Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008358
(838 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069546.1| AP-2 complex subunit sigma [Bos taurus]. 289 2e-78
Alignment gi|XP_001256855.1| PREDICTED: AdaPtin, Small chain (clathrin as... 188 4e-48
Alignment gi|NP_001070578.1| AP-1 complex subunit sigma-1A [Bos taurus]. 142 3e-34
Alignment gi|NP_001035681.1| AP-1 complex subunit sigma-2 [Bos taurus]. 142 3e-34
Alignment gi|NP_001096766.1| AP-1 complex subunit sigma-3 [Bos taurus]. 141 8e-34
Alignment gi|NP_001035693.1| AP-4 complex subunit sigma-1 [Bos taurus]. 120 1e-27
Alignment gi|NP_001039881.1| AP-3 complex subunit sigma-1 [Bos taurus]. 114 1e-25
Alignment gi|NP_001068844.1| AP-3 complex subunit sigma-2 [Bos taurus]. 111 9e-25
>ref|NP_001069546.1| AP-2 complex subunit sigma [Bos taurus].
Length = 142
Score = 289 bits (739), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>ref|XP_001256855.1| PREDICTED: AdaPtin, Small chain (clathrin associated complex)
family member (aps-2)-like [Bos taurus].
Length = 109
Score = 188 bits (478), Expect = 4e-48
Identities = 91/92 (98%), Positives = 92/92 (100%)
Frame = +2
Query: 257 EFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKV 436
+FRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKV
Sbjct: 18 QFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKV 77
Query: 437 YTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 532
YTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
Sbjct: 78 YTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 109
>ref|NP_001070578.1| AP-1 complex subunit sigma-1A [Bos taurus].
Length = 157
Score = 142 bits (359), Expect = 3e-34
Identities = 61/134 (45%), Positives = 96/134 (71%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+R
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE + G
Sbjct: 61 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120
Query: 470 EIRETSQTKVLKQL 511
++++TS+ VLK +
Sbjct: 121 DVQDTSKKSVLKAI 134
>ref|NP_001035681.1| AP-1 complex subunit sigma-2 [Bos taurus].
Length = 160
Score = 142 bits (359), Expect = 3e-34
Identities = 64/134 (47%), Positives = 94/134 (70%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
++F+L+ +R GK RL KWY+ D EK+K+ E+ V R K +F+E+R+ KI+Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 470 EIRETSQTKVLKQL 511
E++ETS+ VLK +
Sbjct: 121 EVQETSKKNVLKAI 134
>ref|NP_001096766.1| AP-1 complex subunit sigma-3 [Bos taurus].
Length = 154
Score = 141 bits (355), Expect = 8e-34
Identities = 61/135 (45%), Positives = 93/135 (68%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI FIL+ +R GK RL KWY D E++K+ E+ ++ R + ++FV+++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFVDWKELKLVYK 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC V+ DN L LE +H +VE+L++YF NVCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 467 GEIRETSQTKVLKQL 511
GEI+ETS+ +K +
Sbjct: 121 GEIQETSKKSAVKAI 135
>ref|NP_001035693.1| AP-4 complex subunit sigma-1 [Bos taurus].
Length = 144
Score = 120 bits (301), Expect = 1e-27
Identities = 59/141 (41%), Positives = 95/141 (67%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y + +++ L EV R + +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL++YF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L +
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>ref|NP_001039881.1| AP-3 complex subunit sigma-1 [Bos taurus].
Length = 193
Score = 114 bits (284), Expect = 1e-25
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE 532
EM + G + ET+ +++ Q+ LE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>ref|NP_001068844.1| AP-3 complex subunit sigma-2 [Bos taurus].
