Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008336
(982 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068640.1| family with sequence similarity 49, member A... 499 e-141
Alignment gi|NP_001039512.1| hypothetical protein LOC510019 [Bos taurus]. 380 e-105
>ref|NP_001068640.1| family with sequence similarity 49, member A [Bos taurus].
Length = 323
Score = 499 bits (1284), Expect = e-141
Identities = 247/252 (98%), Positives = 250/252 (99%)
Frame = +1
Query: 226 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 405
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP
Sbjct: 1 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 60
Query: 406 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 585
EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
Sbjct: 61 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120
Query: 586 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 765
LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
Sbjct: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180
Query: 766 EMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEYR 945
EMANRMSLFYAEATPMLKTLSNATMHFVSE +TLPIENTTDCLSTMTSVCKVMLETPEYR
Sbjct: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240
Query: 946 SRFTSEKTLIVC 981
SRFTSE+TL+ C
Sbjct: 241 SRFTSEETLMFC 252
>ref|NP_001039512.1| hypothetical protein LOC510019 [Bos taurus].
Length = 324
Score = 380 bits (976), Expect = e-105
Identities = 191/253 (75%), Positives = 221/253 (87%), Gaps = 1/253 (0%)
Frame = +1
Query: 226 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 402
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 403 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 582
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 583 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 762
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 763 NEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEY 942
NE+ANRMSLFYAEATPMLKTLS+AT FVSE + LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 943 RSRFTSEKTLIVC 981
RSRFT+E+T+ C
Sbjct: 241 RSRFTNEETVSFC 253
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,070,514
Number of extensions: 948408
Number of successful extensions: 3267
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3262
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008336
(982 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532880.2| PREDICTED: similar to CG32066-PB, isoform B [Ca... 505 e-143
Alignment gi|XP_539162.2| PREDICTED: similar to CG32066-PB, isoform B [Ca... 382 e-106
>ref|XP_532880.2| PREDICTED: similar to CG32066-PB, isoform B [Canis familiaris].
Length = 363
Score = 505 bits (1300), Expect = e-143
Identities = 250/255 (98%), Positives = 253/255 (99%)
Frame = +1
Query: 217 FAGMGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKG 396
FAGMGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKG
Sbjct: 38 FAGMGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKG 97
Query: 397 AGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTP 576
AGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTP
Sbjct: 98 AGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTP 157
Query: 577 TQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENE 756
TQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENE
Sbjct: 158 TQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENE 217
Query: 757 VNNEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETP 936
VNNEMANRMSLFYAEATPMLKTLSNATMHFVSE +TLPIENTTDCLSTMTSVCKVMLETP
Sbjct: 218 VNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETP 277
Query: 937 EYRSRFTSEKTLIVC 981
EYRSRFTSE+TL+ C
Sbjct: 278 EYRSRFTSEETLMFC 292
>ref|XP_539162.2| PREDICTED: similar to CG32066-PB, isoform B [Canis familiaris].
Length = 324
Score = 382 bits (982), Expect = e-106
Identities = 192/253 (75%), Positives = 221/253 (87%), Gaps = 1/253 (0%)
Frame = +1
Query: 226 MGNLLKVLTREIE-NYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 402
MGNL+KVLTR+I+ N HFFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLIKVLTRDIDHNAAHFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 403 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 582
EIR+AIQ+P D +LQEKAW AV PLV +LK FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKTFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 583 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 762
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 763 NEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEY 942
NE+ANRMSLFYAEATPMLKTLS+AT FVSE + LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 943 RSRFTSEKTLIVC 981
RSRFT+E+T+ C
Sbjct: 241 RSRFTNEETVSFC 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,818,929
Number of extensions: 988835
Number of successful extensions: 3188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3181
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008336
(982 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125393.1| PREDICTED: protein FAM49A-like [Sus scrofa]. 499 e-141
Alignment gi|XP_003355021.1| PREDICTED: protein FAM49B [Sus scrofa]. 384 e-107
Alignment gi|XP_001925120.2| PREDICTED: protein FAM49B isoform 1 [Sus scr... 380 e-106
Alignment gi|XP_003361838.1| PREDICTED: protein FAM49B-like, partial [Sus... 174 7e-44
>ref|XP_003125393.1| PREDICTED: protein FAM49A-like [Sus scrofa].
