Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008330
(990 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976239.1| proteolipid protein 2 [Bos taurus]. 254 6e-68
Alignment gi|NP_001070489.1| hypothetical protein LOC767950 [Bos taurus]. 146 3e-35
Alignment gi|XP_002703049.1| PREDICTED: proteolipid protein 2 [Bos taurus]. 146 3e-35
Alignment gi|NP_001068902.1| CKLF-like MARVEL transmembrane domain-contai... 56 6e-08
Alignment gi|NP_001092869.1| CKLF-like MARVEL transmembrane domain-contai... 49 7e-06
>ref|NP_976239.1| proteolipid protein 2 [Bos taurus].
Length = 152
Score = 254 bits (650), Expect = 6e-68
Identities = 122/152 (80%), Positives = 134/152 (88%)
Frame = +2
Query: 167 MADSERLSAPGCWAACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFA 346
MADSERL+APGCWAACT+FSRTRKGF+L AEI++CLVILICFS +TSG+SFLSVIEMIFA
Sbjct: 1 MADSERLTAPGCWAACTSFSRTRKGFLLFAEIILCLVILICFSTSTSGYSFLSVIEMIFA 60
Query: 347 AVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIXXXXXXXX 526
A+FFV+YMCDLHTKIQIINWPWSDFFRTL+AAILYLITSI+VLVE G+ SKI
Sbjct: 61 AIFFVVYMCDLHTKIQIINWPWSDFFRTLVAAILYLITSIVVLVERGNGSKIAAGALGLC 120
Query: 527 XXXXXXYDAYITFPLRQQRHTAAPTDPADGPV 622
YDAYITFPLRQQRHTAAPTDPADGPV
Sbjct: 121 AAGLFGYDAYITFPLRQQRHTAAPTDPADGPV 152
>ref|NP_001070489.1| hypothetical protein LOC767950 [Bos taurus].
Length = 130
Score = 146 bits (368), Expect = 3e-35
Identities = 70/124 (56%), Positives = 91/124 (73%)
Frame = +2
Query: 206 AACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLHT 385
++CT F T+KG +L AEI++CLVIL + +TSG+ LS+IE+I A +FF+IY CDLHT
Sbjct: 7 SSCTTFLCTQKGMLLFAEIILCLVILTLYGVSTSGYISLSLIELILAIIFFIIYTCDLHT 66
Query: 386 KIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIXXXXXXXXXXXXXXYDAYITF 565
KIQ I+WPW+DFFR+LIAAI+YLITSI+VLVE G+ S+I YDA IT
Sbjct: 67 KIQFIHWPWTDFFRSLIAAIIYLITSIIVLVERGYRSRIVAGVLGLIATALFGYDASITC 126
Query: 566 PLRQ 577
P+RQ
Sbjct: 127 PMRQ 130
>ref|XP_002703049.1| PREDICTED: proteolipid protein 2 [Bos taurus].
Length = 130
Score = 146 bits (368), Expect = 3e-35
Identities = 70/124 (56%), Positives = 91/124 (73%)
Frame = +2
Query: 206 AACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLHT 385
++CT F T+KG +L AEI++CLVIL + +TSG+ LS+IE+I A +FF+IY CDLHT
Sbjct: 7 SSCTTFLCTQKGMLLFAEIILCLVILTLYGVSTSGYISLSLIELILAIIFFIIYTCDLHT 66
Query: 386 KIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIXXXXXXXXXXXXXXYDAYITF 565
KIQ I+WPW+DFFR+LIAAI+YLITSI+VLVE G+ S+I YDA IT
Sbjct: 67 KIQFIHWPWTDFFRSLIAAIIYLITSIIVLVERGYRSRIVAGVLGLIATALFGYDASITC 126
Query: 566 PLRQ 577
P+RQ
Sbjct: 127 PMRQ 130
>ref|NP_001068902.1| CKLF-like MARVEL transmembrane domain-containing protein 5 [Bos
taurus].
Length = 156
Score = 55.8 bits (133), Expect = 6e-08
Identities = 25/87 (28%), Positives = 44/87 (50%)
Frame = +2
Query: 203 WAACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLH 382
+A F + KG +L E+ + +I ICF A+ S + +++E F +Y +
Sbjct: 23 FAVDKTFLSSLKGILLETELALTFIIFICFMASISAYMAAALLEFFITLAFLFLYATQYY 82
Query: 383 TKIQIINWPWSDFFRTLIAAILYLITS 463
+ +NWP DF R + A I++L+ S
Sbjct: 83 ERFDRMNWPCLDFLRCVSAIIIFLVVS 109
>ref|NP_001092869.1| CKLF-like MARVEL transmembrane domain-containing protein 3 [Bos
taurus].
