Animal-Genome cDNA 20110601C-008343


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008343
         (1988 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [B...  1004   0.0  
Alignment   gi|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [B...   219   5e-57
Alignment   gi|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [...   194   3e-49
Alignment   gi|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype...   180   5e-45
Alignment   gi|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype...   180   5e-45
Alignment   gi|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype...   180   5e-45
Alignment   gi|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypepti...   180   5e-45
Alignment   gi|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [B...   172   8e-43
Alignment   gi|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [B...   172   1e-42
Alignment   gi|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype...   172   1e-42

>ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus].
          Length = 765

 Score = 1004 bits (2597), Expect = 0.0
 Identities = 535/635 (84%), Positives = 541/635 (85%), Gaps = 2/635 (0%)
 Frame = +2

Query: 71   MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
            ML+ELG I TIG                   GPIVLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1    MLSELGFIRTIGEDEDVQVEPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEK 60

Query: 251  EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
            EGMYDGSWAMADV+SQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSG S+          
Sbjct: 61   EGMYDGSWAMADVLSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEKEKEAKEGSE 120

Query: 431  XXXXXXXXXXXXXXXXXXXXXXXXX-ADENILTKADTLRVKERXXXXX-GQEAGGFFEDA 604
                                      ADENILTKADTL++KER      GQEAGGFFEDA
Sbjct: 121  PEEEEDLERKDVEASEDEESETDYSSADENILTKADTLKIKERKKKKKKGQEAGGFFEDA 180

Query: 605  SQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXX 784
            SQYDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI             
Sbjct: 181  SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAA 240

Query: 785  XXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS 964
              LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS
Sbjct: 241  FALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS 300

Query: 965  QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 1144
            QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM
Sbjct: 301  QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360

Query: 1145 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1324
            CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE
Sbjct: 361  CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 420

Query: 1325 AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD 1504
            AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD
Sbjct: 421  AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD 480

Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
            EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH             SVSLVGEEE
Sbjct: 481  EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540

Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 1864
            RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN
Sbjct: 541  RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 600

Query: 1865 TAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            TAQRLLEKGKEAPNPEPERSWFQTKEERKKEK A+
Sbjct: 601  TAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAK 635


>ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus].
          Length = 457

 Score =  219 bits (559), Expect = 5e-57
 Identities = 133/423 (31%), Positives = 223/423 (52%)
 Frame = +2

Query: 596  EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXX 775
            + A + +E  +F+D+ ++  L +A   +G+ +PT IQ   IP+ L G+DI          
Sbjct: 17   QTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGK 76

Query: 776  XXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 955
                 LP+L  L+  P++      LVL PTREL  Q+    + L     +   + VGG+D
Sbjct: 77   TGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 133

Query: 956  VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 1135
              SQ  AL   P I+IATPGRLIDHL N   F+L +++ L++DEADR+L+  FE ++ +I
Sbjct: 134  SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 193

Query: 1136 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 1315
            +++    R+T LFSATMT +V+ L   +LKNPV+  V+S       L+Q ++ I P++  
Sbjct: 194  LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PSK-- 250

Query: 1316 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
             ++  +  +L     +  M+F  T     R  +LL  +G     LHG +SQ++RL +L +
Sbjct: 251  FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 310

Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
            FK +   IL+ATDVA+RGLDI  V  V+NF +P   K Y+H             +++ V 
Sbjct: 311  FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370

Query: 1676 EEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEA 1855
            + + ++ + I       +       D ++   +++ + ++     L+   E+K+  + + 
Sbjct: 371  QYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDV 430

Query: 1856 QIN 1864
              N
Sbjct: 431  GDN 433


>ref|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus].
          Length = 876

 Score =  194 bits (492), Expect = 3e-49
 Identities = 147/449 (32%), Positives = 216/449 (48%), Gaps = 21/449 (4%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            FQ M LS P+ K I   G+K PTPIQ+  IP+ L GKD+               +P+ ER
Sbjct: 98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L     Q    R L+L PTREL +Q    TK+L +F  + T L +GG  ++ Q AAL   
Sbjct: 158  LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 216

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 1168
            PDI+IATPGRL+ H+    +  L S+E ++ DEADR+ +  F EQ++EII       QT+
Sbjct: 217  PDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTV 275

Query: 1169 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 1348
            LFSAT+   + + A   L  PV I ++ ++ +   L+  F  +R     D +A V   L+
Sbjct: 276  LFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVRE----DAKAAVLLHLL 331

Query: 1349 RTFT---DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 1519
            R      D  ++F  TK  A  +  LL   G+    ++  L QT R   L RF   +   
Sbjct: 332  RNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSA 391

Query: 1520 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLK 1699
            L+ TD+AARGLDI  +  VIN++ P   K ++H             + SLV  +E   L 
Sbjct: 392  LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLL 451

Query: 1700 EI-------VKAAKAP-----------VKARILPQDVILKFRDKIEKMEKDVYAVLQLEA 1825
            ++       +  A+ P           V  R+ PQ V+          ++D      LEA
Sbjct: 452  DLHLFLGRALTLARPPEEPSGTEGGDGVLGRV-PQGVV---------DDEDCGLRTSLEA 501

Query: 1826 EEKEMQKSEAQINTAQRLLEKGKEAPNPE 1912
               E++      N AQ+   + + AP+PE
Sbjct: 502  -SLELRGLSRVANNAQQQYVRSRPAPSPE 529


>ref|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
            taurus].
          Length = 671

 Score =  180 bits (456), Expect = 5e-45
 Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
 Frame = +2

Query: 587  GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
            G FED S +D   +  + N     LKAI  MGF   T IQ   I   L G+D+       
Sbjct: 173  GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227

Query: 767  XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
                    +P +E ++   + PR    T VL+L PTREL +Q   V K+L      T  L
Sbjct: 228  SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285

Query: 938  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
             +GG +  ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FE
Sbjct: 286  IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345

Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
            E++K+II++    RQTMLFSAT T +V+DLA +SL K P+ + V+ +   A    L Q +
Sbjct: 346  EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405

Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
            + + P+ +  R  ++   L +     +M+F  + K     + LL  + L V  +HG   Q
Sbjct: 406  V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462

Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
             +R     +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H          
Sbjct: 463  NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522

Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
                  L+   E       +K +K P+         I   + ++EK+ +  Y
Sbjct: 523  GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574


>ref|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus].
          Length = 671

 Score =  180 bits (456), Expect = 5e-45
 Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
 Frame = +2

Query: 587  GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
            G FED S +D   +  + N     LKAI  MGF   T IQ   I   L G+D+       
Sbjct: 173  GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227

Query: 767  XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
                    +P +E ++   + PR    T VL+L PTREL +Q   V K+L      T  L
Sbjct: 228  SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285

Query: 938  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
             +GG +  ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FE
Sbjct: 286  IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345

Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
            E++K+II++    RQTMLFSAT T +V+DLA +SL K P+ + V+ +   A    L Q +
Sbjct: 346  EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405

Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
            + + P+ +  R  ++   L +     +M+F  + K     + LL  + L V  +HG   Q
Sbjct: 406  V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462

Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
             +R     +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H          
Sbjct: 463  NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522

Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
                  L+   E       +K +K P+         I   + ++EK+ +  Y
Sbjct: 523  GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574


>ref|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
            taurus].
          Length = 671

 Score =  180 bits (456), Expect = 5e-45
 Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
 Frame = +2

Query: 587  GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
            G FED S +D   +  + N     LKAI  MGF   T IQ   I   L G+D+       
Sbjct: 173  GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227

Query: 767  XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
                    +P +E ++   + PR    T VL+L PTREL +Q   V K+L      T  L
Sbjct: 228  SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285

Query: 938  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
             +GG +  ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FE
Sbjct: 286  IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345

Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
            E++K+II++    RQTMLFSAT T +V+DLA +SL K P+ + V+ +   A    L Q +
Sbjct: 346  EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405

Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
            + + P+ +  R  ++   L +     +M+F  + K     + LL  + L V  +HG   Q
Sbjct: 406  V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462

Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
             +R     +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H          
Sbjct: 463  NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522

Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
                  L+   E       +K +K P+         I   + ++EK+ +  Y
Sbjct: 523  GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574


>ref|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 1 [Bos
            taurus].
          Length = 671

 Score =  180 bits (456), Expect = 5e-45
 Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
 Frame = +2

Query: 587  GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
            G FED S +D   +  + N     LKAI  MGF   T IQ   I   L G+D+       
Sbjct: 173  GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227

Query: 767  XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
                    +P +E ++   + PR    T VL+L PTREL +Q   V K+L      T  L
Sbjct: 228  SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285

Query: 938  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
             +GG +  ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FE
Sbjct: 286  IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345

Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
            E++K+II++    RQTMLFSAT T +V+DLA +SL K P+ + V+ +   A    L Q +
Sbjct: 346  EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405

Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
            + + P+ +  R  ++   L +     +M+F  + K     + LL  + L V  +HG   Q
Sbjct: 406  V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462

Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
             +R     +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H          
Sbjct: 463  NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522

Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
                  L+   E       +K +K P+         I   + ++EK+ +  Y
Sbjct: 523  GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574


>ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus].
          Length = 876

 Score =  172 bits (437), Expect = 8e-43
 Identities = 117/392 (29%), Positives = 187/392 (47%), Gaps = 2/392 (0%)
 Frame = +2

Query: 614  DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
            +E   F D  LS+  LK +    ++  T IQK  I + L GKD+               +
Sbjct: 66   NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125

Query: 794  PVLERLI-YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
            PVLE L   +   A    VL++ PTREL  Q   V +++ +    +  L +GG D+K + 
Sbjct: 126  PVLEALYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 971  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
              +    +IL+ TPGRL+ H+     FH +++++L+LDEADR+LD  F + M  II    
Sbjct: 186  ERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLP 244

Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
              RQT+LFSAT T  VKDLA +SLKNP  ++V+     +     E   I    +     +
Sbjct: 245  KKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVL 304

Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRFKDE 1507
             + L        ++ F+  K+  +   +   L  G+ +  LHG   Q +R+E    F  +
Sbjct: 305  YSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRK 364

Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
            +  +L ATD+AARGLD   V  V+ F  P     Y+H             ++ ++   E 
Sbjct: 365  RAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE 424

Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIE 1783
            K + + +   K PVK   +  + ++  + K+E
Sbjct: 425  KGMVQQLLQKKVPVKEIKINPEKLIDVQKKLE 456


>ref|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Bos taurus].
          Length = 620

 Score =  172 bits (436), Expect = 1e-42
 Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 4/380 (1%)
 Frame = +2

Query: 623  LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVL 802
            + F+       L + +   G++ PTPIQ   IPVGLLG+D+               LPV+
Sbjct: 204  VDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263

Query: 803  ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQ-FCSITTCLAVGGLDVKSQEAAL 979
             R +    Q+     LVL PTREL IQ+    K+L      + T L VGGL    Q   L
Sbjct: 264  LRAL---SQSKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRL 320

Query: 980  RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 1159
            R    ++IATPGRL+D +    S  L SI+++++DEAD ML   F++Q+ +++    H  
Sbjct: 321  RQRIQVIIATPGRLLDIIKQ-RSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDC 379

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+L SAT+   V+ LA   L++PV I         P +RQ  + +    E  ++  +  
Sbjct: 380  QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVE---EPAKKKKLFE 436

Query: 1340 LL--MRTFTDHVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
            +L   + F   V++F   K  A  +   +  + GL+   +H + +Q +R   L+   +  
Sbjct: 437  ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGD 496

Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
             D++V+T V  RGLD+ GVK V+NF MP+++  YVH             +++ +    ++
Sbjct: 497  YDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKR 556

Query: 1691 MLKEIVKAAKAPVKARILPQ 1750
            +  +I K  K P  + + PQ
Sbjct: 557  LFWDIAKRVK-PTGSLLPPQ 575


>ref|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos
            taurus].
          Length = 620

 Score =  172 bits (436), Expect = 1e-42
 Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 4/380 (1%)
 Frame = +2

Query: 623  LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVL 802
            + F+       L + +   G++ PTPIQ   IPVGLLG+D+               LPV+
Sbjct: 204  VDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263

Query: 803  ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQ-FCSITTCLAVGGLDVKSQEAAL 979
             R +    Q+     LVL PTREL IQ+    K+L      + T L VGGL    Q   L
Sbjct: 264  LRAL---SQSKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRL 320

Query: 980  RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 1159
            R    ++IATPGRL+D +    S  L SI+++++DEAD ML   F++Q+ +++    H  
Sbjct: 321  RQRIQVIIATPGRLLDIIKQ-RSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDC 379

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+L SAT+   V+ LA   L++PV I         P +RQ  + +    E  ++  +  
Sbjct: 380  QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVE---EPAKKKKLFE 436

Query: 1340 LL--MRTFTDHVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
            +L   + F   V++F   K  A  +   +  + GL+   +H + +Q +R   L+   +  
Sbjct: 437  ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGD 496

Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
             D++V+T V  RGLD+ GVK V+NF MP+++  YVH             +++ +    ++
Sbjct: 497  YDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKR 556

Query: 1691 MLKEIVKAAKAPVKARILPQ 1750
            +  +I K  K P  + + PQ
Sbjct: 557  LFWDIAKRVK-PTGSLLPPQ 575


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,560,291
Number of extensions: 2087576
Number of successful extensions: 8645
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 8466
Number of HSP's successfully gapped: 56
Length of query: 662
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,074,782
Effective search space: 7783354446
Effective search space used: 7783354446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008343
         (1988 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RN...   994   0.0  
Alignment   gi|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RN...   967   0.0  
Alignment   gi|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo...   222   9e-58
Alignment   gi|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo...   195   1e-49
Alignment   gi|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicas...   181   3e-45
Alignment   gi|XP_850776.1| PREDICTED: similar to DEAD-box protein 54 (ATP-...   176   6e-44
Alignment   gi|XP_543405.2| PREDICTED: similar to DEAD-box protein 54 (ATP-...   175   1e-43
Alignment   gi|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo...   174   4e-43
Alignment   gi|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo...   172   8e-43
Alignment   gi|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chr...   172   1e-42

>ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
            (DEAD-box protein 27) isoform 1 [Canis familiaris].
          Length = 765

 Score =  994 bits (2570), Expect = 0.0
 Identities = 527/635 (82%), Positives = 537/635 (84%), Gaps = 2/635 (0%)
 Frame = +2

Query: 71   MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
            ML ELGLIGTIG                   GP+VLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1    MLEELGLIGTIGEDDDVPGHPESDSGDEEEEGPVVLGRKQKALQKNRSADFNPDFVFTEK 60

Query: 251  EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
            EG YDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSG S+          
Sbjct: 61   EGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSEL 120

Query: 431  XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
                                     ADENILTKADTL+VKER     GQE GGFFEDASQ
Sbjct: 121  EEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKGQETGGFFEDASQ 180

Query: 611  YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
            YDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI               
Sbjct: 181  YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 240

Query: 791  LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
            LPVLERLIYKPRQ+PVTRVLVLVPTRELGIQVHSVTKQLAQFC+ITTCLAVGGLDVKSQE
Sbjct: 241  LPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQE 300

Query: 971  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
            AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS
Sbjct: 301  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 360

Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
            HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEF+RIRPNREGDREAI
Sbjct: 361  HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAI 420

Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
            VAALL RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ
Sbjct: 421  VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 480

Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
            IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH             SVSLVGEEERK
Sbjct: 481  IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERK 540

Query: 1691 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 1870
            MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKE+Q+SEAQINTA
Sbjct: 541  MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTA 600

Query: 1871 QRLL--EKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            +RLL  EKGKEA N EPERSWFQTKEERKKEK A+
Sbjct: 601  KRLLEREKGKEASNHEPERSWFQTKEERKKEKIAK 635


>ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
            (DEAD-box protein 27) isoform 2 [Canis familiaris].
          Length = 763

 Score =  967 bits (2500), Expect = 0.0
 Identities = 517/635 (81%), Positives = 528/635 (83%), Gaps = 2/635 (0%)
 Frame = +2

Query: 71   MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
            ML ELGLIGTIG                   GP+VLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1    MLEELGLIGTIGEDDDVPGHPESDSGDEEEEGPVVLGRKQKALQKNRSADFNPDFVFTEK 60

Query: 251  EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
            EG YDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSG S+          
Sbjct: 61   EGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSEL 120

Query: 431  XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
                                     ADENILTKADTL+VKER     GQE GGFFEDASQ
Sbjct: 121  EEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKGQETGGFFEDASQ 180

Query: 611  YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
            YDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI               
Sbjct: 181  YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 240

Query: 791  LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
            LPVLERLIYKPRQ+PVTRVLVLVPTRELGIQVHSVTKQLA    +    + GGLDVKSQE
Sbjct: 241  LPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAHH--LAGLFSAGGLDVKSQE 298

Query: 971  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
            AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS
Sbjct: 299  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 358

Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
            HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEF+RIRPNREGDREAI
Sbjct: 359  HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAI 418

Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
            VAALL RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ
Sbjct: 419  VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 478

Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
            IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH             SVSLVGEEERK
Sbjct: 479  IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERK 538

Query: 1691 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 1870
            MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKE+Q+SEAQINTA
Sbjct: 539  MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTA 598

Query: 1871 QRLL--EKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            +RLL  EKGKEA N EPERSWFQTKEERKKEK A+
Sbjct: 599  KRLLEREKGKEASNHEPERSWFQTKEERKKEKIAK 633


>ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
            isoform 1 isoform 1 [Canis familiaris].
          Length = 456

 Score =  222 bits (566), Expect = 9e-58
 Identities = 135/423 (31%), Positives = 225/423 (53%)
 Frame = +2

Query: 596  EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXX 775
            + A Q +E  +F+D+ ++  L +A   +G+ +PT IQ   IP+ L G+DI          
Sbjct: 15   QPAVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGK 74

Query: 776  XXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 955
                 LP+L  L+  P++      LVL PTREL  Q+    + L     + + + VGG+D
Sbjct: 75   TGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGID 131

Query: 956  VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 1135
              SQ  AL   P I+IATPGRLIDHL N   F+L +++ L++DEADR+L+  FE ++ +I
Sbjct: 132  SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 191

Query: 1136 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 1315
            +++    R+T LFSATMT +V+ L   +LKNPV+  V+S       L+Q ++ I P++  
Sbjct: 192  LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PSK-- 248

Query: 1316 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
             ++  +  +L     +  M+F  T     R  +LL  +G     LHG +SQ++RL +L +
Sbjct: 249  FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 308

Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
            FK +   IL+ATDVA+RGLDI  V  V+NF +P   K Y+H             +++ V 
Sbjct: 309  FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368

Query: 1676 EEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEA 1855
            + + ++ + I       +       D ++   +++ + ++     L+   E+K+  + +A
Sbjct: 369  QYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRTREDA 428

Query: 1856 QIN 1864
              N
Sbjct: 429  GDN 431


>ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
            isoform 1 [Canis familiaris].
          Length = 488

 Score =  195 bits (496), Expect = 1e-49
 Identities = 133/452 (29%), Positives = 226/452 (50%), Gaps = 7/452 (1%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            F ++ LS  L++    +G KQPTP+Q  CIP  L G+D                LP+L++
Sbjct: 4    FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L   P        LVL PTREL  Q+    + L +   +  C+ VGG+D+ +Q   L   
Sbjct: 64   LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
            P ++IATPGRL DHL +  +F +  I  L++DEADR+L++    F   ++ I+      R
Sbjct: 121  PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+LFSAT+TD +K+L  ++   P      +       L Q ++ +    E  ++A +  
Sbjct: 181  QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLV---PEKVKDAYLVH 237

Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
            L+     +H    +++FT T K    + ++L         LH  + Q +R  AL +FK  
Sbjct: 238  LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297

Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
               IL+ATDVA+RGLDI  V+ VIN   P   K Y+H             +++LV + + 
Sbjct: 298  IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
             ++  I +  K  ++   + +  +L+   ++  + ++    ++LEA   + +K   +IN 
Sbjct: 358  HLVHAIEEQIKKQLEELSVEEAKVLQILTQVNVVRRE--CEIKLEAANFDEKK---EINK 412

Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
             ++L+ +GK+ P+ E +R     K ++K  +F
Sbjct: 413  RKQLILEGKD-PDLEAKRKAELAKIKQKNRRF 443


>ref|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicase DDX18 (DEAD-box
            protein 18) (Myc-regulated DEAD-box protein) (MrDb)
            [Canis familiaris].
          Length = 669

 Score =  181 bits (458), Expect = 3e-45
 Identities = 128/404 (31%), Positives = 203/404 (50%), Gaps = 8/404 (1%)
 Frame = +2

Query: 617  ENLSFQDMN--LSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
            E+ SF  ++  ++   LKAI  MGF   T IQ   I   L G+D+               
Sbjct: 174  EDTSFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 233

Query: 791  LPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
            +P +E ++   + PR    T VL+L PTREL +Q   V K+L  +   T  L +GG +  
Sbjct: 234  IPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRS 291

Query: 962  SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 1141
            ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FEE++K+II+
Sbjct: 292  AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 351

Query: 1142 MCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEFIRIRPNRE 1312
            +    RQTMLFSAT T +V+DLA +SL K P+ + V+ +   A    L Q ++ + P+ +
Sbjct: 352  LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV-VCPSEK 410

Query: 1313 GDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 1492
              R  ++   L +     +M+F  + K     + LL  + L V  +HG   Q +R     
Sbjct: 411  --RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFF 468

Query: 1493 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLV 1672
            +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H                L+
Sbjct: 469  QFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLI 528

Query: 1673 GEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
               E       +K +K P+         I   + ++EK+ +  Y
Sbjct: 529  LRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 572


>ref|XP_850776.1| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA helicase
            DP97) isoform 3 [Canis familiaris].
          Length = 889

 Score =  176 bits (447), Expect = 6e-44
 Identities = 139/451 (30%), Positives = 211/451 (46%), Gaps = 23/451 (5%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            FQ M LS P+ K I   G+K PTPIQ+  IPV L GKD+               +P+ ER
Sbjct: 98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L     Q    R L+L PTREL +Q    TK+L +F  + T L +GG  ++ Q AAL   
Sbjct: 158  LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIE--------VLILDEADRMLDEYFEEQMKEIIRM 1144
            PDI+IATPGRL+ H+    +  L S+E        +L      R+ +  F EQ++EII  
Sbjct: 217  PDIIIATPGRLV-HVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGR 275

Query: 1145 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1324
                 QT+LFSAT+   + + A   L  PV I ++ +  +   L+  F  +R     D +
Sbjct: 276  LPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVRE----DTK 331

Query: 1325 AIVAALLMRTFT---DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
            A V   L+RT     D  ++F  TK  A  +  LL   G+    ++  L QT R   L +
Sbjct: 332  AAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAK 391

Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
            F   +   L+ TD+AARGLDI  +  VIN++ P   K ++H             + SLV 
Sbjct: 392  FTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 451

Query: 1676 EEERKMLKEI----------VKAAKAPVKARILPQDVILKF--RDKIEKMEKDVYAVLQL 1819
             +E   L ++           +  + P   ++L  D +L    +  ++  E  + ++L  
Sbjct: 452  PDEVPYLLDLHLFLGRALTPARPHEEPSVRKLLGVDGVLGRVPQSVVDDEESGLQSIL-- 509

Query: 1820 EAEEKEMQKSEAQINTAQRLLEKGKEAPNPE 1912
                 E+       + AQ+   + + AP+PE
Sbjct: 510  -TSSLELGGLSRVADNAQQQYVRSRPAPSPE 539


>ref|XP_543405.2| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA helicase
            DP97) isoform 1 [Canis familiaris].
          Length = 884

 Score =  175 bits (444), Expect = 1e-43
 Identities = 126/370 (34%), Positives = 181/370 (48%), Gaps = 11/370 (2%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            FQ M LS P+ K I   G+K PTPIQ+  IPV L GKD+               +P+ ER
Sbjct: 98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L     Q    R L+L PTREL +Q    TK+L +F  + T L +GG  ++ Q AAL   
Sbjct: 158  LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIE--------VLILDEADRMLDEYFEEQMKEIIRM 1144
            PDI+IATPGRL+ H+    +  L S+E        +L      R+ +  F EQ++EII  
Sbjct: 217  PDIIIATPGRLV-HVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGR 275

Query: 1145 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1324
                 QT+LFSAT+   + + A   L  PV I ++ +  +   L+  F  +R     D +
Sbjct: 276  LPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVRE----DTK 331

Query: 1325 AIVAALLMRTFT---DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
            A V   L+RT     D  ++F  TK  A  +  LL   G+    ++  L QT R   L +
Sbjct: 332  AAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAK 391

Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
            F   +   L+ TD+AARGLDI  +  VIN++ P   K ++H             + SLV 
Sbjct: 392  FTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 451

Query: 1676 EEERKMLKEI 1705
             +E   L ++
Sbjct: 452  PDEVPYLLDL 461


>ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
            isoform 10 [Canis familiaris].
          Length = 812

 Score =  174 bits (440), Expect = 4e-43
 Identities = 123/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            S++D +L   +L+ I   G+K+PTPIQ+  IP+GL  +DI               +P+L 
Sbjct: 392  SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLL 451

Query: 806  RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 985
             LI +  Q P    ++L PTREL  Q+   T +  +   I T   +GG+  + Q   LR 
Sbjct: 452  TLIEESDQGPYA--IILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 509

Query: 986  APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII--------- 1138
              +I+IATPGRLID L N     LS    ++LDEADRM+D  FE  +++I+         
Sbjct: 510  GCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 568

Query: 1139 ----------RMCSH-------HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA 1267
                      +M ++       +RQT++F+ATM   V+ LA   L+ P  +++ S     
Sbjct: 569  PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 628

Query: 1268 PFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGE 1447
              + Q+   +    E ++   + A+L + F   +++F   KK    +   L  MG     
Sbjct: 629  ERVEQKVFLM---SESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACT 685

Query: 1448 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXX 1627
            LHG   Q QR  AL   K    DILVATDVA RG+DI+ V  V+N+ M   I+ Y+H   
Sbjct: 686  LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 745

Query: 1628 XXXXXXXXXXSVSLVGEEERKMLKEIVKA-AKAPVKA 1735
                      +++ + +E+  +  E+ +A  ++PV +
Sbjct: 746  RTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSS 782


>ref|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
            [Canis familiaris].
          Length = 871

 Score =  172 bits (437), Expect = 8e-43
 Identities = 118/393 (30%), Positives = 188/393 (47%), Gaps = 3/393 (0%)
 Frame = +2

Query: 614  DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
            +E   F D  LS+  LK +    ++  T IQK  I + L GKD+               +
Sbjct: 66   NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125

Query: 794  PVLERLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ 967
            PVLE L Y+ +        VL++ PTREL  Q   V +++ +    +  L +GG D+K +
Sbjct: 126  PVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query: 968  EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 1147
               +    +IL+ TPGRL+ H+     FH +++++L+LDEADR+LD  F + M  II   
Sbjct: 185  AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query: 1148 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 1327
               RQT+LFSAT T  VKDLA +SLKNP  I+V+     +     E   I    +     
Sbjct: 244  PKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISV 303

Query: 1328 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRFKD 1504
            + + L        ++ F+  K+  +   +   L  G+ +  LHG   Q +R+E    F  
Sbjct: 304  LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363

Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
            ++  +L ATD+AARGLD   V  V+ F  P     Y+H             ++ ++   E
Sbjct: 364  KRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423

Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIE 1783
             K + + +   K PVK   +  + ++  + K+E
Sbjct: 424  EKGMVQQLLQKKVPVKEIKINPEKLIDVQKKLE 456


>ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
            (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
            isoform 12 [Canis familiaris].
          Length = 653

 Score =  172 bits (435), Expect = 1e-42
 Identities = 118/374 (31%), Positives = 184/374 (49%), Gaps = 13/374 (3%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 181  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 806  RL--------IYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
            ++        +   +Q P++  LVL PTREL +Q++   ++ +    +  C+  GG D+ 
Sbjct: 241  QIYSDGPGEALRAMKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 298

Query: 962  SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 1141
             Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  FE Q++ I+ 
Sbjct: 299  QQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 357

Query: 1142 MCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNR 1309
              +      R TM+FSAT   E++ LA   L   + + V      +  + Q+ + +    
Sbjct: 358  QDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVE--- 414

Query: 1310 EGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 1486
            E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+ SQ  R EA
Sbjct: 415  ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 474

Query: 1487 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVS 1666
            L +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH             + S
Sbjct: 475  LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 534

Query: 1667 LVGEEERKMLKEIV 1708
               E    + K+++
Sbjct: 535  FFNERNINITKDLL 548