Length = 193
Score = 111 bits (277), Expect = 9e-25
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ IL+ N GK RL ++Y +F ++ +Q+++ E +V RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
+K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE*GRPPGFSPLPGPACS 580
E+ + G + ET+ +++ Q+ LE G S P A S
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE-KSEGGLSAAPARAVS 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,434,167
Number of extensions: 953785
Number of successful extensions: 6982
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6806
Number of HSP's successfully gapped: 8
Length of query: 279
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 178
Effective length of database: 14,339,486
Effective search space: 2552428508
Effective search space used: 2552428508
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008358
(838 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533634.1| PREDICTED: similar to Clathrin coat assembly pr... 289 3e-78
Alignment gi|XP_865231.1| PREDICTED: similar to adaptor-related protein c... 190 2e-48
Alignment gi|XP_854230.1| PREDICTED: similar to Adapter-related protein c... 145 6e-35
Alignment gi|XP_536088.2| PREDICTED: similar to adaptor-related protein c... 139 3e-33
Alignment gi|XP_861120.1| PREDICTED: similar to Adapter-related protein c... 124 1e-28
Alignment gi|XP_850275.1| PREDICTED: similar to Adapter-related protein c... 124 1e-28
Alignment gi|XP_858735.1| PREDICTED: similar to Adapter-related protein c... 114 1e-25
Alignment gi|XP_537405.1| PREDICTED: similar to Adapter-related protein c... 112 3e-25
Alignment gi|XP_536191.2| PREDICTED: similar to Adapter-related protein c... 111 1e-24
Alignment gi|XP_849444.1| PREDICTED: similar to Adapter-related protein c... 74 2e-13
>ref|XP_533634.1| PREDICTED: similar to Clathrin coat assembly protein AP17 (Clathrin
coat associated protein AP17) (Plasma membrane adaptor
AP-2 17 kDa protein) (Clathrin assembly protein 2 small
chain) isoform 1 [Canis familiaris].
Length = 142
Score = 289 bits (739), Expect = 3e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>ref|XP_865231.1| PREDICTED: similar to adaptor-related protein complex 2, sigma 1
subunit isoform AP17delta isoform 2 [Canis familiaris].
Length = 104
Score = 190 bits (482), Expect = 2e-48
Identities = 104/142 (73%), Positives = 104/142 (73%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 50 ---------------------------VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 83 GEIRETSQTKVLKQLLMLQSLE 104
>ref|XP_854230.1| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B
subunit (Sigma-adaptin 1B) (Adaptor protein complex AP-1
sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin
sigma-1B subunit) (Clathrin assembly protein complex 1
sigma-1B small chain) (Sigma 1B s... [Canis familiaris].
Length = 349
Score = 145 bits (365), Expect = 6e-35
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 17/166 (10%)
Frame = +2
Query: 65 DRGLPEAGVWTGVAM-----------------IRFILIQNRAGKTRLAKWYMQFDDDEKQ 193
DRG P A T A ++F+L+ +R GK RL KWY+ D EK+
Sbjct: 158 DRGFPSAAAGTAAAAAAAAAGRAPPRPRPAAAMQFMLLFSRQGKLRLQKWYVPLSDKEKK 217
Query: 194 KLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVE 373
K+ E+ V R K +F+E+R+ KI+Y+RYA LYFC ++ DN L LE IH +VE
Sbjct: 218 KITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVE 277
Query: 374 VLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQL 511
+L++YF +VCELD++FNF K Y ++DE L GE++ETS+ VLK +
Sbjct: 278 LLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAI 323
>ref|XP_536088.2| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3
[Canis familiaris].
Length = 157
Score = 139 bits (350), Expect = 3e-33
Identities = 60/134 (44%), Positives = 92/134 (68%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
I FIL+ +R GK RL KWY D E++K+ E+ ++ R + ++FV+++ K++Y+R
Sbjct: 5 IHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFVDWKELKLVYKR 64
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC V+ DN L LE +H +VE+L++YF NVCELD++FNF K Y ++DE + G
Sbjct: 65 YASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIMGG 124
Query: 470 EIRETSQTKVLKQL 511
EI+ETS+ +K +
Sbjct: 125 EIQETSKKSAVKAI 138
>ref|XP_861120.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 3 [Canis familiaris].