Length = 182
Score = 48.9 bits (115), Expect = 7e-06
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 236 KGFVLLAEIVVCLVILICFSAAT-SGFSFLSVIEMIFAAVFFVIYMCDLHTKIQIINWPW 412
KG +LLAE + +I +C+ A++ S F ++E + A F L+ K Q + WP
Sbjct: 41 KGRLLLAETGLSFIIFVCYVASSASAFLTAPLLEFLLALCFLFADAMQLNDKWQGLCWPM 100
Query: 413 SDFFRTLIAAILYLITSILVLVE 481
DF R + AA++Y SI + +
Sbjct: 101 MDFLRCVTAALIYFAISITAVAK 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,737,636
Number of extensions: 1207437
Number of successful extensions: 3818
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3811
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008330
(990 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538034.2| PREDICTED: similar to Proteolipid protein 2 (In... 192 3e-49
Alignment gi|XP_537305.2| PREDICTED: similar to Rho-associated protein ki... 155 6e-38
Alignment gi|XP_850232.1| PREDICTED: similar to chemokine-like factor sup... 56 5e-08
Alignment gi|XP_854118.1| PREDICTED: similar to chemokine-like factor sup... 51 2e-06
Alignment gi|XP_852137.1| PREDICTED: similar to chemokine-like factor sup... 49 7e-06
>ref|XP_538034.2| PREDICTED: similar to Proteolipid protein 2 (Intestinal membrane A4
protein) (Differentiation-dependent protein A4)
(Proteolipid protein 2) [Canis familiaris].
Length = 133
Score = 192 bits (489), Expect = 3e-49
Identities = 94/120 (78%), Positives = 102/120 (85%)
Frame = +2
Query: 263 VVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLHTKIQIINWPWSDFFRTLIAA 442
++CLVILICFSA+T G+S LSV+EMI AA+FFVIYMCDLHTKIQIINWPWSDFFRTLIAA
Sbjct: 14 ILCLVILICFSASTPGYSSLSVVEMILAAIFFVIYMCDLHTKIQIINWPWSDFFRTLIAA 73
Query: 443 ILYLITSILVLVEGGHSSKIXXXXXXXXXXXXXXYDAYITFPLRQQRHTAAPTDPADGPV 622
ILYLITSI+VLVEGG+ SKI YDAYITFPLRQQRHTAAPTDPADGPV
Sbjct: 74 ILYLITSIVVLVEGGNHSKIIAGVLGLIATSLFGYDAYITFPLRQQRHTAAPTDPADGPV 133
>ref|XP_537305.2| PREDICTED: similar to Rho-associated protein kinase 1
(Rho-associated, coiled-coil containing protein kinase
1) (p160 ROCK-1) (p160ROCK) [Canis familiaris].
Length = 2025
Score = 155 bits (392), Expect = 6e-38
Identities = 84/149 (56%), Positives = 100/149 (67%)
Frame = +2
Query: 122 QASSSSAPFGTQVHAMADSERLSAPGCWAACTNFSRTRKGFVLLAEIVVCLVILICFSAA 301
QA S P GT M ++E LSA GCW TNF +RKG +L AE+++CLVILI FS +
Sbjct: 218 QACRSYVPPGTPGLIMVEAEHLSARGCWTVFTNFLCSRKGTLLCAEMILCLVILIWFSLS 277
Query: 302 TSGFSFLSVIEMIFAAVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVE 481
T +S LSV+EMI A +FFVIYMCDL +KIQ W W DFFRTLIAA LYLITSI+VLVE
Sbjct: 278 TPAYSSLSVVEMILAEIFFVIYMCDLASKIQY--WSWIDFFRTLIAATLYLITSIVVLVE 335
Query: 482 GGHSSKIXXXXXXXXXXXXXXYDAYITFP 568
GG+ S I YDA+IT+P
Sbjct: 336 GGNRSIIIAGVLGLIAVFLFGYDAFITYP 364
>ref|XP_850232.1| PREDICTED: similar to chemokine-like factor superfamily 5 isoform a
[Canis familiaris].
