++ + +L FSPDSQ L T + G + I+ V+
Sbjct: 167 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 226
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+L ++L++A+ PD + S + D + ++D+ T +HT H + + ++ +
Sbjct: 227 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 286
Query: 719 QLLVTASDDGYIKIYD 766
+V+ DD I IYD
Sbjct: 287 SKIVSVGDDQEIHIYD 302
>ref|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L isoform a [Homo sapiens].
Length = 589
Score = 104 bits (260), Expect = 1e-22
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Frame = +2
Query: 293 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 472
+GH V +DIS AS S D RLW + ++ D + F P+S Y
Sbjct: 381 QGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 473 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 652
LATG+ V ++ + G +LS+A+SP+GKYLAS D + ++D+A+G
Sbjct: 441 LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500
Query: 653 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-----------ANLAGTLS 799
L L GH I SLTFSPDS L+ +AS D ++++D+++ + L G +
Sbjct: 501 TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYT 560
Query: 800 GHASWVLNVAF 832
G S VL+V F
Sbjct: 561 GQMSNVLSVQF 571
Score = 79.3 bits (194), Expect = 5e-15
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Frame = +2
Query: 353 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 532
S S D IR WDL + W L SP S Y A+G+H ++ + +
Sbjct: 359 SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFD---R 415
Query: 533 EYSLDTRGKFILSI---AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
Y L + + + P+ YLA+G+ D + ++ G + GH P+ SL
Sbjct: 416 TYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLA 475
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
FSP+ + L +A +D +K++D+ L L GH + ++ F PD
Sbjct: 476 FSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPD 521
Score = 48.9 bits (115), Expect = 7e-06
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
NS + TGS D V++W + ++ GH+ V+S+ S AS+ D ++L
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKL 494
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
WDL +G K + + +L FSPDS +A+ + V ++ + +
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 102 bits (254), Expect = 5e-22
Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 2/283 (0%)
Frame = +2
Query: 116 TNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-EKLDLQWSL 292
+N LFK +AH + +VA ++ +TGS D K+W E+L+ +L
Sbjct: 78 SNHTFYLFKVLKAHILPLTNVALN----KSGSCFITGSYDRTCKLWDTASGEELN---TL 130
Query: 293 EGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 469
EGH+ V ++ ++ A+ S D +LW +E GK + + L+F+P S
Sbjct: 131 EGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST 190
Query: 470 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 649
+ATG+ ++ +++G++ Y+L I+S++++ G + +G+ D + ++D T
Sbjct: 191 LVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADT 250
Query: 650 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 829
G+ ++ L GH I S +F+ D L++T S D K++D + TL+GH +L+
Sbjct: 251 GRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSC 310
Query: 830 FCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
F TR C+ H+ ++ + +
Sbjct: 311 FDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISF 353
Score = 100 bits (248), Expect = 3e-21
Identities = 59/270 (21%), Positives = 117/270 (43%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H + ++++A+ + + TGS D K+W K + GH +V +
Sbjct: 131 EGHRNVVYAIAFNN---PYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSF 185
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 508
+ + A+ S+D +LWD++NG+++ ++ + +L+F+ + TG+ V +
Sbjct: 186 NPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVV 245
Query: 509 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 688
+ ++G+K L I S +++ D + +G++D ++D GK + TL GH
Sbjct: 246 WDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDE 305
Query: 689 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFXXXXX 868
I F +L+ TAS DG +I+ L GH + ++F P H
Sbjct: 306 ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSS 365
Query: 869 XXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
T C+ H D+++ +
Sbjct: 366 DKTARIWDAQTGQCLQVLEGHTDEIFSCAF 395
Score = 82.0 bits (201), Expect = 7e-16
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 1/206 (0%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW-RDEKLDLQWSLEGHQLGVVSVD 325
+ H I S+++ T+ + ++TGS D V VW K+++ L GH + S
Sbjct: 216 RGHSAEIISLSFNTS----GDRIITGSFDHTVVVWDADTGRKVNI---LIGHCAEISSAS 268
Query: 326 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 505
+ + + S+D +LWD NGK + ++ + F + +AT + G
Sbjct: 269 FNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTAR 328
Query: 506 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 685
IF + K L+ I I+++P G +L +G+ D I+D TG+ L LEGH
Sbjct: 329 IFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTD 388
Query: 686 PIRSLTFSPDSQLLVTASDDGYIKIY 763
I S F+ +++T S D +I+
