Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008347
(948 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029544.1| abhydrolase domain-containing protein 11 [Bo... 401 e-112
>ref|NP_001029544.1| abhydrolase domain-containing protein 11 [Bos taurus].
Length = 303
Score = 401 bits (1030), Expect = e-112
Identities = 211/303 (69%), Positives = 233/303 (76%), Gaps = 28/303 (9%)
Frame = +1
Query: 64 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPRPVPLSYKLLDGEVARPPLVFL 243
MLR RAW P+RGIG S+ SFSR+P+A SSSQGGTEPRPV LSYKLLDGE A P LVFL
Sbjct: 1 MLRWTRAWTAPYRGIGLSNSSFSRLPIAPSSSQGGTEPRPVRLSYKLLDGEAASPALVFL 60
Query: 244 HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXXXXXX 423
HGLFGSK NF+ +AK LAQQTGRRVLTVDARNHG+S HSPDMSYEAMS
Sbjct: 61 HGLFGSKTNFNFVAKTLAQQTGRRVLTVDARNHGESSHSPDMSYEAMSKDLQDLLPHLGL 120
Query: 424 VPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAIDLPNG 603
VPCVLIGHSMGG+TAMLLALQRPELVERLI VDIS VE+TSSSNFPNY+AAM+A+D+ N
Sbjct: 121 VPCVLIGHSMGGRTAMLLALQRPELVERLIAVDISQVETTSSSNFPNYIAAMRAVDMANE 180
Query: 604 ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR 783
ASLS ARKLA E+L SVIQS S+RQ LLTNLVEVDG FVWR+NLDAL+QH DKIL+FP R
Sbjct: 181 ASLSGARKLADERLRSVIQSASIRQLLLTNLVEVDGRFVWRLNLDALAQHLDKILDFPAR 240
Query: 784 QESYSGPALFLIGGNSQFVL----------------------------DSPQDFMAAIRS 879
QE+YSGP LFL GGNSQF+L D PQDFMAA++S
Sbjct: 241 QETYSGPTLFLRGGNSQFLLPSHYPEIRRLFPRAQMQTVPNAGHWVHSDRPQDFMAAVQS 300
Query: 880 FLA 888
FLA
Sbjct: 301 FLA 303
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,434,272
Number of extensions: 1128517
Number of successful extensions: 4459
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4449
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008347
(948 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546921.1| PREDICTED: similar to abhydrolase domain contai... 394 e-110
Alignment gi|XP_857286.1| PREDICTED: similar to abhydrolase domain contai... 379 e-105
>ref|XP_546921.1| PREDICTED: similar to abhydrolase domain containing 11 isoform 1
isoform 1 [Canis familiaris].
Length = 304
Score = 394 bits (1011), Expect = e-110
Identities = 212/304 (69%), Positives = 234/304 (76%), Gaps = 29/304 (9%)
Frame = +1
Query: 64 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSS-QGGTEPRPVPLSYKLLDGEVARPPLVF 240
MLR ARAWRLP R +GP + SFS VPVA SSS + G EPR V LSYKLLDGE ARP LVF
Sbjct: 1 MLRWARAWRLPVRALGPCNLSFSGVPVAHSSSGRSGAEPRSVLLSYKLLDGEAARPALVF 60
Query: 241 LHGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXXXXX 420
LHGLFGSK NF+SIAKALAQQTGRRVLTVDARNHGDSPHSP+MSYEAMS
Sbjct: 61 LHGLFGSKTNFNSIAKALAQQTGRRVLTVDARNHGDSPHSPEMSYEAMSQDLQDLLPQLG 120
Query: 421 XVPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAIDLPN 600
VPCVLIGHSMGGKTAMLLALQRPELVERLI VDISPVE+TSSS+FP+Y+AAM+A+D+P+
Sbjct: 121 LVPCVLIGHSMGGKTAMLLALQRPELVERLIAVDISPVETTSSSDFPSYMAAMRAVDIPD 180
Query: 601 GASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPP 780
S SSARKLA E+LS+VIQ ++ RQFLLTNLVEVDG FVWRVNL+AL+QH DKIL FPP
Sbjct: 181 EVSRSSARKLADEQLSTVIQDMAERQFLLTNLVEVDGRFVWRVNLEALAQHVDKILAFPP 240
Query: 781 RQESYSGPALFLIGGNSQFV----------------------------LDSPQDFMAAIR 876
RQESY GP LFL+GGNSQ+V D PQDF+AAIR
Sbjct: 241 RQESYLGPTLFLLGGNSQYVHPSHHAEIRRLFPQAQMQTVPNAGHWIHADCPQDFVAAIR 300
Query: 877 SFLA 888
FLA
Sbjct: 301 GFLA 304
>ref|XP_857286.1| PREDICTED: similar to abhydrolase domain containing 11 isoform 2
isoform 3 [Canis familiaris].