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,853,482
Number of extensions: 2153641
Number of successful extensions: 9404
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 8954
Number of HSP's successfully gapped: 145
Length of query: 662
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 553
Effective length of database: 15,240,880
Effective search space: 8428206640
Effective search space used: 8428206640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008343
         (1988 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP...  1016   0.0  
Alignment   gi|XP_003360085.1| PREDICTED: probable ATP-dependent RNA helica...   534   e-152
Alignment   gi|XP_003360087.1| PREDICTED: hypothetical protein LOC100626268...   272   6e-73
Alignment   gi|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helica...   215   8e-56
Alignment   gi|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helica...   194   1e-49
Alignment   gi|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helica...   194   1e-49
Alignment   gi|XP_001927639.2| PREDICTED: ATP-dependent RNA helicase DDX18 ...   178   1e-44
Alignment   gi|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X ...   169   5e-42
Alignment   gi|XP_003360320.1| PREDICTED: ATP-dependent RNA helicase DDX3X ...   169   5e-42
Alignment   gi|XP_003360577.1| PREDICTED: ATP-dependent RNA helicase DDX3X-...   168   9e-42

>ref|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
            DDX27-like, partial [Sus scrofa].
          Length = 757

 Score = 1016 bits (2626), Expect = 0.0
 Identities = 547/657 (83%), Positives = 548/657 (83%), Gaps = 3/657 (0%)
 Frame = +2

Query: 8    RGNLRARQRAGPASGSGCFGNMLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRK 187
            RGNLRARQRAGPASGSGCFGNMLAELGLIGTIG                   GPIVLGRK
Sbjct: 1    RGNLRARQRAGPASGSGCFGNMLAELGLIGTIGEDDEVPVEPETDSEDEEEEGPIVLGRK 60

Query: 188  QKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKT 367
            QKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKT
Sbjct: 61   QKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKT 120

Query: 368  EDKEAKSGNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRV 547
            EDKEAKSGNSD                                   ADENILTKADTLRV
Sbjct: 121  EDKEAKSGNSDEKEVKEGSEPEEQEDLEGKDEEGSEGEESETDYSSADENILTKADTLRV 180

Query: 548  KERXXXXXGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVG 727
            KER     GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVG
Sbjct: 181  KERKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVG 240

Query: 728  LLGKDIXXXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL 907
            LLGKDI               LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL
Sbjct: 241  LLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL 300

Query: 908  AQFCSITTCLAVGGLDVKSQEAALRAAP--DILIATPGRLIDHLHNCPSFHLSSIEVLIL 1081
            AQF      L  GGLDVKSQEAALRAAP  DILIATPGRLIDHLHNCPSFHLSSIEVLIL
Sbjct: 301  AQFXXXXXXLFAGGLDVKSQEAALRAAPXPDILIATPGRLIDHLHNCPSFHLSSIEVLIL 360

Query: 1082 DEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 1261
            DEADRMLDEYFEEQMKEIIRMCS HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD
Sbjct: 361  DEADRMLDEYFEEQMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 420

Query: 1262 VAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV 1441
            VAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV
Sbjct: 421  VAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV 480

Query: 1442 GELHGNLSQTQR-LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 1618
            GELHGNLSQTQR LEAL RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH
Sbjct: 481  GELHGNLSQTQRXLEALWRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 540

Query: 1619 XXXXXXXXXXXXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD 1798
                         SVSL        LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD
Sbjct: 541  RVGRTARAGRAGRSVSLXXXXXXXXLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD 600

Query: 1799 VYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            VYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK A+
Sbjct: 601  VYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAK 657


>ref|XP_003360085.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Sus
            scrofa].
          Length = 421

 Score =  534 bits (1375), Expect = e-152
 Identities = 276/291 (94%), Positives = 277/291 (95%)
 Frame = +2

Query: 1097 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFL 1276
            MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFL
Sbjct: 1    MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFL 60

Query: 1277 RQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG 1456
            RQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG
Sbjct: 61   RQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG 120

Query: 1457 NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXX 1636
            NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH      
Sbjct: 121  NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTA 180

Query: 1637 XXXXXXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQ 1816
                   SVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQ
Sbjct: 181  RAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQ 240

Query: 1817 LEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            LEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK A+
Sbjct: 241  LEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAK 291


>ref|XP_003360087.1| PREDICTED: hypothetical protein LOC100626268 [Sus scrofa].
          Length = 562

 Score =  272 bits (695), Expect = 6e-73
 Identities = 151/217 (69%), Positives = 153/217 (70%)
 Frame = +2

Query: 71  MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
           MLAELGLIGTIG                   GPIVLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1   MLAELGLIGTIGEDDEVPVEPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEK 60

Query: 251 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
           EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSD          
Sbjct: 61  EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDEKEVKEGSEP 120

Query: 431 XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
                                    ADENI  ++   RVKER     GQEAGGFFEDASQ
Sbjct: 121 EEQEDLEGKDEEGSEGEESETDYSSADENIPHQS---RVKERKKKKKGQEAGGFFEDASQ 177

Query: 611 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP 721
           YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP
Sbjct: 178 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP 214


>ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
            scrofa].
          Length = 473

 Score =  215 bits (547), Expect = 8e-56
 Identities = 126/341 (36%), Positives = 194/341 (56%)
 Frame = +2

Query: 596  EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXX 775
            + A + +E  +F+D+ ++  L +A   +G+ +PT IQ   IP+ L G+DI          
Sbjct: 68   QTAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGK 127

Query: 776  XXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 955
                 LP+L  L+  P++      LVL PTREL  Q+    + L     +   + VGG+D
Sbjct: 128  TGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 184

Query: 956  VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 1135
              SQ  AL   P I+IATPGRLIDHL N   F+L +++ L++DEADR+L+  FE ++ +I
Sbjct: 185  SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 244

Query: 1136 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 1315
            +++    R+T LFSATMT +V+ L   +LKNPV+  V+S       L+Q ++ I P++  
Sbjct: 245  LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PSK-- 301

Query: 1316 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
             ++  +  +L     +  M+F  T     R  +LL  +G     LHG +SQ++RL +L +
Sbjct: 302  FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 361

Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 1618
            FK +   IL+ATDVA+RGLDI  V  V+NF +P   K Y+H
Sbjct: 362  FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 402


>ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
            scrofa].
          Length = 483

 Score =  194 bits (494), Expect = 1e-49
 Identities = 132/452 (29%), Positives = 227/452 (50%), Gaps = 7/452 (1%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            F ++ LS  L++    +G KQPTP+Q  CIP  L G+D                LP+L++
Sbjct: 4    FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L   P        LVL PTREL  Q+    + L +   +  C+ VGG+D+ +Q   L   
Sbjct: 64   LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
            P ++IATPGRL DHL +  +F +  I  L++DEADR+L++    F   ++ I+      R
Sbjct: 121  PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+LFSAT+TD +++L S++   P      +       L Q ++ +    E  ++A +  
Sbjct: 181  QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLV---PEKVKDAYLVH 237

Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
            L+     +H    +++FT T K    + ++L         LH  + Q +R  AL +FK  
Sbjct: 238  LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297

Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
               IL+ATDVA+RGLDI  V+ VIN   P   K Y+H             +++LV + + 
Sbjct: 298  IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
             ++  I +  K  ++   + +  +L+   ++  + ++    ++LEA   + +K   +IN 
Sbjct: 358  HLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRE--CEIKLEAANFDEKK---EINK 412

Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
             ++++ +GK+ P+ E +R     K ++K  +F
Sbjct: 413  RKQMILEGKD-PDLEAKRKAELAKIKQKNRRF 443


>ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
            scrofa].
          Length = 483

 Score =  194 bits (494), Expect = 1e-49
 Identities = 132/452 (29%), Positives = 227/452 (50%), Gaps = 7/452 (1%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            F ++ LS  L++    +G KQPTP+Q  CIP  L G+D                LP+L++
Sbjct: 4    FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L   P        LVL PTREL  Q+    + L +   +  C+ VGG+D+ +Q   L   
Sbjct: 64   LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
            P ++IATPGRL DHL +  +F +  I  L++DEADR+L++    F   ++ I+      R
Sbjct: 121  PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+LFSAT+TD +++L S++   P      +       L Q ++ +    E  ++A +  
Sbjct: 181  QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLV---PEKVKDAYLVH 237

Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
            L+     +H    +++FT T K    + ++L         LH  + Q +R  AL +FK  
Sbjct: 238  LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297

Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
               IL+ATDVA+RGLDI  V+ VIN   P   K Y+H             +++LV + + 
Sbjct: 298  IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
             ++  I +  K  ++   + +  +L+   ++  + ++    ++LEA   + +K   +IN 
Sbjct: 358  HLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRE--CEIKLEAANFDEKK---EINK 412

Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
             ++++ +GK+ P+ E +R     K ++K  +F
Sbjct: 413  RKQMILEGKD-PDLEAKRKAELAKIKQKNRRF 443


>ref|XP_001927639.2| PREDICTED: ATP-dependent RNA helicase DDX18 [Sus scrofa].
          Length = 672

 Score =  178 bits (451), Expect = 1e-44
 Identities = 131/412 (31%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
 Frame = +2

Query: 587  GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
            G FED S      S  D+ ++   L+AI  MGF   T IQ   I   L G+D+       
Sbjct: 174  GAFEDTSF----ASLTDL-VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 228

Query: 767  XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
                    +P +E ++   + PR    T VL+L PTREL +Q   V K+L      T  L
Sbjct: 229  SGKTLAFLIPAVELIVKLRFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 286

Query: 938  AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
             +GG +  ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FE
Sbjct: 287  IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 346

Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
            E++K+II++    RQTMLFSAT T +V+DLA +SL K P+ + V+ +   A    L Q +
Sbjct: 347  EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 406

Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
            + + P+ +  R  ++   L +     +M+F  + K     + LL  + L V  +HG   Q
Sbjct: 407  V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 463

Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
             +R     +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H          
Sbjct: 464  NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 523

Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
                  L+   E       +K +K P+         I   + ++EK+ +  Y
Sbjct: 524  GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 575


>ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Sus scrofa].
          Length = 646

 Score =  169 bits (428), Expect = 5e-42
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 165  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 225  QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 283  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 341

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 342  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 401

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+
Sbjct: 402  KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 458

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 459  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 518

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 519  VGNLGLATSFFNERNANITKDLL 541