Length = 144
Score = 124 bits (310), Expect = 1e-28
Identities = 61/141 (43%), Positives = 96/141 (68%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y + +++ L EV R ++ +F+EF++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEFKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L +
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>ref|XP_850275.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 2 [Canis familiaris].
Length = 144
Score = 124 bits (310), Expect = 1e-28
Identities = 61/141 (43%), Positives = 96/141 (68%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y + +++ L EV R ++ +F+EF++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEFKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L +
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>ref|XP_858735.1| PREDICTED: similar to Adapter-related protein complex 3 sigma 1
subunit (Sigma-adaptin 3a) (AP-3 complex sigma-3A
subunit) (Sigma-3A-adaptin) isoform 3 [Canis
familiaris].
Length = 162
Score = 114 bits (284), Expect = 1e-25
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE 532
EM + G + ET+ +++ Q+ LE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>ref|XP_537405.1| PREDICTED: similar to Adapter-related protein complex 4 sigma 1
subunit (Sigma subunit of AP-4) (AP-4 adapter complex
sigma subunit) isoform 1 [Canis familiaris].
Length = 140
Score = 112 bits (281), Expect = 3e-25
Identities = 58/141 (41%), Positives = 93/141 (65%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y + +++ L EV R ++ +F+EF++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEFKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRV----IMFNLDKVHIILDEMVLN 116
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L +
Sbjct: 117 GCIVETNRARILAPLLILDKM 137
>ref|XP_536191.2| PREDICTED: similar to Adapter-related protein complex 3 sigma 2
subunit (Sigma-adaptin 3b) (AP-3 complex sigma-3B
subunit) (Sigma-3B-adaptin) [Canis familiaris].
Length = 193
Score = 111 bits (277), Expect = 1e-24
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ IL+ N GK RL ++Y +F ++ +Q+++ E +V RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
+K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE*GRPPGFSPLPGPACS 580
E+ + G + ET+ +++ Q+ LE G S P A S
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE-KSEGGLSAAPARAVS 163
>ref|XP_849444.1| PREDICTED: similar to Adapter-related protein complex 3 sigma 1
subunit (Sigma-adaptin 3a) (AP-3 complex sigma-3A
subunit) (Sigma-3A-adaptin) isoform 2 [Canis
familiaris].
Length = 169
Score = 73.6 bits (179), Expect = 2e-13
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVE------FRN 268
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
K+IYR YA LYF CVD +++ L L+ I +V+ ++
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLI------------------------QVHNIL 96
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE 532
EM + G + ET+ +++ Q+ LE
Sbjct: 97 AEMVMGGMVLETNMNEIVTQIDAQNKLE 124
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,656,303
Number of extensions: 968832
Number of successful extensions: 7432
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7229
Number of HSP's successfully gapped: 10
Length of query: 279
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 178
Effective length of database: 15,507,568
Effective search space: 2760347104
Effective search space used: 2760347104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008358
(838 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127287.1| PREDICTED: AP-2 complex subunit sigma-like [... 289 1e-78
Alignment gi|XP_003361534.1| PREDICTED: AP-1 complex subunit sigma-1A-lik... 144 5e-35
Alignment gi|XP_003135001.2| PREDICTED: AP-1 complex subunit sigma-2-like... 142 2e-34
Alignment gi|XP_003361133.1| PREDICTED: hypothetical protein LOC100627432... 139 2e-33
Alignment gi|NP_001230426.1| AP-4 complex subunit sigma-1 [Sus scrofa]. 122 2e-28
Alignment gi|XP_001928034.1| PREDICTED: UPF0552 protein C15orf38 homolog ... 111 4e-25
Alignment gi|XP_003361689.1| PREDICTED: AP-3 complex subunit sigma-1-like... 101 6e-22
Alignment gi|XP_003356710.1| PREDICTED: UPF0552 protein C15orf38 homolog ... 91 6e-19
Alignment gi|XP_003357018.1| PREDICTED: AP-1 complex subunit sigma-2-like... 88 5e-18
Alignment gi|XP_003357012.1| PREDICTED: AP-1 complex subunit sigma-2-like... 88 5e-18
>ref|XP_003127287.1| PREDICTED: AP-2 complex subunit sigma-like [Sus scrofa].