Length = 156
Score = 56.2 bits (134), Expect = 5e-08
Identities = 25/87 (28%), Positives = 44/87 (50%)
Frame = +2
Query: 203 WAACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLH 382
+A F + KG +L E+ + +I ICF+A+ S + +++E F +Y +
Sbjct: 23 FAVDKTFLSSLKGILLETELALTFIIFICFTASISAYMAAALLEFFITLAFLFLYATQYY 82
Query: 383 TKIQIINWPWSDFFRTLIAAILYLITS 463
+NWP DF R + A I++L+ S
Sbjct: 83 QHFDRLNWPCLDFLRCISAIIIFLVVS 109
>ref|XP_854118.1| PREDICTED: similar to chemokine-like factor superfamily 1 isoform
13 [Canis familiaris].
Length = 417
Score = 50.8 bits (120), Expect = 2e-06
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +2
Query: 236 KGFVLLAEIVVCLVILICF--SAATSGFSFLSVIEMIFAAVFFVIYMCDLHTKIQIINWP 409
KG + + + + L LICF + A + ++V+EM F +IYM LH + ++WP
Sbjct: 137 KGILKILRLGLILGALICFIIAKAYEPYIAITVLEMCIVLFFILIYMLTLHHLLVFLDWP 196
Query: 410 WSDFFRTLIAAILYLITSILVLVE 481
D ++I A+ LI +IL + E
Sbjct: 197 LLDLINSIITAMFLLIVAILAMQE 220
>ref|XP_852137.1| PREDICTED: similar to chemokine-like factor superfamily 7 isoform a
[Canis familiaris].
Length = 303
Score = 48.9 bits (115), Expect = 7e-06
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +2
Query: 221 FSRTRKGFVLLAEIVVCLVILICF------SAATSGFSFLSVIEMIFAAVFFVIYMCDLH 382
+ RT + +A+++ L+ IC S A S F +++ +I VF+++++ L+
Sbjct: 60 YPRTSSALLKVAQMITLLIAFICVNRSMWTSYAYSYFEVVTICNLIMILVFYLVHLFRLY 119
Query: 383 TKIQIINWPWSDFFRTLIAAILYLITSIL 469
+ I+WP S+ LI +L LI SI+
Sbjct: 120 RMLTCISWPLSELLHYLIGTLLLLIASIV 148
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,464,288
Number of extensions: 1246793
Number of successful extensions: 3941
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3933
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008330
(990 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135129.2| PREDICTED: proteolipid protein 2-like [Sus s... 274 5e-74
Alignment gi|XP_003128582.1| PREDICTED: CKLF-like MARVEL transmembrane do... 59 3e-09
>ref|XP_003135129.2| PREDICTED: proteolipid protein 2-like [Sus scrofa].
Length = 152
Score = 274 bits (701), Expect = 5e-74
Identities = 137/152 (90%), Positives = 138/152 (90%)
Frame = +2
Query: 167 MADSERLSAPGCWAACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFA 346
MADSERLSAPGCWAACTNFSRTRKGFVLLAEIV+CLVILICFSAATSGFSFLSVIEMIFA
Sbjct: 1 MADSERLSAPGCWAACTNFSRTRKGFVLLAEIVMCLVILICFSAATSGFSFLSVIEMIFA 60
Query: 347 AVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIXXXXXXXX 526
AVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKI
Sbjct: 61 AVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIAAGVLGLL 120
Query: 527 XXXXXXYDAYITFPLRQQRHTAAPTDPADGPV 622
YDAYITFPLRQQRHTAAPTDPADGPV
Sbjct: 121 AACLFGYDAYITFPLRQQRHTAAPTDPADGPV 152
>ref|XP_003128582.1| PREDICTED: CKLF-like MARVEL transmembrane domain-containing protein
5-like [Sus scrofa].
Length = 156
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +2
Query: 179 ERLSAPGC--WAACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAV 352
E ++A G +A F + KG +L E+V+ +I ICF+A+ S + +++E
Sbjct: 13 EEVAAAGLQGFAVDKTFLSSLKGILLETELVLTFIIFICFTASISAYMAAALLEFFITLA 72
Query: 353 FFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITS 463
F +Y + + +NWP DF R + A I++L+ S
Sbjct: 73 FLFLYATQYYQRFDRLNWPCLDFLRCVSAIIIFLVVS 109
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,320,039
Number of extensions: 782086
Number of successful extensions: 2577
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2577
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008330
(990 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062729.1| proteolipid protein 2 [Mus musculus]. 217 1e-56
Alignment gi|NP_080342.1| CKLF-like MARVEL transmembrane domain-containin... 55 1e-07
>ref|NP_062729.1| proteolipid protein 2 [Mus musculus].
