Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008343
(1988 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [B... 1004 0.0
Alignment gi|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [B... 219 5e-57
Alignment gi|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [... 194 3e-49
Alignment gi|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype... 180 5e-45
Alignment gi|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype... 180 5e-45
Alignment gi|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype... 180 5e-45
Alignment gi|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypepti... 180 5e-45
Alignment gi|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [B... 172 8e-43
Alignment gi|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [B... 172 1e-42
Alignment gi|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype... 172 1e-42
>ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus].
Length = 765
Score = 1004 bits (2597), Expect = 0.0
Identities = 535/635 (84%), Positives = 541/635 (85%), Gaps = 2/635 (0%)
Frame = +2
Query: 71 MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
ML+ELG I TIG GPIVLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1 MLSELGFIRTIGEDEDVQVEPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEK 60
Query: 251 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
EGMYDGSWAMADV+SQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSG S+
Sbjct: 61 EGMYDGSWAMADVLSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEKEKEAKEGSE 120
Query: 431 XXXXXXXXXXXXXXXXXXXXXXXXX-ADENILTKADTLRVKERXXXXX-GQEAGGFFEDA 604
ADENILTKADTL++KER GQEAGGFFEDA
Sbjct: 121 PEEEEDLERKDVEASEDEESETDYSSADENILTKADTLKIKERKKKKKKGQEAGGFFEDA 180
Query: 605 SQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXX 784
SQYDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI
Sbjct: 181 SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAA 240
Query: 785 XXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS 964
LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS
Sbjct: 241 FALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS 300
Query: 965 QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 1144
QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM
Sbjct: 301 QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
Query: 1145 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1324
CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE
Sbjct: 361 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 420
Query: 1325 AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD 1504
AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD
Sbjct: 421 AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD 480
Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH SVSLVGEEE
Sbjct: 481 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 1864
RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN
Sbjct: 541 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 600
Query: 1865 TAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
TAQRLLEKGKEAPNPEPERSWFQTKEERKKEK A+
Sbjct: 601 TAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAK 635
>ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus].
Length = 457
Score = 219 bits (559), Expect = 5e-57
Identities = 133/423 (31%), Positives = 223/423 (52%)
Frame = +2
Query: 596 EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXX 775
+ A + +E +F+D+ ++ L +A +G+ +PT IQ IP+ L G+DI
Sbjct: 17 QTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGK 76
Query: 776 XXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 955
LP+L L+ P++ LVL PTREL Q+ + L + + VGG+D
Sbjct: 77 TGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 133
Query: 956 VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 1135
SQ AL P I+IATPGRLIDHL N F+L +++ L++DEADR+L+ FE ++ +I
Sbjct: 134 SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 193
Query: 1136 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 1315
+++ R+T LFSATMT +V+ L +LKNPV+ V+S L+Q ++ I P++
Sbjct: 194 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PSK-- 250
Query: 1316 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
++ + +L + M+F T R +LL +G LHG +SQ++RL +L +
Sbjct: 251 FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 310
Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
FK + IL+ATDVA+RGLDI V V+NF +P K Y+H +++ V
Sbjct: 311 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370
Query: 1676 EEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEA 1855
+ + ++ + I + D ++ +++ + ++ L+ E+K+ + +
Sbjct: 371 QYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRSREDV 430
Query: 1856 QIN 1864
N
Sbjct: 431 GDN 433
>ref|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus].
Length = 876
Score = 194 bits (492), Expect = 3e-49
Identities = 147/449 (32%), Positives = 216/449 (48%), Gaps = 21/449 (4%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
FQ M LS P+ K I G+K PTPIQ+ IP+ L GKD+ +P+ ER
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L Q R L+L PTREL +Q TK+L +F + T L +GG ++ Q AAL
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHEN 216
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 1168
PDI+IATPGRL+ H+ + L S+E ++ DEADR+ + F EQ++EII QT+
Sbjct: 217 PDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTV 275
Query: 1169 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 1348
LFSAT+ + + A L PV I ++ ++ + L+ F +R D +A V L+
Sbjct: 276 LFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVRE----DAKAAVLLHLL 331
Query: 1349 RTFT---DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 1519
R D ++F TK A + LL G+ ++ L QT R L RF +
Sbjct: 332 RNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSA 391
Query: 1520 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLK 1699
L+ TD+AARGLDI + VIN++ P K ++H + SLV +E L
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLL 451
Query: 1700 EI-------VKAAKAP-----------VKARILPQDVILKFRDKIEKMEKDVYAVLQLEA 1825
++ + A+ P V R+ PQ V+ ++D LEA
Sbjct: 452 DLHLFLGRALTLARPPEEPSGTEGGDGVLGRV-PQGVV---------DDEDCGLRTSLEA 501
Query: 1826 EEKEMQKSEAQINTAQRLLEKGKEAPNPE 1912
E++ N AQ+ + + AP+PE
Sbjct: 502 -SLELRGLSRVANNAQQQYVRSRPAPSPE 529
>ref|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
taurus].
Length = 671
Score = 180 bits (456), Expect = 5e-45
Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
Frame = +2
Query: 587 GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
G FED S +D + + N LKAI MGF T IQ I L G+D+
Sbjct: 173 GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227
Query: 767 XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
+P +E ++ + PR T VL+L PTREL +Q V K+L T L
Sbjct: 228 SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285
Query: 938 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
+GG + ++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FE
Sbjct: 286 IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345
Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
E++K+II++ RQTMLFSAT T +V+DLA +SL K P+ + V+ + A L Q +
Sbjct: 346 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405
Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
+ + P+ + R ++ L + +M+F + K + LL + L V +HG Q
Sbjct: 406 V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462
Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
+R +F + IL+ TDVAARGLDI V ++ + P+ K Y+H
Sbjct: 463 NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522
Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
L+ E +K +K P+ I + ++EK+ + Y
Sbjct: 523 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574
>ref|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus].
Length = 671
Score = 180 bits (456), Expect = 5e-45
Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
Frame = +2
Query: 587 GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
G FED S +D + + N LKAI MGF T IQ I L G+D+
Sbjct: 173 GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227
Query: 767 XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
+P +E ++ + PR T VL+L PTREL +Q V K+L T L
Sbjct: 228 SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285
Query: 938 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
+GG + ++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FE
Sbjct: 286 IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345
Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
E++K+II++ RQTMLFSAT T +V+DLA +SL K P+ + V+ + A L Q +
Sbjct: 346 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405
Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
+ + P+ + R ++ L + +M+F + K + LL + L V +HG Q
Sbjct: 406 V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462
Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
+R +F + IL+ TDVAARGLDI V ++ + P+ K Y+H
Sbjct: 463 NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522
Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
L+ E +K +K P+ I + ++EK+ + Y
Sbjct: 523 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574
>ref|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
taurus].
Length = 671
Score = 180 bits (456), Expect = 5e-45
Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
Frame = +2
Query: 587 GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
G FED S +D + + N LKAI MGF T IQ I L G+D+
Sbjct: 173 GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227
Query: 767 XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
+P +E ++ + PR T VL+L PTREL +Q V K+L T L
Sbjct: 228 SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285
Query: 938 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
+GG + ++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FE
Sbjct: 286 IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345
Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
E++K+II++ RQTMLFSAT T +V+DLA +SL K P+ + V+ + A L Q +
Sbjct: 346 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405
Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
+ + P+ + R ++ L + +M+F + K + LL + L V +HG Q
Sbjct: 406 V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462
Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
+R +F + IL+ TDVAARGLDI V ++ + P+ K Y+H
Sbjct: 463 NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522
Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
L+ E +K +K P+ I + ++EK+ + Y
Sbjct: 523 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574
>ref|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 1 [Bos
taurus].
Length = 671
Score = 180 bits (456), Expect = 5e-45
Identities = 132/412 (32%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
Frame = +2
Query: 587 GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
G FED S +D + + N LKAI MGF T IQ I L G+D+
Sbjct: 173 GAFEDTS-FDSLTNLVNENT----LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 227
Query: 767 XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
+P +E ++ + PR T VL+L PTREL +Q V K+L T L
Sbjct: 228 SGKTLAFLIPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 285
Query: 938 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
+GG + ++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FE
Sbjct: 286 IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 345
Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
E++K+II++ RQTMLFSAT T +V+DLA +SL K P+ + V+ + A L Q +
Sbjct: 346 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 405
Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
+ + P+ + R ++ L + +M+F + K + LL + L V +HG Q
Sbjct: 406 V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 462
Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
+R +F + IL+ TDVAARGLDI V ++ + P+ K Y+H
Sbjct: 463 NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 522
Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
L+ E +K +K P+ I + ++EK+ + Y
Sbjct: 523 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 574
>ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus].
Length = 876
Score = 172 bits (437), Expect = 8e-43
Identities = 117/392 (29%), Positives = 187/392 (47%), Gaps = 2/392 (0%)
Frame = +2
Query: 614 DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
+E F D LS+ LK + ++ T IQK I + L GKD+ +
Sbjct: 66 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125
Query: 794 PVLERLI-YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
PVLE L + A VL++ PTREL Q V +++ + + L +GG D+K +
Sbjct: 126 PVLEALYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185
Query: 971 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
+ +IL+ TPGRL+ H+ FH +++++L+LDEADR+LD F + M II
Sbjct: 186 ERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLP 244
Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
RQT+LFSAT T VKDLA +SLKNP ++V+ + E I + +
Sbjct: 245 KKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVL 304
Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRFKDE 1507
+ L ++ F+ K+ + + L G+ + LHG Q +R+E F +
Sbjct: 305 YSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRK 364
Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
+ +L ATD+AARGLD V V+ F P Y+H ++ ++ E
Sbjct: 365 RAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE 424
Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIE 1783
K + + + K PVK + + ++ + K+E
Sbjct: 425 KGMVQQLLQKKVPVKEIKINPEKLIDVQKKLE 456
>ref|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Bos taurus].
