Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008331
(2371 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692406.1| PREDICTED: hypothetical protein [Bos taurus]. 561 e-161
Alignment gi|XP_593742.3| PREDICTED: hypothetical protein [Bos taurus]. 561 e-161
Alignment gi|XP_002694962.1| PREDICTED: hypothetical protein [Bos taurus]. 286 4e-77
Alignment gi|XP_592300.3| PREDICTED: zinc finger protein 537 [Bos taurus]. 286 4e-77
Alignment gi|XP_002697703.1| PREDICTED: SDCCAG33 variant protein-like [Bo... 249 8e-66
Alignment gi|XP_594245.4| PREDICTED: teashirt family zinc finger 1 [Bos t... 249 8e-66
>ref|XP_002692406.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1107
Score = 561 bits (1445), Expect(2) = e-161
Identities = 280/326 (85%), Positives = 283/326 (86%)
Frame = +3
Query: 1353 PKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAEQKGCFSYQ 1532
P AGYA SGS AQ QGSND GTDEELETG EQKGCFSYQ
Sbjct: 81 PLSTAGYAQEEQLKEEEEIKEEEEEEEDSGSGAQPQGSNDAGTDEELETGPEQKGCFSYQ 140
Query: 1533 NSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAHSCMDKMTA 1712
NSPGSHLSNQDAENESLLSDASDQVSDIKSVC RDASDKKASVHPKLP EAHSCMDKMTA
Sbjct: 141 NSPGSHLSNQDAENESLLSDASDQVSDIKSVCGRDASDKKASVHPKLPNEAHSCMDKMTA 200
Query: 1713 VYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQNLPPRSVS 1892
VYANILSDSYW ERR+CDTRNG +KTDFDWHQDALSKSLQQNLP RSVS
Sbjct: 201 VYANILSDSYWSGLGLGFKLSNSERRNCDTRNGGNKTDFDWHQDALSKSLQQNLPSRSVS 260
Query: 1893 KPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKK 2072
KPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKK
Sbjct: 261 KPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKK 320
Query: 2073 DKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKE 2252
DKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKE
Sbjct: 321 DKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKE 380
Query: 2253 PVPTISSKMVTPAKKRVFDVHRPCSP 2330
PVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 381 PVPTISSKMVTPAKKRVFDVNRPCSP 406
Score = 26.9 bits (58), Expect(2) = e-161
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 2329 PDSTTGSFADPF 2364
PDSTTGSFAD F
Sbjct: 406 PDSTTGSFADSF 417
>ref|XP_593742.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 1107
Score = 561 bits (1445), Expect(2) = e-161
Identities = 280/326 (85%), Positives = 283/326 (86%)
Frame = +3
Query: 1353 PKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAEQKGCFSYQ 1532
P AGYA SGS AQ QGSND GTDEELETG EQKGCFSYQ
Sbjct: 81 PLSTAGYAQEEQLKEEEEIKEEEEEEEDSGSGAQPQGSNDAGTDEELETGPEQKGCFSYQ 140
Query: 1533 NSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAHSCMDKMTA 1712
NSPGSHLSNQDAENESLLSDASDQVSDIKSVC RDASDKKASVHPKLP EAHSCMDKMTA
Sbjct: 141 NSPGSHLSNQDAENESLLSDASDQVSDIKSVCGRDASDKKASVHPKLPNEAHSCMDKMTA 200
Query: 1713 VYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQNLPPRSVS 1892
VYANILSDSYW ERR+CDTRNG +KTDFDWHQDALSKSLQQNLP RSVS
Sbjct: 201 VYANILSDSYWSGLGLGFKLSNSERRNCDTRNGGNKTDFDWHQDALSKSLQQNLPSRSVS 260
Query: 1893 KPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKK 2072
KPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKK
Sbjct: 261 KPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKK 320
Query: 2073 DKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKE 2252
DKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKE
Sbjct: 321 DKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKE 380
Query: 2253 PVPTISSKMVTPAKKRVFDVHRPCSP 2330
PVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 381 PVPTISSKMVTPAKKRVFDVNRPCSP 406
Score = 26.9 bits (58), Expect(2) = e-161
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 2329 PDSTTGSFADPF 2364
PDSTTGSFAD F
Sbjct: 406 PDSTTGSFADSF 417
>ref|XP_002694962.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1098
Score = 286 bits (733), Expect = 4e-77
Identities = 144/281 (51%), Positives = 195/281 (69%), Gaps = 8/281 (2%)
Frame = +3
Query: 1512 KGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAHS 1691
K C SYQNSP + S+ + ++ES +S+ SD+++D +S ++ + K P T
Sbjct: 71 KTCPSYQNSPAAEFSSHEMDSESHISETSDRMADFESGSIKNEEETKEVTIPPEDTTVSD 130
Query: 1692 CMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD------FDWHQDALS 1853
+++M AVY N LS+SYW E+ + + + SS + FDWHQ A++
Sbjct: 131 SLEQMKAVYNNFLSNSYWSNLTLNLHQPSSEKNNGSSSSSSSSSSSCGSGSFDWHQSAMA 190
Query: 1854 KSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHM 2033
K+LQQ R + +PSLFS+VQLYRQSSK+ G++FTGAS+FRC+ CSAAYDTLVELTVHM
Sbjct: 191 KTLQQVSQSRMLPEPSLFSTVQLYRQSSKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 250
Query: 2034 NETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVH 2210
NETGHY+DDN + D P +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVH
Sbjct: 251 NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 310
Query: 2211 MIKTKHYQKVPLKEPVPTISSKMVTPAKKRV-FDVHRPCSP 2330
MIKTKHYQKVPLKEPV +++K++ A+K+ ++ P SP
Sbjct: 311 MIKTKHYQKVPLKEPVTPVAAKIIPAARKKASLELELPSSP 351
>ref|XP_592300.3| PREDICTED: zinc finger protein 537 [Bos taurus].