Length = 152
Score = 217 bits (552), Expect = 1e-56
Identities = 107/152 (70%), Positives = 121/152 (79%), Gaps = 1/152 (0%)
Frame = +2
Query: 167 MADSERLSAPGCWAACTNFSRTRKGFVLLAEIVVCLVILICFSAAT-SGFSFLSVIEMIF 343
MADSERLSAPGCW ACT+FSRT+KG +L AEI++CLVILICFSA+T S +S LSVIEMI
Sbjct: 1 MADSERLSAPGCWLACTSFSRTKKGILLFAEIILCLVILICFSASTTSAYSSLSVIEMIC 60
Query: 344 AAVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIXXXXXXX 523
AAV V Y CDLH+KI INWPW+DFFR+LIA ILYLITSI+VLVEG SS++
Sbjct: 61 AAVLLVFYTCDLHSKISFINWPWTDFFRSLIATILYLITSIVVLVEGRGSSRVVAGILGL 120
Query: 524 XXXXXXXYDAYITFPLRQQRHTAAPTDPADGP 619
YDAYITFPL+QQRHTAAPTDP DGP
Sbjct: 121 LATLLFGYDAYITFPLKQQRHTAAPTDPTDGP 152
>ref|NP_080342.1| CKLF-like MARVEL transmembrane domain-containing protein 5 [Mus
musculus].
Length = 156
Score = 54.7 bits (130), Expect = 1e-07
Identities = 23/81 (28%), Positives = 43/81 (53%)
Frame = +2
Query: 221 FSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLHTKIQII 400
F + KG +L E+ + +I ICF+A+ S + +++E + F + + + +
Sbjct: 29 FLSSLKGILLETELALTFIIFICFTASISAYMAAALLEFLITLAFLFLCATQYYQRFDRL 88
Query: 401 NWPWSDFFRTLIAAILYLITS 463
NWP DF R L A +++L+ S
Sbjct: 89 NWPCLDFLRCLSAIVIFLVVS 109
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,986,889
Number of extensions: 1007871
Number of successful extensions: 3056
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008330
(990 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002659.1| proteolipid protein 2 [Homo sapiens]. 242 4e-64
Alignment gi|NP_612469.1| CKLF-like MARVEL transmembrane domain-containin... 60 4e-09
Alignment gi|NP_001032365.1| CKLF-like MARVEL transmembrane domain-contai... 49 9e-06
>ref|NP_002659.1| proteolipid protein 2 [Homo sapiens].
Length = 152
Score = 242 bits (617), Expect = 4e-64
Identities = 117/152 (76%), Positives = 128/152 (84%)
Frame = +2
Query: 167 MADSERLSAPGCWAACTNFSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFA 346
MADSERLSAPGCWAACTNFSRTRKG +L AEI++CLVILICFSA+T G+S LSVIEMI A
Sbjct: 1 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVIEMILA 60
Query: 347 AVFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSILVLVEGGHSSKIXXXXXXXX 526
A+FFV+YMCDLHTKI INWPWSDFFRTLIAAILYLITSI+VLVE G+ SKI
Sbjct: 61 AIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLI 120
Query: 527 XXXXXXYDAYITFPLRQQRHTAAPTDPADGPV 622
YDAY+TFP+RQ RHTAAPTDPADGPV
Sbjct: 121 ATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV 152
>ref|NP_612469.1| CKLF-like MARVEL transmembrane domain-containing protein 5 isoform
a [Homo sapiens].
Length = 156
Score = 59.7 bits (143), Expect = 4e-09
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +2
Query: 221 FSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLHTKIQII 400
F + KG +L E+ + L+I ICF+A+ S + +++E F +Y + + I
Sbjct: 29 FLTSHKGILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFDRI 88
Query: 401 NWPWSDFFRTLIAAILYLITS 463
NWP DF R + A I++L+ S
Sbjct: 89 NWPCLDFLRCVSAIIIFLVVS 109
>ref|NP_001032365.1| CKLF-like MARVEL transmembrane domain-containing protein 5 isoform
c [Homo sapiens].