Length = 620
Score = 172 bits (436), Expect = 1e-42
Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 4/380 (1%)
Frame = +2
Query: 623 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVL 802
+ F+ L + + G++ PTPIQ IPVGLLG+D+ LPV+
Sbjct: 204 VDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263
Query: 803 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQ-FCSITTCLAVGGLDVKSQEAAL 979
R + Q+ LVL PTREL IQ+ K+L + T L VGGL Q L
Sbjct: 264 LRAL---SQSKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRL 320
Query: 980 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 1159
R ++IATPGRL+D + S L SI+++++DEAD ML F++Q+ +++ H
Sbjct: 321 RQRIQVIIATPGRLLDIIKQ-RSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDC 379
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+L SAT+ V+ LA L++PV I P +RQ + + E ++ +
Sbjct: 380 QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVE---EPAKKKKLFE 436
Query: 1340 LL--MRTFTDHVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
+L + F V++F K A + + + GL+ +H + +Q +R L+ +
Sbjct: 437 ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGD 496
Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
D++V+T V RGLD+ GVK V+NF MP+++ YVH +++ + ++
Sbjct: 497 YDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKR 556
Query: 1691 MLKEIVKAAKAPVKARILPQ 1750
+ +I K K P + + PQ
Sbjct: 557 LFWDIAKRVK-PTGSLLPPQ 575
>ref|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos
taurus].
Length = 620
Score = 172 bits (436), Expect = 1e-42
Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 4/380 (1%)
Frame = +2
Query: 623 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVL 802
+ F+ L + + G++ PTPIQ IPVGLLG+D+ LPV+
Sbjct: 204 VDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263
Query: 803 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQ-FCSITTCLAVGGLDVKSQEAAL 979
R + Q+ LVL PTREL IQ+ K+L + T L VGGL Q L
Sbjct: 264 LRAL---SQSKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRL 320
Query: 980 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 1159
R ++IATPGRL+D + S L SI+++++DEAD ML F++Q+ +++ H
Sbjct: 321 RQRIQVIIATPGRLLDIIKQ-RSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDC 379
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+L SAT+ V+ LA L++PV I P +RQ + + E ++ +
Sbjct: 380 QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVE---EPAKKKKLFE 436
Query: 1340 LL--MRTFTDHVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
+L + F V++F K A + + + GL+ +H + +Q +R L+ +
Sbjct: 437 ILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGD 496
Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
D++V+T V RGLD+ GVK V+NF MP+++ YVH +++ + ++
Sbjct: 497 YDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKR 556
Query: 1691 MLKEIVKAAKAPVKARILPQ 1750
+ +I K K P + + PQ
Sbjct: 557 LFWDIAKRVK-PTGSLLPPQ 575
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,560,291
Number of extensions: 2087576
Number of successful extensions: 8645
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 8466
Number of HSP's successfully gapped: 56
Length of query: 662
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,074,782
Effective search space: 7783354446
Effective search space used: 7783354446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008343
(1988 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RN... 994 0.0
Alignment gi|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RN... 967 0.0
Alignment gi|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 222 9e-58
Alignment gi|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 195 1e-49
Alignment gi|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicas... 181 3e-45
Alignment gi|XP_850776.1| PREDICTED: similar to DEAD-box protein 54 (ATP-... 176 6e-44
Alignment gi|XP_543405.2| PREDICTED: similar to DEAD-box protein 54 (ATP-... 175 1e-43
Alignment gi|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 174 4e-43
Alignment gi|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 172 8e-43
Alignment gi|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chr... 172 1e-42
>ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
(DEAD-box protein 27) isoform 1 [Canis familiaris].
Length = 765
Score = 994 bits (2570), Expect = 0.0
Identities = 527/635 (82%), Positives = 537/635 (84%), Gaps = 2/635 (0%)
Frame = +2
Query: 71 MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
ML ELGLIGTIG GP+VLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1 MLEELGLIGTIGEDDDVPGHPESDSGDEEEEGPVVLGRKQKALQKNRSADFNPDFVFTEK 60
Query: 251 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
EG YDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSG S+
Sbjct: 61 EGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSEL 120
Query: 431 XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
ADENILTKADTL+VKER GQE GGFFEDASQ
Sbjct: 121 EEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKGQETGGFFEDASQ 180
Query: 611 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
YDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI
Sbjct: 181 YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 240
Query: 791 LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
LPVLERLIYKPRQ+PVTRVLVLVPTRELGIQVHSVTKQLAQFC+ITTCLAVGGLDVKSQE
Sbjct: 241 LPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQE 300
Query: 971 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS
Sbjct: 301 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 360
Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEF+RIRPNREGDREAI
Sbjct: 361 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAI 420
Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
VAALL RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ
Sbjct: 421 VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 480
Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH SVSLVGEEERK
Sbjct: 481 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERK 540
Query: 1691 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 1870
MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKE+Q+SEAQINTA
Sbjct: 541 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTA 600
Query: 1871 QRLL--EKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
+RLL EKGKEA N EPERSWFQTKEERKKEK A+
Sbjct: 601 KRLLEREKGKEASNHEPERSWFQTKEERKKEKIAK 635
>ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
(DEAD-box protein 27) isoform 2 [Canis familiaris].
Length = 763
Score = 967 bits (2500), Expect = 0.0
Identities = 517/635 (81%), Positives = 528/635 (83%), Gaps = 2/635 (0%)
Frame = +2
Query: 71 MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
ML ELGLIGTIG GP+VLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1 MLEELGLIGTIGEDDDVPGHPESDSGDEEEEGPVVLGRKQKALQKNRSADFNPDFVFTEK 60
Query: 251 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
EG YDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSG S+
Sbjct: 61 EGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSEL 120
Query: 431 XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
ADENILTKADTL+VKER GQE GGFFEDASQ
Sbjct: 121 EEQEDHEGKDEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKGQETGGFFEDASQ 180
Query: 611 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
YDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI
Sbjct: 181 YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 240
Query: 791 LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
LPVLERLIYKPRQ+PVTRVLVLVPTRELGIQVHSVTKQLA + + GGLDVKSQE
Sbjct: 241 LPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAHH--LAGLFSAGGLDVKSQE 298
Query: 971 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS
Sbjct: 299 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 358
Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEF+RIRPNREGDREAI
Sbjct: 359 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAI 418
Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
VAALL RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ
Sbjct: 419 VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 478
Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH SVSLVGEEERK
Sbjct: 479 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERK 538
Query: 1691 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 1870
MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKE+Q+SEAQINTA
Sbjct: 539 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTA 598
Query: 1871 QRLL--EKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
+RLL EKGKEA N EPERSWFQTKEERKKEK A+
Sbjct: 599 KRLLEREKGKEASNHEPERSWFQTKEERKKEKIAK 633
>ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 isoform 1 [Canis familiaris].
Length = 456
Score = 222 bits (566), Expect = 9e-58
Identities = 135/423 (31%), Positives = 225/423 (53%)
Frame = +2
Query: 596 EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXX 775
+ A Q +E +F+D+ ++ L +A +G+ +PT IQ IP+ L G+DI
Sbjct: 15 QPAVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGK 74
Query: 776 XXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 955
LP+L L+ P++ LVL PTREL Q+ + L + + + VGG+D
Sbjct: 75 TGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGID 131
Query: 956 VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 1135
SQ AL P I+IATPGRLIDHL N F+L +++ L++DEADR+L+ FE ++ +I
Sbjct: 132 SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 191
Query: 1136 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 1315
+++ R+T LFSATMT +V+ L +LKNPV+ V+S L+Q ++ I P++
Sbjct: 192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PSK-- 248
Query: 1316 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
++ + +L + M+F T R +LL +G LHG +SQ++RL +L +
Sbjct: 249 FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 308
Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
FK + IL+ATDVA+RGLDI V V+NF +P K Y+H +++ V
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 1676 EEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEA 1855
+ + ++ + I + D ++ +++ + ++ L+ E+K+ + +A
Sbjct: 369 QYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHGEKKKRTREDA 428
Query: 1856 QIN 1864
N
Sbjct: 429 GDN 431
>ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
isoform 1 [Canis familiaris].
Length = 488
Score = 195 bits (496), Expect = 1e-49
Identities = 133/452 (29%), Positives = 226/452 (50%), Gaps = 7/452 (1%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
F ++ LS L++ +G KQPTP+Q CIP L G+D LP+L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L P LVL PTREL Q+ + L + + C+ VGG+D+ +Q L
Sbjct: 64 LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
P ++IATPGRL DHL + +F + I L++DEADR+L++ F ++ I+ R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+LFSAT+TD +K+L ++ P + L Q ++ + E ++A +
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLV---PEKVKDAYLVH 237
Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
L+ +H +++FT T K + ++L LH + Q +R AL +FK
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
IL+ATDVA+RGLDI V+ VIN P K Y+H +++LV + +
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
++ I + K ++ + + +L+ ++ + ++ ++LEA + +K +IN
Sbjct: 358 HLVHAIEEQIKKQLEELSVEEAKVLQILTQVNVVRRE--CEIKLEAANFDEKK---EINK 412
Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
++L+ +GK+ P+ E +R K ++K +F
Sbjct: 413 RKQLILEGKD-PDLEAKRKAELAKIKQKNRRF 443
>ref|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicase DDX18 (DEAD-box
protein 18) (Myc-regulated DEAD-box protein) (MrDb)
[Canis familiaris].