Length = 1087
Score = 286 bits (733), Expect = 4e-77
Identities = 144/281 (51%), Positives = 195/281 (69%), Gaps = 8/281 (2%)
Frame = +3
Query: 1512 KGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAHS 1691
K C SYQNSP + S+ + ++ES +S+ SD+++D +S ++ + K P T
Sbjct: 60 KTCPSYQNSPAAEFSSHEMDSESHISETSDRMADFESGSIKNEEETKEVTIPPEDTTVSD 119
Query: 1692 CMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD------FDWHQDALS 1853
+++M AVY N LS+SYW E+ + + + SS + FDWHQ A++
Sbjct: 120 SLEQMKAVYNNFLSNSYWSNLTLNLHQPSSEKNNGSSSSSSSSSSSCGSGSFDWHQSAMA 179
Query: 1854 KSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHM 2033
K+LQQ R + +PSLFS+VQLYRQSSK+ G++FTGAS+FRC+ CSAAYDTLVELTVHM
Sbjct: 180 KTLQQVSQSRMLPEPSLFSTVQLYRQSSKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 239
Query: 2034 NETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVH 2210
NETGHY+DDN + D P +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVH
Sbjct: 240 NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 299
Query: 2211 MIKTKHYQKVPLKEPVPTISSKMVTPAKKRV-FDVHRPCSP 2330
MIKTKHYQKVPLKEPV +++K++ A+K+ ++ P SP
Sbjct: 300 MIKTKHYQKVPLKEPVTPVAAKIIPAARKKASLELELPSSP 340
>ref|XP_002697703.1| PREDICTED: SDCCAG33 variant protein-like [Bos taurus].
Length = 1176
Score = 249 bits (636), Expect = 8e-66
Identities = 142/309 (45%), Positives = 184/309 (59%), Gaps = 33/309 (10%)
Frame = +3
Query: 1503 AEQKGCFSYQNSPGSHLSNQDAENESLLSDASD--QVSDIKSVCSRDASDKKASVHPKLP 1676
AE K SYQNSP S +NQDA S S+ SD Q + KS S++ +++
Sbjct: 150 AEIKEAQSYQNSPISTATNQDAGYGSPFSEHSDSDQPAHFKSSSSKEEKEERQGAEGV-- 207
Query: 1677 TEAHSCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD---------- 1826
+ + ++ AVYAN+ S+S W D T
Sbjct: 208 SYPQDSLAQIKAVYANLFSESCWSSLALDLKKSASTTSTSDAAQKEGSTPAPTPPTSTAG 267
Query: 1827 --------------------FDWHQDALSKSLQQNLPPRSVSKPSLFSSVQLYRQSSKMC 1946
+DWHQ AL+K+LQQ + +PSLFS+VQLYRQ++K+
Sbjct: 268 ATGTTASTPSSGSGASGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLY 327
Query: 1947 GTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQD 2126
G+VFTGAS+FRC+ CSAAYDTLVELTVHMNETGHY+DDNR KD + +SKPRKR+ +
Sbjct: 328 GSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLME 387
Query: 2127 MD-KEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRV 2303
M+ KEDAQKVLKCM+CG SF+SLQDLSVHMIKTKHYQKVPLKEPVP ++ + + K+ +
Sbjct: 388 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPALTKLVPSTKKRAL 447
Query: 2304 FDVHRPCSP 2330
++ P SP
Sbjct: 448 HELAAPGSP 456
>ref|XP_594245.4| PREDICTED: teashirt family zinc finger 1 [Bos taurus].
Length = 1176
Score = 249 bits (636), Expect = 8e-66
Identities = 142/309 (45%), Positives = 184/309 (59%), Gaps = 33/309 (10%)
Frame = +3
Query: 1503 AEQKGCFSYQNSPGSHLSNQDAENESLLSDASD--QVSDIKSVCSRDASDKKASVHPKLP 1676
AE K SYQNSP S +NQDA S S+ SD Q + KS S++ +++
Sbjct: 150 AEIKEAQSYQNSPISTATNQDAGYGSPFSEHSDSDQPAHFKSSSSKEEKEERQGAEGV-- 207
Query: 1677 TEAHSCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD---------- 1826
+ + ++ AVYAN+ S+S W D T
Sbjct: 208 SYPQDSLAQIKAVYANLFSESCWSSLALDLKKSASTTSTSDAAQKEGSTPAPTPPTSTAG 267
Query: 1827 --------------------FDWHQDALSKSLQQNLPPRSVSKPSLFSSVQLYRQSSKMC 1946
+DWHQ AL+K+LQQ + +PSLFS+VQLYRQ++K+
Sbjct: 268 ATGTTASTPSSGSGASGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLY 327
Query: 1947 GTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQD 2126
G+VFTGAS+FRC+ CSAAYDTLVELTVHMNETGHY+DDNR KD + +SKPRKR+ +
Sbjct: 328 GSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLME 387
Query: 2127 MD-KEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRV 2303
M+ KEDAQKVLKCM+CG SF+SLQDLSVHMIKTKHYQKVPLKEPVP ++ + + K+ +
Sbjct: 388 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPALTKLVPSTKKRAL 447
Query: 2304 FDVHRPCSP 2330
++ P SP
Sbjct: 448 HELAAPGSP 456
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,472,846
Number of extensions: 2429564
Number of successful extensions: 13807
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 12911
Number of HSP's successfully gapped: 8
Length of query: 790
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 680
Effective length of database: 14,041,694
Effective search space: 9548351920
Effective search space used: 9548351920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008331
(2371 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543057.2| PREDICTED: similar to serologically defined col... 558 e-160
Alignment gi|XP_541721.2| PREDICTED: similar to teashirt 3 [Canis familia... 286 6e-77
Alignment gi|XP_533368.2| PREDICTED: similar to serologically defined col... 259 6e-69
>ref|XP_543057.2| PREDICTED: similar to serologically defined colon cancer antigen 33
like [Canis familiaris].