>ref|XP_003360320.1| PREDICTED: ATP-dependent RNA helicase DDX3X [Sus scrofa].
          Length = 662

 Score =  169 bits (428), Expect = 5e-42
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 181  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 241  QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 299  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 357

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 358  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+
Sbjct: 418  KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 475  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 535  VGNLGLATSFFNERNANITKDLL 557


>ref|XP_003360577.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
            scrofa].
          Length = 644

 Score =  168 bits (426), Expect = 9e-42
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 165  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 225  QIYTDGPGEALKAVKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 283  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 341

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 342  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 401

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+
Sbjct: 402  KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 458

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 459  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 518

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 519  VGNLGLATSFFNERNINITKDLL 541


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,464,045
Number of extensions: 1348396
Number of successful extensions: 5744
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5554
Number of HSP's successfully gapped: 57
Length of query: 662
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 557
Effective length of database: 8,729,747
Effective search space: 4862469079
Effective search space used: 4862469079
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008343
         (1988 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus ...   972   0.0  
Alignment   gi|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus ...   222   7e-58
Alignment   gi|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [M...   199   9e-51
Alignment   gi|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus].     197   3e-50
Alignment   gi|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus].     186   8e-47
Alignment   gi|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus ...   170   3e-42
Alignment   gi|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus m...   169   7e-42
Alignment   gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu...   168   2e-41
Alignment   gi|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [M...   167   4e-41
Alignment   gi|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [M...   166   8e-41

>ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus].
          Length = 760

 Score =  972 bits (2513), Expect = 0.0
 Identities = 516/633 (81%), Positives = 531/633 (83%)
 Frame = +2

Query: 71   MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
            MLAELG I TIG                   GPIVLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1    MLAELGFIRTIGENDEVPVEPESDSGDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEK 60

Query: 251  EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
            EGMYDGSWA+ADVMSQLKKKRAATTLDEKIEKVRK+RK EDKEAKSG  +          
Sbjct: 61   EGMYDGSWALADVMSQLKKKRAATTLDEKIEKVRKRRKAEDKEAKSGKVEEKEGQADSDL 120

Query: 431  XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
                                      DE ILTKADTL+VKE+     GQ AGGFFEDAS+
Sbjct: 121  KGQENPGEDEAGSKDEDSETDYSSE-DEEILTKADTLKVKEKKKKKKGQAAGGFFEDASE 179

Query: 611  YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
            YD++LSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI               
Sbjct: 180  YDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 239

Query: 791  LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
            LPVLERLIYKPRQA VTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE
Sbjct: 240  LPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 299

Query: 971  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
            AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS
Sbjct: 300  AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 359

Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
            HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI
Sbjct: 360  HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 419

Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
            VAALLMRTFTDHVMLFTQTKKQAHRMHILLGL+GLQVGELHGNLSQTQRLEALRRFKDEQ
Sbjct: 420  VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQ 479

Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
            IDILVATDVAARGLDIEGVKTVINFTMPNT+KHYVH             SVSLVGEEERK
Sbjct: 480  IDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERK 539

Query: 1691 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 1870
            MLKEIVKAAKAPVKARILPQDVILKFRDKIEK+EKDVYAVLQLEAEEKEMQ+SEAQI+TA
Sbjct: 540  MLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTA 599

Query: 1871 QRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            QRLL KGKE  + EPERSWFQTKEERKKEK A+
Sbjct: 600  QRLLAKGKETADQEPERSWFQTKEERKKEKIAK 632


>ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus].
          Length = 455

 Score =  222 bits (566), Expect = 7e-58
 Identities = 133/423 (31%), Positives = 226/423 (53%)
 Frame = +2

Query: 587  GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
            G  + A++ +E  +F+D+ ++  L +A   +G+ +PT IQ   IP+ L G+DI       
Sbjct: 12   GALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETG 71

Query: 767  XXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVG 946
                    LP+L  L+  P++      LVL PTREL  Q+    + L     +   + VG
Sbjct: 72   SGKTGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVG 128

Query: 947  GLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM 1126
            G+D  SQ  AL   P I+IATPGRLIDHL N   F+L +++ L++DEADR+L+  FE ++
Sbjct: 129  GIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV 188

Query: 1127 KEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPN 1306
             +I+++    R+T LFSATMT +V+ L   +LKNPV+  V+S       L+Q ++ I P+
Sbjct: 189  DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PS 247

Query: 1307 REGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 1486
            +   ++  +  +L     +  M+F  T     R  +LL  +G     LHG +SQ++RL +
Sbjct: 248  K--FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGS 305

Query: 1487 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVS 1666
            L +FK +   IL+ATDVA+RGLDI  V  V+NF +P   K Y+H             +++
Sbjct: 306  LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365

Query: 1667 LVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQK 1846
             V + + ++ + I       +       + ++   +++ + ++     L+   E+K+ ++
Sbjct: 366  FVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHGEKKKRKR 425

Query: 1847 SEA 1855
             +A
Sbjct: 426  EDA 428


>ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus].
          Length = 480

 Score =  199 bits (505), Expect = 9e-51
 Identities = 134/453 (29%), Positives = 229/453 (50%), Gaps = 8/453 (1%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            F ++ LS  L++    +G KQPTP+Q  CIP  L G+D                LP+L++
Sbjct: 4    FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L   P        LVL PTREL  Q+    + L +   +  C+ VGG+D+ +Q   L   
Sbjct: 64   LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
            P ++IATPGRL DHL +  +F++  I+ L++DEADR+L++    F   ++ I+      R
Sbjct: 121  PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+LFSAT+TD +K+L  ++   P      +       L Q ++ + P +  D   +   
Sbjct: 181  QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLV-PEKVKDAYLV--- 236

Query: 1340 LLMRTFTDH-----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD 1504
             L++TF D      +++FT T K    + ++L         LH  + Q +R  AL +FK 
Sbjct: 237  HLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKS 296

Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
                IL+ATDVA+RGLDI  V+ VIN   P   K Y+H             +++LV + +
Sbjct: 297  SIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356

Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 1864
              +L  I +  K  +   ++ +  +L+   ++  + ++    ++LEA   + +K   +IN
Sbjct: 357  IHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRE--CEIKLEASHFDEKK---EIN 411

Query: 1865 TAQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
              ++++ +GK+ P+ E +R     K +++  +F
Sbjct: 412  KRKQMILEGKD-PDLEAKRKAELAKIKQQNRRF 443


>ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus].
          Length = 874

 Score =  197 bits (501), Expect = 3e-50
 Identities = 143/441 (32%), Positives = 217/441 (49%), Gaps = 13/441 (2%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            FQ M LS P+ K I   G+K PTPIQ+  IPV L GKD+               LP+ ER
Sbjct: 97   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156

Query: 809  LIYKPRQAPV-TRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 985
            L  K R A    R L+L PTREL +Q    TK+L +F  + T L +GG  ++ Q AAL  
Sbjct: 157  L--KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 214

Query: 986  APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 1165
             PDI+IATPGRL+ H+    +  L S+E ++ DEADR+ +  F EQ++EII       QT
Sbjct: 215  NPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQT 273

Query: 1166 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 1345
            +LFSAT+   + + A   L  PV I ++ ++ +   L+  F+ +   RE  + A++  LL
Sbjct: 274  VLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLV---REDTKAAVLLYLL 330

Query: 1346 MRTF--TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 1519
                   D  ++F  TK  A  +  LL   G+    ++  L QT R   L +F   +   
Sbjct: 331  QNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCST 390

Query: 1520 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLK 1699
            L+ TD+AARGLDI  +  VIN++ P   K ++H             + SLV  +E   L 
Sbjct: 391  LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLL 450

Query: 1700 E----------IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKS 1849
            +          + +  + P  A  + +D +L  R     ++ +  ++        ++Q  
Sbjct: 451  DLHLFLGRSVTLARPCEEPSVADAVGRDGVLG-RVPQSVVDDEDSSLQTAMGASLDLQGL 509

Query: 1850 EAQINTAQRLLEKGKEAPNPE 1912
                N AQ+   + + AP+PE
Sbjct: 510  HRVANNAQQQYVRSRPAPSPE 530


>ref|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus].
          Length = 660

 Score =  186 bits (471), Expect = 8e-47
 Identities = 130/404 (32%), Positives = 206/404 (50%), Gaps = 8/404 (1%)
 Frame = +2

Query: 617  ENLSFQDMN--LSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
            E+ SF  ++  ++   LKAI  MGFK+ T IQ   I   L G+D+               
Sbjct: 165  EDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 224

Query: 791  LPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
            +PV+E ++   + PR    T VL+L PTREL +Q   V K+L      T  L +GG +  
Sbjct: 225  IPVIELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 282

Query: 962  SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 1141
            ++   L    +I++ATPGRL+DH+ N P F   +++ L++DEADR+LD  FEE++K+II+
Sbjct: 283  AEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 342

Query: 1142 MCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEFIRIRPNRE 1312
            +    RQTMLFSAT T +V+DLA +SL K P+ + V+ + +VA    L Q ++ + P+ +
Sbjct: 343  LLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYV-VCPSEK 401

Query: 1313 GDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 1492
              R  ++   L +     VM+F  +       + LL  + L V  +HG   Q +R     
Sbjct: 402  --RFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFF 459

Query: 1493 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLV 1672
            +F +    IL+ TDVAARGLDI  V  ++ +  P+  K Y+H                L+
Sbjct: 460  QFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLI 519

Query: 1673 GEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
               E       +K +K P+         +   + ++EK+ +  Y
Sbjct: 520  LRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNY 563


>ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus].
          Length = 875

 Score =  170 bits (431), Expect = 3e-42
 Identities = 119/396 (30%), Positives = 196/396 (49%), Gaps = 6/396 (1%)
 Frame = +2

Query: 614  DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
            +E   F D  LS+  LK +    ++  T IQK  I + L GKD+               +
Sbjct: 66   NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125