Sbjct: 389 EIFSCAFNYKGNIVITGSKDNTCRIW 414
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 102 bits (253), Expect = 7e-22
Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H A+ SV + N E + + S D L+K+W D K + ++ GH+LG+ V S
Sbjct: 44 HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S+S D +++WD+ +GK +K++ + F+P S + +G+ V I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
V++GK +L + ++ ++ DG + S + DG+ I+D A+G+ L TL + P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ FSP+ + ++ A+ D +K++D T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 95.5 bits (236), Expect = 6e-20
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V SGK +L ++ ++P + SG+ D + I+
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG +I+D TL +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Frame = +2
Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
N S +V+GS D+ V++W + K +L H V +V + + SSS D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
R+WD +G+ +K++ D PV + FSP+ +Y+ T + ++ GK K
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
Y+ K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 713 DSQLLVTAS--DDGYIKIY 763
++ +A+ +D IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 102 bits (253), Expect = 7e-22
Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 1/218 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H A+ SV + N E + + S D L+K+W D K + ++ GH+LG+ V S
Sbjct: 44 HTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSS 97
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
+ S+S D +++WD+ +GK +K++ + F+P S + +G+ V I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI 691
V++GK +L + ++ ++ DG + S + DG+ I+D A+G+ L TL + P+
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 805
+ FSP+ + ++ A+ D +K++D T +GH
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 95.5 bits (236), Expect = 6e-20
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)
Frame = +2
Query: 278 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 457
L+++L GH V SV S ASSS D I++W +GK K+I + +A+S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 458 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 637
DS L + + + I+ V SGK +L ++ ++P + SG+ D + I+
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 638 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 817
D+ TGK L TL H+ P+ ++ F+ D L+V++S DG +I+D TL +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 818 LN-VAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQ 940
++ V F P+ + C+ T+ H+++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Frame = +2
Query: 191 NKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 370
N S +V+GS D+ V++W + K +L H V +V + + SSS D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 371 HIRLWDLENGKQIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KE 535
R+WD +G+ +K++ D PV + FSP+ +Y+ T + ++ GK K
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 536 YSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 712
Y+ K+ + +S GK++ SG+ D ++ I+++ T +++ L+GH + S P
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 713 DSQLLVTAS--DDGYIKIY 763
++ +A+ +D IK++
Sbjct: 312 TENIIASAALENDKTIKLW 330
>ref|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sapiens].
Length = 655
Score = 101 bits (252), Expect = 9e-22
Identities = 61/230 (26%), Positives = 110/230 (47%)
Frame = +2
Query: 152 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDIS 331
AH + S+ G K + + TG D V +W K + SL GH V SV ++
Sbjct: 18 AHASNVSSLVLG---KASGRLLATGGDDCRVNLWSIN--KPNCIMSLTGHTSPVESVRLN 72
Query: 332 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 511
+ + S IR+WDLE K ++++ + +L F P +++A+G+ + ++
Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLW 132
Query: 512 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
+ + + + + +SPDGK+LAS A D + ++D+ GK++ GH P+
Sbjct: 133 DIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPV 192
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ F P+ LL + S D I+ +D++ + + G V +V F PD
Sbjct: 193 NVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 77.4 bits (189), Expect = 2e-14
Identities = 53/211 (25%), Positives = 95/211 (45%)
Frame = +2
Query: 209 ETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 388
E +V GS ++VW K+ +L GH+ + S+D AS S D +I+LWD
Sbjct: 76 ELIVAGSQSGSIRVWDLEAAKI--LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWD 133
Query: 389 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 568
+ + L FSPD ++LA+ V ++ + +GK +
Sbjct: 134 IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN 193
Query: 569 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 748
+ + P+ LASG+ D I +D+ +++ +EG P+RS+ F+PD L + D
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
Query: 749 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+++Y + + + V ++A C D
Sbjct: 254 -LRVYGWEPERCFDVVLVNWGKVADLAICND 283
Score = 77.0 bits (188), Expect = 2e-14
Identities = 42/167 (25%), Positives = 80/167 (47%)