Length = 323
Score = 499 bits (1284), Expect = e-141
Identities = 247/252 (98%), Positives = 250/252 (99%)
Frame = +1
Query: 226 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 405
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP
Sbjct: 1 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 60
Query: 406 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 585
EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
Sbjct: 61 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120
Query: 586 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 765
LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
Sbjct: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180
Query: 766 EMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEYR 945
EMANRMSLFYAEATPMLKTLSNATMHFVSE +TLPIENTTDCLSTMTSVCKVMLETPEYR
Sbjct: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240
Query: 946 SRFTSEKTLIVC 981
SRFTSE+TL+ C
Sbjct: 241 SRFTSEETLMFC 252
>ref|XP_003355021.1| PREDICTED: protein FAM49B [Sus scrofa].
Length = 324
Score = 384 bits (985), Expect = e-107
Identities = 192/253 (75%), Positives = 222/253 (87%), Gaps = 1/253 (0%)
Frame = +1
Query: 226 MGNLLKVLTREIE-NYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 402
MGNL+KVLTR+I+ N HFFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLIKVLTRDIDHNAAHFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 403 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 582
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 583 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 762
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 763 NEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEY 942
NE+ANRMSLFYAEATPMLKTLS+AT FVSE + LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 943 RSRFTSEKTLIVC 981
RSRFT+E+T+ C
Sbjct: 241 RSRFTNEETVSFC 253
>ref|XP_001925120.2| PREDICTED: protein FAM49B isoform 1 [Sus scrofa].
Length = 324
Score = 380 bits (976), Expect = e-106
Identities = 191/253 (75%), Positives = 221/253 (87%), Gaps = 1/253 (0%)
Frame = +1
Query: 226 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 402
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 403 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 582
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 583 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 762
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 763 NEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEY 942
NE+ANRMSLFYAEATPMLKTLS+AT FVSE + LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 943 RSRFTSEKTLIVC 981
RSRFT+E+T+ C
Sbjct: 241 RSRFTNEETVSFC 253
>ref|XP_003361838.1| PREDICTED: protein FAM49B-like, partial [Sus scrofa].
Length = 178
Score = 174 bits (441), Expect = 7e-44
Identities = 85/107 (79%), Positives = 95/107 (88%)
Frame = +1
Query: 661 MRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATM 840
M NPAIQNDFSYYRRT+SR RINN+ + ENEVNNE+ANRMSLFYAEATPMLKTLS+AT
Sbjct: 1 MTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATT 60
Query: 841 HFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEKTLIVC 981
FVSE + LPIENTTDCLSTM SVC+VMLETPEYRSRFT+E+T+ C
Sbjct: 61 KFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFC 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,199,866
Number of extensions: 607803
Number of successful extensions: 2174
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2169
Number of HSP's successfully gapped: 4
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008336
(982 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139591.1| family with sequence similarity 49, member A... 497 e-141
Alignment gi|NP_084034.2| family with sequence similarity 49, member A [M... 497 e-141
Alignment gi|NP_659095.1| hypothetical protein LOC223601 [Mus musculus]. 380 e-106
>ref|NP_001139591.1| family with sequence similarity 49, member A [Mus musculus].
Length = 323
Score = 497 bits (1280), Expect = e-141
Identities = 246/252 (97%), Positives = 249/252 (98%)
Frame = +1
Query: 226 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 405
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESIL DLQAYKGAGP
Sbjct: 1 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAGP 60
Query: 406 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 585
EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
Sbjct: 61 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120
Query: 586 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 765
LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
Sbjct: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180
Query: 766 EMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEYR 945
EMANRMSLFYAEATPMLKTLSNATMHFVSE +TLPIENTTDCLSTMTSVCKVMLETPEYR
Sbjct: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240
Query: 946 SRFTSEKTLIVC 981
SRFTSE+TL+ C
Sbjct: 241 SRFTSEETLMFC 252
>ref|NP_084034.2| family with sequence similarity 49, member A [Mus musculus].
