Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008359
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776438.2| CD44 antigen precursor [Bos taurus]. 443 e-124
Alignment gi|NP_991384.2| lymphatic vessel endothelial hyaluronic acid re... 73 5e-13
Alignment gi|NP_001007814.1| tumor necrosis factor-inducible gene 6 prote... 64 2e-10
>ref|NP_776438.2| CD44 antigen precursor [Bos taurus].
Length = 368
Score = 443 bits (1140), Expect = e-124
Identities = 220/285 (77%), Positives = 230/285 (80%), Gaps = 6/285 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL
Sbjct: 1 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQMEAA NIGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEAARNIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMA-----PE 703
ASAPP EDCTSVTDLPN FEGPITITIVNRDGTRYTKKGEYRTNPEDINPS+ P+
Sbjct: 121 ASAPPGEDCTSVTDLPNAFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSVVSPSSPPD 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPTT-THPDQEGPWVSSNPEDTPATKDQDPYFDPSGR 880
D+M IFHTHLPT PDQ+GPWVSS PE+T T+D DPSGR
Sbjct: 181 DEMSSGSPSERSTSGGYSIFHTHLPTVHPSPDQDGPWVSSEPENTSDTRDYGSSHDPSGR 240
Query: 881 SFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
S+TT NTTSGP+RK QIPEWLIILASLLA
Sbjct: 241 SYTTHASESAGHSSGSEEHGANTTSGPMRKPQIPEWLIILASLLA 285
>ref|NP_991384.2| lymphatic vessel endothelial hyaluronic acid receptor 1 precursor
[Bos taurus].
Length = 322
Score = 72.8 bits (177), Expect = 5e-13
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = +2
Query: 218 LVQLSLAQIDLNIT--CRYAGVFHVEKNGRYSISKTEAADLCKAFNSTLPTMAQMEAALN 391
LVQ SL +L+I CR GV V K + ++ TEA + C+ TL + Q+E A
Sbjct: 20 LVQGSLRSEELSILGPCRIMGVTLVTKKTQPLLNFTEAQEACRLVGLTLASQDQVEEARK 79
Query: 392 IGFETCRYGFIDGH-VVIPRIHPNAICAANNTGVYILASN-TSQYDTYCFNASAPPEEDC 565
GFETC YG++ VVIPRI N C + GV I S+ +S++ +YC N+S C
Sbjct: 80 FGFETCSYGWVKNQFVVIPRIISNPKCGKSGVGVVIWRSSLSSRHRSYCHNSSDIWINSC 139
Query: 566 -----TSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTN-PEDINPSMAP 700
T+ L NT T ++ D T E T+ P+ + ++AP
Sbjct: 140 LPEIITTDDPLFNTETATYTTKLMVSDSTH----SELSTDGPDYVTTTVAP 186
>ref|NP_001007814.1| tumor necrosis factor-inducible gene 6 protein [Bos taurus].
Length = 280
Score = 64.3 bits (155), Expect = 2e-10
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Frame = +2
Query: 269 AGVFHVE-KNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGFI-DGHVVI 442
AGV+H E ++G+Y ++ EA +C+ L T Q+EAA IGF C G++ G V
Sbjct: 35 AGVYHREARSGKYKLTYAEAKAVCEYEGGHLATYKQLEAARKIGFHVCAAGWMAKGRVGY 94
Query: 443 PRIHPNAICAANNTGVY---ILASNTSQYDTYCFNASAPPEEDCTSV-TDLPNTFEGP 604
P + P C TG+ I + + ++D YC+N P ++C V TD F+ P
Sbjct: 95 PIVKPGPNCGFGKTGIIDYGIRLNRSERWDAYCYN---PHAKECGGVFTDPKRIFKSP 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,452,543
Number of extensions: 1380290
Number of successful extensions: 5565
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5546
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008359
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183951.1| CD44 antigen [Canis lupus familiaris]. 400 e-112
Alignment gi|XP_854301.1| PREDICTED: similar to extracellular link domain... 76 4e-14
Alignment gi|XP_533354.2| PREDICTED: similar to Tumor necrosis factor-ind... 65 1e-10
Alignment gi|XP_541851.2| PREDICTED: similar to Stabilin-1 precursor (FEE... 59 6e-09
>ref|NP_001183951.1| CD44 antigen [Canis lupus familiaris].
Length = 363
Score = 400 bits (1029), Expect = e-112
Identities = 201/280 (71%), Positives = 216/280 (77%), Gaps = 1/280 (0%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD W AWGLCL++LSLAQIDLNITCRYAGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKLGWHLAWGLCLLRLSLAQIDLNITCRYAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL++GFETCRYGFI+GHVVIPRI PNAICAAN+TGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMERALSVGFETCRYGFIEGHVVIPRIQPNAICAANHTGVYILISNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVT LPN F+GPITITIVNRDGTRY++KGEYRTNPEDINPS +DD+
Sbjct: 121 ASAPPEEDCTSVTHLPNAFDGPITITIVNRDGTRYSQKGEYRTNPEDINPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTT-THPDQEGPWVSSNPEDTPATKDQDPYFDPSGRSFTTX 895
IFHTHLPT DQ+ VSSN + TP TKD D PS RS TT
Sbjct: 181 GSSSERSTSAGYNIFHTHLPTAYPTEDQDSSRVSSNSDHTPITKDHDSSVHPSERSHTTH 240
Query: 896 XXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
NTTSGP+RK QIPEWLIILASLLA
Sbjct: 241 GSESAGHSSGSQEGGANTTSGPMRKPQIPEWLIILASLLA 280
>ref|XP_854301.1| PREDICTED: similar to extracellular link domain containing 1 [Canis
familiaris].
