Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008339
(1391 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179333.1| male-specific lethal 3 homolog [Bos taurus]. 572 e-163
Alignment gi|XP_002700486.1| PREDICTED: male-specific lethal 3 homolog (D... 572 e-163
Alignment gi|XP_002700487.1| PREDICTED: male-specific lethal 3 homolog (D... 514 e-146
Alignment gi|XP_002707478.1| PREDICTED: male-specific lethal 3 homolog (D... 514 e-146
>ref|NP_001179333.1| male-specific lethal 3 homolog [Bos taurus].
Length = 520
Score = 572 bits (1473), Expect = e-163
Identities = 297/405 (73%), Positives = 301/405 (74%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
+IVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 34 KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLAKKAVAR 93
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRKRKRCRLPGVDSVLKSLPA
Sbjct: 94 LRSTGRKRKRCRLPGVDSVLKSLPADEKDENDENSISSSSDSEEKDGEISEEGDTEEKTE 153
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PELH K VLKKKLEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 154 VKEG--PELHTKKEMEERTITIEIPDVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 211
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHH +PHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 212 YVKHFAINAAFSANERPRHHHVIPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 271
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQVQYKKVTSSKFFLPIKESTT+TNR GEP
Sbjct: 272 LLYPYEQVQYKKVTSSKFFLPIKESTTSTNRNQEELSPSPPLLNPSTPQSTESQPTSGEP 331
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 1254
TPKRRK EPEA QSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT
Sbjct: 332 TTPKRRKGEPEAFQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 391
Query: 1255 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVFSWELVPDS 1389
PVHSRSSSPVPLTPSKEGS VFAGFEGRRTNEINEV SW+LVPDS
Sbjct: 392 PVHSRSSSPVPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDS 436
>ref|XP_002700486.1| PREDICTED: male-specific lethal 3 homolog (Drosophila) isoform 1 [Bos
taurus].
Length = 520
Score = 572 bits (1473), Expect = e-163
Identities = 297/405 (73%), Positives = 301/405 (74%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
+IVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 34 KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLAKKAVAR 93
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRKRKRCRLPGVDSVLKSLPA
Sbjct: 94 LRSTGRKRKRCRLPGVDSVLKSLPADEKDENDENSISSSSDSEEKDGEISEEGDTEEKTE 153
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PELH K VLKKKLEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 154 VKEG--PELHTKKEMEERTITIEIPDVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 211
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHH +PHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 212 YVKHFAINAAFSANERPRHHHVIPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 271
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQVQYKKVTSSKFFLPIKESTT+TNR GEP
Sbjct: 272 LLYPYEQVQYKKVTSSKFFLPIKESTTSTNRNQEELSPSPPLLNPSTPQSTESQPTSGEP 331
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 1254
TPKRRK EPEA QSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT
Sbjct: 332 TTPKRRKGEPEAFQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 391
Query: 1255 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVFSWELVPDS 1389
PVHSRSSSPVPLTPSKEGS VFAGFEGRRTNEINEV SW+LVPDS
Sbjct: 392 PVHSRSSSPVPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDS 436
>ref|XP_002700487.1| PREDICTED: male-specific lethal 3 homolog (Drosophila) isoform 2 [Bos
taurus].