Length = 323
Score = 497 bits (1280), Expect = e-141
Identities = 246/252 (97%), Positives = 249/252 (98%)
Frame = +1
Query: 226 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 405
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESIL DLQAYKGAGP
Sbjct: 1 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAGP 60
Query: 406 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 585
EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
Sbjct: 61 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120
Query: 586 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 765
LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
Sbjct: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180
Query: 766 EMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEYR 945
EMANRMSLFYAEATPMLKTLSNATMHFVSE +TLPIENTTDCLSTMTSVCKVMLETPEYR
Sbjct: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240
Query: 946 SRFTSEKTLIVC 981
SRFTSE+TL+ C
Sbjct: 241 SRFTSEETLMFC 252
>ref|NP_659095.1| hypothetical protein LOC223601 [Mus musculus].
Length = 324
Score = 380 bits (976), Expect = e-106
Identities = 191/253 (75%), Positives = 221/253 (87%), Gaps = 1/253 (0%)
Frame = +1
Query: 226 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 402
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 403 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 582
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 583 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 762
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 763 NEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEY 942
NE+ANRMSLFYAEATPMLKTLS+AT FVSE + LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 943 RSRFTSEKTLIVC 981
RSRFT+E+T+ C
Sbjct: 241 RSRFTNEETVSFC 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,497,858
Number of extensions: 813979
Number of successful extensions: 2801
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2789
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008336
(982 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_110424.1| family with sequence similarity 49, member A [H... 499 e-141
Alignment gi|NP_057707.3| hypothetical protein LOC51571 [Homo sapiens]. 380 e-105
>ref|NP_110424.1| family with sequence similarity 49, member A [Homo sapiens].
Length = 323
Score = 499 bits (1284), Expect = e-141
Identities = 247/252 (98%), Positives = 250/252 (99%)
Frame = +1
Query: 226 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 405
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP
Sbjct: 1 MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGP 60
Query: 406 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 585
EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH
Sbjct: 61 EIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQH 120
Query: 586 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 765
LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN
Sbjct: 121 LEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNN 180
Query: 766 EMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEYR 945
EMANRMSLFYAEATPMLKTLSNATMHFVSE +TLPIENTTDCLSTMTSVCKVMLETPEYR
Sbjct: 181 EMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYR 240
Query: 946 SRFTSEKTLIVC 981
SRFTSE+TL+ C
Sbjct: 241 SRFTSEETLMFC 252
>ref|NP_057707.3| hypothetical protein LOC51571 [Homo sapiens].
Length = 324
Score = 380 bits (976), Expect = e-105
Identities = 191/253 (75%), Positives = 221/253 (87%), Gaps = 1/253 (0%)
Frame = +1
Query: 226 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 402
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 403 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 582
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS RLE AL+ LL +LT PY+PTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 583 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 762
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 763 NEMANRMSLFYAEATPMLKTLSNATMHFVSEKQTLPIENTTDCLSTMTSVCKVMLETPEY 942
NE+ANRMSLFYAEATPMLKTLS+AT FVSE + LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 943 RSRFTSEKTLIVC 981
RSRFT+E+T+ C
Sbjct: 241 RSRFTNEETVSFC 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,185,532
Number of extensions: 977298
Number of successful extensions: 3279
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008336