Length = 324
Score = 76.3 bits (186), Expect = 4e-14
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Frame = +2
Query: 227 LSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFET 406
L + ++ ++ CR GV V K ++ TEA + C+ TL + Q+EAA GFET
Sbjct: 25 LRVEELSISGPCRIVGVTLVNKKTIQQLNFTEAQEACRLMGLTLASKDQVEAARRSGFET 84
Query: 407 CRYGFI-DGHVVIPRIHPNAICAANNTGVYILASNTS-QYDTYCFNASAPPEEDC----- 565
C YG++ D +VIPRI PN C N GV + ++ S ++ YC+N+S C
Sbjct: 85 CSYGWVADKLLVIPRILPNPKCGKNGIGVLVWRNSLSKKFLAYCYNSSDTWINSCIPEII 144
Query: 566 TSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAP 700
T+ + N E T ++ D T + P P++AP
Sbjct: 145 TTTDPIFNIQETIYTTEMIVSDSTYSASSTD---APYSATPTLAP 186
>ref|XP_533354.2| PREDICTED: similar to Tumor necrosis factor-inducible protein TSG-6
precursor (TNF-stimulated gene 6 protein) [Canis
familiaris].
Length = 344
Score = 65.1 bits (157), Expect = 1e-10
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Frame = +2
Query: 269 AGVFHVE-KNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGFI-DGHVVI 442
AGV+H E ++GRY ++ EA +C+ L T Q+EAA IGF C G++ G V
Sbjct: 102 AGVYHREARSGRYRLTYAEAKAVCEFEGGRLATYKQLEAARKIGFHVCAAGWMAKGRVGY 161
Query: 443 PRIHPNAICAANNTGVY---ILASNTSQYDTYCFNASAPPEEDCTSV-TDLPNTFEGP 604
P + P C TG+ + + + ++D YC+N P ++C V TD F+ P
Sbjct: 162 PIVKPGPNCGFGKTGIIDYGVRLNRSERWDAYCYN---PHAKECGGVFTDPKRIFKSP 216
>ref|XP_541851.2| PREDICTED: similar to Stabilin-1 precursor (FEEL-1 protein) (MS-1
antigen) [Canis familiaris].
Length = 2621
Score = 59.3 bits (142), Expect = 6e-09
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Frame = +2
Query: 245 DLNITCRYAGVFHVEK-NGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGF 421
DL+ + AGVFH++ +GRY ++ +EA C A + L ++ Q+ AA +GF C G+
Sbjct: 2249 DLHFQEKQAGVFHLQAPSGRYGLNFSEAEAACAAQGAVLASLPQLSAAQKLGFHLCLLGW 2308
Query: 422 I-DGHVVIPRIHPNAICAANNTGVYILA--SNTSQ-YDTYCF 535
+ +G P + P A C GV L N S+ +D YC+
Sbjct: 2309 LANGSAAHPVVFPAADCGGGQVGVVSLGIRKNRSECWDAYCY 2350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,440,540
Number of extensions: 1421276
Number of successful extensions: 5735
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5712
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008359
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353952.1| PREDICTED: CD44 antigen-like [Sus scrofa]. 531 e-151
Alignment gi|XP_003353954.1| PREDICTED: CD44 antigen-like [Sus scrofa]. 488 e-138
Alignment gi|XP_003353953.1| PREDICTED: CD44 antigen-like [Sus scrofa]. 459 e-129
Alignment gi|XP_003122916.1| PREDICTED: CD44 antigen-like isoform 3 [Sus ... 458 e-129
Alignment gi|XP_003122915.1| PREDICTED: CD44 antigen-like isoform 2 [Sus ... 457 e-129
Alignment gi|XP_003122914.1| PREDICTED: CD44 antigen-like isoform 1 [Sus ... 457 e-129
Alignment gi|XP_003359767.1| PREDICTED: tumor necrosis factor-inducible g... 64 2e-10
Alignment gi|NP_001153079.1| tumor necrosis factor-inducible gene 6 prote... 60 2e-09
Alignment gi|XP_003353951.1| PREDICTED: CD44 antigen-like, partial [Sus s... 50 2e-06
>ref|XP_003353952.1| PREDICTED: CD44 antigen-like [Sus scrofa].
Length = 374
Score = 531 bits (1368), Expect = e-151
Identities = 258/291 (88%), Positives = 259/291 (89%)
Frame = +2
Query: 143 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 322
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
Sbjct: 1 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 60
Query: 323 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 502
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
Sbjct: 61 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 120
Query: 503 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 682
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
Sbjct: 121 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 180
Query: 683 NPSMAPEDDMXXXXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPY 862
NP+MAPEDDM IFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPY
Sbjct: 181 NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPY 240
Query: 863 FDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
FDPSGRSFTT NTTSGPIRKSQIPEWLIILASLLA
Sbjct: 241 FDPSGRSFTTHGSESAGHSSGSQEGEANTTSGPIRKSQIPEWLIILASLLA 291
>ref|XP_003353954.1| PREDICTED: CD44 antigen-like [Sus scrofa].