Length = 461
Score = 514 bits (1324), Expect = e-146
Identities = 270/377 (71%), Positives = 273/377 (72%)
Frame = +1
Query: 259 SWDRWAAEDHVLRDTDENXXXXXXXXXXXXXXXXSTGRKRKRCRLPGVDSVLKSLPAXXX 438
SWDRWAAEDHVLRDTDEN STGRKRKRCRLPGVDSVLKSLPA
Sbjct: 3 SWDRWAAEDHVLRDTDENRRLQRKLAKKAVARLRSTGRKRKRCRLPGVDSVLKSLPADEK 62
Query: 439 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPELHAKXXXXXXXXXXXXXXVL 618
PELH K VL
Sbjct: 63 DENDENSISSSSDSEEKDGEISEEGDTEEKTEVKEG--PELHTKKEMEERTITIEIPDVL 120
Query: 619 KKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPHANM 798
KKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHH +PHANM
Sbjct: 121 KKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVIPHANM 180
Query: 799 NVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTTN 978
NVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTT+
Sbjct: 181 NVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTTS 240
Query: 979 TNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEPATPKRRKAEPEALQSLRRSTRHSANCDR 1158
TNR GEP TPKRRK EPEA QSLRRSTRHSANCDR
Sbjct: 241 TNRNQEELSPSPPLLNPSTPQSTESQPTSGEPTTPKRRKGEPEAFQSLRRSTRHSANCDR 300
Query: 1159 LSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGFEGR 1338
LSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGS VFAGFEGR
Sbjct: 301 LSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSAVFAGFEGR 360
Query: 1339 RTNEINEVFSWELVPDS 1389
RTNEINEV SW+LVPDS
Sbjct: 361 RTNEINEVLSWKLVPDS 377
>ref|XP_002707478.1| PREDICTED: male-specific lethal 3 homolog (Drosophila) [Bos taurus].
Length = 461
Score = 514 bits (1324), Expect = e-146
Identities = 270/377 (71%), Positives = 273/377 (72%)
Frame = +1
Query: 259 SWDRWAAEDHVLRDTDENXXXXXXXXXXXXXXXXSTGRKRKRCRLPGVDSVLKSLPAXXX 438
SWDRWAAEDHVLRDTDEN STGRKRKRCRLPGVDSVLKSLPA
Sbjct: 3 SWDRWAAEDHVLRDTDENRRLQRKLAKKAVARLRSTGRKRKRCRLPGVDSVLKSLPADEK 62
Query: 439 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPELHAKXXXXXXXXXXXXXXVL 618
PELH K VL
Sbjct: 63 DENDENSISSSSDSEEKDGEISEEGDTEEKTEVKEG--PELHTKKEMEERTITIEIPDVL 120
Query: 619 KKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPHANM 798
KKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHH +PHANM
Sbjct: 121 KKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVIPHANM 180
Query: 799 NVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTTN 978
NVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTT+
Sbjct: 181 NVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTTS 240
Query: 979 TNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEPATPKRRKAEPEALQSLRRSTRHSANCDR 1158
TNR GEP TPKRRK EPEA QSLRRSTRHSANCDR
Sbjct: 241 TNRNQEELSPSPPLLNPSTPQSTESQPTSGEPTTPKRRKGEPEAFQSLRRSTRHSANCDR 300
Query: 1159 LSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGFEGR 1338
LSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGS VFAGFEGR
Sbjct: 301 LSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSAVFAGFEGR 360
Query: 1339 RTNEINEVFSWELVPDS 1389
RTNEINEV SW+LVPDS
Sbjct: 361 RTNEINEVLSWKLVPDS 377
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,908,723
Number of extensions: 1139253
Number of successful extensions: 3962
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3940
Number of HSP's successfully gapped: 8
Length of query: 463
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,174,046
Effective search space: 5060134422
Effective search space used: 5060134422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008339
(1391 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548862.2| PREDICTED: similar to Male-specific lethal 3-li... 581 e-166
>ref|XP_548862.2| PREDICTED: similar to Male-specific lethal 3-like 1 (MSL3-like 1)
(Male-specific lethal-3 homolog 1) [Canis familiaris].
Length = 522
Score = 581 bits (1497), Expect = e-166
Identities = 300/405 (74%), Positives = 303/405 (74%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
+IVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 34 KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVAR 93
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRK+KRCRLPGVDSVLKSLP
Sbjct: 94 LRSTGRKKKRCRLPGVDSVLKSLPVEEKDENDENSISSSSDDSSEEKDEEISEESDIEEK 153
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PELH K VLKKKLEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 154 PEVKEEPELHTKREMEERTITIEIPEVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 213
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 214 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 273
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQVQYKKVTSSKFFLPIKES TNTNR GEP
Sbjct: 274 LLYPYEQVQYKKVTSSKFFLPIKESATNTNRNQEELSPSPPLLNPSTPQSTESQPTTGEP 333
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 1254
ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT
Sbjct: 334 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 393
Query: 1255 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVFSWELVPDS 1389
PVHSRSSSPVPLTPSKEGS VFAGFEGRRTNEINEV SW+LVPDS
Sbjct: 394 PVHSRSSSPVPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDS 438
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,070,390
Number of extensions: 1175622
Number of successful extensions: 4051
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 357
Effective length of database: 15,340,888
Effective search space: 5476697016
Effective search space used: 5476697016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008339
(1391 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134973.1| PREDICTED: male-specific lethal 3 homolog [S... 589 e-168
>ref|XP_003134973.1| PREDICTED: male-specific lethal 3 homolog [Sus scrofa].