Length = 669
Score = 181 bits (458), Expect = 3e-45
Identities = 128/404 (31%), Positives = 203/404 (50%), Gaps = 8/404 (1%)
Frame = +2
Query: 617 ENLSFQDMN--LSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
E+ SF ++ ++ LKAI MGF T IQ I L G+D+
Sbjct: 174 EDTSFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 233
Query: 791 LPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
+P +E ++ + PR T VL+L PTREL +Q V K+L + T L +GG +
Sbjct: 234 IPAVELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRS 291
Query: 962 SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 1141
++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FEE++K+II+
Sbjct: 292 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 351
Query: 1142 MCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEFIRIRPNRE 1312
+ RQTMLFSAT T +V+DLA +SL K P+ + V+ + A L Q ++ + P+ +
Sbjct: 352 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV-VCPSEK 410
Query: 1313 GDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 1492
R ++ L + +M+F + K + LL + L V +HG Q +R
Sbjct: 411 --RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFF 468
Query: 1493 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLV 1672
+F + IL+ TDVAARGLDI V ++ + P+ K Y+H L+
Sbjct: 469 QFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLI 528
Query: 1673 GEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
E +K +K P+ I + ++EK+ + Y
Sbjct: 529 LRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 572
>ref|XP_850776.1| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA helicase
DP97) isoform 3 [Canis familiaris].
Length = 889
Score = 176 bits (447), Expect = 6e-44
Identities = 139/451 (30%), Positives = 211/451 (46%), Gaps = 23/451 (5%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
FQ M LS P+ K I G+K PTPIQ+ IPV L GKD+ +P+ ER
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L Q R L+L PTREL +Q TK+L +F + T L +GG ++ Q AAL
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIE--------VLILDEADRMLDEYFEEQMKEIIRM 1144
PDI+IATPGRL+ H+ + L S+E +L R+ + F EQ++EII
Sbjct: 217 PDIIIATPGRLV-HVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGR 275
Query: 1145 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1324
QT+LFSAT+ + + A L PV I ++ + + L+ F +R D +
Sbjct: 276 LPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVRE----DTK 331
Query: 1325 AIVAALLMRTFT---DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
A V L+RT D ++F TK A + LL G+ ++ L QT R L +
Sbjct: 332 AAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAK 391
Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
F + L+ TD+AARGLDI + VIN++ P K ++H + SLV
Sbjct: 392 FTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 451
Query: 1676 EEERKMLKEI----------VKAAKAPVKARILPQDVILKF--RDKIEKMEKDVYAVLQL 1819
+E L ++ + + P ++L D +L + ++ E + ++L
Sbjct: 452 PDEVPYLLDLHLFLGRALTPARPHEEPSVRKLLGVDGVLGRVPQSVVDDEESGLQSIL-- 509
Query: 1820 EAEEKEMQKSEAQINTAQRLLEKGKEAPNPE 1912
E+ + AQ+ + + AP+PE
Sbjct: 510 -TSSLELGGLSRVADNAQQQYVRSRPAPSPE 539
>ref|XP_543405.2| PREDICTED: similar to DEAD-box protein 54 (ATP-dependent RNA helicase
DP97) isoform 1 [Canis familiaris].
Length = 884
Score = 175 bits (444), Expect = 1e-43
Identities = 126/370 (34%), Positives = 181/370 (48%), Gaps = 11/370 (2%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
FQ M LS P+ K I G+K PTPIQ+ IPV L GKD+ +P+ ER
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L Q R L+L PTREL +Q TK+L +F + T L +GG ++ Q AAL
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHEN 216
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIE--------VLILDEADRMLDEYFEEQMKEIIRM 1144
PDI+IATPGRL+ H+ + L S+E +L R+ + F EQ++EII
Sbjct: 217 PDIIIATPGRLV-HVAVEMNLKLQSVEYAAGMDGPLLTPPLFPRLFEMGFAEQLQEIIGR 275
Query: 1145 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1324
QT+LFSAT+ + + A L PV I ++ + + L+ F +R D +
Sbjct: 276 LPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVRE----DTK 331
Query: 1325 AIVAALLMRTFT---DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
A V L+RT D ++F TK A + LL G+ ++ L QT R L +
Sbjct: 332 AAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAK 391
Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVG 1675
F + L+ TD+AARGLDI + VIN++ P K ++H + SLV
Sbjct: 392 FTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 451
Query: 1676 EEERKMLKEI 1705
+E L ++
Sbjct: 452 PDEVPYLLDL 461
>ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 10 [Canis familiaris].
Length = 812
Score = 174 bits (440), Expect = 4e-43
Identities = 123/397 (30%), Positives = 195/397 (49%), Gaps = 27/397 (6%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
S++D +L +L+ I G+K+PTPIQ+ IP+GL +DI +P+L
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLL 451
Query: 806 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 985
LI + Q P ++L PTREL Q+ T + + I T +GG+ + Q LR
Sbjct: 452 TLIEESDQGPYA--IILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 509
Query: 986 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII--------- 1138
+I+IATPGRLID L N LS ++LDEADRM+D FE +++I+
Sbjct: 510 GCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 568
Query: 1139 ----------RMCSH-------HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVA 1267
+M ++ +RQT++F+ATM V+ LA L+ P +++ S
Sbjct: 569 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 628
Query: 1268 PFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGE 1447
+ Q+ + E ++ + A+L + F +++F KK + L MG
Sbjct: 629 ERVEQKVFLM---SESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACT 685
Query: 1448 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXX 1627
LHG Q QR AL K DILVATDVA RG+DI+ V V+N+ M I+ Y+H
Sbjct: 686 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 745
Query: 1628 XXXXXXXXXXSVSLVGEEERKMLKEIVKA-AKAPVKA 1735
+++ + +E+ + E+ +A ++PV +
Sbjct: 746 RTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSS 782
>ref|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
[Canis familiaris].
Length = 871
Score = 172 bits (437), Expect = 8e-43
Identities = 118/393 (30%), Positives = 188/393 (47%), Gaps = 3/393 (0%)
Frame = +2
Query: 614 DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
+E F D LS+ LK + ++ T IQK I + L GKD+ +
Sbjct: 66 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125
Query: 794 PVLERLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ 967
PVLE L Y+ + VL++ PTREL Q V +++ + + L +GG D+K +
Sbjct: 126 PVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184
Query: 968 EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 1147
+ +IL+ TPGRL+ H+ FH +++++L+LDEADR+LD F + M II
Sbjct: 185 AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 1148 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 1327
RQT+LFSAT T VKDLA +SLKNP I+V+ + E I +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISV 303
Query: 1328 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRFKD 1504
+ + L ++ F+ K+ + + L G+ + LHG Q +R+E F
Sbjct: 304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVR 363
Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
++ +L ATD+AARGLD V V+ F P Y+H ++ ++ E
Sbjct: 364 KRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423
Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIE 1783
K + + + K PVK + + ++ + K+E
Sbjct: 424 EKGMVQQLLQKKVPVKEIKINPEKLIDVQKKLE 456
>ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
(Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
isoform 12 [Canis familiaris].
Length = 653
Score = 172 bits (435), Expect = 1e-42
Identities = 118/374 (31%), Positives = 184/374 (49%), Gaps = 13/374 (3%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 806 RL--------IYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
++ + +Q P++ LVL PTREL +Q++ ++ + + C+ GG D+
Sbjct: 241 QIYSDGPGEALRAMKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 298
Query: 962 SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 1141
Q L +L+ATPGRL+D + L + L+LDEADRMLD FE Q++ I+
Sbjct: 299 QQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 357
Query: 1142 MCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNR 1309
+ R TM+FSAT E++ LA L + + V + + Q+ + +
Sbjct: 358 QDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVE--- 414
Query: 1310 EGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 1486
E D+ + + LL T D + L F +TKK A + L G +HG+ SQ R EA
Sbjct: 415 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 474
Query: 1487 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVS 1666
L +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH + S
Sbjct: 475 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 534
Query: 1667 LVGEEERKMLKEIV 1708
E + K+++
Sbjct: 535 FFNERNINITKDLL 548
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,853,482
Number of extensions: 2153641
Number of successful extensions: 9404
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 8954
Number of HSP's successfully gapped: 145
Length of query: 662
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 553
Effective length of database: 15,240,880
Effective search space: 8428206640
Effective search space used: 8428206640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008343
(1988 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP... 1016 0.0
Alignment gi|XP_003360085.1| PREDICTED: probable ATP-dependent RNA helica... 534 e-152
Alignment gi|XP_003360087.1| PREDICTED: hypothetical protein LOC100626268... 272 6e-73
Alignment gi|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helica... 215 8e-56
Alignment gi|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helica... 194 1e-49
Alignment gi|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helica... 194 1e-49
Alignment gi|XP_001927639.2| PREDICTED: ATP-dependent RNA helicase DDX18 ... 178 1e-44
Alignment gi|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X ... 169 5e-42
Alignment gi|XP_003360320.1| PREDICTED: ATP-dependent RNA helicase DDX3X ... 169 5e-42
Alignment gi|XP_003360577.1| PREDICTED: ATP-dependent RNA helicase DDX3X-... 168 9e-42
>ref|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like, partial [Sus scrofa].