Length = 352
Score = 488 bits (1255), Expect = e-138
Identities = 244/291 (83%), Positives = 245/291 (84%)
Frame = +2
Query: 143 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 322
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
Sbjct: 1 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 60
Query: 323 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 502
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
Sbjct: 61 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 120
Query: 503 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 682
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
Sbjct: 121 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 180
Query: 683 NPSMAPEDDMXXXXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPY 862
NP+MAPEDDM IFHTHLPTTTHPDQEGPWVSSNPEDTPAT
Sbjct: 181 NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPATSHS--- 237
Query: 863 FDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
SG NTTSGPIRKSQIPEWLIILASLLA
Sbjct: 238 ---SGSQ----------------EGEANTTSGPIRKSQIPEWLIILASLLA 269
>ref|XP_003353953.1| PREDICTED: CD44 antigen-like [Sus scrofa].
Length = 443
Score = 459 bits (1180), Expect = e-129
Identities = 219/238 (92%), Positives = 220/238 (92%)
Frame = +2
Query: 143 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 322
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
Sbjct: 1 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 60
Query: 323 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 502
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
Sbjct: 61 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 120
Query: 503 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 682
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
Sbjct: 121 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 180
Query: 683 NPSMAPEDDMXXXXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQD 856
NP+MAPEDDM IFHTHLPTTTHPDQEGPWVSSNPEDTPAT D
Sbjct: 181 NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPATNRND 238
>ref|XP_003122916.1| PREDICTED: CD44 antigen-like isoform 3 [Sus scrofa].
Length = 507
Score = 458 bits (1178), Expect = e-129
Identities = 218/236 (92%), Positives = 220/236 (93%)
Frame = +2
Query: 143 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 322
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
Sbjct: 1 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 60
Query: 323 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 502
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
Sbjct: 61 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 120
Query: 503 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 682
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
Sbjct: 121 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 180
Query: 683 NPSMAPEDDMXXXXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKD 850
NP+MAPEDDM IFHTHLPTTTHPDQEGPWVSSNPEDTPAT +
Sbjct: 181 NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPATNE 236
Score = 80.1 bits (196), Expect = 2e-15
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = +2
Query: 815 SSNPEDTPATKDQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLI 994
S++ D +++DQDPYFDPSGRSFTT NTTSGPIRKSQIPEWLI
Sbjct: 358 STSNVDLSSSEDQDPYFDPSGRSFTTHGSESAGHSSGSQEGEANTTSGPIRKSQIPEWLI 417
Query: 995 ILASLLA 1015
ILASLLA
Sbjct: 418 ILASLLA 424
>ref|XP_003122915.1| PREDICTED: CD44 antigen-like isoform 2 [Sus scrofa].
Length = 756
Score = 457 bits (1176), Expect = e-129
Identities = 218/234 (93%), Positives = 219/234 (93%)
Frame = +2
Query: 143 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 322
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
Sbjct: 1 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 60
Query: 323 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 502
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
Sbjct: 61 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 120
Query: 503 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 682
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
Sbjct: 121 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 180
Query: 683 NPSMAPEDDMXXXXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 844
NP+MAPEDDM IFHTHLPTTTHPDQEGPWVSSNPEDTPAT
Sbjct: 181 NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 234
Score = 80.1 bits (196), Expect = 2e-15
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = +2
Query: 815 SSNPEDTPATKDQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLI 994
S++ D +++DQDPYFDPSGRSFTT NTTSGPIRKSQIPEWLI
Sbjct: 607 STSNVDLSSSEDQDPYFDPSGRSFTTHGSESAGHSSGSQEGEANTTSGPIRKSQIPEWLI 666
Query: 995 ILASLLA 1015
ILASLLA
Sbjct: 667 ILASLLA 673
>ref|XP_003122914.1| PREDICTED: CD44 antigen-like isoform 1 [Sus scrofa].
Length = 713
Score = 457 bits (1176), Expect = e-129
Identities = 218/234 (93%), Positives = 219/234 (93%)
Frame = +2
Query: 143 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 322
MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE
Sbjct: 1 MSPAHSLRRSDAMDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTE 60
Query: 323 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 502
AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA
Sbjct: 61 AADLCKAFNSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILA 120
Query: 503 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 682
SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI
Sbjct: 121 SNTSQYDTYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDI 180
Query: 683 NPSMAPEDDMXXXXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 844
NP+MAPEDDM IFHTHLPTTTHPDQEGPWVSSNPEDTPAT
Sbjct: 181 NPNMAPEDDMSSGSSSERSTSGGYSIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 234
Score = 80.1 bits (196), Expect = 2e-15
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = +2
Query: 815 SSNPEDTPATKDQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLI 994
S++ D +++DQDPYFDPSGRSFTT NTTSGPIRKSQIPEWLI
Sbjct: 564 STSNVDLSSSEDQDPYFDPSGRSFTTHGSESAGHSSGSQEGEANTTSGPIRKSQIPEWLI 623
Query: 995 ILASLLA 1015
ILASLLA
Sbjct: 624 ILASLLA 630
>ref|XP_003359767.1| PREDICTED: tumor necrosis factor-inducible gene 6 protein-like [Sus
scrofa].