Query: 794  PVLERLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ 967
            PVLE L Y+ +        VL++ PTREL  Q   V +++ +    +  L +GG D+K +
Sbjct: 126  PVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query: 968  EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 1147
               +    +IL+ TPGRL+ H+     FH +++++L+LDEADR+LD  F + M  II   
Sbjct: 185  AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243

Query: 1148 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNT--DVAPFLRQEFIRIRPNREGDR 1321
               RQT+LFSAT T  VKDLA +SLK+P  ++V+          L Q +I    +++   
Sbjct: 244  PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQK--I 301

Query: 1322 EAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRF 1498
              + + L        ++ F+  K+  +   +   L  G+ +  LHG   Q +R+E    F
Sbjct: 302  SVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEF 361

Query: 1499 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXS-VSLVG 1675
              ++  +L ATD+AARGLD   V  V+ F  P     Y+H             + + L+ 
Sbjct: 362  VRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLP 421

Query: 1676 EEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIE 1783
             EE+ M++++++  K PVK   +  + ++  + K+E
Sbjct: 422  SEEQGMVQQLLQ-KKVPVKEIKINPEKLIDVQKKLE 456


>ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus].
          Length = 660

 Score =  169 bits (428), Expect = 7e-42
 Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 180  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 240  QIYTDGPGEALRAMKENGKYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 298  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 356

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 357  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 416

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D ++L F +TKK A  +   L   G     +HG+
Sbjct: 417  KVVWVE---EADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGD 473

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 474  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 534  VGNLGLATSFFNERNINITKDLL 556


>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
          Length = 406

 Score =  168 bits (425), Expect = 2e-41
 Identities = 108/391 (27%), Positives = 195/391 (49%), Gaps = 5/391 (1%)
 Frame = +2

Query: 548  KERXXXXXGQEAGGFFEDASQYDENL-SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPV 724
            + R     G E  G  E  S ++E + SF DMNLS  LL+ I   GF++P+ IQ+  I  
Sbjct: 8    RSRDNGPDGMEPEGVIE--SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP 65

Query: 725  GLLGKDIXXXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQ 904
             + G D+               + +L+++         T+ LVL PTREL  Q+  V   
Sbjct: 66   CIKGYDVIAQAQSGTGKTATFAISILQQI---ELDLKATQALVLAPTRELAQQIQKVVMA 122

Query: 905  LAQFCSITTCLAVGGLDVKSQEAALRA-APDILIATPGRLIDHLHN---CPSFHLSSIEV 1072
            L  +   +    +GG +V+++   L+  AP I++ TPGR+ D L+     P +    I++
Sbjct: 123  LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY----IKM 178

Query: 1073 LILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNS 1252
             +LDEAD ML   F++Q+ +I +  + + Q +L SATM  +V ++    +++P+RI V  
Sbjct: 179  FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 238

Query: 1253 NTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMG 1432
                   +RQ +I +   RE  +   +  L         ++F  T+++   +   +    
Sbjct: 239  EELTLEGIRQFYINVE--REEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296

Query: 1433 LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHY 1612
              V  +HG++ Q +R   +R F+     +L+ TD+ ARG+D++ V  VIN+ +P   ++Y
Sbjct: 297  FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356

Query: 1613 VHXXXXXXXXXXXXXSVSLVGEEERKMLKEI 1705
            +H             ++++V EE+++ L++I
Sbjct: 357  IHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387


>ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus].
          Length = 819

 Score =  167 bits (422), Expect = 4e-41
 Identities = 122/405 (30%), Positives = 195/405 (48%), Gaps = 35/405 (8%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            S++D +L   +L+ I   G+K+PTPIQ+  IP+GL  +DI               +P+L 
Sbjct: 391  SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450

Query: 806  RLIYKPR--------QAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
             +   P+        Q P    ++L PTREL  Q+   T +  +   I T   +GG+  +
Sbjct: 451  WITTLPKIDRIEESDQGPYA--IILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISRE 508

Query: 962  SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII- 1138
             Q   LR   +I+IATPGRLID L N     LS    ++LDEADRM+D  FE  +++I+ 
Sbjct: 509  DQGFRLRMGCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 567

Query: 1139 ------------------RMCSH-------HRQTMLFSATMTDEVKDLASVSLKNPVRIF 1243
                              +M ++       +RQT++F+ATM   V+ LA   L+ P  ++
Sbjct: 568  HMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVY 627

Query: 1244 VNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLG 1423
            + S       + Q+   +    E ++   + A+L + F   +++F   KK    +   L 
Sbjct: 628  IGSAGKPHERVEQKVFLM---SESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLE 684

Query: 1424 LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTI 1603
             MG     LHG   Q QR  AL   K    DILVATDVA RG+DI+ V  V+N+ M   I
Sbjct: 685  KMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNI 744

Query: 1604 KHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKEIVKA-AKAPVKA 1735
            + Y+H             +++ + +E+  +  E+ +A  ++PV +
Sbjct: 745  EDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSS 789


>ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus].
          Length = 407

 Score =  166 bits (419), Expect = 8e-41
 Identities = 109/382 (28%), Positives = 196/382 (51%), Gaps = 4/382 (1%)
 Frame = +2

Query: 572  GQEAGGFFEDASQYDENL-SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIX 748
            G +  G  E  S ++E + +F DMNL   LL+ I   GF++P+ IQ+  I   + G D+ 
Sbjct: 17   GMDPDGVIE--SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVI 74

Query: 749  XXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSIT 928
                          + +L++L  + ++   T+ LVL PTREL  Q+  V   L  +   T
Sbjct: 75   AQAQSGTGKTATFAISILQQLEIEFKE---TQALVLAPTRELAQQIQKVILALGDYMGAT 131

Query: 929  TCLAVGGLDVKSQEAALRA-APDILIATPGRLIDHLHNCPSFHLSS--IEVLILDEADRM 1099
                +GG +V+++   L+A AP I++ TPGR+ D L+     +LS   I++ +LDEAD M
Sbjct: 132  CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YLSPKWIKMFVLDEADEM 188

Query: 1100 LDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLR 1279
            L   F++Q+ EI +  +   Q +L SATM  +V ++    +++P+RI V         ++
Sbjct: 189  LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248

Query: 1280 QEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            Q +I +   RE  +   +  L         ++F  T+++   +   +      V  LHG+
Sbjct: 249  QFYINVE--REEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
            + Q +R   +R F+     +L+ TD+ ARG+D++ V  VIN+ +P   ++Y+H       
Sbjct: 307  MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366

Query: 1640 XXXXXXSVSLVGEEERKMLKEI 1705
                  +++ V EE++++L++I
Sbjct: 367  FGRKGVAINFVTEEDKRILRDI 388


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,556,320
Number of extensions: 1754190
Number of successful extensions: 7249
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 7005
Number of HSP's successfully gapped: 65
Length of query: 662
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 554
Effective length of database: 12,373,671
Effective search space: 6855013734
Effective search space used: 6855013734
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008343
         (1988 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo...   994   0.0  
Alignment   gi|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isofo...   221   1e-57
Alignment   gi|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo...   196   5e-50
Alignment   gi|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Hom...   188   2e-47
Alignment   gi|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [...   188   2e-47
Alignment   gi|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo...   175   1e-43
Alignment   gi|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens].     173   5e-43
Alignment   gi|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Hom...   168   1e-41
Alignment   gi|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [...   168   1e-41
Alignment   gi|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [...   168   1e-41

>ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens].
          Length = 796

 Score =  994 bits (2571), Expect = 0.0
 Identities = 535/658 (81%), Positives = 548/658 (83%), Gaps = 2/658 (0%)
 Frame = +2

Query: 2    GSRGNLRARQRAGPASGSGCFGNMLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLG 181
            G    LRA  +A  ASGSG   NMLA+LGLIGTIG                   GPIVLG
Sbjct: 9    GGCEKLRAGPQAVLASGSGFCDNMLADLGLIGTIGEDDEVPVEPESDSGDEEEEGPIVLG 68

Query: 182  RKQKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKR 361
            R+QKAL KNRSADFNPDFVFTEKEG YDGSWA+ADVMSQLKKKRAATTLDEKIEKVRKKR
Sbjct: 69   RRQKALGKNRSADFNPDFVFTEKEGTYDGSWALADVMSQLKKKRAATTLDEKIEKVRKKR 128

Query: 362  KTEDKEAKSGNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ADENILTKADT 538
            KTEDKEAKSG  +                                    ADENILTKADT
Sbjct: 129  KTEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILTKADT 188

Query: 539  LRVKERXXXXX-GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKAC 715
            L+VK+R      GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKAC
Sbjct: 189  LKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKAC 248

Query: 716  IPVGLLGKDIXXXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSV 895
            IPVGLLGKDI               LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSV
Sbjct: 249  IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSV 308

Query: 896  TKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVL 1075
            T+QLAQFC+ITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVL
Sbjct: 309  TRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVL 368

Query: 1076 ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSN 1255
            ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSN
Sbjct: 369  ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSN 428

Query: 1256 TDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGL 1435
            TDVAPFLRQEFIRIRPNREGDREAIVAALL RTFTDHVMLFTQTKKQAHRMHILLGLMGL
Sbjct: 429  TDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGL 488

Query: 1436 QVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYV 1615
            QVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYV
Sbjct: 489  QVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYV 548

Query: 1616 HXXXXXXXXXXXXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK 1795
            H             SVSLVGE+ERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK
Sbjct: 549  HRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK 608

Query: 1796 DVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
            DVYAVLQLEAEEKEMQ+SEAQINTA+RLLEKGKEA   EPERSWFQTKEERKKEK A+
Sbjct: 609  DVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAK 666


>ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens].
          Length = 455

 Score =  221 bits (564), Expect = 1e-57
 Identities = 134/417 (32%), Positives = 222/417 (53%)
 Frame = +2