Length = 757
Score = 1016 bits (2626), Expect = 0.0
Identities = 547/657 (83%), Positives = 548/657 (83%), Gaps = 3/657 (0%)
Frame = +2
Query: 8 RGNLRARQRAGPASGSGCFGNMLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRK 187
RGNLRARQRAGPASGSGCFGNMLAELGLIGTIG GPIVLGRK
Sbjct: 1 RGNLRARQRAGPASGSGCFGNMLAELGLIGTIGEDDEVPVEPETDSEDEEEEGPIVLGRK 60
Query: 188 QKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKT 367
QKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKT
Sbjct: 61 QKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKT 120
Query: 368 EDKEAKSGNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRV 547
EDKEAKSGNSD ADENILTKADTLRV
Sbjct: 121 EDKEAKSGNSDEKEVKEGSEPEEQEDLEGKDEEGSEGEESETDYSSADENILTKADTLRV 180
Query: 548 KERXXXXXGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVG 727
KER GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVG
Sbjct: 181 KERKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVG 240
Query: 728 LLGKDIXXXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL 907
LLGKDI LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL
Sbjct: 241 LLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL 300
Query: 908 AQFCSITTCLAVGGLDVKSQEAALRAAP--DILIATPGRLIDHLHNCPSFHLSSIEVLIL 1081
AQF L GGLDVKSQEAALRAAP DILIATPGRLIDHLHNCPSFHLSSIEVLIL
Sbjct: 301 AQFXXXXXXLFAGGLDVKSQEAALRAAPXPDILIATPGRLIDHLHNCPSFHLSSIEVLIL 360
Query: 1082 DEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 1261
DEADRMLDEYFEEQMKEIIRMCS HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD
Sbjct: 361 DEADRMLDEYFEEQMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 420
Query: 1262 VAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV 1441
VAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV
Sbjct: 421 VAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQV 480
Query: 1442 GELHGNLSQTQR-LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 1618
GELHGNLSQTQR LEAL RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH
Sbjct: 481 GELHGNLSQTQRXLEALWRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 540
Query: 1619 XXXXXXXXXXXXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD 1798
SVSL LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD
Sbjct: 541 RVGRTARAGRAGRSVSLXXXXXXXXLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD 600
Query: 1799 VYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
VYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK A+
Sbjct: 601 VYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAK 657
>ref|XP_003360085.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Sus
scrofa].
Length = 421
Score = 534 bits (1375), Expect = e-152
Identities = 276/291 (94%), Positives = 277/291 (95%)
Frame = +2
Query: 1097 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFL 1276
MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFL
Sbjct: 1 MLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFL 60
Query: 1277 RQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG 1456
RQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG
Sbjct: 61 RQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG 120
Query: 1457 NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXX 1636
NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH
Sbjct: 121 NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTA 180
Query: 1637 XXXXXXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQ 1816
SVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQ
Sbjct: 181 RAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQ 240
Query: 1817 LEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
LEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK A+
Sbjct: 241 LEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAK 291
>ref|XP_003360087.1| PREDICTED: hypothetical protein LOC100626268 [Sus scrofa].
Length = 562
Score = 272 bits (695), Expect = 6e-73
Identities = 151/217 (69%), Positives = 153/217 (70%)
Frame = +2
Query: 71 MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
MLAELGLIGTIG GPIVLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1 MLAELGLIGTIGEDDEVPVEPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEK 60
Query: 251 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSD
Sbjct: 61 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDEKEVKEGSEP 120
Query: 431 XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
ADENI ++ RVKER GQEAGGFFEDASQ
Sbjct: 121 EEQEDLEGKDEEGSEGEESETDYSSADENIPHQS---RVKERKKKKKGQEAGGFFEDASQ 177
Query: 611 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP 721
YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP
Sbjct: 178 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIP 214
>ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa].
Length = 473
Score = 215 bits (547), Expect = 8e-56
Identities = 126/341 (36%), Positives = 194/341 (56%)
Frame = +2
Query: 596 EDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXX 775
+ A + +E +F+D+ ++ L +A +G+ +PT IQ IP+ L G+DI
Sbjct: 68 QTAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGK 127
Query: 776 XXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 955
LP+L L+ P++ LVL PTREL Q+ + L + + VGG+D
Sbjct: 128 TGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 184
Query: 956 VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 1135
SQ AL P I+IATPGRLIDHL N F+L +++ L++DEADR+L+ FE ++ +I
Sbjct: 185 SMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 244
Query: 1136 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 1315
+++ R+T LFSATMT +V+ L +LKNPV+ V+S L+Q ++ I P++
Sbjct: 245 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PSK-- 301
Query: 1316 DREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRR 1495
++ + +L + M+F T R +LL +G LHG +SQ++RL +L +
Sbjct: 302 FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNK 361
Query: 1496 FKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 1618
FK + IL+ATDVA+RGLDI V V+NF +P K Y+H
Sbjct: 362 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIH 402
>ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
scrofa].
Length = 483
Score = 194 bits (494), Expect = 1e-49
Identities = 132/452 (29%), Positives = 227/452 (50%), Gaps = 7/452 (1%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
F ++ LS L++ +G KQPTP+Q CIP L G+D LP+L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L P LVL PTREL Q+ + L + + C+ VGG+D+ +Q L
Sbjct: 64 LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
P ++IATPGRL DHL + +F + I L++DEADR+L++ F ++ I+ R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+LFSAT+TD +++L S++ P + L Q ++ + E ++A +
Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLV---PEKVKDAYLVH 237
Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
L+ +H +++FT T K + ++L LH + Q +R AL +FK
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
IL+ATDVA+RGLDI V+ VIN P K Y+H +++LV + +
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
++ I + K ++ + + +L+ ++ + ++ ++LEA + +K +IN
Sbjct: 358 HLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRE--CEIKLEAANFDEKK---EINK 412
Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
++++ +GK+ P+ E +R K ++K +F
Sbjct: 413 RKQMILEGKD-PDLEAKRKAELAKIKQKNRRF 443
>ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
scrofa].
Length = 483
Score = 194 bits (494), Expect = 1e-49
Identities = 132/452 (29%), Positives = 227/452 (50%), Gaps = 7/452 (1%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
F ++ LS L++ +G KQPTP+Q CIP L G+D LP+L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L P LVL PTREL Q+ + L + + C+ VGG+D+ +Q L
Sbjct: 64 LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
P ++IATPGRL DHL + +F + I L++DEADR+L++ F ++ I+ R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+LFSAT+TD +++L S++ P + L Q ++ + E ++A +
Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLV---PEKVKDAYLVH 237
Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
L+ +H +++FT T K + ++L LH + Q +R AL +FK
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
IL+ATDVA+RGLDI V+ VIN P K Y+H +++LV + +
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
++ I + K ++ + + +L+ ++ + ++ ++LEA + +K +IN
Sbjct: 358 HLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRE--CEIKLEAANFDEKK---EINK 412
Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
++++ +GK+ P+ E +R K ++K +F
Sbjct: 413 RKQMILEGKD-PDLEAKRKAELAKIKQKNRRF 443
>ref|XP_001927639.2| PREDICTED: ATP-dependent RNA helicase DDX18 [Sus scrofa].
Length = 672
Score = 178 bits (451), Expect = 1e-44
Identities = 131/412 (31%), Positives = 204/412 (49%), Gaps = 6/412 (1%)
Frame = +2
Query: 587 GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
G FED S S D+ ++ L+AI MGF T IQ I L G+D+
Sbjct: 174 GAFEDTSF----ASLTDL-VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTG 228
Query: 767 XXXXXXXXLPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 937
+P +E ++ + PR T VL+L PTREL +Q V K+L T L
Sbjct: 229 SGKTLAFLIPAVELIVKLRFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGL 286
Query: 938 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 1117
+GG + ++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FE
Sbjct: 287 IMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFE 346
Query: 1118 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEF 1288
E++K+II++ RQTMLFSAT T +V+DLA +SL K P+ + V+ + A L Q +
Sbjct: 347 EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGY 406
Query: 1289 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 1468
+ + P+ + R ++ L + +M+F + K + LL + L V +HG Q
Sbjct: 407 V-VCPSEK--RFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQ 463
Query: 1469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXX 1648
+R +F + IL+ TDVAARGLDI V ++ + P+ K Y+H
Sbjct: 464 NKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLN 523
Query: 1649 XXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
L+ E +K +K P+ I + ++EK+ + Y
Sbjct: 524 GRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNY 575
>ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Sus scrofa].
Length = 646
Score = 169 bits (428), Expect = 5e-42
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 165 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 225 QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 282
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 283 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 341
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 342 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 401
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D + L F +TKK A + L G +HG+
Sbjct: 402 KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 458
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 459 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 518
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 519 VGNLGLATSFFNERNANITKDLL 541
>ref|XP_003360320.1| PREDICTED: ATP-dependent RNA helicase DDX3X [Sus scrofa].
Length = 662
Score = 169 bits (428), Expect = 5e-42
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 298
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 357
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D + L F +TKK A + L G +HG+
Sbjct: 418 KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 535 VGNLGLATSFFNERNANITKDLL 557
>ref|XP_003360577.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
scrofa].
Length = 644
Score = 168 bits (426), Expect = 9e-42
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 165 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 225 QIYTDGPGEALKAVKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 282
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 283 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 341
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 342 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 401
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D + L F +TKK A + L G +HG+
Sbjct: 402 KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 458
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 459 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 518
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 519 VGNLGLATSFFNERNINITKDLL 541
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,464,045
Number of extensions: 1348396
Number of successful extensions: 5744
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5554
Number of HSP's successfully gapped: 57
Length of query: 662
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 557
Effective length of database: 8,729,747
Effective search space: 4862469079
Effective search space used: 4862469079
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008343
(1988 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus ... 972 0.0
Alignment gi|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus ... 222 7e-58
Alignment gi|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [M... 199 9e-51
Alignment gi|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]. 197 3e-50
Alignment gi|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus]. 186 8e-47
Alignment gi|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus ... 170 3e-42
Alignment gi|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus m... 169 7e-42
Alignment gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu... 168 2e-41
Alignment gi|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [M... 167 4e-41
Alignment gi|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [M... 166 8e-41
>ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus].
