Animal-Genome cDNA 20110601C-008362


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008362
         (1208 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001092333.1| C-4 methylsterol oxidase [Bos taurus].            570   e-163
Alignment   gi|NP_001068711.1| cholesterol 25-hydroxylase [Bos taurus].          109   4e-24
Alignment   gi|NP_001030433.1| sterol-C5-desaturase (ERG3 delta-5-desaturas...    50   4e-06

>ref|NP_001092333.1| C-4 methylsterol oxidase [Bos taurus].
          Length = 293

 Score =  570 bits (1470), Expect = e-163
 Identities = 259/282 (91%), Positives = 266/282 (94%)
 Frame = +2

Query: 188  MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
            MATNESIS+FSSASLAVEYVDSLLP+NPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHE 
Sbjct: 1    MATNESISVFSSASLAVEYVDSLLPDNPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEV 60

Query: 368  XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
                          IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61   LYFLFCLPGFLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120

Query: 548  EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
            EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121  EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180

Query: 728  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
            GMEAEYAHPLET+ILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPL+L
Sbjct: 181  GMEAEYAHPLETIILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLNL 240

Query: 908  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
            IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTD+Q+NAYN
Sbjct: 241  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQFNAYN 282


>ref|NP_001068711.1| cholesterol 25-hydroxylase [Bos taurus].
          Length = 270

 Score =  109 bits (273), Expect = 4e-24
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 4/204 (1%)
 Frame = +2

Query: 410  IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            +P +++YKI  D   +      C    L+ H    FP+    ++      +P +    P 
Sbjct: 65   VPTLRRYKIHPDFSPSARQLLPCLGQTLYQHVVFVFPMTL-LHWAVSPALLPAE---APE 120

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLET 763
             + L++    C ++ DT  +F+  LLHHK   +Y+  HK+HH+  +PF +  +Y    E 
Sbjct: 121  LFQLVSHVALCLLLFDT-EFFVWHLLHHKVPWLYRTFHKMHHQNSSPFALSTQYMSVGEL 179

Query: 764  LILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRHH 937
              LG    + ++LL  H +    +  V +  +++ HSGYD P +   L+PF  + G  HH
Sbjct: 180  FSLGVFDMVNVLLLQCHPLTSLTFHVVNIWLSVEDHSGYDFPWSTHRLVPFGWFGGVAHH 239

Query: 938  DFHHMNFIGNYASTFTWWDRIFGT 1009
            D HH  F  N+A  FT WD+I GT
Sbjct: 240  DLHHSQFNCNFAPYFTHWDKILGT 263


>ref|NP_001030433.1| sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, fungal)-like
           [Bos taurus].
          Length = 195

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +2

Query: 590 WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
           W+ L+A         D   Y++HR LHHK +YK +HK HH ++ P    +   HPL+  +
Sbjct: 116 WFQLVASVLSFLFFTDMLIYWIHRGLHHKLVYKRLHKPHHIWKIPTPFASHAFHPLDGFL 175

Query: 770 LGTGFFI 790
               + I
Sbjct: 176 QSLPYHI 182


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,173,590
Number of extensions: 1095812
Number of successful extensions: 2736
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2731
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008362
         (1208 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532714.1| PREDICTED: similar to C-4 methylsterol oxidase ...   565   e-161
Alignment   gi|XP_867951.1| PREDICTED: similar to C-4 methylsterol oxidase ...   451   e-127
Alignment   gi|XP_546281.2| PREDICTED: similar to CG1998-PA [Canis familiar...   107   2e-23
Alignment   gi|XP_543596.1| PREDICTED: similar to cholesterol 25-hydroxylas...    98   1e-20
Alignment   gi|XP_853004.1| PREDICTED: similar to sterol-C5-desaturase-like...    84   2e-16

>ref|XP_532714.1| PREDICTED: similar to C-4 methylsterol oxidase (Methylsterol
            monooxygenase) isoform 1 [Canis familiaris].
          Length = 293

 Score =  565 bits (1456), Expect = e-161
 Identities = 257/282 (91%), Positives = 264/282 (93%)
 Frame = +2

Query: 188  MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
            MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHE 
Sbjct: 1    MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEV 60

Query: 368  XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
                          IP+MKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61   LYFLFCLPGFLFQFIPFMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120

Query: 548  EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
            EYF+IPYDWE MPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121  EYFNIPYDWERMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180

Query: 728  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
            GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVT+RLIETIDVHSGYDIPLNPL+L
Sbjct: 181  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTIRLIETIDVHSGYDIPLNPLNL 240