Length = 277
Score = 63.5 bits (153), Expect = 2e-10
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Frame = +2
Query: 269 AGVFHVE-KNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGFI-DGHVVI 442
AGV+H E ++G+Y ++ EA +C+ L T Q+EAA IGF C G++ G V
Sbjct: 35 AGVYHREARSGKYKLTYAEAKAVCEYEGGRLATYKQLEAARKIGFHVCAAGWMAKGRVGY 94
Query: 443 PRIHPNAICAANNTGVY---ILASNTSQYDTYCFNASAPPEEDCTSV-TDLPNTFEGP 604
P + P C TG+ + + + ++D YC+N A ++C V TD F+ P
Sbjct: 95 PIVKPGPNCGFGKTGIIDYGVRLNRSERWDAYCYNLHA---KECGGVFTDPKRIFKSP 149
>ref|NP_001153079.1| tumor necrosis factor-inducible gene 6 protein [Sus scrofa].
Length = 277
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Frame = +2
Query: 269 AGVFHVE-KNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGFI-DGHVVI 442
AGV+ E ++G+Y ++ EA +C+ L T Q+EAA IGF C G++ G V
Sbjct: 35 AGVYLREARSGKYKLTYAEAKAVCEYEGGRLATYKQLEAARKIGFHVCAAGWMAKGRVGY 94
Query: 443 PRIHPNAICAANNTGVY---ILASNTSQYDTYCFNASAPPEEDCTSV-TDLPNTFEGP 604
P + P C TG+ + + + ++D YC+N P ++C V TD F+ P
Sbjct: 95 PIVKPGPNCGFGKTGIIDYGVRLNRSERWDAYCYN---PHAKECGGVFTDPKRIFKSP 149
>ref|XP_003353951.1| PREDICTED: CD44 antigen-like, partial [Sus scrofa].
Length = 117
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +2
Query: 944 NTTSGPIRKSQIPEWLIILASLLA 1015
NTTSGPIRKSQIPEWLIILASLLA
Sbjct: 11 NTTSGPIRKSQIPEWLIILASLLA 34
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,727,652
Number of extensions: 890941
Number of successful extensions: 3614
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3584
Number of HSP's successfully gapped: 13
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008359
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034240.1| CD44 antigen isoform c precursor [Mus muscul... 348 4e-96
Alignment gi|NP_001171258.1| CD44 antigen isoform f precursor [Mus muscul... 313 1e-85
Alignment gi|NP_001171257.1| CD44 antigen isoform e precursor [Mus muscul... 313 1e-85
Alignment gi|NP_001034239.1| CD44 antigen isoform b precursor [Mus muscul... 313 1e-85
Alignment gi|NP_001171256.1| CD44 antigen isoform d precursor [Mus muscul... 313 1e-85
Alignment gi|NP_033981.2| CD44 antigen isoform a precursor [Mus musculus]. 313 1e-85
Alignment gi|NP_444477.2| lymphatic vessel endothelial hyaluronic acid re... 72 5e-13
Alignment gi|NP_033424.1| tumor necrosis factor-inducible gene 6 protein ... 65 1e-10
Alignment gi|NP_619613.2| stabilin-1 precursor [Mus musculus]. 59 5e-09
>ref|NP_001034240.1| CD44 antigen isoform c precursor [Mus musculus].
Length = 365
Score = 348 bits (893), Expect = 4e-96
Identities = 186/286 (65%), Positives = 210/286 (73%), Gaps = 7/286 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLA----QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAF 346
MD FWW AWGLCL+QLSLA QIDLN+TCRYAGVFHVEKNGRYSIS+TEAADLC+AF
Sbjct: 1 MDKFWWHTAWGLCLLQLSLAHPHQQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAF 60
Query: 347 NSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYIL-ASNTSQYD 523
NSTLPTM QM+ AL+ GFETCRYGFI+G+VVIPRIHPNAICAAN+TGVYIL SNTS YD
Sbjct: 61 NSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAANHTGVYILVTSNTSHYD 120
Query: 524 TYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPE 703
TYCFNASAPPEEDCTSVTDLPN+F+GP+TITIVNRDGTRY+KKGEYRT+ EDI+ S +
Sbjct: 121 TYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDIDASNIID 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPTTTHP-DQEGPWVSSNPEDTPATKDQDPYFDPSGR 880
DD+ I HT+LPT DQ+ + T AT+D+D D G
Sbjct: 181 DDV-SSGSTIEKSTPESYILHTYLPTEQPTGDQDDSFFI---RSTLATRDRDSSKDSRGS 236
Query: 881 SFT-TXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
S T T TTSGP+R+ QIPEWLIILASLLA
Sbjct: 237 SRTVTHGSELAGHSSANQDSGVTTTSGPMRRPQIPEWLIILASLLA 282
>ref|NP_001171258.1| CD44 antigen isoform f precursor [Mus musculus].