Length = 1155
Score = 558 bits (1437), Expect(2) = e-160
Identities = 271/298 (90%), Positives = 277/298 (92%)
Frame = +3
Query: 1437 SGSVAQLQGSNDPGTDEELETGAEQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDI 1616
SGSVAQLQGSNDPGTDEELETG EQKGCFSYQNSPGSHLSNQD ENESLLSDASDQVSD+
Sbjct: 157 SGSVAQLQGSNDPGTDEELETGPEQKGCFSYQNSPGSHLSNQDVENESLLSDASDQVSDV 216
Query: 1617 KSVCSRDASDKKASVHPKLPTEAHSCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHC 1796
KS+C RD SDKKAS HPKLP E+H+CMDKMTAVYANILSDSYW ERR+C
Sbjct: 217 KSICGRDVSDKKASAHPKLPGESHNCMDKMTAVYANILSDSYWSGLGLGFKLSSSERRNC 276
Query: 1797 DTRNGSSKTDFDWHQDALSKSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRF 1976
D RNGSSKTDFDWHQDALSKSLQQNLP RSV KPSLFSSVQLYRQSSKMCGTVFTGASRF
Sbjct: 277 DPRNGSSKTDFDWHQDALSKSLQQNLPSRSVGKPSLFSSVQLYRQSSKMCGTVFTGASRF 336
Query: 1977 RCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVL 2156
RCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVL
Sbjct: 337 RCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVL 396
Query: 2157 KCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
KCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 397 KCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSP 454
Score = 28.9 bits (63), Expect(2) = e-160
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 2329 PDSTTGSFADPFSA 2370
PDSTTGSFAD FS+
Sbjct: 454 PDSTTGSFADSFSS 467
>ref|XP_541721.2| PREDICTED: similar to teashirt 3 [Canis familiaris].
Length = 1137
Score = 286 bits (732), Expect = 6e-77
Identities = 142/281 (50%), Positives = 196/281 (69%), Gaps = 8/281 (2%)
Frame = +3
Query: 1512 KGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAHS 1691
K C SYQNSP + S+ + ++ES +S+ SD+++D +S ++ + K + P T
Sbjct: 110 KACPSYQNSPAAEFSSHEMDSESHISETSDRMADFESGSIKNEEEAKEAAAPLEDTTVSD 169
Query: 1692 CMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD------FDWHQDALS 1853
+++M AVY N LS+SYW ++ + + + SS + FDWHQ A++
Sbjct: 170 SLEQMKAVYNNFLSNSYWSNLHLNLHQPSSDKNNGSSSSSSSSSSSCGSGSFDWHQSAMA 229
Query: 1854 KSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHM 2033
K+LQ R++ +PSLFS+VQLYRQSSK+ G++FTGAS+FRC+ CSAAYDTLVELTVHM
Sbjct: 230 KTLQHVSQSRALPEPSLFSTVQLYRQSSKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 289
Query: 2034 NETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVH 2210
NETGHY+DDN + D P +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVH
Sbjct: 290 NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 349
Query: 2211 MIKTKHYQKVPLKEPVPTISSKMVTPAKKRV-FDVHRPCSP 2330
MIKTKHYQKVPLKEPV +++K++ A+K+ ++ P SP
Sbjct: 350 MIKTKHYQKVPLKEPVTPVAAKIIPAARKKASLELELPSSP 390
>ref|XP_533368.2| PREDICTED: similar to serologically defined colon cancer antigen 33
[Canis familiaris].
Length = 1083
Score = 259 bits (663), Expect = 6e-69
Identities = 148/314 (47%), Positives = 190/314 (60%), Gaps = 38/314 (12%)
Frame = +3
Query: 1503 AEQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDK-KASVHPKLPT 1679
AE K SYQNSP S +NQDA S S+ SDQ+ KS SR+ ++ +A+ P
Sbjct: 60 AEIKEAQSYQNSPVSTATNQDAGYGSPFSENSDQLVHFKSSSSREEKEEPQAADSVSYPQ 119
Query: 1680 EAHSCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTR------------------ 1805
++ + ++ AVYAN+ S+S W D
Sbjct: 120 DS---LAQIKAVYANLFSESCWSSLALDLKKSGSATSTNDVGPKESTTPAPTPPTSTAGT 176
Query: 1806 ------------------NGSSKTDFDWHQDALSKSLQQNLPPRSVSKPSLFSSVQLYRQ 1931
G + +DWHQ AL+K+LQQ + +PSLFS+VQLYRQ
Sbjct: 177 SGTTASTPSSGSGSGSGGGGGGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQ 236
Query: 1932 SSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRK 2111
++K+ G+VFTGAS+FRC+ CSAAYDTLVELTVHMNETGHY+DDNR KD + +SKPRK
Sbjct: 237 NNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRK 296
Query: 2112 RAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTP 2288
R+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVHMIKTKHYQKVPLKEPVP I+ + +
Sbjct: 297 RSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPST 356
Query: 2289 AKKRVFDVHRPCSP 2330
K+ + D+ PCSP
Sbjct: 357 KKRALQDLASPCSP 370
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,980,978
Number of extensions: 2138474
Number of successful extensions: 14044
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 13184
Number of HSP's successfully gapped: 5
Length of query: 790
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 679
Effective length of database: 15,174,208
Effective search space: 10303287232
Effective search space used: 10303287232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008331
(2371 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108146.1| teashirt homolog 2 [Sus scrofa]. 605 e-175
Alignment gi|XP_001926785.3| PREDICTED: teashirt homolog 1-like [Sus scro... 263 3e-70
Alignment gi|XP_003355882.1| PREDICTED: LOW QUALITY PROTEIN: teashirt hom... 232 8e-61
>ref|NP_001108146.1| teashirt homolog 2 [Sus scrofa].
Length = 1035
Score = 605 bits (1561), Expect(2) = e-175
Identities = 301/334 (90%), Positives = 302/334 (90%)
Frame = +3
Query: 1329 MPRRKQQAPKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAE 1508
MPRRKQQAPKRAAGYA SGSVAQLQGSNDPGTDEELETGAE
Sbjct: 1 MPRRKQQAPKRAAGYAQEEQLKEEEEIKEEEEEEEDSGSVAQLQGSNDPGTDEELETGAE 60
Query: 1509 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH 1688
QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH
Sbjct: 61 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH 120
Query: 1689 SCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQ 1868
SCMDKMTAVYANILSDSYW ERRHCDTRNGSSKTDFDWHQDALSKSLQQ
Sbjct: 121 SCMDKMTAVYANILSDSYWSGLGLGFKLSSSERRHCDTRNGSSKTDFDWHQDALSKSLQQ 180
Query: 1869 NLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH 2048
NLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH
Sbjct: 181 NLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH 240
Query: 2049 YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH 2228
YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH
Sbjct: 241 YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH 300
Query: 2229 YQKVPLKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
YQKVPLKEPVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 301 YQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSP 334
Score = 31.2 bits (69), Expect(2) = e-175
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 2329 PDSTTGSFADPFSA 2370
PDSTTGSFADPF A
Sbjct: 334 PDSTTGSFADPFPA 347
>ref|XP_001926785.3| PREDICTED: teashirt homolog 1-like [Sus scrofa].
