Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008345
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697511.1| PREDICTED: histone cluster 1, H1b-like [Bos ... 106 3e-23
Alignment gi|XP_605694.2| PREDICTED: histone cluster 1, H1b-like [Bos tau... 106 3e-23
Alignment gi|NP_001076894.1| histone H1.1 [Bos taurus]. 105 5e-23
Alignment gi|NP_001094536.1| histone cluster 1, H1d [Bos taurus]. 105 5e-23
Alignment gi|XP_002697564.1| PREDICTED: histone cluster 1, H1e-like [Bos ... 105 5e-23
Alignment gi|XP_875272.2| PREDICTED: histone cluster 1, H1e-like [Bos tau... 105 5e-23
Alignment gi|NP_001092459.1| histone cluster 1, H1e [Bos taurus]. 104 1e-22
Alignment gi|XP_001253576.1| PREDICTED: histone cluster 1, H1e-like [Bos ... 104 1e-22
Alignment gi|XP_002697576.1| PREDICTED: histone cluster 1, H1a-like [Bos ... 99 8e-21
Alignment gi|XP_001252378.1| PREDICTED: histone cluster 1, H1a-like [Bos ... 99 8e-21
>ref|XP_002697511.1| PREDICTED: histone cluster 1, H1b-like [Bos taurus].
Length = 226
Score = 106 bits (265), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKERNG+S GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 43 VSELITKAVAASKERNGLSLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|XP_605694.2| PREDICTED: histone cluster 1, H1b-like [Bos taurus].
Length = 226
Score = 106 bits (265), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKERNG+S GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 43 VSELITKAVAASKERNGLSLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|NP_001076894.1| histone H1.1 [Bos taurus].
Length = 213
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_001094536.1| histone cluster 1, H1d [Bos taurus].
Length = 221
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 41 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 100
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 101 GASGSFKLN 109
>ref|XP_002697564.1| PREDICTED: histone cluster 1, H1e-like [Bos taurus].
Length = 219
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|XP_875272.2| PREDICTED: histone cluster 1, H1e-like [Bos taurus].
Length = 219
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_001092459.1| histone cluster 1, H1e [Bos taurus].
Length = 210
Score = 104 bits (260), Expect = 1e-22
Identities = 56/69 (81%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VS+LITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSDLITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|XP_001253576.1| PREDICTED: histone cluster 1, H1e-like [Bos taurus].
Length = 210
Score = 104 bits (260), Expect = 1e-22
Identities = 56/69 (81%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VS+LITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSDLITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|XP_002697576.1| PREDICTED: histone cluster 1, H1a-like [Bos taurus].
Length = 218
Score = 98.6 bits (244), Expect = 8e-21
Identities = 52/69 (75%), Positives = 56/69 (81%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELI +AV++SKER+GVS GYDVEKNNSRIKLGLKSLV KGTLVQTKGT
Sbjct: 43 VSELIVQAVSSSKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVGKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|XP_001252378.1| PREDICTED: histone cluster 1, H1a-like [Bos taurus].
Length = 218
Score = 98.6 bits (244), Expect = 8e-21
Identities = 52/69 (75%), Positives = 56/69 (81%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELI +AV++SKER+GVS GYDVEKNNSRIKLGLKSLV KGTLVQTKGT
Sbjct: 43 VSELIVQAVSSSKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVGKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,232,664
Number of extensions: 512863
Number of successful extensions: 1824
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1822
Number of HSP's successfully gapped: 14
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008345
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545427.2| PREDICTED: similar to Histone H1.5 (Histone H1a... 106 3e-23
Alignment gi|XP_545395.1| PREDICTED: similar to Histone H1.5 (Histone H1a... 106 3e-23
Alignment gi|XP_545391.1| PREDICTED: similar to Histone H1.4 (Histone H1b... 105 5e-23
Alignment gi|XP_853847.1| PREDICTED: similar to Histone H1.4 (Histone H1b... 105 5e-23
Alignment gi|XP_545386.2| PREDICTED: similar to Histone H1.2 (H1d) [Canis... 105 5e-23
Alignment gi|XP_545380.1| PREDICTED: similar to Histone H1.2 (H1d) [Canis... 100 3e-21
Alignment gi|XP_545388.1| PREDICTED: similar to H1 histone family, member... 89 5e-18
Alignment gi|XP_852794.1| PREDICTED: similar to Histone H1.0 (H1(0)) (His... 49 6e-06
>ref|XP_545427.2| PREDICTED: similar to Histone H1.5 (Histone H1a) [Canis
familiaris].