Length = 298
Score = 379 bits (974), Expect = e-105
Identities = 207/304 (68%), Positives = 229/304 (75%), Gaps = 29/304 (9%)
Frame = +1
Query: 64 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSS-QGGTEPRPVPLSYKLLDGEVARPPLVF 240
MLR ARAWRLP R +GP + SFS VPVA SSS + G EPR LLDGE ARP LVF
Sbjct: 1 MLRWARAWRLPVRALGPCNLSFSGVPVAHSSSGRSGAEPR------SLLDGEAARPALVF 54
Query: 241 LHGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXXXXX 420
LHGLFGSK NF+SIAKALAQQTGRRVLTVDARNHGDSPHSP+MSYEAMS
Sbjct: 55 LHGLFGSKTNFNSIAKALAQQTGRRVLTVDARNHGDSPHSPEMSYEAMSQDLQDLLPQLG 114
Query: 421 XVPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAIDLPN 600
VPCVLIGHSMGGKTAMLLALQRPELVERLI VDISPVE+TSSS+FP+Y+AAM+A+D+P+
Sbjct: 115 LVPCVLIGHSMGGKTAMLLALQRPELVERLIAVDISPVETTSSSDFPSYMAAMRAVDIPD 174
Query: 601 GASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPP 780
S SSARKLA E+LS+VIQ ++ RQFLLTNLVEVDG FVWRVNL+AL+QH DKIL FPP
Sbjct: 175 EVSRSSARKLADEQLSTVIQDMAERQFLLTNLVEVDGRFVWRVNLEALAQHVDKILAFPP 234
Query: 781 RQESYSGPALFLIGGNSQFV----------------------------LDSPQDFMAAIR 876
RQESY GP LFL+GGNSQ+V D PQDF+AAIR
Sbjct: 235 RQESYLGPTLFLLGGNSQYVHPSHHAEIRRLFPQAQMQTVPNAGHWIHADCPQDFVAAIR 294
Query: 877 SFLA 888
FLA
Sbjct: 295 GFLA 298
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,107,964
Number of extensions: 1163135
Number of successful extensions: 4835
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4824
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008347
(948 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124459.1| PREDICTED: abhydrolase domain-containing pro... 498 e-141
Alignment gi|XP_003124460.1| PREDICTED: abhydrolase domain-containing pro... 477 e-135
>ref|XP_003124459.1| PREDICTED: abhydrolase domain-containing protein 11-like isoform 1
[Sus scrofa].
Length = 303
Score = 498 bits (1283), Expect = e-141
Identities = 262/303 (86%), Positives = 262/303 (86%), Gaps = 28/303 (9%)
Frame = +1
Query: 64 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPRPVPLSYKLLDGEVARPPLVFL 243
MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPRPVPLSYKLLDGEVARPPLVFL
Sbjct: 1 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPRPVPLSYKLLDGEVARPPLVFL 60
Query: 244 HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXXXXXX 423
HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMS
Sbjct: 61 HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSQDLQDLLPQLGL 120
Query: 424 VPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAIDLPNG 603
VPCVLIGHSMGGKTAMLLALQRPELVERLI VDISPVESTSSSNFPNYVAAMKAIDLPNG
Sbjct: 121 VPCVLIGHSMGGKTAMLLALQRPELVERLIAVDISPVESTSSSNFPNYVAAMKAIDLPNG 180
Query: 604 ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR 783
ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR
Sbjct: 181 ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR 240
Query: 784 QESYSGPALFLIGGNSQFVL----------------------------DSPQDFMAAIRS 879
QESYSGPALFLIGGNSQFVL DSPQDFMAAIRS
Sbjct: 241 QESYSGPALFLIGGNSQFVLPSHHPEIRRLFPRAQMQTLPNAGHLVHSDSPQDFMAAIRS 300
Query: 880 FLA 888
FLA
Sbjct: 301 FLA 303
>ref|XP_003124460.1| PREDICTED: abhydrolase domain-containing protein 11-like isoform 2
[Sus scrofa].