Length = 522
Score = 589 bits (1518), Expect = e-168
Identities = 305/405 (75%), Positives = 307/405 (75%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
+IVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 34 KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVAR 93
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRKRKRCRLPGVDSVLKSLPA
Sbjct: 94 LRSTGRKRKRCRLPGVDSVLKSLPAEEKDENDENSISSSSDDNSEEKDEEISEESDIEEK 153
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PELHAK VLKKKLEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 154 TETKEDPELHAKREMEERTITIEIPEVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 213
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 214 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 273
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQVQYKKVTSSKFFLPIKESTTNTNR GEP
Sbjct: 274 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRNQEELSPSPPLLNPSTPQSTESQPTTGEP 333
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 1254
ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT
Sbjct: 334 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 393
Query: 1255 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVFSWELVPDS 1389
PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEV SW+LVPDS
Sbjct: 394 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVLSWKLVPDS 438
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,525,662
Number of extensions: 727561
Number of successful extensions: 2560
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2548
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,804,438
Effective search space: 3178402118
Effective search space used: 3178402118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008339
(1391 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034962.2| male-specific lethal 3 homolog [Mus musculus]. 481 e-136
Alignment gi|NP_001157305.1| male-specific lethal 3-like 2 [Mus musculus]. 238 1e-62
>ref|NP_034962.2| male-specific lethal 3 homolog [Mus musculus].
Length = 466
Score = 481 bits (1239), Expect = e-136
Identities = 250/380 (65%), Positives = 267/380 (70%), Gaps = 3/380 (0%)
Frame = +1
Query: 259 SWDRWAAEDHVLRDTDENXXXXXXXXXXXXXXXXSTGRKRKRCRLPGVDSVLKSLPAXXX 438
SWDRWAAE+HVL DTDEN TG+K++RCRLPGVDSVLKS+P
Sbjct: 3 SWDRWAAEEHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEK 62
Query: 439 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPE---LHAKXXXXXXXXXXXXX 609
+ L ++
Sbjct: 63 SKNDENSVSSTCHESCGEKNGGIKEHRQRRIKVKAKAKKKVLSLRSRKEMDERTITIDIP 122
Query: 610 XVLKKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPH 789
VLKK+LEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAM H
Sbjct: 123 DVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMH 182
Query: 790 ANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKES 969
+MNVHY+PAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQ QYK+VTSSKFFLPIKES
Sbjct: 183 THMNVHYVPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKES 242
Query: 970 TTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEPATPKRRKAEPEALQSLRRSTRHSAN 1149
TT TNR GEPATPKRRKAEPEALQSLRRSTRHS N
Sbjct: 243 TTTTNRSQEELSPSPPLLNPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTN 302
Query: 1150 CDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGF 1329
CDRLSESS+SPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSP+PLTPSK+GS VFAGF
Sbjct: 303 CDRLSESSSSPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPIPLTPSKDGSAVFAGF 362
Query: 1330 EGRRTNEINEVFSWELVPDS 1389
EGRR NEINEV SW+LVPD+
Sbjct: 363 EGRRPNEINEVLSWKLVPDN 382
>ref|NP_001157305.1| male-specific lethal 3-like 2 [Mus musculus].