Query: 614  DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
            +E  +F+D+ ++  L +A   +G+ +PT IQ   IP+ L G+DI               L
Sbjct: 21   EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80

Query: 794  PVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEA 973
            P+L  L+  P++      LVL PTREL  Q+    + L     + + + VGG+D  SQ  
Sbjct: 81   PILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 974  ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH 1153
            AL   P I+IATPGRLIDHL N   F+L +++ L++DEADR+L+  FE ++ +I+++   
Sbjct: 138  ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 1154 HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 1333
             R+T LFSATMT +V+ L   +LKNPV+  V+S       L+Q +I I P++   ++  +
Sbjct: 198  DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFI-PSK--FKDTYL 254

Query: 1334 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 1513
              +L     +  M+F  T     R  +LL  +G     LHG +SQ++RL +L +FK +  
Sbjct: 255  VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314

Query: 1514 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKM 1693
             IL+ATDVA+RGLDI  V  V+NF +P   K Y+H             +++ V + + ++
Sbjct: 315  SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374

Query: 1694 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 1864
             + I       +       D ++   +++ + ++     L+   E+K+  + +A  N
Sbjct: 375  FQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDN 431


>ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens].
          Length = 483

 Score =  196 bits (499), Expect = 5e-50
 Identities = 133/452 (29%), Positives = 227/452 (50%), Gaps = 7/452 (1%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            F ++ LS  L++    +G KQPTP+Q  CIP  L G+D                LP+L++
Sbjct: 4    FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L   P        LVL PTREL  Q+    + L +   +  C+ VGG+D+ +Q   L   
Sbjct: 64   LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
            P ++IATPGRL DHL +  +F +  I  L++DEADR+L++    F   ++ I+      R
Sbjct: 121  PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180

Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
            QT+LFSAT+TD +++L  ++   P      +       L Q ++ +    E  ++A +  
Sbjct: 181  QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLV---PEKVKDAYLVH 237

Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
            L+ R   +H    +++FT T K    + ++L         LH  + Q +R  AL +FK  
Sbjct: 238  LIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSS 297

Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
               IL+ATDVA+RGLDI  V+ VIN   P   K Y+H             +++LV + + 
Sbjct: 298  IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357

Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
             ++  I +  K  ++   + +  +L+   ++  + ++    ++LEA   + +K   +IN 
Sbjct: 358  HLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRE--CEIKLEAAHFDEKK---EINK 412

Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
             ++L+ +GK+ P+ E +R     K ++K  +F
Sbjct: 413  RKQLILEGKD-PDLEAKRKAELAKIKQKNRRF 443


>ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens].
          Length = 881

 Score =  188 bits (477), Expect = 2e-47
 Identities = 128/361 (35%), Positives = 183/361 (50%), Gaps = 2/361 (0%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            FQ M LS P+ K I   G+K PTPIQ+  IPV L GKD+               LP+ ER
Sbjct: 98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L     Q    R L+L PTREL +Q    TK+L +F  + T L +GG  ++ Q AAL   
Sbjct: 158  LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 1168
            PDI+IATPGRL+ H+    S  L S+E ++ DEADR+ +  F EQ++EII       QT+
Sbjct: 217  PDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTV 275

Query: 1169 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 1348
            LFSAT+   + + A   L  PV I ++ +T +   L+  F  +   RE  + A++  LL 
Sbjct: 276  LFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLV---REDTKAAVLLHLLH 332

Query: 1349 RTF--TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 1522
                  D  ++F  TK  A  +  LL    +    ++  L  T R   L +F   +   L
Sbjct: 333  NVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTL 392

Query: 1523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKE 1702
            + TD+AARGLDI  +  VIN++ P   K ++H             + SLV  +E   L +
Sbjct: 393  IVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLD 452

Query: 1703 I 1705
            +
Sbjct: 453  L 453


>ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens].
          Length = 882

 Score =  188 bits (477), Expect = 2e-47
 Identities = 128/361 (35%), Positives = 183/361 (50%), Gaps = 2/361 (0%)
 Frame = +2

Query: 629  FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
            FQ M LS P+ K I   G+K PTPIQ+  IPV L GKD+               LP+ ER
Sbjct: 98   FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157

Query: 809  LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
            L     Q    R L+L PTREL +Q    TK+L +F  + T L +GG  ++ Q AAL   
Sbjct: 158  LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216

Query: 989  PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 1168
            PDI+IATPGRL+ H+    S  L S+E ++ DEADR+ +  F EQ++EII       QT+
Sbjct: 217  PDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTV 275

Query: 1169 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 1348
            LFSAT+   + + A   L  PV I ++ +T +   L+  F  +   RE  + A++  LL 
Sbjct: 276  LFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLV---REDTKAAVLLHLLH 332

Query: 1349 RTF--TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 1522
                  D  ++F  TK  A  +  LL    +    ++  L  T R   L +F   +   L
Sbjct: 333  NVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTL 392

Query: 1523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKE 1702
            + TD+AARGLDI  +  VIN++ P   K ++H             + SLV  +E   L +
Sbjct: 393  IVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLD 452

Query: 1703 I 1705
            +
Sbjct: 453  L 453


>ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens].
          Length = 875

 Score =  175 bits (444), Expect = 1e-43
 Identities = 117/395 (29%), Positives = 193/395 (48%), Gaps = 3/395 (0%)
 Frame = +2

Query: 614  DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
            +E   F D  LS+  LK +    ++  T IQK  I + L GKD+               +
Sbjct: 66   NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125

Query: 794  PVLERLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ 967
            PVLE L Y+ +        VL++ PTREL  Q   V +++ +    +  L +GG D+K +
Sbjct: 126  PVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184

Query: 968  EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 1147
               +    +IL+ TPGRL+ H+    SFH + +++L+LDEADR+LD  F + M  +I   
Sbjct: 185  AERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 243

Query: 1148 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 1327
               RQT+LFSAT T  VKDLA +SLKNP  ++V+     +     E   I    +     
Sbjct: 244  PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303

Query: 1328 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRFKD 1504
            + + L        ++ F+  K+  +   +   L  G+ +  LHG   Q +R+E    F  
Sbjct: 304  LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363

Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
            ++  +L ATD+AARGLD   V  V+ F  P     Y+H             ++ ++   E
Sbjct: 364  KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423

Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKM 1789
            + M++++++  K PVK   +  + ++  + K+E +
Sbjct: 424  KAMVQQLLQ-KKVPVKEIKINPEKLIDVQKKLESI 457


>ref|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens].
          Length = 670

 Score =  173 bits (439), Expect = 5e-43
 Identities = 123/388 (31%), Positives = 192/388 (49%), Gaps = 6/388 (1%)
 Frame = +2

Query: 659  LKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLERLI---YKPRQ 829
            LKAI  MGF   T IQ   I   L G+D+               +P +E ++   + PR 
Sbjct: 191  LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRN 250

Query: 830  APVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIAT 1009
               T VL+L PTREL +Q   V K+L      T  L +GG +  ++   L    +I++AT
Sbjct: 251  G--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 308

Query: 1010 PGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMT 1189
            PGRL+DH+ N P F   +++ L++DEADR+LD  FEE++K+II++    RQTMLFSAT T
Sbjct: 309  PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 368

Query: 1190 DEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEFIRIRPNREGDREAIVAALLMRTFT 1360
             +V+DLA +SL K P+ + V+ +   A    L Q ++ + P+ +  R  ++   L +   
Sbjct: 369  RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV-VCPSEK--RFLLLFTFLKKNRK 425

Query: 1361 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 1540
              +M+F  +       + LL  + L V  +HG   Q +R     +F +     L+ TDVA
Sbjct: 426  KKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVA 485

Query: 1541 ARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKEIVKAAK 1720
            ARGLDI  V  ++ +  P+  K Y+H                L+   E       +K +K
Sbjct: 486  ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSK 545

Query: 1721 APVKARILPQDVILKFRDKIEKMEKDVY 1804
             P+         I   + ++EK+ +  Y
Sbjct: 546  VPLSEFDFSWSKISDIQSQLEKLIEKNY 573


>ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens].
          Length = 662

 Score =  168 bits (426), Expect = 1e-41
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 181  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 241  QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 299  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 357

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 358  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+
Sbjct: 418  KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 475  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 535  VGNLGLATSFFNERNINITKDLL 557


>ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens].
          Length = 646

 Score =  168 bits (426), Expect = 1e-41
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 165  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 225  QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 283  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 341

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 342  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 401

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+
Sbjct: 402  KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 458

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 459  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 518

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 519  VGNLGLATSFFNERNINITKDLL 541


>ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens].
          Length = 661

 Score =  168 bits (426), Expect = 1e-41
 Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
 Frame = +2

Query: 626  SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
            SF D+ +   ++  I +  + +PTP+QK  IP+    +D+               LP+L 
Sbjct: 181  SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240

Query: 806  RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
            ++                   + +Q P++  LVL PTREL +Q++   ++ +    +  C
Sbjct: 241  QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 935  LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
            +  GG D+  Q   L     +L+ATPGRL+D +       L   + L+LDEADRMLD  F
Sbjct: 299  VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 357

Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
            E Q++ I+   +      R TM+FSAT   E++ LA   L   + + V      +  + Q
Sbjct: 358  EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417

Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
            + + +    E D+ + +  LL  T  D + L F +TKK A  +   L   G     +HG+
Sbjct: 418  KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474

Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
             SQ  R EAL +F+  +  ILVAT VAARGLDI  VK VINF +P+ I+ YVH       
Sbjct: 475  RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534

Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
                  + S   E    + K+++
Sbjct: 535  VGNLGLATSFFNERNINITKDLL 557


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,250,855
Number of extensions: 2105721
Number of successful extensions: 8807
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 8592
Number of HSP's successfully gapped: 59
Length of query: 662
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,704,088
Effective search space: 8131360664
Effective search space used: 8131360664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008343
         (1988 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                         355   6e-95
gb|GL896282.2| Sus scrofa unplaced genomic scaffold ChrUScaf4166      327   1e-86