Length = 297
Score = 477 bits (1228), Expect = e-135
Identities = 255/303 (84%), Positives = 255/303 (84%), Gaps = 28/303 (9%)
Frame = +1
Query: 64 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPRPVPLSYKLLDGEVARPPLVFL 243
MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPR LLDGEVARPPLVFL
Sbjct: 1 MLRCARAWRLPHRGIGPSSPSFSRVPVALSSSQGGTEPR------SLLDGEVARPPLVFL 54
Query: 244 HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXXXXXX 423
HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMS
Sbjct: 55 HGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSQDLQDLLPQLGL 114
Query: 424 VPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAIDLPNG 603
VPCVLIGHSMGGKTAMLLALQRPELVERLI VDISPVESTSSSNFPNYVAAMKAIDLPNG
Sbjct: 115 VPCVLIGHSMGGKTAMLLALQRPELVERLIAVDISPVESTSSSNFPNYVAAMKAIDLPNG 174
Query: 604 ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR 783
ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR
Sbjct: 175 ASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPR 234
Query: 784 QESYSGPALFLIGGNSQFVL----------------------------DSPQDFMAAIRS 879
QESYSGPALFLIGGNSQFVL DSPQDFMAAIRS
Sbjct: 235 QESYSGPALFLIGGNSQFVLPSHHPEIRRLFPRAQMQTLPNAGHLVHSDSPQDFMAAIRS 294
Query: 880 FLA 888
FLA
Sbjct: 295 FLA 297
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,509,141
Number of extensions: 729827
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2963
Number of HSP's successfully gapped: 4
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008347
(948 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660250.1| abhydrolase domain-containing protein 11 isofor... 332 3e-91
Alignment gi|NP_001177366.1| abhydrolase domain-containing protein 11 iso... 248 5e-66
>ref|NP_660250.1| abhydrolase domain-containing protein 11 isoform 1 [Mus musculus].
Length = 307
Score = 332 bits (850), Expect = 3e-91
Identities = 175/307 (57%), Positives = 209/307 (68%), Gaps = 32/307 (10%)
Frame = +1
Query: 64 MLRCARAWRLPHRGIGPSSPSFSRVPVAL----SSSQGGTEPRPVPLSYKLLDGEVARPP 231
MLR ARAWR+P +G SSP VPV SS Q + RP+PLSY LLDG+ P
Sbjct: 1 MLRWARAWRVPRGVLGASSPRRLAVPVTFCSSRSSGQENADLRPLPLSYNLLDGDATLPA 60
Query: 232 LVFLHGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXX 411
+VFLHGLFGSK NF+S+AKA+ Q+TGRRVLTVDARNHGDSPHSPD SYEAMS
Sbjct: 61 IVFLHGLFGSKTNFNSLAKAMVQRTGRRVLTVDARNHGDSPHSPDASYEAMSQDLQGLLP 120
Query: 412 XXXXVPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAID 591
VPCVL+GHSMGGKTAMLLALQRP++VERL+VVDISPV +T S+ ++AAMKA++
Sbjct: 121 QLGLVPCVLVGHSMGGKTAMLLALQRPDVVERLVVVDISPVGTTPGSHIGAFIAAMKAVE 180
Query: 592 LPNGASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILN 771
+P S ARKLA ++LSSV++ +RQFLLTNLVEV G F WR+NLD L+QH DKI+
Sbjct: 181 IPEKVPHSQARKLADKQLSSVVKEAGIRQFLLTNLVEVGGRFSWRLNLDTLAQHLDKIMT 240
Query: 772 FPPRQESYSGPALFLIGGNSQFV----------------------------LDSPQDFMA 867
FP ++E YSGP LFL+GGNS +V D PQDFM
Sbjct: 241 FPQQREPYSGPTLFLLGGNSTYVQPSHHSEIRRLFPQAQIQTVPNAGHWVHSDKPQDFMD 300
Query: 868 AIRSFLA 888
A+ SFLA
Sbjct: 301 AVTSFLA 307
>ref|NP_001177366.1| abhydrolase domain-containing protein 11 isoform 2 [Mus musculus].