Length = 142
Score = 289 bits (739), Expect = 1e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>ref|XP_003361534.1| PREDICTED: AP-1 complex subunit sigma-1A-like [Sus scrofa].
Length = 158
Score = 144 bits (364), Expect = 5e-35
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 467 GEIRETSQTKVLKQL 511
G++++TS+ VLK +
Sbjct: 121 GDVQDTSKKSVLKAI 135
>ref|XP_003135001.2| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 157
Score = 142 bits (359), Expect = 2e-34
Identities = 64/134 (47%), Positives = 94/134 (70%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
++F+L+ +R GK RL KWY+ D EK+K+ E+ V R K +F+E+R+ KI+Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 470 EIRETSQTKVLKQL 511
E++ETS+ VLK +
Sbjct: 121 EVQETSKKNVLKAI 134
>ref|XP_003361133.1| PREDICTED: hypothetical protein LOC100627432 [Sus scrofa].
Length = 349
Score = 139 bits (349), Expect = 2e-33
Identities = 59/134 (44%), Positives = 92/134 (68%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
I FIL+ +R GK RL KWY D E++K+ E+ ++ R + ++F++++ K++Y+R
Sbjct: 197 IHFILLFSRQGKLRLQKWYTTLPDKERKKITREIVQIILSRGQRTSSFIDWKELKLVYKR 256
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC V+ DN L LE +H +VE+L++YF NVCELD++FNF K Y ++DE + G
Sbjct: 257 YASLYFCCAVENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIMGG 316
Query: 470 EIRETSQTKVLKQL 511
EI+ETS+ +K +
Sbjct: 317 EIQETSKKSAVKAI 330
>ref|NP_001230426.1| AP-4 complex subunit sigma-1 [Sus scrofa].
Length = 144
Score = 122 bits (307), Expect = 2e-28
Identities = 60/141 (42%), Positives = 96/141 (68%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y + +++ L EV R ++ +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L +
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>ref|XP_001928034.1| PREDICTED: UPF0552 protein C15orf38 homolog isoform 1 [Sus scrofa].
Length = 193
Score = 111 bits (278), Expect = 4e-25
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ IL+ N GK RL ++Y +F ++ +Q+++ E +V RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
+K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE*GRPPGFSPLPGPACS 580
E+ + G + ET+ +++ Q+ LE G S P A S
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNKLE-KSEGGLSAAPARAVS 163
>ref|XP_003361689.1| PREDICTED: AP-3 complex subunit sigma-1-like, partial [Sus scrofa].
Length = 189
Score = 101 bits (251), Expect = 6e-22
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ ILI N G+ +L K+Y + D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKVILIFNNQGRQQLPKFYQPYSRDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
K+IYR YA LYF VD + L L+ I FVE L + F N+CELDL+F+ K++ ++
Sbjct: 61 NKLIYRHYATLYFVFHVDSSQTELGILDLIQVFVETLEKCFENICELDLIFHVDKLHNIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE*GRPPGFSPLPGPACSL 583
+M + G++ E + ++ Q+ LE G PAC+L
Sbjct: 121 ADMVMGGKVLEANXXXIVTQIDAQNKLE---KSGAGLAGAPACAL 162
>ref|XP_003356710.1| PREDICTED: UPF0552 protein C15orf38 homolog isoform 2 [Sus scrofa].