Length = 760
Score = 972 bits (2513), Expect = 0.0
Identities = 516/633 (81%), Positives = 531/633 (83%)
Frame = +2
Query: 71 MLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLGRKQKALQKNRSADFNPDFVFTEK 250
MLAELG I TIG GPIVLGRKQKALQKNRSADFNPDFVFTEK
Sbjct: 1 MLAELGFIRTIGENDEVPVEPESDSGDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEK 60
Query: 251 EGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGNSDXXXXXXXXXX 430
EGMYDGSWA+ADVMSQLKKKRAATTLDEKIEKVRK+RK EDKEAKSG +
Sbjct: 61 EGMYDGSWALADVMSQLKKKRAATTLDEKIEKVRKRRKAEDKEAKSGKVEEKEGQADSDL 120
Query: 431 XXXXXXXXXXXXXXXXXXXXXXXXXADENILTKADTLRVKERXXXXXGQEAGGFFEDASQ 610
DE ILTKADTL+VKE+ GQ AGGFFEDAS+
Sbjct: 121 KGQENPGEDEAGSKDEDSETDYSSE-DEEILTKADTLKVKEKKKKKKGQAAGGFFEDASE 179
Query: 611 YDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
YD++LSFQDMNLSRPLLKAIT MGFKQPTPIQKACIPVGLLGKDI
Sbjct: 180 YDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 239
Query: 791 LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 970
LPVLERLIYKPRQA VTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE
Sbjct: 240 LPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 299
Query: 971 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 1150
AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS
Sbjct: 300 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 359
Query: 1151 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 1330
HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI
Sbjct: 360 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 419
Query: 1331 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 1510
VAALLMRTFTDHVMLFTQTKKQAHRMHILLGL+GLQVGELHGNLSQTQRLEALRRFKDEQ
Sbjct: 420 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQ 479
Query: 1511 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERK 1690
IDILVATDVAARGLDIEGVKTVINFTMPNT+KHYVH SVSLVGEEERK
Sbjct: 480 IDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERK 539
Query: 1691 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 1870
MLKEIVKAAKAPVKARILPQDVILKFRDKIEK+EKDVYAVLQLEAEEKEMQ+SEAQI+TA
Sbjct: 540 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTA 599
Query: 1871 QRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
QRLL KGKE + EPERSWFQTKEERKKEK A+
Sbjct: 600 QRLLAKGKETADQEPERSWFQTKEERKKEKIAK 632
>ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus].
Length = 455
Score = 222 bits (566), Expect = 7e-58
Identities = 133/423 (31%), Positives = 226/423 (53%)
Frame = +2
Query: 587 GFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXX 766
G + A++ +E +F+D+ ++ L +A +G+ +PT IQ IP+ L G+DI
Sbjct: 12 GALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 767 XXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVG 946
LP+L L+ P++ LVL PTREL Q+ + L + + VG
Sbjct: 72 SGKTGAFALPILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVG 128
Query: 947 GLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQM 1126
G+D SQ AL P I+IATPGRLIDHL N F+L +++ L++DEADR+L+ FE ++
Sbjct: 129 GIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV 188
Query: 1127 KEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPN 1306
+I+++ R+T LFSATMT +V+ L +LKNPV+ V+S L+Q ++ I P+
Sbjct: 189 DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI-PS 247
Query: 1307 REGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 1486
+ ++ + +L + M+F T R +LL +G LHG +SQ++RL +
Sbjct: 248 K--FKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGS 305
Query: 1487 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVS 1666
L +FK + IL+ATDVA+RGLDI V V+NF +P K Y+H +++
Sbjct: 306 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365
Query: 1667 LVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQK 1846
V + + ++ + I + + ++ +++ + ++ L+ E+K+ ++
Sbjct: 366 FVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHGEKKKRKR 425
Query: 1847 SEA 1855
+A
Sbjct: 426 EDA 428
>ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus].
Length = 480
Score = 199 bits (505), Expect = 9e-51
Identities = 134/453 (29%), Positives = 229/453 (50%), Gaps = 8/453 (1%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
F ++ LS L++ +G KQPTP+Q CIP L G+D LP+L++
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L P LVL PTREL Q+ + L + + C+ VGG+D+ +Q L
Sbjct: 64 LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
P ++IATPGRL DHL + +F++ I+ L++DEADR+L++ F ++ I+ R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+LFSAT+TD +K+L ++ P + L Q ++ + P + D +
Sbjct: 181 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLV-PEKVKDAYLV--- 236
Query: 1340 LLMRTFTDH-----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD 1504
L++TF D +++FT T K + ++L LH + Q +R AL +FK
Sbjct: 237 HLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKS 296
Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
IL+ATDVA+RGLDI V+ VIN P K Y+H +++LV + +
Sbjct: 297 SIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 1864
+L I + K + ++ + +L+ ++ + ++ ++LEA + +K +IN
Sbjct: 357 IHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRE--CEIKLEASHFDEKK---EIN 411
Query: 1865 TAQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
++++ +GK+ P+ E +R K +++ +F
Sbjct: 412 KRKQMILEGKD-PDLEAKRKAELAKIKQQNRRF 443
>ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus].
Length = 874
Score = 197 bits (501), Expect = 3e-50
Identities = 143/441 (32%), Positives = 217/441 (49%), Gaps = 13/441 (2%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
FQ M LS P+ K I G+K PTPIQ+ IPV L GKD+ LP+ ER
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 809 LIYKPRQAPV-TRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 985
L K R A R L+L PTREL +Q TK+L +F + T L +GG ++ Q AAL
Sbjct: 157 L--KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 214
Query: 986 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 1165
PDI+IATPGRL+ H+ + L S+E ++ DEADR+ + F EQ++EII QT
Sbjct: 215 NPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQT 273
Query: 1166 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 1345
+LFSAT+ + + A L PV I ++ ++ + L+ F+ + RE + A++ LL
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLV---REDTKAAVLLYLL 330
Query: 1346 MRTF--TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 1519
D ++F TK A + LL G+ ++ L QT R L +F +
Sbjct: 331 QNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCST 390
Query: 1520 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLK 1699
L+ TD+AARGLDI + VIN++ P K ++H + SLV +E L
Sbjct: 391 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLL 450
Query: 1700 E----------IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKS 1849
+ + + + P A + +D +L R ++ + ++ ++Q
Sbjct: 451 DLHLFLGRSVTLARPCEEPSVADAVGRDGVLG-RVPQSVVDDEDSSLQTAMGASLDLQGL 509
Query: 1850 EAQINTAQRLLEKGKEAPNPE 1912
N AQ+ + + AP+PE
Sbjct: 510 HRVANNAQQQYVRSRPAPSPE 530
>ref|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus].
Length = 660
Score = 186 bits (471), Expect = 8e-47
Identities = 130/404 (32%), Positives = 206/404 (50%), Gaps = 8/404 (1%)
Frame = +2
Query: 617 ENLSFQDMN--LSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXX 790
E+ SF ++ ++ LKAI MGFK+ T IQ I L G+D+
Sbjct: 165 EDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 224
Query: 791 LPVLERLI---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
+PV+E ++ + PR T VL+L PTREL +Q V K+L T L +GG +
Sbjct: 225 IPVIELIVKLKFMPRNG--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 282
Query: 962 SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 1141
++ L +I++ATPGRL+DH+ N P F +++ L++DEADR+LD FEE++K+II+
Sbjct: 283 AEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 342
Query: 1142 MCSHHRQTMLFSATMTDEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEFIRIRPNRE 1312
+ RQTMLFSAT T +V+DLA +SL K P+ + V+ + +VA L Q ++ + P+ +
Sbjct: 343 LLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYV-VCPSEK 401
Query: 1313 GDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 1492
R ++ L + VM+F + + LL + L V +HG Q +R
Sbjct: 402 --RFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFF 459
Query: 1493 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLV 1672
+F + IL+ TDVAARGLDI V ++ + P+ K Y+H L+
Sbjct: 460 QFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLI 519
Query: 1673 GEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 1804
E +K +K P+ + + ++EK+ + Y
Sbjct: 520 LRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNY 563
>ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus].
Length = 875
Score = 170 bits (431), Expect = 3e-42
Identities = 119/396 (30%), Positives = 196/396 (49%), Gaps = 6/396 (1%)
Frame = +2
Query: 614 DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
+E F D LS+ LK + ++ T IQK I + L GKD+ +
Sbjct: 66 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125
Query: 794 PVLERLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ 967
PVLE L Y+ + VL++ PTREL Q V +++ + + L +GG D+K +
Sbjct: 126 PVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184
Query: 968 EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 1147
+ +IL+ TPGRL+ H+ FH +++++L+LDEADR+LD F + M II
Sbjct: 185 AERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENL 243
Query: 1148 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNT--DVAPFLRQEFIRIRPNREGDR 1321
RQT+LFSAT T VKDLA +SLK+P ++V+ L Q +I +++
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQK--I 301
Query: 1322 EAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRF 1498
+ + L ++ F+ K+ + + L G+ + LHG Q +R+E F
Sbjct: 302 SVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEF 361
Query: 1499 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXS-VSLVG 1675
++ +L ATD+AARGLD V V+ F P Y+H + + L+
Sbjct: 362 VRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLP 421
Query: 1676 EEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIE 1783
EE+ M++++++ K PVK + + ++ + K+E
Sbjct: 422 SEEQGMVQQLLQ-KKVPVKEIKINPEKLIDVQKKLE 456
>ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus].