Length = 211
Score = 106 bits (265), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKERNG+S GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 43 VSELITKAVAASKERNGLSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|XP_545395.1| PREDICTED: similar to Histone H1.5 (Histone H1a) [Canis
familiaris].
Length = 218
Score = 106 bits (265), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKERNG+S GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 41 VSELITKAVAASKERNGLSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 100
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 101 GASGSFKLN 109
>ref|XP_545391.1| PREDICTED: similar to Histone H1.4 (Histone H1b) [Canis
familiaris].
Length = 219
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|XP_853847.1| PREDICTED: similar to Histone H1.4 (Histone H1b) [Canis
familiaris].
Length = 290
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 95 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 154
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 155 GASGSFKLN 163
>ref|XP_545386.2| PREDICTED: similar to Histone H1.2 (H1d) [Canis familiaris].
Length = 213
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|XP_545380.1| PREDICTED: similar to Histone H1.2 (H1d) [Canis familiaris].
Length = 215
Score = 100 bits (248), Expect = 3e-21
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELI +AV++SKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 43 VSELIVQAVSSSKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|XP_545388.1| PREDICTED: similar to H1 histone family, member T, testis-specific
[Canis familiaris].
Length = 212
Score = 89.4 bits (220), Expect = 5e-18
Identities = 48/69 (69%), Positives = 54/69 (78%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VS+LI +A++ S+ER G+S GYDVEKNNSRIKL LKSLVSKGTLVQTKGT
Sbjct: 44 VSKLIMEALSVSQERAGMSLAALKKALAAAGYDVEKNNSRIKLCLKSLVSKGTLVQTKGT 103
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 104 GASGSFKLN 112
>ref|XP_852794.1| PREDICTED: similar to Histone H1.0 (H1(0)) (Histone H1) [Canis
familiaris].
Length = 194
Score = 49.3 bits (116), Expect = 6e-06
Identities = 29/67 (43%), Positives = 37/67 (55%)
Frame = +1
Query: 181 SELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTG 360
S++I A+ A K R G S E +S+IKL +K LV+ G L QTKG G
Sbjct: 29 SDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVG 88
Query: 361 ASGSFKL 381
ASGSF+L
Sbjct: 89 ASGSFRL 95
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,361,753
Number of extensions: 532213
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1928
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008345
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026962.1| histone H1.3-like protein [Sus scrofa]. 107 8e-24
Alignment gi|XP_003356603.1| PREDICTED: histone H1.2-like [Sus scrofa]. 105 3e-23
Alignment gi|NP_001020387.1| histone H1.2-like protein [Sus scrofa]. 105 3e-23
Alignment gi|XP_001926194.1| PREDICTED: histone H1.1-like [Sus scrofa]. 100 2e-21
Alignment gi|XP_001926870.1| PREDICTED: histone H1t-like [Sus scrofa]. 88 7e-18
Alignment gi|XP_003126085.1| PREDICTED: histone H1.0-like [Sus scrofa]. 49 3e-06
Alignment gi|XP_003132451.1| PREDICTED: histone H1x-like [Sus scrofa]. 49 6e-06
>ref|NP_001026962.1| histone H1.3-like protein [Sus scrofa].
Length = 221
Score = 107 bits (268), Expect = 8e-24
Identities = 58/69 (84%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKERNGVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 41 VSELITKAVAASKERNGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 100
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 101 GASGSFKLN 109
>ref|XP_003356603.1| PREDICTED: histone H1.2-like [Sus scrofa].
Length = 213
Score = 105 bits (263), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_001020387.1| histone H1.2-like protein [Sus scrofa].
Length = 213
Score = 105 bits (263), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|XP_001926194.1| PREDICTED: histone H1.1-like [Sus scrofa].