Length = 394
Score = 91.3 bits (225), Expect = 6e-19
Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Frame = +2
Query: 170 QFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIIYRRYAGLYFCICVDVND 331
++ ++ +Q+++ E +V RD NF+E ++K+IYR YA LYF CVD ++
Sbjct: 223 EWPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSE 282
Query: 332 NNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQL 511
+ L L+ I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++ Q+
Sbjct: 283 SELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQI 342
Query: 512 LMLQSLE*GRPPGFSPLPGPACS 580
LE G S P A S
Sbjct: 343 EAQNKLE-KSEGGLSAAPARAVS 364
>ref|XP_003357018.1| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 119
Score = 88.2 bits (217), Expect = 5e-18
Identities = 39/73 (53%), Positives = 53/73 (72%)
Frame = +2
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE IH++VE+L++YF VCELD++FNF K Y ++DE L
Sbjct: 22 RYASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLG 81
Query: 467 GEIRETSQTKVLK 505
E++ETS+ VLK
Sbjct: 82 EEVQETSKKNVLK 94
>ref|XP_003357012.1| PREDICTED: AP-1 complex subunit sigma-2-like [Sus scrofa].
Length = 146
Score = 88.2 bits (217), Expect = 5e-18
Identities = 39/73 (53%), Positives = 53/73 (72%)
Frame = +2
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE IH++VE+L++YF VCELD++FNF K Y ++DE L
Sbjct: 49 RYASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLG 108
Query: 467 GEIRETSQTKVLK 505
E++ETS+ VLK
Sbjct: 109 EEVQETSKKNVLK 121
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,812,349
Number of extensions: 637682
Number of successful extensions: 5215
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4854
Number of HSP's successfully gapped: 10
Length of query: 279
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 181
Effective length of database: 8,904,026
Effective search space: 1611628706
Effective search space used: 1611628706
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008358
(838 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_941015.2| AP-2 complex subunit sigma [Mus musculus]. 289 2e-78
Alignment gi|NP_031483.1| AP-1 complex subunit sigma-1A [Mus musculus]. 144 6e-35
Alignment gi|NP_081163.2| AP-1 complex subunit sigma-2 [Mus musculus]. 142 2e-34
Alignment gi|NP_898848.1| AP-1 complex subunit sigma-3 [Mus musculus]. 137 8e-33
Alignment gi|NP_068356.1| AP-4 complex subunit sigma-1 [Mus musculus]. 122 3e-28
Alignment gi|NP_033811.1| AP-3 complex subunit sigma-1 [Mus musculus]. 114 1e-25
Alignment gi|NP_033812.3| AP-3 complex subunit sigma-2 [Mus musculus]. 111 8e-25
>ref|NP_941015.2| AP-2 complex subunit sigma [Mus musculus].
Length = 142
Score = 289 bits (739), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>ref|NP_031483.1| AP-1 complex subunit sigma-1A [Mus musculus].
Length = 158
Score = 144 bits (364), Expect = 6e-35
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 467 GEIRETSQTKVLKQL 511
G++++TS+ VLK +
Sbjct: 121 GDVQDTSKKSVLKAI 135
>ref|NP_081163.2| AP-1 complex subunit sigma-2 [Mus musculus].
Length = 160
Score = 142 bits (359), Expect = 2e-34
Identities = 64/134 (47%), Positives = 94/134 (70%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
++F+L+ +R GK RL KWY+ D EK+K+ E+ V R K +F+E+R+ KI+Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 470 EIRETSQTKVLKQL 511
E++ETS+ VLK +
Sbjct: 121 EVQETSKKNVLKAI 134
>ref|NP_898848.1| AP-1 complex subunit sigma-3 [Mus musculus].
