Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008362
(1208 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092333.1| C-4 methylsterol oxidase [Bos taurus]. 570 e-163
Alignment gi|NP_001068711.1| cholesterol 25-hydroxylase [Bos taurus]. 109 4e-24
Alignment gi|NP_001030433.1| sterol-C5-desaturase (ERG3 delta-5-desaturas... 50 4e-06
>ref|NP_001092333.1| C-4 methylsterol oxidase [Bos taurus].
Length = 293
Score = 570 bits (1470), Expect = e-163
Identities = 259/282 (91%), Positives = 266/282 (94%)
Frame = +2
Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
MATNESIS+FSSASLAVEYVDSLLP+NPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHE
Sbjct: 1 MATNESISVFSSASLAVEYVDSLLPDNPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEV 60
Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61 LYFLFCLPGFLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120
Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180
Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
GMEAEYAHPLET+ILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPL+L
Sbjct: 181 GMEAEYAHPLETIILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLNL 240
Query: 908 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTD+Q+NAYN
Sbjct: 241 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQFNAYN 282
>ref|NP_001068711.1| cholesterol 25-hydroxylase [Bos taurus].
Length = 270
Score = 109 bits (273), Expect = 4e-24
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 4/204 (1%)
Frame = +2
Query: 410 IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
+P +++YKI D + C L+ H FP+ ++ +P + P
Sbjct: 65 VPTLRRYKIHPDFSPSARQLLPCLGQTLYQHVVFVFPMTL-LHWAVSPALLPAE---APE 120
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLET 763
+ L++ C ++ DT +F+ LLHHK +Y+ HK+HH+ +PF + +Y E
Sbjct: 121 LFQLVSHVALCLLLFDT-EFFVWHLLHHKVPWLYRTFHKMHHQNSSPFALSTQYMSVGEL 179
Query: 764 LILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRHH 937
LG + ++LL H + + V + +++ HSGYD P + L+PF + G HH
Sbjct: 180 FSLGVFDMVNVLLLQCHPLTSLTFHVVNIWLSVEDHSGYDFPWSTHRLVPFGWFGGVAHH 239
Query: 938 DFHHMNFIGNYASTFTWWDRIFGT 1009
D HH F N+A FT WD+I GT
Sbjct: 240 DLHHSQFNCNFAPYFTHWDKILGT 263
>ref|NP_001030433.1| sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, fungal)-like
[Bos taurus].
Length = 195
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
W+ L+A D Y++HR LHHK +YK +HK HH ++ P + HPL+ +
Sbjct: 116 WFQLVASVLSFLFFTDMLIYWIHRGLHHKLVYKRLHKPHHIWKIPTPFASHAFHPLDGFL 175
Query: 770 LGTGFFI 790
+ I
Sbjct: 176 QSLPYHI 182
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,173,590
Number of extensions: 1095812
Number of successful extensions: 2736
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2731
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008362
(1208 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532714.1| PREDICTED: similar to C-4 methylsterol oxidase ... 565 e-161
Alignment gi|XP_867951.1| PREDICTED: similar to C-4 methylsterol oxidase ... 451 e-127
Alignment gi|XP_546281.2| PREDICTED: similar to CG1998-PA [Canis familiar... 107 2e-23
Alignment gi|XP_543596.1| PREDICTED: similar to cholesterol 25-hydroxylas... 98 1e-20
Alignment gi|XP_853004.1| PREDICTED: similar to sterol-C5-desaturase-like... 84 2e-16
>ref|XP_532714.1| PREDICTED: similar to C-4 methylsterol oxidase (Methylsterol
monooxygenase) isoform 1 [Canis familiaris].
Length = 293
Score = 565 bits (1456), Expect = e-161
Identities = 257/282 (91%), Positives = 264/282 (93%)
Frame = +2
Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHE
Sbjct: 1 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEV 60
Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
IP+MKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61 LYFLFCLPGFLFQFIPFMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120
Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
EYF+IPYDWE MPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121 EYFNIPYDWERMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180
Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVT+RLIETIDVHSGYDIPLNPL+L
Sbjct: 181 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTIRLIETIDVHSGYDIPLNPLNL 240
Query: 908 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTD+Q+ AYN
Sbjct: 241 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQFTAYN 282
>ref|XP_867951.1| PREDICTED: similar to C-4 methylsterol oxidase (Methylsterol
monooxygenase) isoform 2 [Canis familiaris].