Length = 464
Score = 313 bits (802), Expect = 1e-85
Identities = 154/206 (74%), Positives = 172/206 (83%), Gaps = 5/206 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLA----QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAF 346
MD FWW AWGLCL+QLSLA QIDLN+TCRYAGVFHVEKNGRYSIS+TEAADLC+AF
Sbjct: 1 MDKFWWHTAWGLCLLQLSLAHPHQQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAF 60
Query: 347 NSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYIL-ASNTSQYD 523
NSTLPTM QM+ AL+ GFETCRYGFI+G+VVIPRIHPNAICAAN+TGVYIL SNTS YD
Sbjct: 61 NSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAANHTGVYILVTSNTSHYD 120
Query: 524 TYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPE 703
TYCFNASAPPEEDCTSVTDLPN+F+GP+TITIVNRDGTRY+KKGEYRT+ EDI+ S +
Sbjct: 121 TYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDIDASNIID 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPT 781
DD+ I HT+LPT
Sbjct: 181 DDV-SSGSTIEKSTPESYILHTYLPT 205
>ref|NP_001171257.1| CD44 antigen isoform e precursor [Mus musculus].
Length = 498
Score = 313 bits (802), Expect = 1e-85
Identities = 154/206 (74%), Positives = 172/206 (83%), Gaps = 5/206 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLA----QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAF 346
MD FWW AWGLCL+QLSLA QIDLN+TCRYAGVFHVEKNGRYSIS+TEAADLC+AF
Sbjct: 1 MDKFWWHTAWGLCLLQLSLAHPHQQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAF 60
Query: 347 NSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYIL-ASNTSQYD 523
NSTLPTM QM+ AL+ GFETCRYGFI+G+VVIPRIHPNAICAAN+TGVYIL SNTS YD
Sbjct: 61 NSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAANHTGVYILVTSNTSHYD 120
Query: 524 TYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPE 703
TYCFNASAPPEEDCTSVTDLPN+F+GP+TITIVNRDGTRY+KKGEYRT+ EDI+ S +
Sbjct: 121 TYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDIDASNIID 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPT 781
DD+ I HT+LPT
Sbjct: 181 DDV-SSGSTIEKSTPESYILHTYLPT 205
>ref|NP_001034239.1| CD44 antigen isoform b precursor [Mus musculus].
Length = 580
Score = 313 bits (802), Expect = 1e-85
Identities = 154/206 (74%), Positives = 172/206 (83%), Gaps = 5/206 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLA----QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAF 346
MD FWW AWGLCL+QLSLA QIDLN+TCRYAGVFHVEKNGRYSIS+TEAADLC+AF
Sbjct: 1 MDKFWWHTAWGLCLLQLSLAHPHQQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAF 60
Query: 347 NSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYIL-ASNTSQYD 523
NSTLPTM QM+ AL+ GFETCRYGFI+G+VVIPRIHPNAICAAN+TGVYIL SNTS YD
Sbjct: 61 NSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAANHTGVYILVTSNTSHYD 120
Query: 524 TYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPE 703
TYCFNASAPPEEDCTSVTDLPN+F+GP+TITIVNRDGTRY+KKGEYRT+ EDI+ S +
Sbjct: 121 TYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDIDASNIID 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPT 781
DD+ I HT+LPT
Sbjct: 181 DDV-SSGSTIEKSTPESYILHTYLPT 205
>ref|NP_001171256.1| CD44 antigen isoform d precursor [Mus musculus].
Length = 657
Score = 313 bits (802), Expect = 1e-85
Identities = 154/206 (74%), Positives = 172/206 (83%), Gaps = 5/206 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLA----QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAF 346
MD FWW AWGLCL+QLSLA QIDLN+TCRYAGVFHVEKNGRYSIS+TEAADLC+AF
Sbjct: 1 MDKFWWHTAWGLCLLQLSLAHPHQQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAF 60
Query: 347 NSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYIL-ASNTSQYD 523
NSTLPTM QM+ AL+ GFETCRYGFI+G+VVIPRIHPNAICAAN+TGVYIL SNTS YD
Sbjct: 61 NSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAANHTGVYILVTSNTSHYD 120
Query: 524 TYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPE 703
TYCFNASAPPEEDCTSVTDLPN+F+GP+TITIVNRDGTRY+KKGEYRT+ EDI+ S +
Sbjct: 121 TYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDIDASNIID 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPT 781
DD+ I HT+LPT
Sbjct: 181 DDV-SSGSTIEKSTPESYILHTYLPT 205
>ref|NP_033981.2| CD44 antigen isoform a precursor [Mus musculus].
Length = 780
Score = 313 bits (802), Expect = 1e-85
Identities = 154/206 (74%), Positives = 172/206 (83%), Gaps = 5/206 (2%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLA----QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAF 346
MD FWW AWGLCL+QLSLA QIDLN+TCRYAGVFHVEKNGRYSIS+TEAADLC+AF
Sbjct: 1 MDKFWWHTAWGLCLLQLSLAHPHQQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAF 60
Query: 347 NSTLPTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYIL-ASNTSQYD 523
NSTLPTM QM+ AL+ GFETCRYGFI+G+VVIPRIHPNAICAAN+TGVYIL SNTS YD
Sbjct: 61 NSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAANHTGVYILVTSNTSHYD 120
Query: 524 TYCFNASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPE 703
TYCFNASAPPEEDCTSVTDLPN+F+GP+TITIVNRDGTRY+KKGEYRT+ EDI+ S +
Sbjct: 121 TYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDIDASNIID 180
Query: 704 DDMXXXXXXXXXXXXXXXIFHTHLPT 781
DD+ I HT+LPT
Sbjct: 181 DDV-SSGSTIEKSTPESYILHTYLPT 205
>ref|NP_444477.2| lymphatic vessel endothelial hyaluronic acid receptor 1 precursor
[Mus musculus].
