Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008354
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103563.1| interleukin-1 receptor-associated kinase 1 b... 177 1e-44
>ref|NP_001103563.1| interleukin-1 receptor-associated kinase 1 binding protein 1 [Bos
taurus].
Length = 226
Score = 177 bits (449), Expect = 1e-44
Identities = 91/105 (86%), Positives = 94/105 (89%)
Frame = +2
Query: 47 MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE 226
MSLQQ PQSRVF+EL+PW DR REN LLSGGETLPGLR PLSSA AQT TREVHVSGTAE
Sbjct: 1 MSLQQTPQSRVFVELLPWADRGRENYLLSGGETLPGLRRPLSSAPAQTPTREVHVSGTAE 60
Query: 227 VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQ 361
VSA PDRA V VRVSSTKE AAEAKKSVCRRLDYITQSL+QQGVQ
Sbjct: 61 VSASPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLRQQGVQ 105
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,036,682
Number of extensions: 1012312
Number of successful extensions: 4935
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4913
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008354
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539013.2| PREDICTED: similar to interleukin-1 receptor-as... 175 6e-44
>ref|XP_539013.2| PREDICTED: similar to interleukin-1 receptor-associated kinase 1
binding protein 1 [Canis familiaris].
Length = 305
Score = 175 bits (444), Expect = 6e-44
Identities = 90/109 (82%), Positives = 96/109 (88%)
Frame = +2
Query: 35 AAITMSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVS 214
A ITMSLQ+ PQSRVF+ELVPW DR RENN +SGGE LPGLR P SAQAQ+ATREVHVS
Sbjct: 42 ATITMSLQRTPQSRVFVELVPWADRGRENNAVSGGEALPGLRRPGPSAQAQSATREVHVS 101
Query: 215 GTAEVSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQ 361
GTAEVSA PDRA VAV VSSTKE AAEAKKSVCRRLDYITQSL+QQG+Q
Sbjct: 102 GTAEVSASPDRAQVAVLVSSTKEAAAEAKKSVCRRLDYITQSLRQQGLQ 150
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,693,439
Number of extensions: 1042874
Number of successful extensions: 5485
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5444
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008354
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353348.1| PREDICTED: interleukin-1 receptor-associated... 206 2e-53
>ref|XP_003353348.1| PREDICTED: interleukin-1 receptor-associated kinase 1-binding
protein 1-like [Sus scrofa].
Length = 260
Score = 206 bits (524), Expect = 2e-53
Identities = 105/105 (100%), Positives = 105/105 (100%)
Frame = +2
Query: 47 MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE 226
MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE
Sbjct: 1 MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE 60
Query: 227 VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQ 361
VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQ
Sbjct: 61 VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQ 105
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,542,712
Number of extensions: 655227
Number of successful extensions: 3262
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3238
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008354
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161712.1| interleukin-1 receptor-associated kinase 1-b... 139 3e-33
Alignment gi|NP_075362.3| interleukin-1 receptor-associated kinase 1-bind... 138 8e-33
>ref|NP_001161712.1| interleukin-1 receptor-associated kinase 1-binding protein 1
isoform 2 [Mus musculus].
Length = 237
Score = 139 bits (351), Expect = 3e-33
Identities = 76/106 (71%), Positives = 81/106 (76%)
Frame = +2
Query: 47 MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE 226
MSLQ AP SRVF+ELVPW DR REN+ +S E P R P A+A REVHVSG AE
Sbjct: 1 MSLQPAPASRVFMELVPWADRGRENHPISAAEAQPIGRRP-HVAEAHPGAREVHVSGAAE 59
Query: 227 VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQV 364
VSA PDRA V VRVSSTKE +AEAKKSVCRRLDYITQSLQQQG QV
Sbjct: 60 VSASPDRALVTVRVSSTKEVSAEAKKSVCRRLDYITQSLQQQGFQV 105
>ref|NP_075362.3| interleukin-1 receptor-associated kinase 1-binding protein 1
isoform 1 [Mus musculus].
Length = 259
Score = 138 bits (347), Expect = 8e-33
Identities = 75/105 (71%), Positives = 80/105 (76%)
Frame = +2
Query: 47 MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE 226
MSLQ AP SRVF+ELVPW DR REN+ +S E P R P A+A REVHVSG AE
Sbjct: 1 MSLQPAPASRVFMELVPWADRGRENHPISAAEAQPIGRRP-HVAEAHPGAREVHVSGAAE 59
Query: 227 VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQ 361
VSA PDRA V VRVSSTKE +AEAKKSVCRRLDYITQSLQQQG Q
Sbjct: 60 VSASPDRALVTVRVSSTKEVSAEAKKSVCRRLDYITQSLQQQGFQ 104
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,763,862
Number of extensions: 836289
Number of successful extensions: 3644
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3614
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008354
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010844.1| interleukin-1 receptor-associated kinase 1-b... 175 7e-44
>ref|NP_001010844.1| interleukin-1 receptor-associated kinase 1-binding protein 1 [Homo
sapiens].