Length = 266
Score = 451 bits (1159), Expect = e-127
Identities = 207/228 (90%), Positives = 211/228 (92%)
Frame = +2
Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHE
Sbjct: 1 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEV 60
Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
IP+MKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61 LYFLFCLPGFLFQFIPFMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120
Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
EYF+IPYDWE MPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121 EYFNIPYDWERMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180
Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVH 871
GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVT+RLIETIDVH
Sbjct: 181 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTIRLIETIDVH 228
>ref|XP_546281.2| PREDICTED: similar to CG1998-PA [Canis familiaris].
Length = 590
Score = 107 bits (268), Expect = 2e-23
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Frame = +2
Query: 416 YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
++ +Y+IQ K++P E + + +LFN + I P++ Y + + P E +P
Sbjct: 366 FISRYRIQVGKNEPVDAEKLRRSIRTVLFNQYMISLPMVVLLYPVLKLWGNPCRRE-LPT 424
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
++ L +IE+ Y+ HRLLHH YK IHK HHE+ AP G+ + YAHP+E ++
Sbjct: 425 FHWFLLELTVFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWTAPIGVISFYAHPIEHVV 484
Query: 770 LGT-GFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
T +G +L+ H+ + W ++ LI T H GY +PF HD+H
Sbjct: 485 SNTLPVMVGPILMGSHLSSITMWFSLALIITTISHCGYH--------LPFLPSPEFHDYH 536
Query: 947 HMNFIGNYASTFTWWDRIFGTDAQY 1021
H+ F Y D + GTD +
Sbjct: 537 HLKFNQCY-GVLGVLDHLHGTDTLF 560
>ref|XP_543596.1| PREDICTED: similar to cholesterol 25-hydroxylase [Canis familiaris].
Length = 270
Score = 98.2 bits (243), Expect = 1e-20
Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Frame = +2
Query: 419 MKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFP---LICGTYYFTEYFSIPYDW-ETMP 586
+++YK+ D + C + H + P L C P W P
Sbjct: 68 LRRYKVHPDCGPSARQLLGCLGRTVCQHVALLLPASLLHCARG--------PAPWPREAP 119
Query: 587 RWYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLE 760
L GC ++ D F +LHH+ +Y+ HK+HH+ A F + +Y E
Sbjct: 120 ELLQLARHVLGCLLLFDA-EVFAWHVLHHRVPWLYRTFHKLHHQHAASFALATQYMGAWE 178
Query: 761 TLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRH 934
L LG + ++LL H + + A+ + + +++ HSGYD P + L+PF Y G H
Sbjct: 179 LLSLGFFHVLNVVLLQCHPLSVLAFHLLNIWLSVEDHSGYDFPWSTHRLVPFGWYGGVAH 238
Query: 935 HDFHHMNFIGNYASTFTWWDRIFGT 1009
HD HH F N+A FT WDRI GT
Sbjct: 239 HDLHHSQFNCNFAPYFTHWDRILGT 263
>ref|XP_853004.1| PREDICTED: similar to sterol-C5-desaturase-like [Canis familiaris].