Length = 318
Score = 72.4 bits (176), Expect = 5e-13
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Frame = +2
Query: 245 DLNI-TCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGF 421
DL+I TCR GV V +N ++ TEA + CK TL + Q+E+A GFETC YG+
Sbjct: 29 DLSISTCRIMGVALVGRNKNPQMNFTEANEACKMLGLTLASRDQVESAQKSGFETCSYGW 88
Query: 422 I-DGHVVIPRIHPNAICAANNTGVYILASNTSQ-YDTYCFNASAPPEEDCTSVTDLPNTF 595
+ + VIPRI N C N GV I + +SQ + YC N+S C + ++ TF
Sbjct: 89 VGEQFSVIPRIFSNPRCGKNGKGVLIWNAPSSQKFKAYCHNSSDTWVNSC--IPEIVTTF 146
>ref|NP_033424.1| tumor necrosis factor-inducible gene 6 protein precursor [Mus
musculus].
Length = 275
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Frame = +2
Query: 269 AGVFHVE-KNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGFI-DGHVVI 442
AGV+H E + GRY ++ EA +C+ L T Q+EAA IGF C G++ G V
Sbjct: 35 AGVYHREARAGRYKLTYAEAKAVCEFEGGRLATYKQLEAARKIGFHVCAAGWMAKGRVGY 94
Query: 443 PRIHPNAICAANNTGVY---ILASNTSQYDTYCFNASAPPEEDCTSV-TDLPNTFEGP 604
P + P C TG+ I + + ++D YC+N P ++C V TD F+ P
Sbjct: 95 PIVKPGPNCGFGKTGIIDYGIRLNRSERWDAYCYN---PHAKECGGVFTDPKRIFKSP 149
>ref|NP_619613.2| stabilin-1 precursor [Mus musculus].
Length = 2571
Score = 59.3 bits (142), Expect = 5e-09
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Frame = +2
Query: 245 DLNITCRYAGVFHVEK-NGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGF 421
DL+ + AGVFH++ +G Y ++ +EA + C+ + L ++ Q+ AA +GF C G+
Sbjct: 2199 DLHFQEKQAGVFHIQATSGPYGLTFSEAKEACEGQGAVLASLPQLSAAQQLGFHVCFVGW 2258
Query: 422 I-DGHVVIPRIHPNAICAANNTGVYILA--SNTSQ-YDTYCF 535
+ +G P + P A C N GV L N S+ +D YC+
Sbjct: 2259 LANGSAAHPVVTPAADCGNNRVGVVSLGVRKNLSELWDAYCY 2300
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,233,122
Number of extensions: 1153098
Number of successful extensions: 4476
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4442
Number of HSP's successfully gapped: 9
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008359
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001391.1| CD44 antigen isoform 4 precursor [Homo sapie... 406 e-113
Alignment gi|NP_001189486.1| CD44 antigen isoform 8 precursor [Homo sapie... 406 e-113
Alignment gi|NP_001189485.1| CD44 antigen isoform 7 precursor [Homo sapie... 382 e-106
Alignment gi|NP_001189484.1| CD44 antigen isoform 6 precursor [Homo sapie... 358 6e-99
Alignment gi|NP_001001390.1| CD44 antigen isoform 3 precursor [Homo sapie... 356 2e-98
Alignment gi|NP_001001389.1| CD44 antigen isoform 2 precursor [Homo sapie... 356 2e-98
Alignment gi|NP_000601.3| CD44 antigen isoform 1 precursor [Homo sapiens]. 356 2e-98
Alignment gi|NP_001001392.1| CD44 antigen isoform 5 precursor [Homo sapie... 150 1e-36
Alignment gi|NP_006682.2| lymphatic vessel endothelial hyaluronic acid re... 83 4e-16
Alignment gi|NP_009046.2| tumor necrosis factor-inducible gene 6 protein ... 65 8e-11
>ref|NP_001001391.1| CD44 antigen isoform 4 precursor [Homo sapiens].
Length = 361
Score = 406 bits (1044), Expect = e-113
Identities = 200/279 (71%), Positives = 217/279 (77%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPYFDPSGRSFTTXX 898
IF+T PD++ PW++ + + PAT+DQD F PSG S TT
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDT-FHPSGGSHTTHG 239
Query: 899 XXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
NTTSGPIR QIPEWLIILASLLA
Sbjct: 240 SESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 278
>ref|NP_001189486.1| CD44 antigen isoform 8 precursor [Homo sapiens].
Length = 294
Score = 406 bits (1044), Expect = e-113
Identities = 200/279 (71%), Positives = 217/279 (77%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPYFDPSGRSFTTXX 898
IF+T PD++ PW++ + + PAT+DQD F PSG S TT
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDT-FHPSGGSHTTHG 239
Query: 899 XXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
NTTSGPIR QIPEWLIILASLLA
Sbjct: 240 SESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 278
>ref|NP_001189485.1| CD44 antigen isoform 7 precursor [Homo sapiens].
Length = 340
Score = 382 bits (982), Expect = e-106
Identities = 190/279 (68%), Positives = 207/279 (74%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQDPYFDPSGRSFTTXX 898
IF+T PD++ PW++ + + PAT+
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRHS--------------- 225
Query: 899 XXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
NTTSGPIR QIPEWLIILASLLA
Sbjct: 226 -------HGSQEGGANTTSGPIRTPQIPEWLIILASLLA 257
>ref|NP_001189484.1| CD44 antigen isoform 6 precursor [Homo sapiens].