Length = 1247
Score = 263 bits (672), Expect = 3e-70
Identities = 147/317 (46%), Positives = 191/317 (60%), Gaps = 42/317 (13%)
Frame = +3
Query: 1506 EQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEA 1685
E K SYQNSP S +NQDA S S+ SDQ++ +KS SR+ +K+ P+ +
Sbjct: 217 EIKEAQSYQNSPVSTATNQDAGYGSPFSENSDQLAHLKSSSSRE--EKEEPPGPESVSYP 274
Query: 1686 HSCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCD---------------------- 1799
+ ++ AVYAN+ S+S W + D
Sbjct: 275 QDSLAQIKAVYANLFSESCWSSLALDLKKSSSTTSNSDVGQKEGSTPAPTPPTSTSGATG 334
Query: 1800 -------------------TRNGSSKTDFDWHQDALSKSLQQNLPPRSVSKPSLFSSVQL 1922
+ G + +DWHQ AL+K+LQQ + +PSLFS+VQL
Sbjct: 335 TTASTPSSGAASGSGTSTSSSGGGGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQL 394
Query: 1923 YRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSK 2102
YRQ++K+ G+VFTGAS+FRC+ CSAAYDTLVELTVHMNETGHY+DDNR KD + +SK
Sbjct: 395 YRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSK 454
Query: 2103 PRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKM 2279
PRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVHMIKTKHYQKVPLKEPVP I+ +
Sbjct: 455 PRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLV 514
Query: 2280 VTPAKKRVFDVHRPCSP 2330
+ K+ + D+ PCSP
Sbjct: 515 PSTKKRALQDLAAPCSP 531
>ref|XP_003355882.1| PREDICTED: LOW QUALITY PROTEIN: teashirt homolog 3-like, partial [Sus
scrofa].
Length = 983
Score = 232 bits (591), Expect = 8e-61
Identities = 125/280 (44%), Positives = 170/280 (60%), Gaps = 7/280 (2%)
Frame = +3
Query: 1512 KGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAHS 1691
K C SYQNSP + S+ + ++ES +S+ SD+++D +S ++ + K P T
Sbjct: 40 KTCPSYQNSPAAEFSSHEMDSESHISETSDRMADFESGSIKNEEETKEVAVPLEDTTVSD 99
Query: 1692 CMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD------FDWHQDALS 1853
+++M AVY N LS+SYW E+ + + + SS + FDWHQ A++
Sbjct: 100 SLEQMKAVYNNFLSNSYWSNLTLNLHQPSSEKNNGSSSSSSSSSSSCGSGSFDWHQSAMA 159
Query: 1854 KSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHM 2033
K+LQQ R + +PSLFS+VQLYRQSSK+ G++FTGAS+FRC+ CSAAYDTLVELTVHM
Sbjct: 160 KTLQQVSQSRMLPEPSLFSTVQLYRQSSKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 219
Query: 2034 NETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHM 2213
NETG KVLKCM+CG SF+SLQDLSVHM
Sbjct: 220 NETG----------------------------------KVLKCMYCGHSFESLQDLSVHM 245
Query: 2214 IKTKHYQKVPLKEPVPTISSKMVTPAKKRV-FDVHRPCSP 2330
IKTKHYQKVPLKEPV +++K++ A+K+ ++ P SP
Sbjct: 246 IKTKHYQKVPLKEPVTPVAAKIIPAARKKASLELELPSSP 285
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,630,005
Number of extensions: 2097262
Number of successful extensions: 8434
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8054
Number of HSP's successfully gapped: 6
Length of query: 790
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 683
Effective length of database: 8,679,953
Effective search space: 5928407899
Effective search space used: 5928407899
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008331
(2371 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_536703.2| teashirt homolog 2 [Mus musculus]. 563 e-161
Alignment gi|NP_758502.1| teashirt homolog 3 [Mus musculus]. 293 3e-79
Alignment gi|NP_001074769.1| teashirt homolog 1 [Mus musculus]. 268 1e-71
>ref|NP_536703.2| teashirt homolog 2 [Mus musculus].
Length = 1030
Score = 563 bits (1450), Expect(2) = e-161
Identities = 280/334 (83%), Positives = 288/334 (86%)
Frame = +3
Query: 1329 MPRRKQQAPKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAE 1508
MPRRKQQAPKRAAGYA SGSVAQ Q SND GTDEELETG E
Sbjct: 1 MPRRKQQAPKRAAGYAQEEVLKEEEEIKEEEEEEEDSGSVAQHQSSNDTGTDEELETGPE 60
Query: 1509 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH 1688
QKG FS QNSPGSHLSNQDAENESLLSDASDQVSD+KSVC RD SDKKA+ HPKLP+E H
Sbjct: 61 QKGYFSCQNSPGSHLSNQDAENESLLSDASDQVSDVKSVCGRDVSDKKANTHPKLPSEPH 120
Query: 1689 SCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQ 1868
+CMDKMTAVYANILSDSYW ERR+CDTRN S K DFDWHQDALSKSLQQ
Sbjct: 121 NCMDKMTAVYANILSDSYWSGLGLGFKLSNSERRNCDTRNSSGKNDFDWHQDALSKSLQQ 180
Query: 1869 NLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH 2048
NLP RSVSKPSLFSSVQLYRQSSK+CG+VFTGASRFRCRQCSAAYDTLVELTVHMNETGH
Sbjct: 181 NLPSRSVSKPSLFSSVQLYRQSSKLCGSVFTGASRFRCRQCSAAYDTLVELTVHMNETGH 240
Query: 2049 YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH 2228
YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH
Sbjct: 241 YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH 300
Query: 2229 YQKVPLKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
YQKVPLKEPVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 301 YQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSP 334
Score = 26.6 bits (57), Expect(2) = e-161
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 2329 PDSTTGSFADPFSA 2370
PDSTTGS AD FS+
Sbjct: 334 PDSTTGSLADSFSS 347
>ref|NP_758502.1| teashirt homolog 3 [Mus musculus].