Frame = +2
Query: 344 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 523
+ A+ D + LW + I S+ ++ + + + G+ G + ++ +E+
Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA 94
Query: 524 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 703
K +L I S+ + P G+++ASG+ D I ++DI + GH+ +R L
Sbjct: 95 AKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLR 154
Query: 704 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
FSPD + L +A+DD +K++D+ + GH V V F P++
Sbjct: 155 FSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNE 201
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 100 bits (248), Expect = 3e-21
Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 3/217 (1%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+ + ++TGS D V W+ R +L W L GH V S + AS+S D +RL
Sbjct: 32 DGQMLLTGSEDGCVYGWETRSGQL--LWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRL 89
Query: 383 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 562
WD+ K ++ + T++FSPDS+ LA+G +V ++ V+SG+ L
Sbjct: 90 WDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDS 149
Query: 563 ILSIAYSPDGKYLASGAIDGIINIFDI--ATGKLLH-TLEGHAMPIRSLTFSPDSQLLVT 733
I S +SP LA+G+ D ++I+D+ T + H LEGH+ I L +S S LL +
Sbjct: 150 IQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA-SGLLAS 208
Query: 734 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 844
S D I I+ ++L L GH +WV ++AF PD+
Sbjct: 209 GSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDE 245
Score = 78.2 bits (191), Expect = 1e-14
Identities = 43/130 (33%), Positives = 67/130 (51%)
Frame = +2
Query: 449 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 628
AFSPD Q L TG+ G V + SG+ + L + +SPDG AS + D +
Sbjct: 28 AFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTV 87
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
++D+A K L L+GH + +++FSPDS+ L + D + ++DVQ + L GH
Sbjct: 88 RLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHR 147
Query: 809 SWVLNVAFCP 838
+ + F P
Sbjct: 148 DSIQSSDFSP 157
Score = 72.0 bits (175), Expect = 7e-13
Identities = 41/117 (35%), Positives = 61/117 (52%)
Frame = +2
Query: 491 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 670
V +V FG G+ + S A+SPDG+ L +G+ DG + ++ +G+LL L
Sbjct: 11 VRRVKFFGQHGGE-----------VNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRL 59
Query: 671 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
GH P++ FSPD L +AS D ++++DV A L GH V V+F PD
Sbjct: 60 GGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPD 116
Score = 68.2 bits (165), Expect = 1e-11
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 382
+S + +G D V +W + ++ L GH+ + S D S T+ A+ S D+ + +
Sbjct: 116 DSRQLASGGWDKRVMLWDVQSGQM--LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHI 173
Query: 383 WDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 553
WDL ++++ + L +S S LA+G+ ++I+ + L
Sbjct: 174 WDLRMVTPAVSHQALEGHSANISCLCYSA-SGLLASGSWDKTIHIWKPTTSSLLIQLKGH 232
Query: 554 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 733
++ SIA+SPD +LAS ++ ++D TGK L TL+G + F+PD ++LV+
Sbjct: 233 VTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVS 292
Query: 734 ASDD 745
+ D
Sbjct: 293 GAAD 296
>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
Length = 800
Score = 91.7 bits (226), Expect = 9e-19
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 4/229 (1%)
Frame = +2
Query: 167 IWSVA---WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWS-LEGHQLGVVSVDISH 334
+WSV + K+ + +++ DD+++ + DEK + L GH V S
Sbjct: 496 VWSVTPKKLRSVKQASDLSLIDKESDDVLE--RIMDEKTASELKILYGHSGPVYGASFSP 553
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
SSS D +RLW L+ + W FSP Y +G H ++
Sbjct: 554 DRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA 613
Query: 515 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 694
+ + + + P+ Y+A+G+ D + ++D+ G + GH PI
Sbjct: 614 TDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIH 673
Query: 695 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
SLTFSP+ + L T + DG + ++D+ H + G L GH V ++ F D
Sbjct: 674 SLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD 722
Score = 77.8 bits (190), Expect = 1e-14
Identities = 51/195 (26%), Positives = 92/195 (47%)
Frame = +2
Query: 182 WGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSS 361
+G + + +++ S D V++W + +GH V S S
Sbjct: 547 YGASFSPDRNYLLSSSEDGTVRLWSL--QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG 604
Query: 362 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 541
D RLW ++ + ++ D F P+S Y+ATG+ V ++ V +G
Sbjct: 605 HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRI 664
Query: 542 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 721
I S+ +SP+G++LA+GA DG + ++DI G ++ L+GH + SL FS D +
Sbjct: 665 FTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGE 724
Query: 722 LLVTASDDGYIKIYD 766
+L + S D ++++D
Sbjct: 725 ILASGSMDNTVRLWD 739
>ref|NP_060566.2| notchless protein homolog 1 isoform a [Homo sapiens].