Length = 429
Score = 358 bits (918), Expect = 6e-99
Identities = 169/226 (74%), Positives = 185/226 (81%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPATKDQD 856
IF+T PD++ PW++ + + PAT D
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATNRND 226
Score = 53.9 bits (128), Expect = 2e-07
Identities = 32/56 (57%), Positives = 32/56 (57%)
Frame = +2
Query: 848 DQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
DQD F PSG S TT NTTSGPIR QIPEWLIILASLLA
Sbjct: 292 DQDT-FHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 346
>ref|NP_001001390.1| CD44 antigen isoform 3 precursor [Homo sapiens].
Length = 493
Score = 356 bits (914), Expect = 2e-98
Identities = 168/222 (75%), Positives = 184/222 (82%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 844
IF+T PD++ PW++ + + PAT
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222
Score = 53.9 bits (128), Expect = 2e-07
Identities = 32/56 (57%), Positives = 32/56 (57%)
Frame = +2
Query: 848 DQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
DQD F PSG S TT NTTSGPIR QIPEWLIILASLLA
Sbjct: 356 DQDT-FHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 410
>ref|NP_001001389.1| CD44 antigen isoform 2 precursor [Homo sapiens].
Length = 699
Score = 356 bits (914), Expect = 2e-98
Identities = 168/222 (75%), Positives = 184/222 (82%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 844
IF+T PD++ PW++ + + PAT
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222
Score = 53.9 bits (128), Expect = 2e-07
Identities = 32/56 (57%), Positives = 32/56 (57%)
Frame = +2
Query: 848 DQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
DQD F PSG S TT NTTSGPIR QIPEWLIILASLLA
Sbjct: 562 DQDT-FHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 616
>ref|NP_000601.3| CD44 antigen isoform 1 precursor [Homo sapiens].
Length = 742
Score = 356 bits (914), Expect = 2e-98
Identities = 168/222 (75%), Positives = 184/222 (82%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETCRYGFIDGHVVIPRIHPNAICAANNTGVYILASNTSQYDTYCFN 538
PTMAQME AL+IGFETCRYGFI+GHVVIPRIHPN+ICAANNTGVYIL SNTSQYDTYCFN
Sbjct: 61 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
Query: 539 ASAPPEEDCTSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAPEDDMXX 718
ASAPPEEDCTSVTDLPN F+GPITITIVNRDGTRY +KGEYRTNPEDI PS +DD+
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
Query: 719 XXXXXXXXXXXXXIFHTHLPTTTHPDQEGPWVSSNPEDTPAT 844
IF+T PD++ PW++ + + PAT
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222
Score = 53.9 bits (128), Expect = 2e-07
Identities = 32/56 (57%), Positives = 32/56 (57%)
Frame = +2
Query: 848 DQDPYFDPSGRSFTTXXXXXXXXXXXXXXXXXNTTSGPIRKSQIPEWLIILASLLA 1015
DQD F PSG S TT NTTSGPIR QIPEWLIILASLLA
Sbjct: 605 DQDT-FHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 659
>ref|NP_001001392.1| CD44 antigen isoform 5 precursor [Homo sapiens].
Length = 139
Score = 150 bits (380), Expect = 1e-36
Identities = 70/77 (90%), Positives = 73/77 (94%)
Frame = +2
Query: 179 MDTFWWRAAWGLCLVQLSLAQIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTL 358
MD FWW AAWGLCLV LSLAQIDLNITCR+AGVFHVEKNGRYSIS+TEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 359 PTMAQMEAALNIGFETC 409
PTMAQME AL+IGFETC
Sbjct: 61 PTMAQMEKALSIGFETC 77
>ref|NP_006682.2| lymphatic vessel endothelial hyaluronic acid receptor 1 [Homo
sapiens].
Length = 322
Score = 83.2 bits (204), Expect = 4e-16
Identities = 58/170 (34%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Frame = +2
Query: 218 LVQLSLA--QIDLNITCRYAGVFHVEKNGRYSISKTEAADLCKAFNSTLPTMAQMEAALN 391
LVQ SL ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL
Sbjct: 20 LVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALK 79
Query: 392 IGFETCRYGFI-DGHVVIPRIHPNAICAANNTGVYILASNTS-QYDTYCFNASAPPEEDC 565
FETC YG++ DG VVI RI PN C N GV I S Q+ YC+N+S C
Sbjct: 80 ASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSRQFAAYCYNSSDTWTNSC 139
Query: 566 -----TSVTDLPNTFEGPITITIVNRDGTRYTKKGEYRTNPEDINPSMAP 700
T+ + NT T + D T Y+ Y T P AP
Sbjct: 140 IPEIITTKDPIFNTQTATQTTEFIVSDST-YSVASPYSTIPAPTTTPPAP 188
>ref|NP_009046.2| tumor necrosis factor-inducible gene 6 protein precursor [Homo
sapiens].