Query: 908  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
            IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTD+Q+ AYN
Sbjct: 241  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQFTAYN 282


>ref|XP_867951.1| PREDICTED: similar to C-4 methylsterol oxidase (Methylsterol
           monooxygenase) isoform 2 [Canis familiaris].
          Length = 266

 Score =  451 bits (1159), Expect = e-127
 Identities = 207/228 (90%), Positives = 211/228 (92%)
 Frame = +2

Query: 188 MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
           MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHE 
Sbjct: 1   MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEV 60

Query: 368 XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
                         IP+MKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61  LYFLFCLPGFLFQFIPFMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120

Query: 548 EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
           EYF+IPYDWE MPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121 EYFNIPYDWERMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180

Query: 728 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVH 871
           GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVT+RLIETIDVH
Sbjct: 181 GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTIRLIETIDVH 228


>ref|XP_546281.2| PREDICTED: similar to CG1998-PA [Canis familiaris].
          Length = 590

 Score =  107 bits (268), Expect = 2e-23
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
 Frame = +2

Query: 416  YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            ++ +Y+IQ  K++P   E   +  + +LFN + I  P++   Y   + +  P   E +P 
Sbjct: 366  FISRYRIQVGKNEPVDAEKLRRSIRTVLFNQYMISLPMVVLLYPVLKLWGNPCRRE-LPT 424

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            ++  L       +IE+   Y+ HRLLHH   YK IHK HHE+ AP G+ + YAHP+E ++
Sbjct: 425  FHWFLLELTVFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWTAPIGVISFYAHPIEHVV 484

Query: 770  LGT-GFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
              T    +G +L+  H+  +  W ++ LI T   H GY         +PF      HD+H
Sbjct: 485  SNTLPVMVGPILMGSHLSSITMWFSLALIITTISHCGYH--------LPFLPSPEFHDYH 536

Query: 947  HMNFIGNYASTFTWWDRIFGTDAQY 1021
            H+ F   Y       D + GTD  +
Sbjct: 537  HLKFNQCY-GVLGVLDHLHGTDTLF 560


>ref|XP_543596.1| PREDICTED: similar to cholesterol 25-hydroxylase [Canis familiaris].
          Length = 270

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
 Frame = +2

Query: 419  MKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFP---LICGTYYFTEYFSIPYDW-ETMP 586
            +++YK+  D   +      C    +  H  +  P   L C           P  W    P
Sbjct: 68   LRRYKVHPDCGPSARQLLGCLGRTVCQHVALLLPASLLHCARG--------PAPWPREAP 119

Query: 587  RWYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLE 760
                L     GC ++ D    F   +LHH+   +Y+  HK+HH+  A F +  +Y    E
Sbjct: 120  ELLQLARHVLGCLLLFDA-EVFAWHVLHHRVPWLYRTFHKLHHQHAASFALATQYMGAWE 178

Query: 761  TLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRH 934
             L LG    + ++LL  H + + A+  + +  +++ HSGYD P +   L+PF  Y G  H
Sbjct: 179  LLSLGFFHVLNVVLLQCHPLSVLAFHLLNIWLSVEDHSGYDFPWSTHRLVPFGWYGGVAH 238

Query: 935  HDFHHMNFIGNYASTFTWWDRIFGT 1009
            HD HH  F  N+A  FT WDRI GT
Sbjct: 239  HDLHHSQFNCNFAPYFTHWDRILGT 263


>ref|XP_853004.1| PREDICTED: similar to sterol-C5-desaturase-like [Canis familiaris].
          Length = 299

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 48/140 (34%), Positives = 69/140 (49%)
 Frame = +2

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            W+ L+          D   Y++HR LHH+ +YK IHK HH ++ P    +   HP++  +
Sbjct: 116  WFRLIISILSFLFFTDMLIYWIHRGLHHRLVYKRIHKPHHLWKIPTPFASHAFHPVDGFL 175

Query: 770  LGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHH 949
                + I   +   H ++  +   +  I TI +H G D  + P  L PF  GS HH  HH
Sbjct: 176  QSLPYHIYPFIFPLHKVVYLSLYILVNIWTISIHDG-DFRV-PQILRPFINGSAHHTDHH 233