(982 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 281 4e-73
>Sscrofa_Chr03
|| Length = 144787322
Score = 281 bits (142), Expect = 4e-73
Identities = 151/154 (98%)
Strand = Plus / Plus
Query: 64 gattgtcactcaccaaagacggagaaaccacaggattctcgggggccacagccctgttgg 123
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 129259132 gattgtcactcaccaaggacggagaaaccacagggttctcgggggccacagccctgttgg 129259191
Query: 124 ggaagccagacgtgtcttgaccaagcggctgctcacctgcttcgttccatcagcctggat 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 129259192 ggaagccagacgtgtcttgaccaagcggctgctcatctgcttcgttccatcagcctggat 129259251
Query: 184 tggtgaatctgaatcacaagggagatctccaggt 217
||||||||||||||||||||||||||||||||||
Sbjct: 129259252 tggtgaatctgaatcacaagggagatctccaggt 129259285
Score = 264 bits (133), Expect = 8e-68
Identities = 142/145 (97%)
Strand = Plus / Plus
Query: 522 agaaaaagctcttcagagtttattggaatcgctgacctgtccaccctacacgccaaccca 581
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 129306957 agaaaaagctcttcagagtttactggaatcactgacctgtccaccctacacgccaaccca 129307016
Query: 582 gcacctggagcgggagcaggccctcgccaaggagtttgcggaaattctgcatttcaccct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129307017 gcacctggagcgggagcaggccctcgccaaggagtttgcggaaattctgcatttcaccct 129307076
Query: 642 acgattcgatgagctgaagatgagg 666
||||||||||||||||||| |||||
Sbjct: 129307077 acgattcgatgagctgaaggtgagg 129307101
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 296 atgcccagcccaccgaaggagagagggagatatggaaccagatcagcgccgtcctccagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129303196 atgcccagcccaccgaaggagagagggagatatggaaccagatcagcgccgtcctccagg 129303255
Query: 356 attccgagagcatccttgctgacctgcaggcttacaagggcgcggggccagagatccgag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129303256 attccgagagcatccttgctgacctgcaggcttacaagggcgcggggccagagatccgag 129303315
Query: 416 acg 418
|||
Sbjct: 129303316 acg 129303318
Score = 224 bits (113), Expect = 7e-56
Identities = 116/117 (99%)
Strand = Plus / Plus
Query: 739 ctagacattgagaatgaagtcaacaatgagatggccaatcgaatgtccctcttctacgca 798
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129307815 ctagacattgagaatgaagtcaacaatgagatggccaatcgaatgtccctcttctacgcg 129307874
Query: 799 gaagccacgccaatgctgaaaaccctcagcaacgccaccatgcactttgtctccgaa 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129307875 gaagccacgccaatgctgaaaaccctcagcaacgccaccatgcactttgtctccgaa 129307931
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 418 gccattcaaaatcccaacgacattcaacttcaagaaaaagcttggaatgcagtgtgtcct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129304575 gccattcaaaatcccaacgacattcaacttcaagaaaaagcttggaatgcagtgtgtcct 129304634
Query: 478 ttggtcgtgaggctaaagagattttatgagttttccataaggctag 523
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129304635 ttggtcgtgaggctaaagagattttatgagttttccataaggctag 129304680
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 214 aggtttgctgggatgggaaacctgctcaaagtccttaccagggaaattgaaaactacccg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129289925 aggtttgctgggatgggaaacctgctcaaagtccttaccagggaaattgaaaactacccg 129289984
Query: 274 cattttttcctggattttgaaa 295
||||||||||||||||||||||
Sbjct: 129289985 cattttttcctggattttgaaa 129290006
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 860 aaaccctgccaatagagaacaccacagactgcctcagtacgatgacaagcgtttgtaaag 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129308026 aaaccctgccaatagagaacaccacagactgcctcagtacgatgacaagcgtttgtaaag 129308085
Query: 920 tcatgctggaaactccg 936
|||||||||||||||||
Sbjct: 129308086 tcatgctggaaactccg 129308102
Score = 151 bits (76), Expect = 9e-34
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 659 agatgaggaacccggccattcagaatgatttcagctactacagaaggaccatcagtcgca 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129307569 agatgaggaacccggccattcagaatgatttcagctactacagaaggaccatcagtcgca 129307628
Query: 719 atcgcatcaacaacatgcat 738
|||| |||||||||||||||
Sbjct: 129307629 atcgtatcaacaacatgcat 129307648
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,360,421
Number of extensions: 99
Number of successful extensions: 99
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 8
Length of query: 982
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 961
Effective length of database: 2,808,413,156
Effective search space: 2698885042916
Effective search space used: 2698885042916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)