Length = 218
Score = 100 bits (248), Expect = 2e-21
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELI +AV++SKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 43 VSELIVQAVSSSKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|XP_001926870.1| PREDICTED: histone H1t-like [Sus scrofa].
Length = 212
Score = 88.2 bits (217), Expect = 7e-18
Identities = 46/69 (66%), Positives = 54/69 (78%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VS+LIT+A++ S+ER G+S GYDVEKNNSRIKLGLKSLV KG LVQT+GT
Sbjct: 44 VSKLITEALSVSQERAGMSLAALKKALAAAGYDVEKNNSRIKLGLKSLVGKGILVQTRGT 103
Query: 358 GASGSFKLN 384
GASGSFKL+
Sbjct: 104 GASGSFKLS 112
>ref|XP_003126085.1| PREDICTED: histone H1.0-like [Sus scrofa].
Length = 194
Score = 49.3 bits (116), Expect = 3e-06
Identities = 29/67 (43%), Positives = 37/67 (55%)
Frame = +1
Query: 181 SELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTG 360
S++I A+ A K R G S E +S+IKL +K LV+ G L QTKG G
Sbjct: 29 SDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVG 88
Query: 361 ASGSFKL 381
ASGSF+L
Sbjct: 89 ASGSFRL 95
>ref|XP_003132451.1| PREDICTED: histone H1x-like [Sus scrofa].
Length = 214
Score = 48.5 bits (114), Expect = 6e-06
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 181 SELITKAVAASKERNGVSXXXXXXXXXXXG-YDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
S+L+ + + ERNG S +D + + +K +K+LV TL+Q KGT
Sbjct: 49 SQLVVETIRRLGERNGSSLAKIYAEAKKVAWFDQQNGRTYLKYSIKALVQNDTLLQVKGT 108
Query: 358 GASGSFKLN 384
GA+GSFKLN
Sbjct: 109 GANGSFKLN 117
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,635,581
Number of extensions: 329804
Number of successful extensions: 1214
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1213
Number of HSP's successfully gapped: 7
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008345
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056602.1| histone H1.4 [Mus musculus]. 105 4e-23
Alignment gi|NP_663759.3| histone H1.3 [Mus musculus]. 105 4e-23
Alignment gi|NP_064418.1| histone H1.5 [Mus musculus]. 104 1e-22
Alignment gi|NP_056601.1| histone H1.2 [Mus musculus]. 103 2e-22
Alignment gi|NP_085112.1| histone H1.1 [Mus musculus]. 98 1e-20
Alignment gi|NP_034507.2| histone H1t [Mus musculus]. 84 2e-16
Alignment gi|NP_032223.2| histone H1.0 [Mus musculus]. 49 5e-06
>ref|NP_056602.1| histone H1.4 [Mus musculus].
Length = 219
Score = 105 bits (263), Expect = 4e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_663759.3| histone H1.3 [Mus musculus].
Length = 221
Score = 105 bits (263), Expect = 4e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 41 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 100
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 101 GASGSFKLN 109
>ref|NP_064418.1| histone H1.5 [Mus musculus].
Length = 223
Score = 104 bits (259), Expect = 1e-22
Identities = 56/69 (81%), Positives = 57/69 (82%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAV+ASKER GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVSASKERGGVSLPALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_056601.1| histone H1.2 [Mus musculus].
Length = 212
Score = 103 bits (257), Expect = 2e-22
Identities = 56/69 (81%), Positives = 57/69 (82%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKG LVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGILVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_085112.1| histone H1.1 [Mus musculus].
Length = 213
Score = 97.8 bits (242), Expect = 1e-20
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELI +AV++SKER+GVS GYDVEKNNSRIKLGLKSLV+KGTLVQTKGT
Sbjct: 42 VSELIVQAVSSSKERSGVSLAALKKSLAAAGYDVEKNNSRIKLGLKSLVNKGTLVQTKGT 101
Query: 358 GASGSFKLN 384
GA+GSFKLN
Sbjct: 102 GAAGSFKLN 110
>ref|NP_034507.2| histone H1t [Mus musculus].
Length = 209
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/69 (63%), Positives = 52/69 (75%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VS+LI +A++ S+ER G+S GYDVEKNNSRIKL LK LV+KG LVQTKGT
Sbjct: 43 VSKLIPEALSTSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKL+
Sbjct: 103 GASGSFKLS 111
>ref|NP_032223.2| histone H1.0 [Mus musculus].