Length = 125
Score = 48.5 bits (114), Expect = 9e-06
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +2
Query: 221 FSRTRKGFVLLAEIVVCLVILICFSAATSGFSFLSVIEMIFAAVFFVIYMCDLHTKIQII 400
F + KG +L E+ + L+I ICF+A+ S + +++E F +Y + + I
Sbjct: 29 FLTSHKGILLETELALTLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFDRI 88
Query: 401 NWPWSDFFRTLIAAILY 451
NWP F L++ Y
Sbjct: 89 NWPCLVFGIILVSIFAY 105
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,479,083
Number of extensions: 1210727
Number of successful extensions: 3658
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3650
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008330
(990 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 763 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 763 bits (385), Expect = 0.0
Identities = 388/389 (99%)
Strand = Plus / Plus
Query: 602 gaccctgcagatggccccgtgtaggtgaactcccttcgcgtgtctcagcaacctgcaaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48065860 gaccctgcagatggccccgtgtaggtgaactcccttcgcgtgtctcagcaacctgcaaat 48065919
Query: 662 aacacctccatcgcaataactccttcccgcccctactgaaagtgcctttaccgggagacc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48065920 aacacctccatcgcaataactccttcccgcccctactgaaagtgcctttaccgggagacc 48065979
Query: 722 atgccttccagcctgccaatcaaccctcctgggcgtggccacccttatgggtccgcctag 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48065980 atgccttccagcctgccaatcaaccctcctgggcgtggccacccttatgggtccgcctag 48066039
Query: 782 gtccaccttccttctgcagtatccagagacgctagttctgcctggacaatgcccccacct 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066040 gtccaccttccttctgcagtatccagagacgctagttctgcctggacaatgcccccacct 48066099
Query: 842 aaagccacagatttcagactccaggccccaggttgtgaccctctccaaataaccttttct 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066100 aaagccacagatttcagactccaggccccaggttgtgaccctctccaaataaccttttct 48066159
Query: 902 gtgtgtgttgggtgggaggggttccatggaggaataaatacataataaccagattgttaa 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066160 gtgtgtgttgggtgggaggggttccatggaggaataaatacataataaccagattgttag 48066219
Query: 962 aacatatgagaatgaataaattaagcctt 990
|||||||||||||||||||||||||||||
Sbjct: 48066220 aacatatgagaatgaataaattaagcctt 48066248
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 1 gctccggccccgcccgcttctgctccgcgcggtgattcactccctccttcgccccggggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48063314 gctccggccccgcccgcttctgctccgcgcggtgattcactccctccttcgccccggggc 48063373
Query: 61 ccccttcccggccagacggcggggaagacggttgggtgtgcagcgtcctcgaacccgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48063374 ccccttcccggccagacggcggggaagacggttgggtgtgcagcgtcctcgaacccgcaa 48063433
Query: 121 gcaagcgagcagctcctcggcgcccttcgggactcaggtccacgccatggcggattccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48063434 gcaagcgagcagctcctcggcgcccttcgggactcaggtccacgccatggcggattccga 48063493
Query: 181 gcgcctctcggccccgggctgctgggccgcctgcaccaacttctcgcgcacccgaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48063494 gcgcctctcggccccgggctgctgggccgcctgcaccaacttctcgcgcacccgaaaggg 48063553
Query: 241 atttgtcctgttggctgagattgta 265
|||||||||||||||||||||||||
Sbjct: 48063554 atttgtcctgttggctgagattgta 48063578
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 263 gtagtgtgcctggtgattctgatctgcttcagtgccgcgacgtcaggattctctttcctg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48064665 gtagtgtgcctggtgattctgatctgcttcagtgccgcgacgtcaggattctctttcctg 48064724
Query: 323 tcggtgatagagatgatctttgctgctgtcttctttgtcatctacatgtgtgacctgcac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48064725 tcggtgatagagatgatctttgctgctgtcttctttgtcatctacatgtgtgacctgcac 48064784
Query: 383 accaagatacaaatcatcaactggccttggagtg 416
||||||||||||||||||||||||||||||||||
Sbjct: 48064785 accaagatacaaatcatcaactggccttggagtg 48064818
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 416 gatttcttccgaaccctcatagcagccatcctctacctgatcacctccatccttgtgctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48064912 gatttcttccgaaccctcatagcagccatcctctacctgatcacctccatccttgtgctc 48064971
Query: 476 gtggagggaggacacagctccaaaattgccgcaggggta 514
|||||||||||||||||||||||||||||||||||||||
Sbjct: 48064972 gtggagggaggacacagctccaaaattgccgcaggggta 48065010
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 511 ggtactgggcctactggctgcatgcttgtttggctacgatgcctacattactttcccctt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48065544 ggtactgggcctactggctgcatgcttgtttggctacgatgcctacattactttcccctt 48065603
Query: 571 gaggcagcaaagacatacagcagcccctactg 602
||||||||||||||||||||||||||||||||
Sbjct: 48065604 gaggcagcaaagacatacagcagcccctactg 48065635
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,355,619
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 5
Length of query: 990
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 969
Effective length of database: 2,808,413,156
Effective search space: 2721352348164
Effective search space used: 2721352348164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)