Length = 227
Score = 248 bits (633), Expect = 5e-66
Identities = 129/227 (56%), Positives = 155/227 (68%), Gaps = 28/227 (12%)
Frame = +1
Query: 292 LAQQTGRRVLTVDARNHGDSPHSPDMSYEAMSXXXXXXXXXXXXVPCVLIGHSMGGKTAM 471
+ Q+TGRRVLTVDARNHGDSPHSPD SYEAMS VPCVL+GHSMGGKTAM
Sbjct: 1 MVQRTGRRVLTVDARNHGDSPHSPDASYEAMSQDLQGLLPQLGLVPCVLVGHSMGGKTAM 60
Query: 472 LLALQRPELVERLIVVDISPVESTSSSNFPNYVAAMKAIDLPNGASLSSARKLASEKLSS 651
LLALQRP++VERL+VVDISPV +T S+ ++AAMKA+++P S ARKLA ++LSS
Sbjct: 61 LLALQRPDVVERLVVVDISPVGTTPGSHIGAFIAAMKAVEIPEKVPHSQARKLADKQLSS 120
Query: 652 VIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPRQESYSGPALFLIGGNS 831
V++ +RQFLLTNLVEV G F WR+NLD L+QH DKI+ FP ++E YSGP LFL+GGNS
Sbjct: 121 VVKEAGIRQFLLTNLVEVGGRFSWRLNLDTLAQHLDKIMTFPQQREPYSGPTLFLLGGNS 180
Query: 832 QFV----------------------------LDSPQDFMAAIRSFLA 888
+V D PQDFM A+ SFLA
Sbjct: 181 TYVQPSHHSEIRRLFPQAQIQTVPNAGHWVHSDKPQDFMDAVTSFLA 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,001,258
Number of extensions: 946830
Number of successful extensions: 3948
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008347
(948 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_683710.1| abhydrolase domain-containing protein 11 isofor... 385 e-107
Alignment gi|NP_683711.1| abhydrolase domain-containing protein 11 isofor... 366 e-101
Alignment gi|NP_001138836.1| abhydrolase domain-containing protein 11 iso... 218 5e-57
>ref|NP_683710.1| abhydrolase domain-containing protein 11 isoform 1 [Homo sapiens].
Length = 315
Score = 385 bits (990), Expect = e-107
Identities = 207/314 (65%), Positives = 229/314 (72%), Gaps = 31/314 (9%)
Frame = +1
Query: 37 VRARSPIPGMLRCARAWRLPHRGIGPSSPSFSRVPVALSSS---QGGTEPRPVPLSYKLL 207
+RA + MLR RAWRLP G+GP PSF+RVPVA SSS +GG EPRP+PLSY+LL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
Query: 208 DGEVARPPLVFLHGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMS 387
DGE A P +VFLHGLFGSK NF+SIAK LAQQTGRRVLTVDARNHGDSPHSPDMSYE MS
Sbjct: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRVLTVDARNHGDSPHSPDMSYEIMS 120
Query: 388 XXXXXXXXXXXXVPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNY 567
VPCV++GHSMGGKTAMLLALQRPELVERLI VDISPVEST S+F Y
Sbjct: 121 QDLQDLLPQLGLVPCVVVGHSMGGKTAMLLALQRPELVERLIAVDISPVESTGVSHFATY 180
Query: 568 VAAMKAIDLPNGASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALS 747
VAAM+AI++ + S ARKLA E+LSSVIQ ++VRQ LLTNLVEVDG FVWRVNLDAL+
Sbjct: 181 VAAMRAINIADELPRSRARKLADEQLSSVIQDMAVRQHLLTNLVEVDGRFVWRVNLDALT 240
Query: 748 QHWDKILNFPPRQESYSGPALFLIGGNSQFV----------------------------L 843
QH DKIL FP RQESY GP LFL+GGNSQFV
Sbjct: 241 QHLDKILAFPQRQESYLGPTLFLLGGNSQFVHPSHHPEIMRLFPRAQMQTVPNAGHWIHA 300
Query: 844 DSPQDFMAAIRSFL 885
D PQDF+AAIR FL
Sbjct: 301 DRPQDFIAAIRGFL 314
>ref|NP_683711.1| abhydrolase domain-containing protein 11 isoform 2 [Homo sapiens].