Length = 299
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/140 (34%), Positives = 69/140 (49%)
Frame = +2
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
W+ L+ D Y++HR LHH+ +YK IHK HH ++ P + HP++ +
Sbjct: 116 WFRLIISILSFLFFTDMLIYWIHRGLHHRLVYKRIHKPHHLWKIPTPFASHAFHPVDGFL 175
Query: 770 LGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHH 949
+ I + H ++ + + I TI +H G D + P L PF GS HH HH
Sbjct: 176 QSLPYHIYPFIFPLHKVVYLSLYILVNIWTISIHDG-DFRV-PQILRPFINGSAHHTDHH 233
Query: 950 MNFIGNYASTFTWWDRIFGT 1009
M F NY FT WDRI G+
Sbjct: 234 MFFDYNYGQYFTLWDRIGGS 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,939,648
Number of extensions: 1120908
Number of successful extensions: 2873
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2868
Number of HSP's successfully gapped: 5
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008362
(1208 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998917.1| C-4 methylsterol oxidase [Sus scrofa]. 578 e-165
Alignment gi|XP_001928655.2| PREDICTED: cholesterol 25-hydroxylase-like [... 110 1e-24
Alignment gi|XP_003134170.1| PREDICTED: uncharacterized protein C5orf4 ho... 103 2e-22
Alignment gi|XP_003134169.1| PREDICTED: uncharacterized protein C5orf4 ho... 103 2e-22
Alignment gi|XP_003361443.1| PREDICTED: uncharacterized protein C5orf4 ho... 101 7e-22
Alignment gi|XP_003129992.1| PREDICTED: lathosterol oxidase-like [Sus scr... 87 1e-17
>ref|NP_998917.1| C-4 methylsterol oxidase [Sus scrofa].
Length = 293
Score = 578 bits (1489), Expect = e-165
Identities = 265/282 (93%), Positives = 267/282 (94%)
Frame = +2
Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
MATN+SISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA
Sbjct: 1 MATNQSISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 60
Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT
Sbjct: 61 LYFFFCLPGFLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 120
Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
EYFSIPYDWETMPRWY+ LARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF
Sbjct: 121 EYFSIPYDWETMPRWYIALARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 180
Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL
Sbjct: 181 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 240
Query: 908 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN
Sbjct: 241 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 282
>ref|XP_001928655.2| PREDICTED: cholesterol 25-hydroxylase-like [Sus scrofa].
Length = 311
Score = 110 bits (276), Expect = 1e-24
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 5/205 (2%)
Frame = +2
Query: 410 IPYMKKYKIQKD-KPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMP 586
+P +++YKI D P W+ C + L+ H FP+ + + P P
Sbjct: 106 VPALRRYKIHPDFSPSVWQ-LLPCLGLTLYQHVVFVFPMTLLHWAASPVLLPP----EAP 160
Query: 587 RWYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLE 760
L+ C ++ DT +F+ +LHHK +Y+ HK+HH+ + F + +Y E
Sbjct: 161 ELLQLVRHIVLCLLLFDT-EFFIWHVLHHKVPWLYRTFHKMHHQNSSSFALATQYMSVGE 219
Query: 761 TLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRH 934
L LG + IMLL H + + + + + +++ HSGYD P + L+PF Y G H
Sbjct: 220 LLSLGVFDMVNIMLLRCHPLTVLIFHVINIWLSVEDHSGYDFPWSTHRLVPFGWYGGVTH 279
Query: 935 HDFHHMNFIGNYASTFTWWDRIFGT 1009
HD HH F N+A FT WD+I GT
Sbjct: 280 HDLHHSQFNCNFAPYFTHWDKILGT 304
>ref|XP_003134170.1| PREDICTED: uncharacterized protein C5orf4 homolog isoform 2 [Sus
scrofa].
Length = 310
Score = 103 bits (257), Expect = 2e-22
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 3/205 (1%)
Frame = +2
Query: 416 YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
++ +Y+IQ K+ P K + +LFN F I PL+ Y + + P E +P
Sbjct: 86 FISRYRIQVGKNDPVDPVKLRKAIQTVLFNQFVISLPLLVFLYPILKLWGDPCRQE-LPT 144
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
++ L +IE+ Y+ HRLLHH +YK IHK HHE+ AP G+ + YAHP+E +
Sbjct: 145 FHWFLLELAIFTLIEEVLFYYSHRLLHHPTLYKKIHKKHHEWTAPIGVISLYAHPVEHVA 204
Query: 770 LG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
+G +++ H+ + W ++ I TI H GY +PF HD+H
Sbjct: 205 SNMLPAMVGPIIMGSHLSSITVWFSLAFIITIISHCGYH--------LPFLPSPEFHDYH 256
Query: 947 HMNFIGNYASTFTWWDRIFGTDAQY 1021
H+ F Y D + GTD +
Sbjct: 257 HLKFNQCY-GVLGVLDHLHGTDTVF 280
>ref|XP_003134169.1| PREDICTED: uncharacterized protein C5orf4 homolog isoform 1 [Sus
scrofa].