Length = 1081
Score = 293 bits (751), Expect = 3e-79
Identities = 158/342 (46%), Positives = 210/342 (61%), Gaps = 8/342 (2%)
Frame = +3
Query: 1329 MPRRKQQAPKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAE 1508
MPRRKQQAP+RAA Y + +P
Sbjct: 1 MPRRKQQAPRRAAAYVSDELKAAALVEDDVEPE--------EQAADGEPSAKYMCPEKEL 52
Query: 1509 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH 1688
K C SYQNSP + S+ + ++ES +S+ SD+++D +S ++ + K P T
Sbjct: 53 SKACPSYQNSPAAEFSSHEMDSESHISETSDRMADFESSSIKNEEETKEVQVPLEDTIVS 112
Query: 1689 SCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD------FDWHQDAL 1850
+++M AVY N LS+SYW E + + SS + FDWHQ A+
Sbjct: 113 DSLEQMKAVYNNFLSNSYWSNLNLNLHQPSSENNGGSSSSSSSSSSSCGSGSFDWHQSAM 172
Query: 1851 SKSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVH 2030
+K+LQQ R + +PSLFS+VQLYRQSSK+ G++FTGAS+FRC+ CSAAYDTLVELTVH
Sbjct: 173 AKTLQQVSQNRMLPEPSLFSTVQLYRQSSKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 232
Query: 2031 MNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSV 2207
MNETGHY+DDN + D P +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSV
Sbjct: 233 MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV 292
Query: 2208 HMIKTKHYQKVPLKEPVPTISSKMVTPAKKR-VFDVHRPCSP 2330
HMIKTKHYQKVPLKEPV +++K++ A+K+ ++ P SP
Sbjct: 293 HMIKTKHYQKVPLKEPVTPVAAKIIPAARKKPSLELELPSSP 334
>ref|NP_001074769.1| teashirt homolog 1 [Mus musculus].
Length = 1084
Score = 268 bits (685), Expect = 1e-71
Identities = 166/390 (42%), Positives = 211/390 (54%), Gaps = 56/390 (14%)
Frame = +3
Query: 1329 MPRRKQQAPKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAE 1508
MPRRKQQAP+R+A Y S + + ++ +EE E
Sbjct: 1 MPRRKQQAPRRSAAYVPEEELKAAEIDEEHAEDGGLSLDIQE----SEFACNEETEIKEA 56
Query: 1509 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSR------------------ 1634
Q SYQNSP S +NQDA S S+ SDQ++ KS SR
Sbjct: 57 Q----SYQNSPVSTATNQDAGYGSPFSEGSDQLAHFKSSSSREEKEESQCPDSVSYPQDS 112
Query: 1635 ----------------------------------DASDKKASVHPKLP---TEAHSCMDK 1703
DAS K++S P T + +C
Sbjct: 113 LAQIKAVYANLFSESCWSSLALDLKKSNSATSNNDASQKESSTPTPTPPTSTASTACTTA 172
Query: 1704 MTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQNLPPR 1883
TA+ + S S H T + SS + +DWHQ AL+K+LQQ
Sbjct: 173 TTAITSCSTSTS-----------------HSSTTSNSSSSGYDWHQAALAKTLQQTSSYG 215
Query: 1884 SVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDN 2063
+ +PSLFS+VQLYRQ++K+ G+VFTGAS+FRC+ CSAAYDTLVELTVHMNETGHY+DDN
Sbjct: 216 LLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN 275
Query: 2064 RKKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKV 2240
R KD + +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVHMIKTKHYQKV
Sbjct: 276 RDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 335
Query: 2241 PLKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
PLKEPVP I+ + + K+ + D+ PCSP
Sbjct: 336 PLKEPVPAITKLVPSTKKRALQDLASPCSP 365
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,887,866
Number of extensions: 1738054
Number of successful extensions: 12325
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11113
Number of HSP's successfully gapped: 5
Length of query: 790
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 681
Effective length of database: 12,343,635
Effective search space: 8406015435
Effective search space used: 8406015435
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008331
(2371 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_775756.3| teashirt homolog 2 isoform 1 [Homo sapiens]. 573 e-165
Alignment gi|NP_001180350.1| teashirt homolog 2 isoform 2 [Homo sapiens]. 553 e-159
Alignment gi|NP_065907.2| teashirt homolog 3 [Homo sapiens]. 293 6e-79
Alignment gi|NP_005777.3| teashirt homolog 1 [Homo sapiens]. 249 1e-65
>ref|NP_775756.3| teashirt homolog 2 isoform 1 [Homo sapiens].
Length = 1034
Score = 573 bits (1478), Expect(2) = e-165
Identities = 287/334 (85%), Positives = 293/334 (87%)
Frame = +3
Query: 1329 MPRRKQQAPKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAE 1508
MPRRKQQAPKRAAGYA SGSVAQLQG ND GTDEELETG E
Sbjct: 1 MPRRKQQAPKRAAGYAQEEQLKEEEEIKEEEEEED-SGSVAQLQGGNDTGTDEELETGPE 59
Query: 1509 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH 1688
QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVC RDASDKKA H +LP EAH
Sbjct: 60 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCGRDASDKKAHTHVRLPNEAH 119
Query: 1689 SCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQ 1868
+CMDKMTAVYANILSDSYW ERR+CDTRNGS+K+DFDWHQDALSKSLQQ
Sbjct: 120 NCMDKMTAVYANILSDSYWSGLGLGFKLSNSERRNCDTRNGSNKSDFDWHQDALSKSLQQ 179
Query: 1869 NLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH 2048
NLP RSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH
Sbjct: 180 NLPSRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGH 239
Query: 2049 YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH 2228
YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH
Sbjct: 240 YQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKH 299
Query: 2229 YQKVPLKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
YQKVPLKEPVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 300 YQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSP 333
Score = 28.9 bits (63), Expect(2) = e-165
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 2329 PDSTTGSFADPFSA 2370
PDSTTGSFAD FS+
Sbjct: 333 PDSTTGSFADSFSS 346
>ref|NP_001180350.1| teashirt homolog 2 isoform 2 [Homo sapiens].