Length = 308
Score = 366 bits (940), Expect = e-101
Identities = 202/314 (64%), Positives = 222/314 (70%), Gaps = 31/314 (9%)
Frame = +1
Query: 37 VRARSPIPGMLRCARAWRLPHRGIGPSSPSFSRVPVALSSS---QGGTEPRPVPLSYKLL 207
+RA + MLR RAWRLP G+GP PSF+RVPVA SSS +GG EPR LL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPR-------LL 53
Query: 208 DGEVARPPLVFLHGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMS 387
DGE A P +VFLHGLFGSK NF+SIAK LAQQTGRRVLTVDARNHGDSPHSPDMSYE MS
Sbjct: 54 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRVLTVDARNHGDSPHSPDMSYEIMS 113
Query: 388 XXXXXXXXXXXXVPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVESTSSSNFPNY 567
VPCV++GHSMGGKTAMLLALQRPELVERLI VDISPVEST S+F Y
Sbjct: 114 QDLQDLLPQLGLVPCVVVGHSMGGKTAMLLALQRPELVERLIAVDISPVESTGVSHFATY 173
Query: 568 VAAMKAIDLPNGASLSSARKLASEKLSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALS 747
VAAM+AI++ + S ARKLA E+LSSVIQ ++VRQ LLTNLVEVDG FVWRVNLDAL+
Sbjct: 174 VAAMRAINIADELPRSRARKLADEQLSSVIQDMAVRQHLLTNLVEVDGRFVWRVNLDALT 233
Query: 748 QHWDKILNFPPRQESYSGPALFLIGGNSQFV----------------------------L 843
QH DKIL FP RQESY GP LFL+GGNSQFV
Sbjct: 234 QHLDKILAFPQRQESYLGPTLFLLGGNSQFVHPSHHPEIMRLFPRAQMQTVPNAGHWIHA 293
Query: 844 DSPQDFMAAIRSFL 885
D PQDF+AAIR FL
Sbjct: 294 DRPQDFIAAIRGFL 307
>ref|NP_001138836.1| abhydrolase domain-containing protein 11 isoform 8 [Homo sapiens].
Length = 258
Score = 218 bits (556), Expect = 5e-57
Identities = 111/170 (65%), Positives = 128/170 (75%), Gaps = 3/170 (1%)
Frame = +1
Query: 37 VRARSPIPGMLRCARAWRLPHRGIGPSSPSFSRVPVALSSS---QGGTEPRPVPLSYKLL 207
+RA + MLR RAWRLP G+GP PSF+RVPVA SSS +GG EPRP+PLSY+LL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
Query: 208 DGEVARPPLVFLHGLFGSKANFSSIAKALAQQTGRRVLTVDARNHGDSPHSPDMSYEAMS 387
DGE A P +VFLHGLFGSK NF+SIAK LAQQTGRRVLTVDARNHGDSPHSPDMSYE MS
Sbjct: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRVLTVDARNHGDSPHSPDMSYEIMS 120
Query: 388 XXXXXXXXXXXXVPCVLIGHSMGGKTAMLLALQRPELVERLIVVDISPVE 537
VPCV++GHSMGGKTAMLLALQR V + ++ ++ V+
Sbjct: 121 QDLQDLLPQLGLVPCVVVGHSMGGKTAMLLALQRDMAVRQHLLTNLVEVD 170
Score = 107 bits (267), Expect = 2e-23
Identities = 60/109 (55%), Positives = 68/109 (62%), Gaps = 28/109 (25%)
Frame = +1
Query: 643 LSSVIQSISVRQFLLTNLVEVDGHFVWRVNLDALSQHWDKILNFPPRQESYSGPALFLIG 822
L ++ + ++VRQ LLTNLVEVDG FVWRVNLDAL+QH DKIL FP RQESY GP LFL+G
Sbjct: 149 LLALQRDMAVRQHLLTNLVEVDGRFVWRVNLDALTQHLDKILAFPQRQESYLGPTLFLLG 208
Query: 823 GNSQFV----------------------------LDSPQDFMAAIRSFL 885
GNSQFV D PQDF+AAIR FL
Sbjct: 209 GNSQFVHPSHHPEIMRLFPRAQMQTVPNAGHWIHADRPQDFIAAIRGFL 257
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,329,468
Number of extensions: 1138996
Number of successful extensions: 4455
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4445
Number of HSP's successfully gapped: 4
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008347
(948 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 367 7e-99
>Sscrofa_Chr03
|| Length = 144787322
Score = 367 bits (185), Expect = 7e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 658 cagagcataagcgtacggcagttccttcttaccaacctggtggaggtggatgggcacttc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10697876 cagagcataagcgtacggcagttccttcttaccaacctggtggaggtggatgggcacttc 10697817
Query: 718 gtgtggagagtgaacttggacgctttgtcccagcactgggacaaaatcttgaacttccca 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10697816 gtgtggagagtgaacttggacgctttgtcccagcactgggacaaaatcttgaacttccca 10697757
Query: 778 ccacggcaagaatcctactctggaccagccctcttcctcattggtggaaactctcaattc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10697756 ccacggcaagaatcctactctggaccagccctcttcctcattggtggaaactctcaattc 10697697