Length = 333
Score = 103 bits (257), Expect = 2e-22
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 3/205 (1%)
Frame = +2
Query: 416 YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
++ +Y+IQ K+ P K + +LFN F I PL+ Y + + P E +P
Sbjct: 109 FISRYRIQVGKNDPVDPVKLRKAIQTVLFNQFVISLPLLVFLYPILKLWGDPCRQE-LPT 167
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
++ L +IE+ Y+ HRLLHH +YK IHK HHE+ AP G+ + YAHP+E +
Sbjct: 168 FHWFLLELAIFTLIEEVLFYYSHRLLHHPTLYKKIHKKHHEWTAPIGVISLYAHPVEHVA 227
Query: 770 LG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
+G +++ H+ + W ++ I TI H GY +PF HD+H
Sbjct: 228 SNMLPAMVGPIIMGSHLSSITVWFSLAFIITIISHCGYH--------LPFLPSPEFHDYH 279
Query: 947 HMNFIGNYASTFTWWDRIFGTDAQY 1021
H+ F Y D + GTD +
Sbjct: 280 HLKFNQCY-GVLGVLDHLHGTDTVF 303
>ref|XP_003361443.1| PREDICTED: uncharacterized protein C5orf4 homolog, partial [Sus
scrofa].
Length = 251
Score = 101 bits (252), Expect = 7e-22
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +2
Query: 416 YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPY-DWETMP 586
++ +Y+IQ K+ P K + +LFN F I PL+ Y + + P
Sbjct: 27 FISRYRIQVGKNDPVDPVKLRKAIQTVLFNQFVISLPLLVFLYPILKLWGDPCRXXXXXX 86
Query: 587 RWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETL 766
W++L F +IE+ Y+ HRLLHH +YK IHK HHE+ AP G+ + YAHP+E +
Sbjct: 87 XWFLLELAIF--TLIEEVLFYYSHRLLHHPTLYKKIHKKHHEWTAPIGVISLYAHPVEHV 144
Query: 767 ILG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDF 943
+G +++ H+ + W ++ I TI H GY +PF HD+
Sbjct: 145 ASNMLPAMVGPIIMGSHLSSITVWFSLAFIITIISHCGYH--------LPFLPSPEFHDY 196
Query: 944 HHMNFIGNYASTFTWWDRIFGTDAQY 1021
HH+ F Y D + GTD +
Sbjct: 197 HHLKFNQCY-GVLGVLDHLHGTDTVF 221
>ref|XP_003129992.1| PREDICTED: lathosterol oxidase-like [Sus scrofa].
Length = 299
Score = 87.4 bits (215), Expect = 1e-17
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Frame = +2
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
W+ LLA D Y++HR LHH+ +YK +HK HH ++ P + HPL+ +
Sbjct: 116 WFRLLASVLSFLFFTDMLIYWIHRGLHHRLLYKRLHKPHHIWKIPTPFASHAFHPLDGFL 175
Query: 770 LGTGFFIGIMLLCDH-VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
+ I + H V+ L ++ V I TI +H G D + P L PF GS HH H
Sbjct: 176 QSLPYHIYPFVFPLHKVVYLGLYILVN-IWTISIHDG-DFRV-PQSLRPFINGSAHHTDH 232
Query: 947 HMNFIGNYASTFTWWDRIFGT 1009
HM F NY FT WDRI G+
Sbjct: 233 HMLFDYNYGQYFTLWDRIGGS 253
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,334,799
Number of extensions: 697967
Number of successful extensions: 1746
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008362
(1208 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079712.1| C-4 methylsterol oxidase [Mus musculus]. 527 e-150
Alignment gi|NP_034020.1| cholesterol 25-hydroxylase [Mus musculus]. 104 1e-22
Alignment gi|NP_766357.1| lathosterol oxidase [Mus musculus]. 82 8e-16
>ref|NP_079712.1| C-4 methylsterol oxidase [Mus musculus].