Length = 371
Score = 238 bits (606), Expect = 1e-62
Identities = 131/259 (50%), Positives = 163/259 (62%)
Frame = +1
Query: 613 VLKKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPHA 792
VL+++L DDCYYINRR+RLV+LPCQTN+ ILE YV+HF+ + + RP+ A P
Sbjct: 55 VLQQRLADDCYYINRRRRLVRLPCQTNVGAILECYVRHFSASVLALGDRRPQPQRAAP-- 112
Query: 793 NMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKEST 972
E++V LC+EM DGLRITFD+ LPLVLLYP EQ QY+ VTSS FF P +E
Sbjct: 113 ---------ERSVGLCREMADGLRITFDHALPLVLLYPQEQAQYEMVTSSTFFFPTEERA 163
Query: 973 TNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEPATPKRRKAEPEALQSLRRSTRHSANC 1152
++ R PA PKRR+AE EA ++ RRSTRHS +C
Sbjct: 164 SDAGR------SQEAPWPGPSPPQPSESQAVAGPAAPKRRRAEAEATRAPRRSTRHSTHC 217
Query: 1153 DRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGFE 1332
+E ASPQ KR S+PKLF HL+ KTPVHS + SP+ LTP KEGS +FAGFE
Sbjct: 218 HWQAEDRASPQAKR-------SVPKLFPHLQ-KTPVHSAAPSPIALTPGKEGSAMFAGFE 269
Query: 1333 GRRTNEINEVFSWELVPDS 1389
G T EINE+ SW+LVPD+
Sbjct: 270 G-TTEEINEILSWKLVPDN 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,157,619
Number of extensions: 981633
Number of successful extensions: 3496
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3463
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 358
Effective length of database: 12,463,779
Effective search space: 4462032882
Effective search space used: 4462032882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008339
(1391 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180199.1| male-specific lethal 3 homolog isoform e [Ho... 564 e-161
Alignment gi|NP_523353.2| male-specific lethal 3 homolog isoform a [Homo ... 563 e-160
Alignment gi|NP_523352.1| male-specific lethal 3 homolog isoform d [Homo ... 475 e-134
Alignment gi|NP_006791.2| male-specific lethal 3 homolog isoform c [Homo ... 449 e-126
>ref|NP_001180199.1| male-specific lethal 3 homolog isoform e [Homo sapiens].
Length = 509
Score = 564 bits (1454), Expect = e-161
Identities = 292/405 (72%), Positives = 299/405 (73%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 22 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVAR 81
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRK+KRCRLPGVDSVLK LP
Sbjct: 82 LRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKT 141
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PEL + VLKK+LEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 142 EVKEE-PELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILES 200
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHH MPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 201 YVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 260
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQ QYKKVTSSKFFLPIKES T+TNR GEP
Sbjct: 261 LLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEP 320
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 1254
ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT
Sbjct: 321 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 380
Query: 1255 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVFSWELVPDS 1389
PVHSRSSSP+PLTPSKEGS VFAGFEGRRTNEINEV SW+LVPD+
Sbjct: 381 PVHSRSSSPIPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDN 425
>ref|NP_523353.2| male-specific lethal 3 homolog isoform a [Homo sapiens].
Length = 521
Score = 563 bits (1450), Expect = e-160
Identities = 291/405 (71%), Positives = 299/405 (73%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
+IVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 34 KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVAR 93
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRK+KRCRLPGVDSVLK LP
Sbjct: 94 LRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKT 153
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PEL + VLKK+LEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 154 EVKEE-PELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILES 212
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHH MPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 213 YVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 272
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQ QYKKVTSSKFFLPIKES T+TNR GEP
Sbjct: 273 LLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEP 332
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 1254
ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT
Sbjct: 333 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKT 392
Query: 1255 PVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVFSWELVPDS 1389
PVHSRSSSP+PLTPSKEGS VFAGFEGRRTNEINEV SW+LVPD+
Sbjct: 393 PVHSRSSSPIPLTPSKEGSAVFAGFEGRRTNEINEVLSWKLVPDN 437
>ref|NP_523352.1| male-specific lethal 3 homolog isoform d [Homo sapiens].