Length = 660
Score = 169 bits (428), Expect = 7e-42
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 240 QIYTDGPGEALRAMKENGKYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 297
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 298 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 356
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 357 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 416
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D ++L F +TKK A + L G +HG+
Sbjct: 417 KVVWVE---EADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGD 473
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 474 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 533
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 534 VGNLGLATSFFNERNINITKDLL 556
>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
Length = 406
Score = 168 bits (425), Expect = 2e-41
Identities = 108/391 (27%), Positives = 195/391 (49%), Gaps = 5/391 (1%)
Frame = +2
Query: 548 KERXXXXXGQEAGGFFEDASQYDENL-SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPV 724
+ R G E G E S ++E + SF DMNLS LL+ I GF++P+ IQ+ I
Sbjct: 8 RSRDNGPDGMEPEGVIE--SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP 65
Query: 725 GLLGKDIXXXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQ 904
+ G D+ + +L+++ T+ LVL PTREL Q+ V
Sbjct: 66 CIKGYDVIAQAQSGTGKTATFAISILQQI---ELDLKATQALVLAPTRELAQQIQKVVMA 122
Query: 905 LAQFCSITTCLAVGGLDVKSQEAALRA-APDILIATPGRLIDHLHN---CPSFHLSSIEV 1072
L + + +GG +V+++ L+ AP I++ TPGR+ D L+ P + I++
Sbjct: 123 LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY----IKM 178
Query: 1073 LILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNS 1252
+LDEAD ML F++Q+ +I + + + Q +L SATM +V ++ +++P+RI V
Sbjct: 179 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 238
Query: 1253 NTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMG 1432
+RQ +I + RE + + L ++F T+++ + +
Sbjct: 239 EELTLEGIRQFYINVE--REEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 1433 LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHY 1612
V +HG++ Q +R +R F+ +L+ TD+ ARG+D++ V VIN+ +P ++Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 1613 VHXXXXXXXXXXXXXSVSLVGEEERKMLKEI 1705
+H ++++V EE+++ L++I
Sbjct: 357 IHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 387
>ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus].
Length = 819
Score = 167 bits (422), Expect = 4e-41
Identities = 122/405 (30%), Positives = 195/405 (48%), Gaps = 35/405 (8%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
S++D +L +L+ I G+K+PTPIQ+ IP+GL +DI +P+L
Sbjct: 391 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450
Query: 806 RLIYKPR--------QAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVK 961
+ P+ Q P ++L PTREL Q+ T + + I T +GG+ +
Sbjct: 451 WITTLPKIDRIEESDQGPYA--IILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISRE 508
Query: 962 SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII- 1138
Q LR +I+IATPGRLID L N LS ++LDEADRM+D FE +++I+
Sbjct: 509 DQGFRLRMGCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 567
Query: 1139 ------------------RMCSH-------HRQTMLFSATMTDEVKDLASVSLKNPVRIF 1243
+M ++ +RQT++F+ATM V+ LA L+ P ++
Sbjct: 568 HMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVY 627
Query: 1244 VNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLG 1423
+ S + Q+ + E ++ + A+L + F +++F KK + L
Sbjct: 628 IGSAGKPHERVEQKVFLM---SESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLE 684
Query: 1424 LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTI 1603
MG LHG Q QR AL K DILVATDVA RG+DI+ V V+N+ M I
Sbjct: 685 KMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNI 744
Query: 1604 KHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKEIVKA-AKAPVKA 1735
+ Y+H +++ + +E+ + E+ +A ++PV +
Sbjct: 745 EDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSS 789
>ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus].
Length = 407
Score = 166 bits (419), Expect = 8e-41
Identities = 109/382 (28%), Positives = 196/382 (51%), Gaps = 4/382 (1%)
Frame = +2
Query: 572 GQEAGGFFEDASQYDENL-SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIX 748
G + G E S ++E + +F DMNL LL+ I GF++P+ IQ+ I + G D+
Sbjct: 17 GMDPDGVIE--SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVI 74
Query: 749 XXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSIT 928
+ +L++L + ++ T+ LVL PTREL Q+ V L + T
Sbjct: 75 AQAQSGTGKTATFAISILQQLEIEFKE---TQALVLAPTRELAQQIQKVILALGDYMGAT 131
Query: 929 TCLAVGGLDVKSQEAALRA-APDILIATPGRLIDHLHNCPSFHLSS--IEVLILDEADRM 1099
+GG +V+++ L+A AP I++ TPGR+ D L+ +LS I++ +LDEAD M
Sbjct: 132 CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YLSPKWIKMFVLDEADEM 188
Query: 1100 LDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLR 1279
L F++Q+ EI + + Q +L SATM +V ++ +++P+RI V ++
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 1280 QEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGN 1459
Q +I + RE + + L ++F T+++ + + V LHG+
Sbjct: 249 QFYINVE--REEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
+ Q +R +R F+ +L+ TD+ ARG+D++ V VIN+ +P ++Y+H
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 1640 XXXXXXSVSLVGEEERKMLKEI 1705
+++ V EE++++L++I
Sbjct: 367 FGRKGVAINFVTEEDKRILRDI 388
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,556,320
Number of extensions: 1754190
Number of successful extensions: 7249
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 7005
Number of HSP's successfully gapped: 65
Length of query: 662
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 554
Effective length of database: 12,373,671
Effective search space: 6855013734
Effective search space used: 6855013734
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008343
(1988 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo... 994 0.0
Alignment gi|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isofo... 221 1e-57
Alignment gi|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo... 196 5e-50
Alignment gi|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Hom... 188 2e-47
Alignment gi|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [... 188 2e-47
Alignment gi|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo... 175 1e-43
Alignment gi|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens]. 173 5e-43
Alignment gi|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Hom... 168 1e-41
Alignment gi|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [... 168 1e-41
Alignment gi|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [... 168 1e-41
>ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens].
Length = 796
Score = 994 bits (2571), Expect = 0.0
Identities = 535/658 (81%), Positives = 548/658 (83%), Gaps = 2/658 (0%)
Frame = +2
Query: 2 GSRGNLRARQRAGPASGSGCFGNMLAELGLIGTIGXXXXXXXXXXXXXXXXXXXGPIVLG 181
G LRA +A ASGSG NMLA+LGLIGTIG GPIVLG
Sbjct: 9 GGCEKLRAGPQAVLASGSGFCDNMLADLGLIGTIGEDDEVPVEPESDSGDEEEEGPIVLG 68
Query: 182 RKQKALQKNRSADFNPDFVFTEKEGMYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKR 361
R+QKAL KNRSADFNPDFVFTEKEG YDGSWA+ADVMSQLKKKRAATTLDEKIEKVRKKR
Sbjct: 69 RRQKALGKNRSADFNPDFVFTEKEGTYDGSWALADVMSQLKKKRAATTLDEKIEKVRKKR 128
Query: 362 KTEDKEAKSGNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ADENILTKADT 538
KTEDKEAKSG + ADENILTKADT
Sbjct: 129 KTEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILTKADT 188
Query: 539 LRVKERXXXXX-GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKAC 715
L+VK+R GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAIT MGFKQPTPIQKAC
Sbjct: 189 LKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKAC 248
Query: 716 IPVGLLGKDIXXXXXXXXXXXXXXXLPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSV 895
IPVGLLGKDI LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSV
Sbjct: 249 IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSV 308
Query: 896 TKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVL 1075
T+QLAQFC+ITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVL
Sbjct: 309 TRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVL 368
Query: 1076 ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSN 1255
ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSN
Sbjct: 369 ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSN 428
Query: 1256 TDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGL 1435
TDVAPFLRQEFIRIRPNREGDREAIVAALL RTFTDHVMLFTQTKKQAHRMHILLGLMGL
Sbjct: 429 TDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGL 488
Query: 1436 QVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYV 1615
QVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYV
Sbjct: 489 QVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYV 548
Query: 1616 HXXXXXXXXXXXXXSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK 1795
H SVSLVGE+ERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK
Sbjct: 549 HRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK 608
Query: 1796 DVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKFAR 1969
DVYAVLQLEAEEKEMQ+SEAQINTA+RLLEKGKEA EPERSWFQTKEERKKEK A+
Sbjct: 609 DVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAK 666
>ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens].
Length = 455
Score = 221 bits (564), Expect = 1e-57
Identities = 134/417 (32%), Positives = 222/417 (53%)
Frame = +2
Query: 614 DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
+E +F+D+ ++ L +A +G+ +PT IQ IP+ L G+DI L
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 794 PVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEA 973
P+L L+ P++ LVL PTREL Q+ + L + + + VGG+D SQ
Sbjct: 81 PILNALLETPQRL---FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137
Query: 974 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH 1153
AL P I+IATPGRLIDHL N F+L +++ L++DEADR+L+ FE ++ +I+++
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197
Query: 1154 HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 1333
R+T LFSATMT +V+ L +LKNPV+ V+S L+Q +I I P++ ++ +
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFI-PSK--FKDTYL 254
Query: 1334 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 1513
+L + M+F T R +LL +G LHG +SQ++RL +L +FK +
Sbjct: 255 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 1514 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKM 1693
IL+ATDVA+RGLDI V V+NF +P K Y+H +++ V + + ++
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
Query: 1694 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQIN 1864
+ I + D ++ +++ + ++ L+ E+K+ + +A N
Sbjct: 375 FQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDN 431
>ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens].