Length = 154
Score = 137 bits (346), Expect = 8e-33
Identities = 59/135 (43%), Positives = 92/135 (68%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI FIL+ +R GK RL KWY D E++K+ ++ V R + ++F++++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYK 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE +H +VE+L++YF NVCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 467 GEIRETSQTKVLKQL 511
GEI+ETS+ +K +
Sbjct: 121 GEIQETSKKTAVKAI 135
>ref|NP_068356.1| AP-4 complex subunit sigma-1 [Mus musculus].
Length = 144
Score = 122 bits (307), Expect = 3e-28
Identities = 61/141 (43%), Positives = 95/141 (67%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y D +++ L EV R ++ +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL+ YF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L L
Sbjct: 121 GCIVETNRARILAPLLILDKL 141
>ref|NP_033811.1| AP-3 complex subunit sigma-1 [Mus musculus].
Length = 193
Score = 114 bits (284), Expect = 1e-25
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE 532
EM + G + ET+ +++ Q+ LE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>ref|NP_033812.3| AP-3 complex subunit sigma-2 [Mus musculus].
Length = 193
Score = 111 bits (277), Expect = 8e-25
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ IL+ N GK RL ++Y +F ++ +Q+++ E +V RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
+K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE*GRPPGFSPLPGPACS 580
E+ + G + ET+ +++ Q+ LE G S P A S
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE-KSEGGLSAAPARAVS 163
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,898,847
Number of extensions: 760415
Number of successful extensions: 5140
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4984
Number of HSP's successfully gapped: 7
Length of query: 279
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 179
Effective length of database: 12,613,959
Effective search space: 2257898661
Effective search space used: 2257898661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008358
(838 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004060.2| AP-2 complex subunit sigma isoform AP17 [Homo s... 289 2e-78
Alignment gi|NP_067586.1| AP-2 complex subunit sigma isoform AP17delta [H... 190 2e-48
Alignment gi|NP_001274.1| AP-1 complex subunit sigma-1A [Homo sapiens]. 144 8e-35
Alignment gi|NP_003907.3| AP-1 complex subunit sigma-2 [Homo sapiens]. 142 3e-34
Alignment gi|NP_001034658.1| AP-1 complex subunit sigma-3 [Homo sapiens]. 140 2e-33
Alignment gi|NP_001121598.1| AP-4 complex subunit sigma-1 isoform 2 [Homo... 123 2e-28
Alignment gi|NP_001275.1| AP-3 complex subunit sigma-1 [Homo sapiens]. 114 1e-25
Alignment gi|NP_005820.1| AP-3 complex subunit sigma-2 [Homo sapiens]. 111 9e-25
Alignment gi|NP_009008.2| AP-4 complex subunit sigma-1 isoform 1 [Homo sa... 94 1e-19
Alignment gi|NP_001185987.1| C15orf38-AP3S2 fusion protein [Homo sapiens]. 91 1e-18
>ref|NP_004060.2| AP-2 complex subunit sigma isoform AP17 [Homo sapiens].
Length = 142
Score = 289 bits (739), Expect = 2e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>ref|NP_067586.1| AP-2 complex subunit sigma isoform AP17delta [Homo sapiens].
Length = 104
Score = 190 bits (482), Expect = 2e-48
Identities = 104/142 (73%), Positives = 104/142 (73%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 50 ---------------------------VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82
Query: 467 GEIRETSQTKVLKQLLMLQSLE 532
GEIRETSQTKVLKQLLMLQSLE
Sbjct: 83 GEIRETSQTKVLKQLLMLQSLE 104
>ref|NP_001274.1| AP-1 complex subunit sigma-1A [Homo sapiens].
Length = 158
Score = 144 bits (364), Expect = 8e-35
Identities = 62/135 (45%), Positives = 97/135 (71%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 467 GEIRETSQTKVLKQL 511
G++++TS+ VLK +
Sbjct: 121 GDVQDTSKKSVLKAI 135
>ref|NP_003907.3| AP-1 complex subunit sigma-2 [Homo sapiens].