Length = 1031
Score = 553 bits (1426), Expect(2) = e-159
Identities = 271/298 (90%), Positives = 277/298 (92%)
Frame = +3
Query: 1437 SGSVAQLQGSNDPGTDEELETGAEQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDI 1616
SGSVAQLQG ND GTDEELETG EQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDI
Sbjct: 33 SGSVAQLQGGNDTGTDEELETGPEQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDI 92
Query: 1617 KSVCSRDASDKKASVHPKLPTEAHSCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHC 1796
KSVC RDASDKKA H +LP EAH+CMDKMTAVYANILSDSYW ERR+C
Sbjct: 93 KSVCGRDASDKKAHTHVRLPNEAHNCMDKMTAVYANILSDSYWSGLGLGFKLSNSERRNC 152
Query: 1797 DTRNGSSKTDFDWHQDALSKSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRF 1976
DTRNGS+K+DFDWHQDALSKSLQQNLP RSVSKPSLFSSVQLYRQSSKMCGTVFTGASRF
Sbjct: 153 DTRNGSNKSDFDWHQDALSKSLQQNLPSRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRF 212
Query: 1977 RCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVL 2156
RCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVL
Sbjct: 213 RCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVL 272
Query: 2157 KCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
KCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDV+RPCSP
Sbjct: 273 KCMFCGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSP 330
Score = 28.9 bits (63), Expect(2) = e-159
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 2329 PDSTTGSFADPFSA 2370
PDSTTGSFAD FS+
Sbjct: 330 PDSTTGSFADSFSS 343
>ref|NP_065907.2| teashirt homolog 3 [Homo sapiens].
Length = 1081
Score = 293 bits (749), Expect = 6e-79
Identities = 156/342 (45%), Positives = 210/342 (61%), Gaps = 8/342 (2%)
Frame = +3
Query: 1329 MPRRKQQAPKRAAGYAXXXXXXXXXXXXXXXXXXXXSGSVAQLQGSNDPGTDEELETGAE 1508
MPRRKQQAP+RAA Y + +P
Sbjct: 1 MPRRKQQAPRRAAAYVSEELKAAALVDEGLDPEEHTA--------DGEPSAKYMCPEKEL 52
Query: 1509 QKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIKSVCSRDASDKKASVHPKLPTEAH 1688
+ C SYQNSP + S + ++ES +S+ SD+++D +S ++ + K P T
Sbjct: 53 ARACPSYQNSPAAEFSCHEMDSESHISETSDRMADFESGSIKNEEETKEVTVPLEDTTVS 112
Query: 1689 SCMDKMTAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTD------FDWHQDAL 1850
+++M AVY N LS+SYW E+ + + + SS + FDWHQ A+
Sbjct: 113 DSLEQMKAVYNNFLSNSYWSNLNLNLHQPSSEKNNGSSSSSSSSSSSCGSGSFDWHQSAM 172
Query: 1851 SKSLQQNLPPRSVSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVH 2030
+K+LQQ R + +PSLFS+VQLYRQSSK+ G++FTGAS+FRC+ CSAAYDTLVELTVH
Sbjct: 173 AKTLQQVSQSRMLPEPSLFSTVQLYRQSSKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 232
Query: 2031 MNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSV 2207
MNETGHY+DDN + D P +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSV
Sbjct: 233 MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV 292
Query: 2208 HMIKTKHYQKVPLKEPVPTISSKMVTPAKKRV-FDVHRPCSP 2330
HMIKTKHYQKVPLKEPV +++K++ +K+ ++ P SP
Sbjct: 293 HMIKTKHYQKVPLKEPVTPVAAKIIPATRKKASLELELPSSP 334
>ref|NP_005777.3| teashirt homolog 1 [Homo sapiens].
Length = 1032
Score = 249 bits (635), Expect = 1e-65
Identities = 148/329 (44%), Positives = 187/329 (56%), Gaps = 54/329 (16%)
Frame = +3
Query: 1506 EQKGCFSYQNSPGSHLSNQDAENESLLSDASDQVSDIK---------------------- 1619
E K SYQNSP S +NQDA S S++SDQ++ K
Sbjct: 7 EIKEAQSYQNSPVSSATNQDAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQD 66
Query: 1620 ------------------------------SVCSRDASDKKASVH-PKLPTEAHSCMDKM 1706
+ + DAS K++S P PT S
Sbjct: 67 SLAQIKAVYANLFSESCWSSLALDLKKSGSTTSTNDASQKESSAPTPTPPTCPVSTTGPT 126
Query: 1707 TAVYANILSDSYWXXXXXXXXXXXXERRHCDTRNGSSKTDFDWHQDALSKSLQQNLPPRS 1886
T+ + S S H T + SS + +DWHQ AL+K+LQQ
Sbjct: 127 TSTPSTSCSSS---------------TSHSSTTSTSSSSGYDWHQAALAKTLQQTSSYGL 171
Query: 1887 VSKPSLFSSVQLYRQSSKMCGTVFTGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNR 2066
+ +PSLFS+VQLYRQ++K+ G+VFTGAS+FRC+ CSAAYDTLVELTVHMNETGHY+DDNR
Sbjct: 172 LPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNR 231
Query: 2067 KKDKLRPTSYSKPRKRAFQDMD-KEDAQKVLKCMFCGDSFDSLQDLSVHMIKTKHYQKVP 2243
KD + +SKPRKR+ +M+ KEDAQKVLKCM+CG SF+SLQDLSVHMIKTKHYQKVP
Sbjct: 232 DKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVP 291
Query: 2244 LKEPVPTISSKMVTPAKKRVFDVHRPCSP 2330
LKEPVP I+ + + K+ + D+ PCSP
Sbjct: 292 LKEPVPAITKLVPSTKKRALQDLAPPCSP 320
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 79,116,458
Number of extensions: 2069845
Number of successful extensions: 15414
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 13900
Number of HSP's successfully gapped: 7
Length of query: 790
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 679
Effective length of database: 14,638,160
Effective search space: 9939310640
Effective search space used: 9939310640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008331
(2371 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1816 0.0
Sscrofa_Chr06 129 8e-27
Sscrofa_Chr01 70 6e-09
>Sscrofa_Chr17