Length = 485
Score = 89.7 bits (221), Expect = 3e-18
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Frame = +2
Query: 287 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 466
SLEGH V+SV S T AS S D +R WDL + ++++SPD
Sbjct: 109 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDG 168
Query: 467 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAY-----SPDGKYLASGAIDGII 628
+ LA+G G++ ++ +GK+ +L K+I +++ +P+ +Y+AS + DG +
Sbjct: 169 RKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSV 228
Query: 629 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 808
I+D G+ L GH + L + D LL +AS D IK++ L TL GH
Sbjct: 229 RIWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHG 287
Query: 809 SWVLNVAFCPD 841
WV +A D
Sbjct: 288 HWVNTMALSTD 298
Score = 89.4 bits (220), Expect = 5e-18
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 1/230 (0%)
Frame = +2
Query: 155 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISH 334
H ++ + WG + + S D +KVW+ D L GH + +++ +
Sbjct: 245 HTQSVTCLRWG-----GDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDY 299
Query: 335 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 514
L A +A + DL+ Q + + + L + L +G+ + ++
Sbjct: 300 ALRTGAFEPAEASVNPQDLQGSLQ--ELKERALSRYNLVRGQGPERLVSGSDDFTLFLWS 357
Query: 515 VESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 691
KK + T + +++ + +SPD + +AS + D I ++D TGK L +L GH +
Sbjct: 358 PAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAV 417
Query: 692 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 841
+ +S DS+LLV+ S D +K++DV+ LA L GHA V V + PD
Sbjct: 418 YQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPD 467
Score = 69.7 bits (169), Expect = 4e-12
Identities = 43/146 (29%), Positives = 75/146 (51%)
Frame = +2
Query: 200 ENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 379
+ E +V+GS D + +W ++K L + GHQ + V S I AS+S D I+
Sbjct: 339 QGPERLVSGSDDFTLFLWSPAEDKKPLT-RMTGHQALINQVLFSPDSRIVASASFDKSIK 397
Query: 380 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 559
LWD GK + S+ + +A+S DS+ L +G+ + ++ V++ K L
Sbjct: 398 LWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHAD 457
Query: 560 FILSIAYSPDGKYLASGAIDGIINIF 637
+ ++ +SPDG+ +ASG D + I+
Sbjct: 458 EVYAVDWSPDGQRVASGGKDKCLRIW 483
Score = 63.5 bits (153), Expect = 3e-10
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 7/199 (3%)
Frame = +2
Query: 149 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDI 328
+ H +A+ SVA+ K + +GS D V+ W E ++ +GH+ V+S+
Sbjct: 111 EGHSEAVISVAFSPTGKY----LASGSGDTTVRFWDLSTETP--HFTCKGHRHWVLSISW 164
Query: 329 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------PDSQYLATGT 487
S AS + I LWD GKQ+ AG W S P+ +Y+A+ +
Sbjct: 165 SPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGH-SKWITGLSWEPLHANPECRYVASSS 223
Query: 488 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 667
G V I+ +G+ E L + + + + DG L S + D I ++ G L T
Sbjct: 224 KDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 282
Query: 668 LEGHAMPIRSLTFSPDSQL 724
L+GH + ++ S D L
Sbjct: 283 LQGHGHWVNTMALSTDYAL 301
>ref|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Homo sapiens].
Length = 522
Score = 86.7 bits (213), Expect = 3e-17
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 8/225 (3%)
Frame = +2
Query: 203 NSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIA--------ASS 358
NS+ + T L K+W D +L +L GH V ++ ++ AS
Sbjct: 242 NSKMLATACWSGLCKLWSVPD--CNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASC 299
Query: 359 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 538
+ D ++LW L++ + + I+ V + + P ++L T + ++ +E+ ++
Sbjct: 300 AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL 359
Query: 539 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 718
+ + IA+ DG +G +D ++D+ TG+ + LEGH I + FSP+
Sbjct: 360 HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG 419
Query: 719 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 853
+ T S D K++D++ T+ H + V V F P +F
Sbjct: 420 YHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNF 464
Score = 66.6 bits (161), Expect = 3e-11
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Frame = +2
Query: 443 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 622
T++ P LA+ G V ++ ++S + ++ + + + P G++L + D
Sbjct: 286 TVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDR 345
Query: 623 IINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 799
++D+ A ++LH EGH+M + + F D L T D + +++D++ L
Sbjct: 346 SWRLWDLEAQEEILHQ-EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 404
Query: 800 GHASWVLNVAFCPDDTHFXXXXXXXXXXXXXXGTRTCVHTFFDHQDQVWGVKY 958
GH + + F P+ H R CV+T HQ+ V GVK+
Sbjct: 405 GHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKF 457