Length = 293
Score = 527 bits (1357), Expect = e-150
Identities = 235/281 (83%), Positives = 256/281 (91%)
Frame = +2
Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
MATN+S+ +FSSASLAVEYVDSLLPENPLQEPFKNAW YML+NYTKFQIATWGSLIVHEA
Sbjct: 1 MATNKSVGVFSSASLAVEYVDSLLPENPLQEPFKNAWVYMLDNYTKFQIATWGSLIVHEA 60
Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
IPYM+KYKIQKDKPET+E QWKC K +LFNHF IQ PLICGTYYFT
Sbjct: 61 IYFLFSLPGFLFQFIPYMRKYKIQKDKPETFEGQWKCLKKILFNHFFIQLPLICGTYYFT 120
Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
E+F+IPYDWE MPRWY+ LARC GCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121 EFFNIPYDWERMPRWYLTLARCLGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180
Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
G+EAEYAHPLETLILGTGFFIGI+LLCDHVILLWAWVT+RL+ETIDVHSGYDIPLNPL+L
Sbjct: 181 GIEAEYAHPLETLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNL 240
Query: 908 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAY 1030
+PFY G+RHHDFHHMNFIGNYASTFTWWD++FGTDAQY+AY
Sbjct: 241 VPFYTGARHHDFHHMNFIGNYASTFTWWDKLFGTDAQYHAY 281
>ref|NP_034020.1| cholesterol 25-hydroxylase [Mus musculus].
Length = 298
Score = 104 bits (260), Expect = 1e-22
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
Frame = +2
Query: 410 IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
+P +++YKI D + + C + L+ H FP+ ++ +P + P
Sbjct: 65 VPILRRYKIHPDFSPSVKQLLPCLGLTLYQHLVFVFPVTL-LHWVRSPALLPQE---APE 120
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLET 763
LL+ C ++ DT F LLHHK +Y+ HK+HH+ + F + +Y E
Sbjct: 121 LVQLLSHVLICLLLFDT-EIFAWHLLHHKVPWLYRTFHKVHHQNSSSFALATQYMSFWEL 179
Query: 764 LILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRHH 937
L L + + +L H + ++ + + + +++ HSGYD P + L+PF Y G HH
Sbjct: 180 LSLTFFDVLNVAVLRCHPLTIFTFHVINIWLSVEDHSGYDFPWSTHRLVPFGWYGGVAHH 239
Query: 938 DFHHMNFIGNYASTFTWWDRIFGT 1009
D HH F N+A FT WD++ GT
Sbjct: 240 DMHHSQFNCNFAPYFTHWDKMLGT 263
>ref|NP_766357.1| lathosterol oxidase [Mus musculus].
Length = 299
Score = 82.0 bits (201), Expect = 8e-16
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Frame = +2
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
W L+ D Y++HR LHH+ +YK IHK HH ++ P + HP++ +
Sbjct: 116 WIHLMVSVVSFLFFTDMLIYWIHRGLHHRLVYKRIHKPHHIWKIPTPFASHAFHPVDGFL 175
Query: 770 LGTGFFIGIMLLCDH-VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
+ I + H V+ L +V V + TI +H G D + P L PF GS HH H
Sbjct: 176 QSLPYHIYPFVFPLHKVVYLGLYVLVN-VWTISIHDG-DFRV-PQILRPFINGSAHHTDH 232
Query: 947 HMNFIGNYASTFTWWDRIFGT 1009
HM F NY FT WDRI G+
Sbjct: 233 HMFFDYNYGQYFTLWDRIGGS 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,858,076
Number of extensions: 959407
Number of successful extensions: 2586
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2579
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008362
(1208 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006736.1| C-4 methylsterol oxidase isoform 1 [Homo sapien... 567 e-162
Alignment gi|NP_001017369.1| C-4 methylsterol oxidase isoform 2 [Homo sap... 328 6e-90
Alignment gi|NP_115761.2| hypothetical protein LOC10826 [Homo sapiens]. 105 1e-22
Alignment gi|NP_003947.1| cholesterol 25-hydroxylase [Homo sapiens]. 104 2e-22
Alignment gi|NP_001020127.1| lathosterol oxidase [Homo sapiens]. 81 2e-15
Alignment gi|NP_008849.2| lathosterol oxidase [Homo sapiens]. 81 2e-15
>ref|NP_006736.1| C-4 methylsterol oxidase isoform 1 [Homo sapiens].