>Sscrofa_Chr17 
||          Length = 69701581

 Score =  355 bits (179), Expect = 6e-95
 Identities = 179/179 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1573     ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 1632
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230528 ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 57230469

                                                                            
Query: 1633     agctcgtgctggccgggctgggcgctcagtctctctggtgggagaagaggagcggaagat 1692
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230468 agctcgtgctggccgggctgggcgctcagtctctctggtgggagaagaggagcggaagat 57230409

                                                                           
Query: 1693     gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 1751
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230408 gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 57230350



 Score =  325 bits (164), Expect = 5e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117966 cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 57117907

                                                                            
Query: 61       tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117906 tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 57117847

                                                            
Query: 121      gccagtggagccagagacggactccgaagacgaggaggaggagg 164
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117846 gccagtggagccagagacggactccgaagacgaggaggaggagg 57117803



 Score =  319 bits (161), Expect = 3e-84
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1332     tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 1391
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57232462 tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 57232403

                                                                            
Query: 1392     agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 1451
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57232402 agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 57232343

                                                         
Query: 1452     atggcaacctgtcacagacacagcggttggaggccctccgg 1492
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 57232342 atggcaacctgtcacagacacagcggttggaggccctccgg 57232302



 Score =  313 bits (158), Expect = 2e-82
 Identities = 165/166 (99%), Gaps = 1/166 (0%)
 Strand = Plus / Minus

                                                                            
Query: 369      aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 428
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57114808 aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 57114749

                                                                            
Query: 429      cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 488
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57114748 cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 57114689

                                                              
Query: 489      agactgactactcatcagcagatgagaaca-tcctcaccaaagcag 533
                |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 57114688 agactgactactcatcagcagatgagaacattcctcaccaaagcag 57114643



 Score =  295 bits (149), Expect = 5e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 162      aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117289 aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 57117230

                                                                            
Query: 222      tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 281
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117229 tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 57117170

                                             
Query: 282      ctgatgtcatgagccagctcaagaagaag 310
                |||||||||||||||||||||||||||||
Sbjct: 57117169 ctgatgtcatgagccagctcaagaagaag 57117141



 Score =  285 bits (144), Expect = 5e-74
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1194     aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 1253
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57233791 aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 57233732

                                                                            
Query: 1254     acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 1313
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57233731 acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 57233672

                                        
Query: 1314     gggaccgggaagccattgtggcag 1337
                ||||||||||||||||||||||||
Sbjct: 57233671 gggaccgggaagccattgtggcag 57233648



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 663      aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 722
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57113105 aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 57113046

                                                                      
Query: 723      tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57113045 tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 57112992



 Score =  216 bits (109), Expect = 4e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1750     agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 1809
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57229070 agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 57229011

                                                                 
Query: 1810     tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 1858
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57229010 tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 57228962



 Score =  210 bits (106), Expect = 2e-51
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1093     caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccca 1152
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57234024 caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccca 57233965

                                                              
Query: 1153     ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 1198
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57233964 ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 57233919



 Score =  208 bits (105), Expect = 9e-51
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1856     cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 1915
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57228792 cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 57228733

                                                             
Query: 1916     gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 1960
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57228732 gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 57228688



 Score =  178 bits (90), Expect = 8e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                            
Query: 576      aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 635
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57113886 aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 57113827

                                              
Query: 636      acatgaacctttcccgccctcttctgaagg 665
                ||||||||||||||||||||||||||||||
Sbjct: 57113826 acatgaacctttcccgccctcttctgaagg 57113797



 Score =  168 bits (85), Expect = 7e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1491     ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 1550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230722 ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 57230663

                                         
Query: 1551     ttgacattgagggggtcaaaacggt 1575
                |||||||||||||||||||||||||
Sbjct: 57230662 ttgacattgagggggtcaaaacggt 57230638



 Score =  125 bits (63), Expect = 1e-25
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                            
Query: 309      agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 368
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57115133 agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 57115074

                   
Query: 369      agg 371
                |||
Sbjct: 57115073 agg 57115071



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                               
Query: 532      agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 578
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57114050 agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 57114004


>gb|GL896282.2| Sus scrofa unplaced genomic scaffold ChrUScaf4166
          Length = 53024

 Score =  327 bits (165), Expect = 1e-86
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                         
Query: 369   aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 428
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43295 aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 43236

                                                                         
Query: 429   cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 488
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43235 cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 43176

                                                          
Query: 489   agactgactactcatcagcagatgagaacatcctcaccaaagcag 533
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43175 agactgactactcatcagcagatgagaacatcctcaccaaagcag 43131



 Score =  325 bits (164), Expect = 5e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1     cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46347 cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 46288

                                                                         
Query: 61    tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46287 tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 46228

                                                         
Query: 121   gccagtggagccagagacggactccgaagacgaggaggaggagg 164
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46227 gccagtggagccagagacggactccgaagacgaggaggaggagg 46184



 Score =  295 bits (149), Expect = 5e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                         
Query: 768   caggtaaaactgcagcttttgccctgcccgtcttggagcgtctaatctacaaacctcggc 827
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40183 caggtaaaactgcagcttttgccctgcccgtcttggagcgtctaatctacaaacctcggc 40124

                                                                         
Query: 828   aggccccagtgacccgcgttctggtgctggttcccacccgagaactgggcatccaggtgc 887
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40123 aggccccagtgacccgcgttctggtgctggttcccacccgagaactgggcatccaggtgc 40064

                                          
Query: 888   attctgtcaccaagcagctggcacagttc 916
             |||||||||||||||||||||||||||||
Sbjct: 40063 attctgtcaccaagcagctggcacagttc 40035



 Score =  295 bits (149), Expect = 5e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                         
Query: 162   aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45670 aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 45611

                                                                         
Query: 222   tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 281
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45610 tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 45551

                                          
Query: 282   ctgatgtcatgagccagctcaagaagaag 310
             |||||||||||||||||||||||||||||
Sbjct: 45550 ctgatgtcatgagccagctcaagaagaag 45522



 Score =  289 bits (146), Expect = 3e-75
 Identities = 146/146 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1332  tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 1391
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34874 tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 34815

                                                                         
Query: 1392  agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 1451
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34814 agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 34755

                                       
Query: 1452  atggcaacctgtcacagacacagcgg 1477
             ||||||||||||||||||||||||||
Sbjct: 34754 atggcaacctgtcacagacacagcgg 34729



 Score =  285 bits (144), Expect = 5e-74
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1194  aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 1253
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36203 aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 36144

                                                                         
Query: 1254  acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 1313
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36143 acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 36084

                                     
Query: 1314  gggaccgggaagccattgtggcag 1337
             ||||||||||||||||||||||||
Sbjct: 36083 gggaccgggaagccattgtggcag 36060



 Score =  266 bits (134), Expect = 4e-68
 Identities = 153/160 (95%), Gaps = 7/160 (4%)
 Strand = Plus / Minus

                                                                         
Query: 944   ggcggcctggacgtgaagtctcaggaagcagcccttcgggcagcacctga-------cat 996
             ||||||||||||||||||||||||||||||||||||||||||||||||||       |||
Sbjct: 39172 ggcggcctggacgtgaagtctcaggaagcagcccttcgggcagcacctganacctgacat 39113

                                                                         
Query: 997   cctcatcgccaccccgggccggctcattgatcacctccacaactgcccttccttccacct 1056
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39112 cctcatcgccaccccgggccggctcattgatcacctccacaactgcccttccttccacct 39053

                                                     
Query: 1057  gagcagcatcgaggtgctcatcctggatgaggctgacagg 1096
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 39052 gagcagcatcgaggtgctcatcctggatgaggctgacagg 39013



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                         
Query: 663   aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 722
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41596 aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 41537

                                                                   
Query: 723   tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 776
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41536 tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 41483



 Score =  216 bits (109), Expect = 4e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1750  agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 1809
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31515 agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 31456

                                                              
Query: 1810  tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 1858
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31455 tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 31407



 Score =  208 bits (105), Expect = 9e-51
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1856  cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 1915
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31237 cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 31178

                                                          
Query: 1916  gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 1960
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31177 gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 31133



 Score =  202 bits (102), Expect = 5e-49
 Identities = 105/106 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1093  caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccca 1152
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 36436 caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccct 36377

                                                           
Query: 1153  ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 1198
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36376 ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 36331



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1573  ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 1632
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33051 ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 32992

                                                   
Query: 1633  agctcgtgctggccgggctgggcgctcagtctctctgg 1670
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 32991 agctcgtgctggccgggctgggcgctcagtctctctgg 32954



 Score =  178 bits (90), Expect = 8e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                         
Query: 576   aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 635
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42377 aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 42318

                                           
Query: 636   acatgaacctttcccgccctcttctgaagg 665
             ||||||||||||||||||||||||||||||
Sbjct: 42317 acatgaacctttcccgccctcttctgaagg 42288



 Score =  168 bits (85), Expect = 7e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1491  ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 1550
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33245 ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 33186

                                      
Query: 1551  ttgacattgagggggtcaaaacggt 1575
             |||||||||||||||||||||||||
Sbjct: 33185 ttgacattgagggggtcaaaacggt 33161



 Score =  125 bits (63), Expect = 1e-25
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                         
Query: 309   agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 368
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43620 agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 43561

                
Query: 369   agg 371
             |||
Sbjct: 43560 agg 43558



 Score =  117 bits (59), Expect = 2e-23
 Identities = 59/59 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1693  gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 1751
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32853 gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 32795



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                            
Query: 532   agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 578
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42541 agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 42495


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,402,527
Number of extensions: 797
Number of successful extensions: 797
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 32
Length of query: 1988
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1966
Effective length of database: 2,808,408,574
Effective search space: 5521331256484
Effective search space used: 5521331256484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)