Length = 277
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Frame = +2
Query: 263 RYAGVFHVE-KNGRYSISKTEAADLCKAFNSTLPTMAQMEAALNIGFETCRYGFI-DGHV 436
R AGV+H E ++G+Y ++ EA +C+ L T Q+EAA IGF C G++ G V
Sbjct: 33 RAAGVYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRV 92
Query: 437 VIPRIHPNAICAANNTGVY---ILASNTSQYDTYCFNASAPPEEDCTSV-TDLPNTFEGP 604
P + P C TG+ I + + ++D YC+N P ++C V TD F+ P
Sbjct: 93 GYPIVKPGPNCGFGKTGIIDYGIRLNRSERWDAYCYN---PHAKECGGVFTDPKQIFKSP 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,386,155
Number of extensions: 1388040
Number of successful extensions: 5245
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5226
Number of HSP's successfully gapped: 15
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008359
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 486 e-134
>Sscrofa_Chr02
|| Length = 162569375
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 gtcactcactcaaccctcgaataaaaactgcacccaacttcccaggcgccctcactgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28249956 gtcactcactcaaccctcgaataaaaactgcacccaacttcccaggcgccctcactgcca 28249897
Query: 61 gccggaccccagcctcggacaggttctggcgccctgctcgtccagtgctctgccggcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28249896 gccggaccccagcctcggacaggttctggcgccctgctcgtccagtgctctgccggcccc 28249837
Query: 121 cgcccagcgccccggcccttccatgtcacccgctcactctctccgtcgttccgacgccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28249836 cgcccagcgccccggcccttccatgtcacccgctcactctctccgtcgttccgacgccat 28249777
Query: 181 ggacaccttttggtggcgcgcagcttggggactctgcctcgtgcagctgagcctggcgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28249776 ggacaccttttggtggcgcgcagcttggggactctgcctcgtgcagctgagcctggcgca 28249717
Query: 241 gatcg 245
|||||
Sbjct: 28249716 gatcg 28249712
Score = 450 bits (227), Expect = e-124
Identities = 230/231 (99%)
Strand = Plus / Minus
Query: 615 ctattgttaaccgcgatggcacccgctacaccaagaaaggtgaatacaggaccaaccccg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28201782 ctattgttaaccgcgatggcacccgctacaccaagaaaggtgaatacaggaccaaccccg 28201723
Query: 675 aggacatcaaccccagcatggctccggaggatgatatgagcagtggatcatccagtgaaa 734
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28201722 aggacatcaaccccaacatggctccggaggatgatatgagcagtggatcatccagtgaaa 28201663
Query: 735 gaagcacttccgggggttacagcatcttccacacccaccttccgactactacgcacccag 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28201662 gaagcacttccgggggttacagcatcttccacacccaccttccgactactacgcacccag 28201603
Query: 795 accaagaaggtccttgggtctctagcaacccggaggataccccagctacca 845
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28201602 accaagaaggtccttgggtctctagcaacccggaggataccccagctacca 28201552
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 245 gatctgaatataacctgccgatacgcaggtgtattccatgtggagaagaatggtcgctac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28213566 gatctgaatataacctgccgatacgcaggtgtattccatgtggagaagaatggtcgctac 28213507
Query: 305 agcatctcgaagactgaggccgctgacctctgcaaagccttcaacagcacgctgcccacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28213506 agcatctcgaagactgaggccgctgacctctgcaaagccttcaacagcacgctgcccacc 28213447
Query: 365 atggcccagatggaggcggccctgaacatagggtttgagacttgcaggta 414
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28213446 atggcccagatggaggcggccctgaacatagggtttgagacttgcaggta 28213397
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 406 ttgcaggtatgggttcatcgatgggcacgtggtgatcccccggatccaccccaatgccat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28209918 ttgcaggtatgggttcatcgatgggcacgtggtgatcccccggatccaccccaatgccat 28209859
Query: 466 ctgtgctgcgaacaacacaggggtgtacatcctcgcatccaatacctcccagtatgacac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28209858 ctgtgctgcgaacaacacaggggtgtacatcctcgcatccaatacctcccagtatgacac 28209799
Query: 526 gtattgcttcaatgcatcag 545
||||||||||||||||||||
Sbjct: 28209798 gtattgcttcaatgcatcag 28209779
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 911 ggccactcaagtgggagtcaagaaggtgaggcaaacacaacctctggtcctatacggaaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28172898 ggccactcaagtgggagtcaagaaggtgaggcaaacacaacctctggtcctatacggaaa 28172839
Query: 971 tctcaaattccag 983
|||||||||||||
Sbjct: 28172838 tctcaaattccag 28172826
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 544 agctccacctgaagaagattgtacatcagtcacagacctgcctaataccttcgaaggacc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28204532 agctccacctgaagaagattgtacatcagtcacagacctgcctaataccttcgaaggacc 28204473
Query: 604 aattaccataa 614
|||||||||||
Sbjct: 28204472 aattaccataa 28204462
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 846 aagaccaagacccctactttgaccccagcgggaggtcctttactactcacggatctgaat 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28177404 aagaccaagacccctactttgaccccagcgggaggtcctttactactcacggatctgaat 28177345
Query: 906 cagctgg 912
|||||||
Sbjct: 28177344 cagctgg 28177338
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 980 ccagaatggctgatcatcctggcgtcccttctggccct 1017
||||||||||||||||||||||||||||||||||||||
Sbjct: 28170686 ccagaatggctgatcatcctggcgtcccttctggccct 28170649
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,849,146
Number of extensions: 88
Number of successful extensions: 88
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 8
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)