Length = 293
Score = 567 bits (1462), Expect = e-162
Identities = 257/282 (91%), Positives = 265/282 (93%)
Frame = +2
Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
MATNES+SIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA
Sbjct: 1 MATNESVSIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 60
Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61 LYFLFCLPGFLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120
Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
EYF+IPYDWE MPRWY LLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121 EYFNIPYDWERMPRWYFLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180
Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
GMEAEYAHPLETLILGTGFFIGI+LLCDHVILLWAWVT+RL+ETIDVHSGYDIPLNPL+L
Sbjct: 181 GMEAEYAHPLETLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNL 240
Query: 908 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTD+QYNAYN
Sbjct: 241 IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQYNAYN 282
>ref|NP_001017369.1| C-4 methylsterol oxidase isoform 2 [Homo sapiens].
Length = 162
Score = 328 bits (841), Expect = 6e-90
Identities = 144/151 (95%), Positives = 150/151 (99%)
Frame = +2
Query: 581 MPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLE 760
MPRWY LLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPFGMEAEYAHPLE
Sbjct: 1 MPRWYFLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPFGMEAEYAHPLE 60
Query: 761 TLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHD 940
TLILGTGFFIGI+LLCDHVILLWAWVT+RL+ETIDVHSGYDIPLNPL+LIPFYAGSRHHD
Sbjct: 61 TLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHD 120
Query: 941 FHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
FHHMNFIGNYASTFTWWDRIFGTD+QYNAYN
Sbjct: 121 FHHMNFIGNYASTFTWWDRIFGTDSQYNAYN 151
>ref|NP_115761.2| hypothetical protein LOC10826 [Homo sapiens].
Length = 333
Score = 105 bits (261), Expect = 1e-22
Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 3/205 (1%)
Frame = +2
Query: 416 YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
++ +Y+IQ K++P + + +LFN I FP++ Y F +++ P E +P
Sbjct: 109 FISRYRIQVGKNEPVDPVKLRQSIRTVLFNQCMISFPMVVFLYPFLKWWRDPCRRE-LPT 167
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
++ L +IE+ Y+ HRLLHH YK IHK HHE+ AP G+ + YAHP+E +
Sbjct: 168 FHWFLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWTAPIGVISLYAHPIEHAV 227
Query: 770 LG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
+G +++ H+ + W ++ LI T H GY +PF HD+H
Sbjct: 228 SNMLPVIVGPLVMGSHLSSITMWFSLALIITTISHCGYH--------LPFLPSPEFHDYH 279
Query: 947 HMNFIGNYASTFTWWDRIFGTDAQY 1021
H+ F Y D + GTD +
Sbjct: 280 HLKFNQCY-GVLGVLDHLHGTDTMF 303
>ref|NP_003947.1| cholesterol 25-hydroxylase [Homo sapiens].