Length = 416
Score = 475 bits (1223), Expect = e-134
Identities = 249/358 (69%), Positives = 254/358 (70%)
Frame = +1
Query: 175 QIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENXXXXXXXXXXXXXX 354
+IVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDEN
Sbjct: 34 KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVAR 93
Query: 355 XXSTGRKRKRCRLPGVDSVLKSLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 534
STGRK+KRCRLPGVDSVLK LP
Sbjct: 94 LRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKT 153
Query: 535 XXXXXXPELHAKXXXXXXXXXXXXXXVLKKKLEDDCYYINRRKRLVKLPCQTNIITILES 714
PEL + VLKK+LEDDCYYINRRKRLVKLPCQTNIITILES
Sbjct: 154 EVKEE-PELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILES 212
Query: 715 YVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 894
YVKHFAINAAFSANERPRHHH MPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV
Sbjct: 213 YVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLV 272
Query: 895 LLYPYEQVQYKKVTSSKFFLPIKESTTNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEP 1074
LLYPYEQ QYKKVTSSKFFLPIKES T+TNR GEP
Sbjct: 273 LLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEP 332
Query: 1075 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEK 1248
ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEK
Sbjct: 333 ATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEK 390
>ref|NP_006791.2| male-specific lethal 3 homolog isoform c [Homo sapiens].
Length = 355
Score = 449 bits (1154), Expect = e-126
Identities = 223/259 (86%), Positives = 228/259 (88%)
Frame = +1
Query: 613 VLKKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPHA 792
VLKK+LEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHH MPHA
Sbjct: 13 VLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHA 72
Query: 793 NMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKEST 972
NMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQ QYKKVTSSKFFLPIKES
Sbjct: 73 NMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKFFLPIKESA 132
Query: 973 TNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXGEPATPKRRKAEPEALQSLRRSTRHSANC 1152
T+TNR GEPATPKRRKAEPEALQSLRRSTRHSANC
Sbjct: 133 TSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKAEPEALQSLRRSTRHSANC 192
Query: 1153 DRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGFE 1332
DRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSP+PLTPSKEGS VFAGFE
Sbjct: 193 DRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPIPLTPSKEGSAVFAGFE 252
Query: 1333 GRRTNEINEVFSWELVPDS 1389
GRRTNEINEV SW+LVPD+
Sbjct: 253 GRRTNEINEVLSWKLVPDN 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,150,590
Number of extensions: 1158724
Number of successful extensions: 4162
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4131
Number of HSP's successfully gapped: 7
Length of query: 463
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,802,980
Effective search space: 5284663860
Effective search space used: 5284663860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008339
(1391 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 525 e-146
>Sscrofa_ChrX
|| Length = 144288218
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 985 aggaaccaggaggagctctcgccaagcccacctttgttgaatccgtccacaccacagtcc 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300384 aggaaccaggaggagctctcgccaagcccacctttgttgaatccgtccacaccacagtcc 9300443
Query: 1045 acggagagccagccaaccaccggcgagccagccacccccaagaggcgcaaagccgagccc 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300444 acggagagccagccaaccaccggcgagccagccacccccaagaggcgcaaagccgagccc 9300503
Query: 1105 gaagccttgcagtccctgaggcggtccacgcgccactccgccaactgcgacaggctgtct 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300504 gaagccttgcagtccctgaggcggtccacgcgccactccgccaactgcgacaggctgtct 9300563
Query: 1165 gagagcagcgcctctcctcagcccaagcgccggcagcaggacacgtcggccagcatgccc 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300564 gagagcagcgcctctcctcagcccaagcgccggcagcaggacacgtcggccagcatgccc 9300623
Query: 1225 aagctcttcctccacctggaaaaga 1249
|||||||||||||||||||||||||
Sbjct: 9300624 aagctcttcctccacctggaaaaga 9300648
Score = 438 bits (221), Expect = e-120
Identities = 235/242 (97%)
Strand = Plus / Plus