Length = 194
Score = 49.3 bits (116), Expect = 5e-06
Identities = 29/67 (43%), Positives = 37/67 (55%)
Frame = +1
Query: 181 SELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTG 360
S++I A+ A K R G S E +S+IKL +K LV+ G L QTKG G
Sbjct: 29 SDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVG 88
Query: 361 ASGSFKL 381
ASGSF+L
Sbjct: 89 ASGSFRL 95
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,961,692
Number of extensions: 434755
Number of successful extensions: 1499
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 7
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008345
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005313.1| histone H1.5 [Homo sapiens]. 106 3e-23
Alignment gi|NP_005312.1| histone H1.4 [Homo sapiens]. 105 5e-23
Alignment gi|NP_005311.1| histone H1.3 [Homo sapiens]. 105 5e-23
Alignment gi|NP_005310.1| histone H1.2 [Homo sapiens]. 105 5e-23
Alignment gi|NP_005316.1| histone H1.1 [Homo sapiens]. 97 2e-20
Alignment gi|NP_005314.2| histone H1t [Homo sapiens]. 86 5e-17
Alignment gi|NP_005309.1| histone H1.0 [Homo sapiens]. 49 6e-06
>ref|NP_005313.1| histone H1.5 [Homo sapiens].
Length = 226
Score = 106 bits (265), Expect = 3e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKERNG+S GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 43 VSELITKAVAASKERNGLSLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|NP_005312.1| histone H1.4 [Homo sapiens].
Length = 219
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_005311.1| histone H1.3 [Homo sapiens].
Length = 221
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 41 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 100
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 101 GASGSFKLN 109
>ref|NP_005310.1| histone H1.2 [Homo sapiens].
Length = 213
Score = 105 bits (263), Expect = 5e-23
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELITKAVAASKER+GVS GYDVEKNNSRIKLGLKSLVSKGTLVQTKGT
Sbjct: 40 VSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 99
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 100 GASGSFKLN 108
>ref|NP_005316.1| histone H1.1 [Homo sapiens].
Length = 215
Score = 97.4 bits (241), Expect = 2e-20
Identities = 51/69 (73%), Positives = 55/69 (79%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VSELI +A ++SKER GVS GYDVEKNNSRIKLG+KSLVSKGTLVQTKGT
Sbjct: 43 VSELIVQAASSSKERGGVSLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGT 102
Query: 358 GASGSFKLN 384
GASGSFKLN
Sbjct: 103 GASGSFKLN 111
>ref|NP_005314.2| histone H1t [Homo sapiens].
Length = 207
Score = 85.9 bits (211), Expect = 5e-17
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = +1
Query: 178 VSELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGT 357
VS+LIT+A++ S+ER G+S GYDVEKNNSRIKL LKSLV+KG LVQT+GT
Sbjct: 44 VSKLITEALSVSQERVGMSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGT 103
Query: 358 GASGSFKLN 384
GASGSFKL+
Sbjct: 104 GASGSFKLS 112
>ref|NP_005309.1| histone H1.0 [Homo sapiens].