|| Length = 69701581
Score = 1816 bits (916), Expect = 0.0
Identities = 932/936 (99%), Gaps = 1/936 (0%)
Strand = Plus / Plus
Query: 1436 cagcggctcggtagctcaacttcagggcagcaatgacccagggacagacgaggagctaga 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049491 cagcggctcggtagctcaacttcagggcagcaatgacccagggacagacgaggagctaga 61049550
Query: 1496 gacgggggccgagcagaaaggctgcttcagctaccagaactctccagggagtcatctgtc 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049551 gacgggggccgagcagaaaggctgcttcagctaccagaactctccagggagtcatctgtc 61049610
Query: 1556 caatcaggacgccgagaacgagtccctgctgagtgacgccagtgaccaggtgtcagacat 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049611 caatcaggacgccgagaacgagtccctgctgagtgacgccagtgaccaggtgtcagacat 61049670
Query: 1616 caagagcgtgtgcagccgagatgcctcagacaagaaagctagcgtgcaccccaagctccc 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049671 caagagcgtgtgcagccgagatgcctcagacaagaaagctagcgtgcaccccaagctccc 61049730
Query: 1676 caccgaagcccacagttgcatggataagatgaccgctgtctatgccaacatcctgtctga 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049731 caccgaagcccacagttgcatggataagatgaccgctgtctatgccaacatcctgtctga 61049790
Query: 1736 ttcctactggtccggcctgggacttggcttcaagctgtccagcagcgagaggcggcattg 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049791 ttcctactggtccggcctgggacttggcttcaagctgtccagcagcgagaggcggcattg 61049850
Query: 1796 tgacacccgaaatggcagcagcaagactgatttcgactggcaccaggacgctctgtccaa 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049851 tgacacccgaaatggcagcagcaagactgatttcgactggcaccaggacgctctgtccaa 61049910
Query: 1856 aagcctgcagcagaacttgcctcccaggtcggtgtccaagcccagcctgttcagctcggt 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049911 aagcctgcagcagaacttgcctcccaggtcggtgtccaagcccagcctgttcagctcggt 61049970
Query: 1916 ccagctgtaccggcagagcagtaagatgtgcgggaccgtcttcaccggggccagcaggtt 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61049971 ccagctgtaccggcagagcagtaagatgtgcgggaccgtcttcaccggggccagcaggtt 61050030
Query: 1976 ccggtgccggcagtgcagcgccgcctacgacaccttggtggagctgactgtgcacatgaa 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61050031 ccggtgccggcagtgcagcgccgcctacgacaccttggtggagctgactgtgcacatgaa 61050090
Query: 2036 cgaaacaggccactatcaagatgacaaccgcaaaaaggacaagctcaggcccacgagcta 2095
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61050091 cgaaacgggccactatcaagatgacaaccgcaaaaaggacaagctcaggcccacgagcta 61050150
Query: 2096 ttccaagccccggaaaagggccttccaggacatggacaaagaggacgctcagaaggttct 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61050151 ttccaagccccggaaaagggccttccaggacatggacaaagaggacgctcagaaggttct 61050210
Query: 2156 gaaatgtatgttttgtggcgactccttcgattccctccaagatttgagtgtccacatgat 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61050211 gaaatgtatgttttgtggcgactccttcgattccctccaagatttgagtgtccacatgat 61050270
Query: 2216 caaaacaaaacattaccaaaaagtgcctttgaaggagcccgttcccaccatttcatcaaa 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61050271 caaaacaaaacattaccaaaaagtgcctttgaaggagcccgttcccaccatttcatcaaa 61050330
Query: 2276 aatggtcactccggcgaagaaacgcgtctttgacgtccatcggccgtgttccccccgact 2335
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 61050331 aatggtcactccggcgaagaaacgcgtctttgacgtcaatcggccgtgtt-cccccgact 61050389
Query: 2336 cgaccacgggctcgtttgcagatccgttttctgctc 2371
||||||||||||||||||||||||||||| ||||||
Sbjct: 61050390 cgaccacgggctcgtttgcagatccgtttcctgctc 61050425
Score = 412 bits (208), Expect = e-112
Identities = 256/279 (91%)
Strand = Plus / Plus
Query: 203 gaggggtgtctgctcgcccggtgggcacgtcctcgcaccagcgaagaaggaagagggctc 262
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 60735636 gaggggtgtctgctcgcccggtgggcacgtcctcgaaccagcgaagagggaagagggctc 60735695
Query: 263 acggaggagcccaccccgggcggcaagcccgggtccccgcccccagctccccggcgggac 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60735696 acggaggagcccaccccgggcggcaagcccgggtccccgcccccagctccccggcgggac 60735755
Query: 323 actgtccctttaatagactccctctgcctggcgctctgcggctggggagtaaatttctcc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60735756 actgtccctttaatagactccctctgcctggcgctctgcggctggggagtaaatttctcc 60735815
Query: 383 ctgtcatcaggtcgcggnnnnnnnnnnnnnnnnnnnnntttgttaatgttcagtttgttc 442
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 60735816 ctgtcatcaggtcgcggggagaggaggaggaggaggagtttgttaatgttcagtttgttc 60735875
Query: 443 agcgggatcgatgtttgctggcatcgcctcgccctgtct 481
|||||||||||||||||||||||||||||||||||||||
Sbjct: 60735876 agcgggatcgatgtttgctggcatcgcctcgccctgtct 60735914
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 1061 tccaaaacaaacaaacaaacaaggcagaaccaacctctacttcaaaccagccggcacagc 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736495 tccaaaacaaacaaacaaacaaggcagaaccaacctctacttcaaaccagccggcacagc 60736554
Query: 1121 cacccgtgtctgccacccagagaggggggtctctggcccgtggtggaggagttgcagggg 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736555 cacccgtgtctgccacccagagaggggggtctctggcccgtggtggaggagttgcagggg 60736614