Length = 260
Score = 175 bits (443), Expect = 7e-44
Identities = 89/110 (80%), Positives = 95/110 (86%)
Frame = +2
Query: 47 MSLQQAPQSRVFLELVPWVDRDRENNLLSGGETLPGLRHPLSSAQAQTATREVHVSGTAE 226
MSLQ+ P +RVF+ELVPW DR RENNL SG ETLPGLRHPLSS QAQTATREV VSGT+E
Sbjct: 1 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE 60
Query: 227 VSARPDRAHVAVRVSSTKETAAEAKKSVCRRLDYITQSLQQQGVQVRALS 376
VSA PDRA V VRVSSTKE AAEAKKSVCRRLDYITQSLQQQGVQ ++
Sbjct: 61 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENIT 110
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,757,342
Number of extensions: 1005783
Number of successful extensions: 4747
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4725
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008354
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1784 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1784 bits (900), Expect = 0.0
Identities = 965/994 (97%)
Strand = Plus / Minus
Query: 31 cccagctgccatcacaatgtcgttgcaacaggccccgcagtcgcgggtcttcttggaact 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090712 cccagctgccatcacaatgtcgttgcaacaggccccgcagtcgcgggtcttcttggaact 98090653
Query: 91 ggttccctgggtcgaccgggaccgggagaacaatctgctctcaggcggagagacgctgcc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090652 ggttccctgggtcgaccgggaccgggagaacaatctgctctcaggcggagagacgctgcc 98090593
Query: 151 tggacttcgccaccctctctcttccgcacaggcccaaactgccacccgcgaggtgcacgt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090592 tggacttcgccaccctctctcttccgcacaggcccaaactgccacccgcgaggtgcacgt 98090533
Query: 211 aagcggcacagcagaggtgtctgcgaggcccgaccgggcgcatgtggcggtgcgagtgag 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090532 aagcggcacagcagaggtgtctgcgaggcccgaccgggcgcatgtggcggtgcgagtgag 98090473
Query: 271 cagcaccaaggagacggcggccgaggccaagaagagcgtttgccgccgcctggactacat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090472 cagcaccaaggagacggcggccgaggccaagaagagcgtttgccgccgcctggactacat 98090413
Query: 331 cactcaaagcctccagcagcagggcgtgcaggtgagagctctgtctgggaggggcttcga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090412 cactcaaagcctccagcagcagggcgtgcaggtgagagctctgtctgggaggggcttcga 98090353
Query: 391 gctggatcgcggcaacccttctgcggaggtttaggccccgtcgcgcccctggggcgggag 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090352 gctggatcgcggcaacccttctgcggaggtttaggccccgtcgcgcccctggggcgggag 98090293
Query: 451 tttgtggatgtctagggtcttgagcgtctgggacacctttctgttttgtgcattcgctgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090292 tttgtggatgtctagggtcttgagcgtctgggacacctttctgttttgtgcattcgctgg 98090233
Query: 511 cgcgaggatctgaggagtgaatctttggctcttccttctaaatgaaaggaattatcagcg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090232 cgcgaggatctgaggagtgaatctttggctcttccttctaaatgaaaggaattatcagcg 98090173
Query: 571 gcagttacttgtgaaattaaagagtgcaaattaagtggggttttatttggcgatatttgc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090172 gcagttacttgtgaaattaaagagtgcaaattaagtggggttttatttggcgatatttgc 98090113
Query: 631 gatttattttcttattttgacaaactgttaaacttgaaacattagatgtaaatgcttgcc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090112 gatttattttcttattttgacaaactgttaaacttgaaacattagatgtaaatgcttgcc 98090053
Query: 691 taagtagtgtgctggagactaannnnnnnnaaattattctgcaccacggaattgacaagt 750
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 98090052 taagtagtgtgctggagactaattttttttaaattattctgcaccacggaattgacaagt 98089993
Query: 751 gaaaagcccctttcctcccaacctgataaaagctttgcatgaactagttcttcagtattt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089992 gaaaagcccctttcctcccaacctgataaaagctttgcatgaactagttcttcagtattt 98089933
Query: 811 ttcgcaaagaataatacgtgtattgggggtaggaagtgggggaaattgcatccattttca 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089932 ttcgcaaagaataatacgtgtattgggggtaggaagtgggggaaattgcatccattttca 98089873
Query: 871 ttttaaactctnnnnnnnccccaannnnnnnaagtttagtttaaaaagaaaagccagtat 930
||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 98089872 ttttaaactctaaaaaaaccccaatttttttagttttagtttaaaaagaaaagccagtat 98089813
Query: 931 attgtagaggccacatttatgaaatacctctacttaccaccgagctccctgaaaccaatc 990
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 98089812 attgtagaggccacatttatgaaatacctctacttaccacagagctccatgagaccaatc 98089753
Query: 991 cctaaataaatcttactttaaccctgcttctaag 1024
|||||||||||||||||||| ||||||||||||
Sbjct: 98089752 actaaataaatcttactttaagcctgcttctaag 98089719
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,979,836
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 3
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)