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,191,142
Number of extensions: 1223996
Number of successful extensions: 6343
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 5587
Number of HSP's successfully gapped: 398
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008329
(959 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 345 3e-92
>Sscrofa_Chr07
|| Length = 134764511
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 258 ggcgtgatgagaagctggatctacagtggagcctggagggccatcagctgggtgtggtgt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53201213 ggcgtgatgagaagctggatctacagtggagcctggagggccatcagctgggtgtggtgt 53201272
Query: 318 ctgtggacataagccacaccctgcccattgctgcatccagttctcttgatgctcatattc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53201273 ctgtggacataagccacaccctgcccattgctgcatccagttctcttgatgctcatattc 53201332
Query: 378 gtctctgggacttggaaaacggcaaacagataaagtctatagatgcaggacctg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53201333 gtctctgggacttggaaaacggcaaacagataaagtctatagatgcaggacctg 53201386
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 431 gtggatgcctggactttggccttttctcctgattcccagtatctggccacaggaactcat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53206136 gtggatgcctggactttggccttttctcctgattcccagtatctggccacaggaactcat 53206195
Query: 491 gtggggaaagtgaacatttttggtgttgaaagtgggaaaaaggaatattctttggacaca 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53206196 gtggggaaagtgaacatttttggtgttgaaagtgggaaaaaggaatattctttggacaca 53206255
Query: 551 agaggaaaattcattcttagtattgcatat 580
||||||||||||||||||||||||||||||
Sbjct: 53206256 agaggaaaattcattcttagtattgcatat 53206285
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 151 agcccatgatgatgccatttggtcagttgcctgggggacaaacaagaaagaaaactcaga 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53200735 agcccatgatgatgccatttggtcagttgcctgggggacaaacaagaaagaaaactcaga 53200794
Query: 211 gacagtggtcacaggatccctggatgacctggtgaaggtctggaaatgg 259
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53200795 gacagtggtcacaggatccctggatgacctggtgaaggtctggaaatgg 53200843
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 673 aggccatgctatgcccattcgctccttgactttttccccggattcgcagctccttgtcac 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53207441 aggccatgctatgcccattcgctccttgactttttccccggattcgcagctccttgtcac 53207500
Query: 733 tgcttcagatgatggctacatcaagatctatgacgt 768
||||||||||||||||||||||||||||||||||||
Sbjct: 53207501 tgcttcagatgatggctacatcaagatctatgacgt 53207536
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 581 agtcctgatgggaagtatctggccagtggcgctatagacggaatcatcaatatttttgat 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53206508 agtcctgatgggaagtatctggccagtggcgctatagacggaatcatcaatatttttgat 53206567
Query: 641 attgcaactggaaaacttcttcatacgctggaagg 675
|||||||||||||||||||||||||||||||||||
Sbjct: 53206568 attgcaactggaaaacttcttcatacgctggaagg 53206602
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 769 acaacatgccaacttggctggcacactgagtggccatgcatcctgggtgttgaatgttgc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53209548 acaacatgccaacttggctggcacactgagtggccatgcatcctgggtgttgaatgttgc 53209607
Query: 829 attttgtccagatgacacacactttgtttccag 861
|||||||||||||||||||||||||||||||||
Sbjct: 53209608 attttgtccagatgacacacactttgtttccag 53209640
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 860 agttcatctgacaaaagtgtaaaagtttgggatgttggaacgaggacatgtgttcacacc 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53210473 agttcatctgacaaaagtgtaaaagtttgggatgttggaacgaggacatgtgttcacacc 53210532
Query: 920 ttctttgatcaccaggatcaggt 942
|||||||||||||||||||||||
Sbjct: 53210533 ttctttgatcaccaggatcaggt 53210555
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 3 attgccgcgcgccgaggtcgcgcggagccggtcctcggaagagctgaggggctgtgcagc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53195103 attgccgcgcgccgaggtcgcgcggagccggtcctcggaagagctgaggggctgtgcagc 53195162
Query: 63 cgggcagtgag 73
|||||||||||
Sbjct: 53195163 cgggcagtgag 53195173
Score = 81.8 bits (41), Expect = 6e-13
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 72 agagctgtctggccttaagcccttcatccttggggaaggaaatgactaaccag 124
|||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 53198282 agagctgtctggccttaagcccttcatccttgggaaagg-aatgactaaccag 53198333
Score = 61.9 bits (31), Expect = 6e-07
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 122 cagtacagtattctcttcaaacaagagcaag 152
|||||||||||||||||||||||||||||||
Sbjct: 53199038 cagtacagtattctcttcaaacaagagcaag 53199068
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,702,585
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 10
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)