Length = 483
Score = 196 bits (499), Expect = 5e-50
Identities = 133/452 (29%), Positives = 227/452 (50%), Gaps = 7/452 (1%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
F ++ LS L++ +G KQPTP+Q CIP L G+D LP+L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L P LVL PTREL Q+ + L + + C+ VGG+D+ +Q L
Sbjct: 64 LSEDPYGI---FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE---YFEEQMKEIIRMCSHHR 1159
P ++IATPGRL DHL + +F + I L++DEADR+L++ F ++ I+ R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 1160 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 1339
QT+LFSAT+TD +++L ++ P + L Q ++ + E ++A +
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLV---PEKVKDAYLVH 237
Query: 1340 LLMRTFTDH----VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 1507
L+ R +H +++FT T K + ++L LH + Q +R AL +FK
Sbjct: 238 LIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSS 297
Query: 1508 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEER 1687
IL+ATDVA+RGLDI V+ VIN P K Y+H +++LV + +
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Query: 1688 KMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 1867
++ I + K ++ + + +L+ ++ + ++ ++LEA + +K +IN
Sbjct: 358 HLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRE--CEIKLEAAHFDEKK---EINK 412
Query: 1868 AQRLLEKGKEAPNPEPERSWFQTKEERKKEKF 1963
++L+ +GK+ P+ E +R K ++K +F
Sbjct: 413 RKQLILEGKD-PDLEAKRKAELAKIKQKNRRF 443
>ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens].
Length = 881
Score = 188 bits (477), Expect = 2e-47
Identities = 128/361 (35%), Positives = 183/361 (50%), Gaps = 2/361 (0%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
FQ M LS P+ K I G+K PTPIQ+ IPV L GKD+ LP+ ER
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L Q R L+L PTREL +Q TK+L +F + T L +GG ++ Q AAL
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 1168
PDI+IATPGRL+ H+ S L S+E ++ DEADR+ + F EQ++EII QT+
Sbjct: 217 PDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTV 275
Query: 1169 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 1348
LFSAT+ + + A L PV I ++ +T + L+ F + RE + A++ LL
Sbjct: 276 LFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLV---REDTKAAVLLHLLH 332
Query: 1349 RTF--TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 1522
D ++F TK A + LL + ++ L T R L +F + L
Sbjct: 333 NVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTL 392
Query: 1523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKE 1702
+ TD+AARGLDI + VIN++ P K ++H + SLV +E L +
Sbjct: 393 IVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLD 452
Query: 1703 I 1705
+
Sbjct: 453 L 453
>ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens].
Length = 882
Score = 188 bits (477), Expect = 2e-47
Identities = 128/361 (35%), Positives = 183/361 (50%), Gaps = 2/361 (0%)
Frame = +2
Query: 629 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLER 808
FQ M LS P+ K I G+K PTPIQ+ IPV L GKD+ LP+ ER
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 809 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 988
L Q R L+L PTREL +Q TK+L +F + T L +GG ++ Q AAL
Sbjct: 158 LKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 216
Query: 989 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 1168
PDI+IATPGRL+ H+ S L S+E ++ DEADR+ + F EQ++EII QT+
Sbjct: 217 PDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTV 275
Query: 1169 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 1348
LFSAT+ + + A L PV I ++ +T + L+ F + RE + A++ LL
Sbjct: 276 LFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLV---REDTKAAVLLHLLH 332
Query: 1349 RTF--TDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 1522
D ++F TK A + LL + ++ L T R L +F + L
Sbjct: 333 NVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTL 392
Query: 1523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKE 1702
+ TD+AARGLDI + VIN++ P K ++H + SLV +E L +
Sbjct: 393 IVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLD 452
Query: 1703 I 1705
+
Sbjct: 453 L 453
>ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens].
Length = 875
Score = 175 bits (444), Expect = 1e-43
Identities = 117/395 (29%), Positives = 193/395 (48%), Gaps = 3/395 (0%)
Frame = +2
Query: 614 DENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXL 793
+E F D LS+ LK + ++ T IQK I + L GKD+ +
Sbjct: 66 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 125
Query: 794 PVLERLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQ 967
PVLE L Y+ + VL++ PTREL Q V +++ + + L +GG D+K +
Sbjct: 126 PVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184
Query: 968 EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 1147
+ +IL+ TPGRL+ H+ SFH + +++L+LDEADR+LD F + M +I
Sbjct: 185 AERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 243
Query: 1148 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 1327
RQT+LFSAT T VKDLA +SLKNP ++V+ + E I +
Sbjct: 244 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISV 303
Query: 1328 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLM-GLQVGELHGNLSQTQRLEALRRFKD 1504
+ + L ++ F+ K+ + + L G+ + LHG Q +R+E F
Sbjct: 304 LYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363
Query: 1505 EQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEE 1684
++ +L ATD+AARGLD V V+ F P Y+H ++ ++ E
Sbjct: 364 KRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423
Query: 1685 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKM 1789
+ M++++++ K PVK + + ++ + K+E +
Sbjct: 424 KAMVQQLLQ-KKVPVKEIKINPEKLIDVQKKLESI 457
>ref|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens].
Length = 670
Score = 173 bits (439), Expect = 5e-43
Identities = 123/388 (31%), Positives = 192/388 (49%), Gaps = 6/388 (1%)
Frame = +2
Query: 659 LKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLERLI---YKPRQ 829
LKAI MGF T IQ I L G+D+ +P +E ++ + PR
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRN 250
Query: 830 APVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIAT 1009
T VL+L PTREL +Q V K+L T L +GG + ++ L +I++AT
Sbjct: 251 G--TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 308
Query: 1010 PGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMT 1189
PGRL+DH+ N P F +++ L++DEADR+LD FEE++K+II++ RQTMLFSAT T
Sbjct: 309 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 368
Query: 1190 DEVKDLASVSL-KNPVRIFVNSNTDVAPF--LRQEFIRIRPNREGDREAIVAALLMRTFT 1360
+V+DLA +SL K P+ + V+ + A L Q ++ + P+ + R ++ L +
Sbjct: 369 RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV-VCPSEK--RFLLLFTFLKKNRK 425
Query: 1361 DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 1540
+M+F + + LL + L V +HG Q +R +F + L+ TDVA
Sbjct: 426 KKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVA 485
Query: 1541 ARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXXXXXXXXSVSLVGEEERKMLKEIVKAAK 1720
ARGLDI V ++ + P+ K Y+H L+ E +K +K
Sbjct: 486 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSK 545
Query: 1721 APVKARILPQDVILKFRDKIEKMEKDVY 1804
P+ I + ++EK+ + Y
Sbjct: 546 VPLSEFDFSWSKISDIQSQLEKLIEKNY 573
>ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens].
Length = 662
Score = 168 bits (426), Expect = 1e-41
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 298
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 357
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D + L F +TKK A + L G +HG+
Sbjct: 418 KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 535 VGNLGLATSFFNERNINITKDLL 557
>ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens].
Length = 646
Score = 168 bits (426), Expect = 1e-41
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 165 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 224
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 225 QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 282
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 283 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 341
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 342 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 401
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D + L F +TKK A + L G +HG+
Sbjct: 402 KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 458
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 459 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 518
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 519 VGNLGLATSFFNERNINITKDLL 541
>ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens].