Length = 272
Score = 104 bits (259), Expect = 2e-22
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
Frame = +2
Query: 410 IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
+P +++YKI D + + C L+ H FP+ ++ +P++ P
Sbjct: 65 VPALRRYKIHPDFSPSAQQLLPCLGQTLYQHVMFVFPVTL-LHWARSPALLPHE---APE 120
Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLET 763
+LL C ++ D +F+ LLHHK +Y+ HK+HH+ + F + +Y E
Sbjct: 121 LLLLLHHILFCLLLFDM-EFFVWHLLHHKVPWLYRTFHKVHHQNSSSFALATQYMSVWEL 179
Query: 764 LILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRHH 937
LG + + LL H + + V + +++ HSGY+ P + L+PF Y G HH
Sbjct: 180 FSLGFFDMMNVTLLGCHPLTTLTFHVVNIWLSVEDHSGYNFPWSTHRLVPFGWYGGVVHH 239
Query: 938 DFHHMNFIGNYASTFTWWDRIFGT 1009
D HH +F N+A FT WD+I GT
Sbjct: 240 DLHHSHFNCNFAPYFTHWDKILGT 263
>ref|NP_001020127.1| lathosterol oxidase [Homo sapiens].
Length = 299
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/125 (36%), Positives = 66/125 (52%)
Frame = +2
Query: 635 DTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLILGTGFFIGIMLLCDH 814
D + Y++HR LHH+ +YK +HK HH ++ P + HP++ + + I + H
Sbjct: 131 DMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHIYPFIFPLH 190
Query: 815 VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHHMNFIGNYASTFTWWD 994
++ + + I TI +H G D + P L PF GS HH HHM F NY FT WD
Sbjct: 191 KVVYLSLYILVNIWTISIHDG-DFRV-PQILQPFINGSAHHTDHHMFFDYNYGQYFTLWD 248
Query: 995 RIFGT 1009
RI G+
Sbjct: 249 RIGGS 253
>ref|NP_008849.2| lathosterol oxidase [Homo sapiens].
Length = 299
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/125 (36%), Positives = 66/125 (52%)
Frame = +2
Query: 635 DTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLILGTGFFIGIMLLCDH 814
D + Y++HR LHH+ +YK +HK HH ++ P + HP++ + + I + H
Sbjct: 131 DMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHIYPFIFPLH 190
Query: 815 VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHHMNFIGNYASTFTWWD 994
++ + + I TI +H G D + P L PF GS HH HHM F NY FT WD
Sbjct: 191 KVVYLSLYILVNIWTISIHDG-DFRV-PQILQPFINGSAHHTDHHMFFDYNYGQYFTLWD 248
Query: 995 RIFGT 1009
RI G+
Sbjct: 249 RIGGS 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,359,983
Number of extensions: 1115955
Number of successful extensions: 2732
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2722
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008362
(1208 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 626 e-177
>Sscrofa_Chr08
|| Length = 148491826
Score = 626 bits (316), Expect = e-177
Identities = 337/340 (99%), Gaps = 3/340 (0%)
Strand = Plus / Minus
Query: 872 agtggttatgacatccctctcaaccctttacatctcatccctttctatgctggttctcgt 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558598 agtggttatgacatccctctcaaccctttacatctcatccctttctatgctggttctcgt 45558539
Query: 932 caccatgacttccaccacatgaacttcattggaaactatgcgtcgacatttacatggtgg 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558538 caccatgacttccaccacatgaacttcattggaaactatgcgtcgacatttacatggtgg 45558479
Query: 992 gacagaatttttggaacagacgctcaatataatgcctacaatgaaaagaggaaaaaggct 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558478 gacagaatttttggaacagacgctcaatataatgcctacaatgaaaagaggaaaaaggct 45558419
Query: 1052 gagaaaaagactgaataaaaacatctcacataaaccttcccgaagatacacattttcctg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558418 gagaaaaagactgaataaaaacatctcacataaaccttcccgaagatacacattttcctg 45558359
Query: 1112 aattgaagctagtagctaacattgcttctggggagcagaaat-aacatgtctcttggctg 1170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 45558358 aattgaagctagtagctaacattgcttctggggagcagaaataaacatgtctcttggctg 45558299
Query: 1171 c-aagtgatcaaaagaacattaacaacc-ttcattatctt 1208
| |||||||||||||||||||||||||| |||||||||||
Sbjct: 45558298 caaagtgatcaaaagaacattaacaacctttcattatctt 45558259
Score = 575 bits (290), Expect = e-161
Identities = 290/290 (100%)
Strand = Plus / Minus