Query: 838 gtgct 842
|||||
Sbjct: 10697696 gtgct 10697692
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 3 aaagacgcaaggcgtggctagcgaacagcacgaggttcgcgccaggtctccgatcccggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10699908 aaagacgcaaggcgtggctagcgaacagcacgaggttcgcgccaggtctccgatcccggg 10699849
Query: 63 gatgctccgctgcgcccgcgcctggaggctcccccatagggggatcggcccctccagtcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10699848 gatgctccgctgcgcccgcgcctggaggctcccccatagggggatcggcccctccagtcc 10699789
Query: 123 cagcttctccagagtgcctgttgcactcagcagcagccaaggcggcacagagccgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10699788 cagcttctccagagtgcctgttgcactcagcagcagccaaggcggcacagagccgagg 10699731
Score = 347 bits (175), Expect = 7e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 315 ggtgctgacagtggatgctcgaaaccatggcgacagcccccacagcccagacatgagcta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10698762 ggtgctgacagtggatgctcgaaaccatggcgacagcccccacagcccagacatgagcta 10698703
Query: 375 cgaggccatgagccaggatctgcaggacctcctgccccagctgggcctagtgccctgcgt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10698702 cgaggccatgagccaggatctgcaggacctcctgccccagctgggcctagtgccctgcgt 10698643
Query: 435 cctcattggccacagcatgggaggcaagacagccatgctgctggcacttcaaagg 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10698642 cctcattggccacagcatgggaggcaagacagccatgctgctggcacttcaaagg 10698588
Score = 333 bits (168), Expect = 1e-88
Identities = 171/172 (99%)
Strand = Plus / Minus
Query: 489 gccagagctggtggagcgcctgattgtcgtggacattagcccagtggagagcacatccag 548
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 10698154 gccagagctggtggagcgcctgattgccgtggacattagcccagtggagagcacatccag 10698095
Query: 549 ctcgaactttccgaactacgtagcagccatgaaggccatagacctcccgaatggggcatc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10698094 ctcgaactttccgaactacgtagcagccatgaaggccatagacctcccgaatggggcatc 10698035
Query: 609 cctctccagtgcccggaaactggccagtgagaagctcagctctgtcatccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10698034 cctctccagtgcccggaaactggccagtgagaagctcagctctgtcatccag 10697983
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 178 aggccggtgccgctttcctacaagcttttggacggggaggtagcccgcccgcccctcgtc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10699566 aggccggtgccgctttcctacaagcttttggacggggaggtagcccgcccgcccctcgtc 10699507
Query: 238 tttttgcatgggctctttggaagcaaagccaacttcagctccatcgccaaggccctagcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10699506 tttttgcatgggctctttggaagcaaagccaacttcagctccatcgccaaggccctagcc 10699447
Query: 298 cagcagactggcaggagggt 317
||||||||||||||||||||
Sbjct: 10699446 cagcagactggcaggagggt 10699427
Score = 180 bits (91), Expect = 9e-43
Identities = 104/107 (97%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 843 cgacagcccgcaagacttcatggctgccatccgaagcttcctggcctaaaagttgccggg 902
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10697370 cgacagcccgcaagacttcatggctgccatccgaagcttcctggcctaaaagttgccggc 10697311
Query: 903 cagaggggacatgaaaccccaaacttc-aggccccgcaagctgctcc 948
||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 10697310 cagaggggacatgaaaccccaaacttcaaggccccgcaggctgctcc 10697264
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,542,405
Number of extensions: 109
Number of successful extensions: 109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 6
Length of query: 948
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 927
Effective length of database: 2,808,413,156
Effective search space: 2603398995612
Effective search space used: 2603398995612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)