Query: 19 tggaattgaaaggaaaaatgtttcagccccgctctctgtctaaaaaaggagagaatgctt 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9294018 tggaattgaaaggaaaaatgtttcagccccgctctctgtctaaaaaaggagagaatgctt 9294077
Query: 79 tcttttcttttnnnnnnnggtcgatgatctagttttcctgatccagcttccaatattctg 138
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9294078 tcttttcttttaaaaaaaggtcgatgatctagttttcctgatccagcttccaatattctg 9294137
Query: 139 tatgttctgtcgtttgtggacaacatttcctggtttcagattgtcgatgttattgttggg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9294138 tatgttctgtcgtttgtggacaacatttcctggtttcagattgtcgatgttattgttggg 9294197
Query: 199 aaagacgaaaaaggcagaaagatcccagaatatctgatccattttaatggttggaacagg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9294198 aaagacgaaaaaggcagaaagatcccagaatatctgatccattttaatggttggaacagg 9294257
Query: 259 ag 260
||
Sbjct: 9294258 ag 9294259
Score = 321 bits (162), Expect = 6e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 666 gttagtgaaactcccctgccaaaccaacatcatcaccattttggaatcgtacgtgaagca 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297449 gttagtgaaactcccctgccaaaccaacatcatcaccattttggaatcgtacgtgaagca 9297508
Query: 726 ttttgctatcaatgcagccttttcggccaatgagaggcctcgtcaccatcacgctatgcc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297509 ttttgctatcaatgcagccttttcggccaatgagaggcctcgtcaccatcacgctatgcc 9297568
Query: 786 acatgccaacatgaatgtgcattatatcccagcagaaaagaa 827
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297569 acatgccaacatgaatgtgcattatatcccagcagaaaagaa 9297610
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 828 cgtcgacctttgtaaggaaatggtggatggattaagaataacctttgattacactctccc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9298412 cgtcgacctttgtaaggaaatggtggatggattaagaataacctttgattacactctccc 9298471
Query: 888 actggttttgctctacccgtatgaacaagttcagtataaaaaggtgacttcgtccaaatt 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9298472 actggttttgctctacccgtatgaacaagttcagtataaaaaggtgacttcgtccaaatt 9298531
Query: 948 ttttcttccgattaaggaaagtaccacgaacactaacagg 987
||||||||||||||||||||||||||||||||||||||||
Sbjct: 9298532 ttttcttccgattaaggaaagtaccacgaacactaacagg 9298571
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 552 cccagagctgcacgcgaaaagggagatggaagaaagaacaataactatagaaatccccga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9296778 cccagagctgcacgcgaaaagggagatggaagaaagaacaataactatagaaatccccga 9296837
Query: 612 agttctgaagaagaagcttgaggatgattgttattacatcaacagaaggaaacgg 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9296838 agttctgaagaagaagcttgaggatgattgttattacatcaacagaaggaaacgg 9296892
Score = 214 bits (108), Expect = 1e-52
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 1250 agacgcctgttcatagcagatcttcctcgcctgttcctctaacccccagcaaggaaggga 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9301288 agacgcctgttcatagcagatcttcctcgcctgttcctctaacccccagcaaggaaggga 9301347
Query: 1310 gcacggtgtttgctggctttgaaggccgaagaactaatgaaatcaatgaggt 1361
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9301348 gcacggtgtttgctggctttgaaggcagaagaactaatgaaatcaatgaggt 9301399
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 357 gagaagcacaggaagaaagaggaagcgctgcaggttgcctggggtggactctgtcttgaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9295069 gagaagcacaggaagaaagaggaagcgctgcaggttgcctggggtggactctgtcttgaa 9295128
Query: 417 aagcctccccgcggaagaaaaagatgaaaatgatgaaaact 457
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 9295129 aagcctccccgcggaagaaaaagatgaaaatgatgaaaact 9295169
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 259 agctgggatagatgggcagctgaagatcatgtccttcgtgataccgatgaaaatcggaga 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9294629 agctgggatagatgggcagctgaagatcatgtccttcgtgataccgatgaaaatcggaga 9294688
Query: 319 ttacagcgtaaattggcaagaaaagctgtagctcgcctg 357
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9294689 ttacagcgtaaattggcaagaaaagctgtagctcgcctg 9294727
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,025,999
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 8
Length of query: 1391
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1370
Effective length of database: 2,808,413,156
Effective search space: 3847526023720
Effective search space used: 3847526023720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)