Length = 661
Score = 168 bits (426), Expect = 1e-41
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 22/383 (5%)
Frame = +2
Query: 626 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDIXXXXXXXXXXXXXXXLPVLE 805
SF D+ + ++ I + + +PTP+QK IP+ +D+ LP+L
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 806 RLIY-----------------KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 934
++ + +Q P++ LVL PTREL +Q++ ++ + + C
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPIS--LVLAPTRELAVQIYEEARKFSYRSRVRPC 298
Query: 935 LAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF 1114
+ GG D+ Q L +L+ATPGRL+D + L + L+LDEADRMLD F
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGF 357
Query: 1115 EEQMKEIIRMCSHH----RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQ 1282
E Q++ I+ + R TM+FSAT E++ LA L + + V + + Q
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417
Query: 1283 EFIRIRPNREGDREAIVAALLMRTFTDHVML-FTQTKKQAHRMHILLGLMGLQVGELHGN 1459
+ + + E D+ + + LL T D + L F +TKK A + L G +HG+
Sbjct: 418 KVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 474
Query: 1460 LSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHXXXXXXX 1639
SQ R EAL +F+ + ILVAT VAARGLDI VK VINF +P+ I+ YVH
Sbjct: 475 RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 534
Query: 1640 XXXXXXSVSLVGEEERKMLKEIV 1708
+ S E + K+++
Sbjct: 535 VGNLGLATSFFNERNINITKDLL 557
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,250,855
Number of extensions: 2105721
Number of successful extensions: 8807
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 8592
Number of HSP's successfully gapped: 59
Length of query: 662
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,704,088
Effective search space: 8131360664
Effective search space used: 8131360664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008343
(1988 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 355 6e-95
gb|GL896282.2| Sus scrofa unplaced genomic scaffold ChrUScaf4166 327 1e-86
>Sscrofa_Chr17
|| Length = 69701581
Score = 355 bits (179), Expect = 6e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 1573 ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230528 ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 57230469
Query: 1633 agctcgtgctggccgggctgggcgctcagtctctctggtgggagaagaggagcggaagat 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230468 agctcgtgctggccgggctgggcgctcagtctctctggtgggagaagaggagcggaagat 57230409
Query: 1693 gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 1751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230408 gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 57230350
Score = 325 bits (164), Expect = 5e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1 cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117966 cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 57117907
Query: 61 tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117906 tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 57117847
Query: 121 gccagtggagccagagacggactccgaagacgaggaggaggagg 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117846 gccagtggagccagagacggactccgaagacgaggaggaggagg 57117803
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 1332 tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57232462 tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 57232403
Query: 1392 agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57232402 agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 57232343
Query: 1452 atggcaacctgtcacagacacagcggttggaggccctccgg 1492
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 57232342 atggcaacctgtcacagacacagcggttggaggccctccgg 57232302
Score = 313 bits (158), Expect = 2e-82
Identities = 165/166 (99%), Gaps = 1/166 (0%)
Strand = Plus / Minus
Query: 369 aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57114808 aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 57114749
Query: 429 cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57114748 cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 57114689
Query: 489 agactgactactcatcagcagatgagaaca-tcctcaccaaagcag 533
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 57114688 agactgactactcatcagcagatgagaacattcctcaccaaagcag 57114643
Score = 295 bits (149), Expect = 5e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 162 aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117289 aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 57117230
Query: 222 tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57117229 tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 57117170
Query: 282 ctgatgtcatgagccagctcaagaagaag 310
|||||||||||||||||||||||||||||
Sbjct: 57117169 ctgatgtcatgagccagctcaagaagaag 57117141
Score = 285 bits (144), Expect = 5e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1194 aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57233791 aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 57233732
Query: 1254 acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57233731 acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 57233672
Query: 1314 gggaccgggaagccattgtggcag 1337
||||||||||||||||||||||||
Sbjct: 57233671 gggaccgggaagccattgtggcag 57233648
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 663 aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57113105 aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 57113046
Query: 723 tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57113045 tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 57112992
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 1750 agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57229070 agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 57229011
Query: 1810 tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 1858
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57229010 tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 57228962
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 1093 caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccca 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57234024 caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccca 57233965
Query: 1153 ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 1198
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57233964 ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 57233919
Score = 208 bits (105), Expect = 9e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1856 cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57228792 cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 57228733
Query: 1916 gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 1960
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57228732 gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 57228688
Score = 178 bits (90), Expect = 8e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 576 aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57113886 aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 57113827
Query: 636 acatgaacctttcccgccctcttctgaagg 665
||||||||||||||||||||||||||||||
Sbjct: 57113826 acatgaacctttcccgccctcttctgaagg 57113797
Score = 168 bits (85), Expect = 7e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1491 ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57230722 ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 57230663
Query: 1551 ttgacattgagggggtcaaaacggt 1575
|||||||||||||||||||||||||
Sbjct: 57230662 ttgacattgagggggtcaaaacggt 57230638
Score = 125 bits (63), Expect = 1e-25
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 309 agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57115133 agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 57115074
Query: 369 agg 371
|||
Sbjct: 57115073 agg 57115071
Score = 93.7 bits (47), Expect = 4e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 532 agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 578
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57114050 agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 57114004
>gb|GL896282.2| Sus scrofa unplaced genomic scaffold ChrUScaf4166
Length = 53024
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 369 aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43295 aggataaagaagccaagtctgggaactcagatgagaaagaagtgaaagagggctctgaac 43236
Query: 429 cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43235 cagaagagcaggaggaccttgaagggaaagatgaggaaggctcagagggtgaagaatcag 43176
Query: 489 agactgactactcatcagcagatgagaacatcctcaccaaagcag 533
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43175 agactgactactcatcagcagatgagaacatcctcaccaaagcag 43131
Score = 325 bits (164), Expect = 5e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1 cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46347 cggaagtcgcggaaatttgagagccagacaacgcgccgggccggcttccggaagtggctg 46288
Query: 61 tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46287 tttcggcaacatgcttgcggagctgggtttaatcgggacgataggcgaagatgacgaggt 46228
Query: 121 gccagtggagccagagacggactccgaagacgaggaggaggagg 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46227 gccagtggagccagagacggactccgaagacgaggaggaggagg 46184
Score = 295 bits (149), Expect = 5e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 768 caggtaaaactgcagcttttgccctgcccgtcttggagcgtctaatctacaaacctcggc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40183 caggtaaaactgcagcttttgccctgcccgtcttggagcgtctaatctacaaacctcggc 40124
Query: 828 aggccccagtgacccgcgttctggtgctggttcccacccgagaactgggcatccaggtgc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40123 aggccccagtgacccgcgttctggtgctggttcccacccgagaactgggcatccaggtgc 40064
Query: 888 attctgtcaccaagcagctggcacagttc 916
|||||||||||||||||||||||||||||
Sbjct: 40063 attctgtcaccaagcagctggcacagttc 40035
Score = 295 bits (149), Expect = 5e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 162 aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45670 aggggcccattgtgctgggtagaaagcagaaagccttgcagaagaatcgcagtgctgatt 45611
Query: 222 tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45610 tcaaccccgactttgttttcactgagaaggaggggatgtatgatggcagctgggccatgg 45551
Query: 282 ctgatgtcatgagccagctcaagaagaag 310
|||||||||||||||||||||||||||||
Sbjct: 45550 ctgatgtcatgagccagctcaagaagaag 45522
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 1332 tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34874 tggcagctctgttgatgagaaccttcaccgaccatgtgatgctgttcacccagaccaaga 34815
Query: 1392 agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34814 agcaggcccaccgcatgcacatcctcctggggctgatgggactgcaggtgggcgagctcc 34755
Query: 1452 atggcaacctgtcacagacacagcgg 1477
||||||||||||||||||||||||||
Sbjct: 34754 atggcaacctgtcacagacacagcgg 34729
Score = 285 bits (144), Expect = 5e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1194 aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36203 aggtgaaagatctggcttccgtctccttgaagaatcccgtccggatatttgtgaacagta 36144
Query: 1254 acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36143 acacggatgtggcccccttcctgcggcaggagttcatccggatccggccaaatcgggaag 36084
Query: 1314 gggaccgggaagccattgtggcag 1337
||||||||||||||||||||||||
Sbjct: 36083 gggaccgggaagccattgtggcag 36060
Score = 266 bits (134), Expect = 4e-68
Identities = 153/160 (95%), Gaps = 7/160 (4%)
Strand = Plus / Minus
Query: 944 ggcggcctggacgtgaagtctcaggaagcagcccttcgggcagcacctga-------cat 996
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 39172 ggcggcctggacgtgaagtctcaggaagcagcccttcgggcagcacctganacctgacat 39113
Query: 997 cctcatcgccaccccgggccggctcattgatcacctccacaactgcccttccttccacct 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39112 cctcatcgccaccccgggccggctcattgatcacctccacaactgcccttccttccacct 39053
Query: 1057 gagcagcatcgaggtgctcatcctggatgaggctgacagg 1096
||||||||||||||||||||||||||||||||||||||||
Sbjct: 39052 gagcagcatcgaggtgctcatcctggatgaggctgacagg 39013
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 663 aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41596 aggccatcacagtcatgggcttcaagcagcccaccccgatccaaaaggcttgcatacctg 41537
Query: 723 tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41536 tgggtctgttgggaaaggacatttgtgcctgtgcagccactgggacaggtaaaa 41483
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 1750 agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31515 agatgtcatcctcaaattccgggacaagattgagaaaatggagaaggacgtgtatgcggt 31456
Query: 1810 tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 1858
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31455 tctgcagttagaggctgaagaaaaagagatgcaaaagtcagaagcccag 31407
Score = 208 bits (105), Expect = 9e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1856 cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31237 cagatcaacacagcgcagcggctcctggagaaagggaaggaggcaccaaaccctgagcct 31178
Query: 1916 gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 1960
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31177 gagaggagctggttccagaccaaagaagagaggaagaaggaaaaa 31133
Score = 202 bits (102), Expect = 5e-49
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 1093 caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccca 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36436 caggatgctggacgagtactttgaggagcagatgaaggagatcatccgaatgtgttccct 36377
Query: 1153 ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 1198
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36376 ccaccgccagaccatgctcttctcagccacaatgacagatgaggtg 36331
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 1573 ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33051 ggtaattaacttcacgatgcccaacaccattaagcattatgtccaccgggtggggcgaac 32992
Query: 1633 agctcgtgctggccgggctgggcgctcagtctctctgg 1670
||||||||||||||||||||||||||||||||||||||
Sbjct: 32991 agctcgtgctggccgggctgggcgctcagtctctctgg 32954
Score = 178 bits (90), Expect = 8e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 576 aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42377 aggaagcaggaggatttttcgaagatgcatctcagtatgatgaaaacctctcattccagg 42318
Query: 636 acatgaacctttcccgccctcttctgaagg 665
||||||||||||||||||||||||||||||
Sbjct: 42317 acatgaacctttcccgccctcttctgaagg 42288
Score = 168 bits (85), Expect = 7e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1491 ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33245 ggcgctttaaggatgaacagatagacatccttgtggccacagatgtagcagcccgtggac 33186
Query: 1551 ttgacattgagggggtcaaaacggt 1575
|||||||||||||||||||||||||
Sbjct: 33185 ttgacattgagggggtcaaaacggt 33161
Score = 125 bits (63), Expect = 1e-25
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 309 agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43620 agagggcagccacaactttagatgagaagattgagaaggttcgaaagaaaaggaaaacag 43561
Query: 369 agg 371
|||
Sbjct: 43560 agg 43558
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 1693 gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 1751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32853 gctgaaggagattgtaaaagctgccaaggcccctgtgaaggcccggatactgccccaag 32795
Score = 93.7 bits (47), Expect = 4e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 532 agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 578
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42541 agatacactcagagtaaaggagcggaagaagaagaagaaaggacagg 42495
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,402,527
Number of extensions: 797
Number of successful extensions: 797
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 32
Length of query: 1988
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1966
Effective length of database: 2,808,408,574
Effective search space: 5521331256484
Effective search space used: 5521331256484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)