Length = 194
Score = 49.3 bits (116), Expect = 6e-06
Identities = 29/67 (43%), Positives = 37/67 (55%)
Frame = +1
Query: 181 SELITKAVAASKERNGVSXXXXXXXXXXXGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTG 360
S++I A+ A K R G S E +S+IKL +K LV+ G L QTKG G
Sbjct: 29 SDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVG 88
Query: 361 ASGSFKL 381
ASGSF+L
Sbjct: 89 ASGSFRL 95
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,803,445
Number of extensions: 520621
Number of successful extensions: 1813
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1810
Number of HSP's successfully gapped: 7
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008345
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1207 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1207 bits (609), Expect = 0.0
Identities = 618/621 (99%)
Strand = Plus / Plus
Query: 1 gacacgccattctgatagtttaagcgtactttttgcttttcctggatagtcagaaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072604 gacacgccattctgatagtttaagcgtactttttgcttttcctggatagtcagaaagatg 22072663
Query: 61 tcggagaccgctccagtggctcctgctgctcccgcgcctgcagagaaaacacctgtaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072664 tcggagaccgctccagtggctcctgctgctcccgcgcctgcagagaaaacacctgtaaag 22072723
Query: 121 aaaaaggcgaagaagacgggcgcagctgctgggaaacgcaaagcgtccgggcctccggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072724 aaaaaggcgaagaagacgggcgcagctgctgggaaacgcaaagcgtccgggcctccggtg 22072783
Query: 181 tccgagctcatcaccaaggctgtcgccgcctccaaggagcgcaacggcgtgtctctggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072784 tccgagctcatcaccaaggctgtcgccgcctccaaggagcgcaacggcgtgtctctggcc 22072843
Query: 241 gcgctcaagaaggcgctggctgccgccggctacgatgtggaaaagaacaacagccgaatc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 22072844 gcgctcaagaaggcgctggctgccgccggctacgatgtggaaaagaacaacagccggatc 22072903
Query: 301 aagctggggcttaaaagcttggtgagcaagggcaccctggtgcagactaaaggcactggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072904 aagctggggcttaaaagcttggtgagcaagggcaccctggtgcagactaaaggcactggc 22072963
Query: 361 gcttcgggctccttcaaactcaacaagaaggcggccaccggggaagccaagcccaaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072964 gcttcgggctccttcaaactcaacaagaaggcggccaccggggaagccaagcccaaagct 22073023
Query: 421 aagaaagcgggagcagctaagcctaagaagtctgctggggcagccaagaagcccaagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22073024 aagaaagcgggagcagctaagcctaagaagtctgctggggcagccaagaagcccaagaag 22073083
Query: 481 gctaccggagcagccaccccaaagaagaccgccaagaagacccccaagaaagccaagaag 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22073084 gctaccggaacagccaccccaaagaagaccgccaagaagacccccaagaaagccaagaag 22073143
Query: 541 ccggcagcggcagctggcaccaagaaggtggccaagagcccgaagaaggcgaaggcagcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22073144 ccggcagcggcagctggcaccaagaaggtggccaagagcccgaagaaggcgaaggcagcc 22073203
Query: 601 aagccgaaaaaggctgctaag 621
|||||||||||||| ||||||
Sbjct: 22073204 aagccgaaaaaggccgctaag 22073224
Score = 470 bits (237), Expect = e-130
Identities = 247/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 687 tacaaaggccaagaaagccgtctccaagaagaagtaaaattgtggcgggacctcctgctt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22073290 tacaaaggccaagaaagccgtctccaagaagaagtaaaattgtggcgggacctcctgctt 22073349
Query: 747 tgcaaacctaaaggctcttttcagagccacccactgctttcaggtaaaagggctggacct 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22073350 tgcaaacctaaaggctcttttcagagccacccactgctttcaggtaaaagggctggacct 22073409
Query: 807 aatgtttttcggtgaattcttttttaaacttgccgcttttatgtgattggctgagactta 866
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 22073410 aatgtttttcggtgaattcttttttaaacttgccgctttcatgtgattggctgagactta 22073469