Query: 1181 ggatcgtcagggggacagaggccgagtgacgccctaggagccaccgggcaggaggcggag 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736615 ggatcgtcagggggacagaggccgagtgacgccctaggagccaccgggcaggaggcggag 60736674
Query: 1241 gagacccagagaggcgagagagaca 1265
|||||||||||||||||||||||||
Sbjct: 60736675 gagacccagagaggcgagagagaca 60736699
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 645 aattccagattttctgtcttcccaaacccgctcctgtcctctcgcatatcactcacagac 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736078 aattccagattttctgtcttcccaaacccgctcctgtcctctcgcatatcactcacagac 60736137
Query: 705 ggggatctgacagcagccacaaacctacagtgagtgatccctctctgcccccagcacgaa 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736138 ggggatctgacagcagccacaaacctacagtgagtgatccctctctgcccccagcacgaa 60736197
Query: 765 tccgaatccgccatagagatcgc 787
|||||||||||||||||||||||
Sbjct: 60736198 tccgaatccgccatagagatcgc 60736220
Score = 214 bits (108), Expect = 2e-52
Identities = 128/138 (92%)
Strand = Plus / Plus
Query: 849 aaaagaagaaaccactaccttcccaggattgccnnnnnnnnnnccttatctttacgcgcg 908
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 60736282 aaaagaagaaaccactaccttcccaggattgccttttttttttccttatctttacgcgcg 60736341
Query: 909 cgtgtgcgtccctcgtcccttccattcgaacccggtcttggatgtttaataaagaaatca 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736342 cgtgtgcgtccctcgtcccttccattcgaacccggtcttggatgtttaataaagaaatca 60736401
Query: 969 agtgtctcaacagtcacc 986
||||||||||||||||||
Sbjct: 60736402 agtgtctcaacagtcacc 60736419
Score = 180 bits (91), Expect = 2e-42
Identities = 126/135 (93%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 1 gattaagagatt-ggaggatggcggtgatcacttttaag-tgcccacccgtttcattccc 58
|||||||||||| |||||||||| ||||||||| ||||| |||||||||| |||| ||||
Sbjct: 60735432 gattaagagatttggaggatggccgtgatcactcttaaggtgcccacccgcttcactccc 60735491
Query: 59 caaagcacacttaagtcttcaggctcctgtgttgataaggctcctgttaatggtcctgcc 118
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60735492 caaagcacacctaagttctcaggctcctgtgttgataaggctcctgttaatggtcctgcc 60735551
Query: 119 ggtcagctcacctgg 133
|||||||||||||||
Sbjct: 60735552 ggtcagctcacctgg 60735566
Score = 137 bits (69), Expect = 3e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1301 agaagtgggactggagcgaagtagagcgatgccaaggaggaaacagcaggcacccaagcg 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60736735 agaagtgggactggagcgaagtagagcgatgccaaggaggaaacagcaggcacccaagcg 60736794
Query: 1361 ggcggcagg 1369
|||||||||
Sbjct: 60736795 ggcggcagg 60736803
>Sscrofa_Chr06
|| Length = 157765593
Score = 129 bits (65), Expect = 8e-27
Identities = 125/145 (86%)
Strand = Plus / Minus
Query: 1894 agcccagcctgttcagctcggtccagctgtaccggcagagcagtaagatgtgcgggaccg 1953
||||||||||||||||| |||| |||||||||||||||||||| ||| | | ||| ||
Sbjct: 36790608 agcccagcctgttcagcacggtgcagctgtaccggcagagcagcaagctctacggctcca 36790549
Query: 1954 tcttcaccggggccagcaggttccggtgccggcagtgcagcgccgcctacgacaccttgg 2013
|||||||||||||||||| |||||| ||| | | ||||| || |||||||||||| |||
Sbjct: 36790548 tcttcaccggggccagcaagttccgctgcaaggactgcagtgctgcctacgacaccctgg 36790489
Query: 2014 tggagctgactgtgcacatgaacga 2038
||||| |||| ||||||||||||||
Sbjct: 36790488 tggagttgacggtgcacatgaacga 36790464
>Sscrofa_Chr01
|| Length = 315321322
Score = 69.9 bits (35), Expect = 6e-09
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 2200 tgagtgtccacatgatcaaaacaaaacattaccaaaaagtgcctttgaaggagcc 2254
||||||||||||||||||| ||||| |||||||| ||||||||| | ||||||||
Sbjct: 164833608 tgagtgtccacatgatcaagacaaagcattaccagaaagtgcctctcaaggagcc 164833662
Score = 67.9 bits (34), Expect = 2e-08
Identities = 136/170 (80%)
Strand = Plus / Plus
Query: 1894 agcccagcctgttcagctcggtccagctgtaccggcagagcagtaagatgtgcgggaccg 1953
|||||||||| |||||| | || ||||| |||||||||| || ||| ||| ||| | |
Sbjct: 164833299 agcccagcctcttcagcaccgtgcagctctaccggcagaacaacaagctgtacggctctg 164833358
Query: 1954 tcttcaccggggccagcaggttccggtgccggcagtgcagcgccgcctacgacaccttgg 2013
||||||| || ||||||| |||||| ||| | |||||||| || || ||||| |||
Sbjct: 164833359 tcttcactggcgccagcaagttccgctgcaaagactgcagcgctgcgtatgacacactgg 164833418
Query: 2014 tggagctgactgtgcacatgaacgaaacaggccactatcaagatgacaac 2063
|||||||||| ||||||||||| || || |||||||| | |||||||||
Sbjct: 164833419 tggagctgacggtgcacatgaatgagacgggccactaccgcgatgacaac 164833468
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,013,749
Number of extensions: 40706
Number of successful extensions: 40706
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 40704
Number of HSP's successfully gapped: 13
Length of query: 2371
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2349
Effective length of database: 2,808,408,574
Effective search space: 6596951740326
Effective search space used: 6596951740326
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)