Query: 154 cagaattataaggctgcctgcagacatttgaaaaatggcaacaaatgaaagtatcagcat 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611677 cagaattataaggctgcctgcagacatttgaaaaatggcaacaaatgaaagtatcagcat 45611618
Query: 214 ctttagttcggcatccttggctgtggagtatgtagattcacttctacctgagaatcctct 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611617 ctttagttcggcatccttggctgtggagtatgtagattcacttctacctgagaatcctct 45611558
Query: 274 gcaggaaccatttaaaaatgcttggaattatatgttgaacaattatacaaagttccagat 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611557 gcaggaaccatttaaaaatgcttggaattatatgttgaacaattatacaaagttccagat 45611498
Query: 334 tgcaacgtggggatccctcatagttcatgaggccctttatttctttttctgtttacctgg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611497 tgcaacgtggggatccctcatagttcatgaggccctttatttctttttctgtttacctgg 45611438
Query: 394 atttttgtttcaatttataccttacatgaaaaagtacaaaattcagaagg 443
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611437 atttttgtttcaatttataccttacatgaaaaagtacaaaattcagaagg 45611388
Score = 313 bits (158), Expect = 1e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 712 gtttcaggctccatttgggatggaagctgaatatgcacaccctctggaaaccctaattct 771
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45603448 gttttaggctccatttgggatggaagctgaatatgcacaccctctggaaaccctaattct 45603389
Query: 772 gggaactggatttttcattggaatcatgctgttatgtgatcatgttattcttctttgggc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45603388 gggaactggatttttcattggaatcatgctgttatgtgatcatgttattcttctttgggc 45603329
Query: 832 ctgggtgaccgttcgtttgatagaaactatcgatgtccatag 873
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45603328 ctgggtgaccgttcgtttgatagaaactatcgatgtccatag 45603287
Score = 307 bits (155), Expect = 8e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 2 agagtcacacgatgacggcagctgcaccgaccaatcacagagcctggaaggtggggcctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45618282 agagtcacacgatgacggcagctgcaccgaccaatcacagagcctggaaggtggggcctg 45618223
Query: 62 gctctcgcaagcgaataacgaccggaggagctggaggcctcaccgagctgcgcatcccag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45618222 gctctcgcaagcgaataacgaccggaggagctggaggcctcaccgagctgcgcatcccag 45618163
Query: 122 tggagcttgggaggcggcggccgcgcagcgtgcag 156
|||||||||||||||||||||||||||||||||||
Sbjct: 45618162 tggagcttgggaggcggcggccgcgcagcgtgcag 45618128
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 441 aggataaaccagaaacatgggaaaaccagtggaaatgctttaaagtacttctgtttaatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45606817 aggataaaccagaaacatgggaaaaccagtggaaatgctttaaagtacttctgtttaatc 45606758
Query: 501 acttttgtatccagtttcctttgatttgtggaacttattattttacggagtatttcagta 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45606757 acttttgtatccagtttcctttgatttgtggaacttattattttacggagtatttcagta 45606698
Query: 561 ttccttacgattgggaaacaatgccaagatggta 594
||||||||||||||||||||||||||||||||||
Sbjct: 45606697 ttccttacgattgggaaacaatgccaagatggta 45606664
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 591 ggtacatgcttttggcaagatgctttggctgtgctgtgattgaggatacctggcactatt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45605466 ggtacatgcttttggcaagatgctttggctgtgctgtgattgaggatacctggcactatt 45605407
Query: 651 tcctgcataggctcttacaccacaaaagaatatataaatatattcataaaattcatcatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45605406 tcctgcataggctcttacaccacaaaagaatatataaatatattcataaaattcatcatg 45605347
Query: 711 agtttcagg 719
|||||||||
Sbjct: 45605346 agtttcagg 45605338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,449,573
Number of extensions: 636
Number of successful extensions: 636
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 6
Length of query: 1208
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1187
Effective length of database: 2,808,413,156
Effective search space: 3333586416172
Effective search space used: 3333586416172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)