Query: 867 atgcgccagggggcgcgcgcggaacttttgagcgctaaatggctcggaaaagagcct-aa 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 22073470 atgcgccagggggcgcgcgcggaacttttgagcgctaaatggctcggaaaagagcctaaa 22073529
Query: 926 gatactcag 934
|||||||||
Sbjct: 22073530 gatactcag 22073538
Score = 347 bits (175), Expect = 7e-93
Identities = 353/411 (85%), Gaps = 1/411 (0%)
Strand = Plus / Minus
Query: 142 gcagctgctgggaaacgcaaagcgtccgggcctccggtgtccgagctcatcaccaaggct 201
|||| ||||| ||| ||||| ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 22054357 gcaggtgctgcgaagcgcaaggcgtctggacctcccgtgtccgagctcatcactaaggct 22054298
Query: 202 gtcgccgcctccaaggagcgcaacggcgtgtctctggccgcgctcaagaagg-cgctggc 260
|||||||||||||||||||||| ||||||||| |||| |||||||| |||| |||||||
Sbjct: 22054297 gtcgccgcctccaaggagcgcagcggcgtgtccttggctgcgctcaaaaagggcgctggc 22054238
Query: 261 tgccgccggctacgatgtggaaaagaacaacagccgaatcaagctggggcttaaaagctt 320
||||| |||||||||||||| |||||||||||||| |||||| |||| || || || ||
Sbjct: 22054237 ggccgctggctacgatgtggagaagaacaacagccgtatcaagttgggtctgaagagttt 22054178
Query: 321 ggtgagcaagggcaccctggtgcagactaaaggcactggcgcttcgggctccttcaaact 380
|||||||||||||||||||||||| || || ||||||||||| || ||||| ||||| ||
Sbjct: 22054177 ggtgagcaagggcaccctggtgcaaaccaagggcactggcgcctccggctctttcaagct 22054118
Query: 381 caacaagaaggcggccaccggggaagccaagcccaaagctaagaaagcgggagcagctaa 440
||||||||||||||||||||||||||| || |||||||| |||||| |||| || |||||
Sbjct: 22054117 caacaagaaggcggccaccggggaagcgaaacccaaagccaagaaaacgggcgcggctaa 22054058
Query: 441 gcctaagaagtctgctggggcagccaagaagcccaagaaggctaccggagcagccacccc 500
||| || ||| | || || || || ||||||||||||||||| || || | ||||||||
Sbjct: 22054057 gcccaaaaagcccgcgggagcggctaagaagcccaagaaggcgacggggacggccacccc 22053998
Query: 501 aaagaagaccgccaagaagacccccaagaaagccaagaagccggcagcggc 551
||||||| |||||| ||||| || ||||| || |||||||| || |||||
Sbjct: 22053997 gaagaagagcgccaaaaagactccaaagaaggcgaagaagcctgccgcggc 22053947
Score = 230 bits (116), Expect = 1e-57
Identities = 233/272 (85%)
Strand = Plus / Minus
Query: 184 gagctcatcaccaaggctgtcgccgcctccaaggagcgcaacggcgtgtctctggccgcg 243
||||| ||||| ||||| || ||||||||||| |||||||| ||| | ||| |||| |||
Sbjct: 23176856 gagctgatcactaaggccgtggccgcctccaaagagcgcaatggcctctctttggctgcg 23176797
Query: 244 ctcaagaaggcgctggctgccgccggctacgatgtggaaaagaacaacagccgaatcaag 303
||||||||||||||||| || | |||||||||||||| |||||||||||||| ||||||
Sbjct: 23176796 ctcaagaaggcgctggcagcgggaggctacgatgtggagaagaacaacagccgcatcaag 23176737
Query: 304 ctggggcttaaaagcttggtgagcaagggcaccctggtgcagactaaaggcactggcgct 363
||||| || || ||| |||||||||||||||||||||||||||| || ||||| || |||
Sbjct: 23176736 ctgggtctcaagagcctggtgagcaagggcaccctggtgcagaccaagggcaccggtgct 23176677
Query: 364 tcgggctccttcaaactcaacaagaaggcggccaccggggaagccaagcccaaagctaag 423
|| |||||||| || ||||| |||||||| ||||| |||||||||||||||||| | |||
Sbjct: 23176676 tctggctcctttaagctcaataagaaggcagccactggggaagccaagcccaaaacgaag 23176617
Query: 424 aaagcgggagcagctaagcctaagaagtctgc 455
|| || || || |||||| | |||||| ||||
Sbjct: 23176616 aaggctggggccgctaaggcaaagaagcctgc 23176585
Score = 61.9 bits (31), Expect = 6e-07
Identities = 63/73 (86%), Gaps = 3/73 (4%)
Strand = Plus / Minus
Query: 547 gcggcagctggcaccaagaaggtggccaagagcccgaagaaggcgaaggcag---ccaag 603
||||| |||||| ||| ||||||||||||||||| |||||||||||||| | || ||
Sbjct: 23175980 gcggctgctggcgtcaaaaaggtggccaagagccctaagaaggcgaaggccgcctcctag 23175921
Query: 604 ccgaaaaaggctg 616
|||||||||||||
Sbjct: 23175920 ccgaaaaaggctg 23175908
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,185,467
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 5
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)