Length = 157
Score = 142 bits (359), Expect = 3e-34
Identities = 64/134 (47%), Positives = 94/134 (70%)
Frame = +2
Query: 110 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 289
++F+L+ +R GK RL KWY+ D EK+K+ E+ V R K +F+E+R+ KI+Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 290 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 469
YA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 470 EIRETSQTKVLKQL 511
E++ETS+ VLK +
Sbjct: 121 EVQETSKKNVLKAI 134
>ref|NP_001034658.1| AP-1 complex subunit sigma-3 [Homo sapiens].
Length = 154
Score = 140 bits (352), Expect = 2e-33
Identities = 60/135 (44%), Positives = 94/135 (69%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI FIL+ +R GK RL KWY+ D E++K+ E+ ++ R + ++FV+++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
RYA LYFC ++ DN L LE +H +VE+L++YF NVCELD++FNF K Y ++DE +
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 467 GEIRETSQTKVLKQL 511
GEI+ETS+ +K +
Sbjct: 121 GEIQETSKKIAVKAI 135
>ref|NP_001121598.1| AP-4 complex subunit sigma-1 isoform 2 [Homo sapiens].
Length = 144
Score = 123 bits (308), Expect = 2e-28
Identities = 61/141 (43%), Positives = 95/141 (67%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y D +++ L EV R + +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 466
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD++FN KV+ ++DEM L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 467 GEIRETSQTKVLKQLLMLQSL 529
G I ET++ ++L LL+L +
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>ref|NP_001275.1| AP-3 complex subunit sigma-1 [Homo sapiens].
Length = 193
Score = 114 bits (284), Expect = 1e-25
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ ILI N GK RL+K+Y + +D +Q++I E +V+ RD NF+E +
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE 532
EM + G + ET+ +++ Q+ LE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>ref|NP_005820.1| AP-3 complex subunit sigma-2 [Homo sapiens].
Length = 193
Score = 111 bits (277), Expect = 9e-25
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 268
MI+ IL+ N GK RL ++Y +F ++ +Q+++ E +V RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 269 FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 448
+K+IYR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 449 DEMFLAGEIRETSQTKVLKQLLMLQSLE*GRPPGFSPLPGPACS 580
E+ + G + ET+ +++ Q+ LE G S P A S
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE-KSEGGLSAAPARAVS 163
>ref|NP_009008.2| AP-4 complex subunit sigma-1 isoform 1 [Homo sapiens].
Length = 159
Score = 94.4 bits (233), Expect = 1e-19
Identities = 46/105 (43%), Positives = 70/105 (66%)
Frame = +2
Query: 107 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 286
MI+F L+ N+ G+TRL+K+Y D +++ L EV R + +F+E+++FK+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 287 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVF 421
+YA L+ + V+ +N +A E IHNFVEVL+EYF V ELD+ F
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSF 105
>ref|NP_001185987.1| C15orf38-AP3S2 fusion protein [Homo sapiens].
Length = 394
Score = 90.9 bits (224), Expect = 1e-18
Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Frame = +2
Query: 170 QFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIIYRRYAGLYFCICVDVND 331
++ ++ +Q+++ E +V RD NF+E ++K+IYR YA LYF CVD ++
Sbjct: 223 EWPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSE 282
Query: 332 NNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQL 511
+ L L+ I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++ Q+
Sbjct: 283 SELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQI 342
Query: 512 LMLQSLE*GRPPGFSPLPGPACS 580
LE G S P A S
Sbjct: 343 EAQNRLE-KSEGGLSAAPARAVS 364
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,953,438
Number of extensions: 935339
Number of successful extensions: 6536
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6381
Number of HSP's successfully gapped: 10
Length of query: 279
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 178
Effective length of database: 14,967,800
Effective search space: 2664268400
Effective search space used: 2664268400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008358
(838 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 765 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 765 bits (386), Expect = 0.0
Identities = 386/386 (100%)
Strand = Plus / Minus
Query: 432 aggtttacacggtcgtggacgagatgttcctggccggtgagatccgtgagaccagccaga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066800 aggtttacacggtcgtggacgagatgttcctggccggtgagatccgtgagaccagccaga 48066741
Query: 492 cgaaggtgctcaaacagctgctgatgctgcagtccctggagtgagggcggccgcccggct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066740 cgaaggtgctcaaacagctgctgatgctgcagtccctggagtgagggcggccgcccggct 48066681
Query: 552 tctcacccctccccggaccagcctgctccctccccgttcccaggcctggcatcgttgccc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066680 tctcacccctccccggaccagcctgctccctccccgttcccaggcctggcatcgttgccc 48066621
Query: 612 cctgcggctcctccctcagctgcccaggaggaaggcacccagctgggtctgggccacaag 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066620 cctgcggctcctccctcagctgcccaggaggaaggcacccagctgggtctgggccacaag 48066561
Query: 672 ggaggaagccccaccccacggcccctgggccccaactgcgggcagaggccacttcgcgtg 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066560 ggaggaagccccaccccacggcccctgggccccaactgcgggcagaggccacttcgcgtg 48066501
Query: 732 taccgagtacccgtgcctgttgtcattgtgtgatgctgtgagtgcgtgcgtggagccccc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48066500 taccgagtacccgtgcctgttgtcattgtgtgatgctgtgagtgcgtgcgtggagccccc 48066441
Query: 792 caataaatctgtggtccccgcctggc 817
||||||||||||||||||||||||||
Sbjct: 48066440 caataaatctgtggtccccgcctggc 48066415
Score = 299 bits (151), Expect = 1e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 109 gatccgcttcatcctcatccagaaccgggcaggcaagacgcgcctggccaagtggtacat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48071023 gatccgcttcatcctcatccagaaccgggcaggcaagacgcgcctggccaagtggtacat 48070964
Query: 169 gcagtttgatgatgacgagaaacagaagctgattgaggaagtgcacgccgtggtcactgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48070963 gcagtttgatgatgacgagaaacagaagctgattgaggaagtgcacgccgtggtcactgt 48070904
Query: 229 ccgagatgccaaacacaccaactttgtggag 259
|||||||||||||||||||||||||||||||
Sbjct: 48070903 ccgagatgccaaacacaccaactttgtggag 48070873
Score = 234 bits (118), Expect = 6e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 258 agttccggaacttcaagatcatttaccgacgctacgccggcctctacttctgcatctgcg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48067433 agttccggaacttcaagatcatttaccgacgctacgccggcctctacttctgcatctgcg 48067374
Query: 318 tggacgtcaacgacaacaacctggcctacctggaggccatccacaactttgtggaggt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48067373 tggacgtcaacgacaacaacctggcctacctggaggccatccacaactttgtggaggt 48067316
Score = 208 bits (105), Expect = 4e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 1 gaagtccgctctagccccgggtgccccaacagccgccaaagcccgagcctcccagaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48073917 gaagtccgctctagccccgggtgccccaacagccgccaaagcccgagcctcccagaagcc 48073858
Query: 61 gtgggaccggggcctcccagaagctggggtctggacgggggtcgccatg 109
||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 48073857 gtgggaccggggcctcccagaagctggggtccggacgggggtcgccatg 48073809
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 372 aggtcttaaatgagtatttccacaatgtctgtgaactggacctggtgttcaacttctaca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48067049 aggtcttaaatgagtatttccacaatgtctgtgaactggacctggtgttcaacttctaca 48066990
Query: 432 aggt 435
||||
Sbjct: 48066989 aggt 48066986
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,289,110
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 5
Length of query: 838
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 817
Effective length of database: 2,808,413,156
Effective search space: 2294473548452
Effective search space used: 2294473548452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)