Query: 950  MNFIGNYASTFTWWDRIFGT 1009
            M F  NY   FT WDRI G+
Sbjct: 234  MFFDYNYGQYFTLWDRIGGS 253


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,939,648
Number of extensions: 1120908
Number of successful extensions: 2873
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2868
Number of HSP's successfully gapped: 5
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008362
         (1208 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998917.1| C-4 methylsterol oxidase [Sus scrofa].               578   e-165
Alignment   gi|XP_001928655.2| PREDICTED: cholesterol 25-hydroxylase-like [...   110   1e-24
Alignment   gi|XP_003134170.1| PREDICTED: uncharacterized protein C5orf4 ho...   103   2e-22
Alignment   gi|XP_003134169.1| PREDICTED: uncharacterized protein C5orf4 ho...   103   2e-22
Alignment   gi|XP_003361443.1| PREDICTED: uncharacterized protein C5orf4 ho...   101   7e-22
Alignment   gi|XP_003129992.1| PREDICTED: lathosterol oxidase-like [Sus scr...    87   1e-17

>ref|NP_998917.1| C-4 methylsterol oxidase [Sus scrofa].
          Length = 293

 Score =  578 bits (1489), Expect = e-165
 Identities = 265/282 (93%), Positives = 267/282 (94%)
 Frame = +2

Query: 188  MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
            MATN+SISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA
Sbjct: 1    MATNQSISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 60

Query: 368  XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
                          IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT
Sbjct: 61   LYFFFCLPGFLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 120

Query: 548  EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
            EYFSIPYDWETMPRWY+ LARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF
Sbjct: 121  EYFSIPYDWETMPRWYIALARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 180

Query: 728  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
            GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL
Sbjct: 181  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 240

Query: 908  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
            IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN
Sbjct: 241  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 282


>ref|XP_001928655.2| PREDICTED: cholesterol 25-hydroxylase-like [Sus scrofa].
          Length = 311

 Score =  110 bits (276), Expect = 1e-24
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 5/205 (2%)
 Frame = +2

Query: 410  IPYMKKYKIQKD-KPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMP 586
            +P +++YKI  D  P  W+    C  + L+ H    FP+    +  +     P      P
Sbjct: 106  VPALRRYKIHPDFSPSVWQ-LLPCLGLTLYQHVVFVFPMTLLHWAASPVLLPP----EAP 160

Query: 587  RWYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLE 760
                L+     C ++ DT  +F+  +LHHK   +Y+  HK+HH+  + F +  +Y    E
Sbjct: 161  ELLQLVRHIVLCLLLFDT-EFFIWHVLHHKVPWLYRTFHKMHHQNSSSFALATQYMSVGE 219

Query: 761  TLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRH 934
             L LG    + IMLL  H + +  +  + +  +++ HSGYD P +   L+PF  Y G  H
Sbjct: 220  LLSLGVFDMVNIMLLRCHPLTVLIFHVINIWLSVEDHSGYDFPWSTHRLVPFGWYGGVTH 279

Query: 935  HDFHHMNFIGNYASTFTWWDRIFGT 1009
            HD HH  F  N+A  FT WD+I GT
Sbjct: 280  HDLHHSQFNCNFAPYFTHWDKILGT 304


>ref|XP_003134170.1| PREDICTED: uncharacterized protein C5orf4 homolog isoform 2 [Sus
            scrofa].
          Length = 310

 Score =  103 bits (257), Expect = 2e-22
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 3/205 (1%)
 Frame = +2

Query: 416  YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            ++ +Y+IQ  K+ P       K  + +LFN F I  PL+   Y   + +  P   E +P 
Sbjct: 86   FISRYRIQVGKNDPVDPVKLRKAIQTVLFNQFVISLPLLVFLYPILKLWGDPCRQE-LPT 144

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            ++  L       +IE+   Y+ HRLLHH  +YK IHK HHE+ AP G+ + YAHP+E + 
Sbjct: 145  FHWFLLELAIFTLIEEVLFYYSHRLLHHPTLYKKIHKKHHEWTAPIGVISLYAHPVEHVA 204

Query: 770  LG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
                   +G +++  H+  +  W ++  I TI  H GY         +PF      HD+H
Sbjct: 205  SNMLPAMVGPIIMGSHLSSITVWFSLAFIITIISHCGYH--------LPFLPSPEFHDYH 256

Query: 947  HMNFIGNYASTFTWWDRIFGTDAQY 1021
            H+ F   Y       D + GTD  +
Sbjct: 257  HLKFNQCY-GVLGVLDHLHGTDTVF 280


>ref|XP_003134169.1| PREDICTED: uncharacterized protein C5orf4 homolog isoform 1 [Sus
            scrofa].
          Length = 333

 Score =  103 bits (257), Expect = 2e-22
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 3/205 (1%)
 Frame = +2

Query: 416  YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            ++ +Y+IQ  K+ P       K  + +LFN F I  PL+   Y   + +  P   E +P 
Sbjct: 109  FISRYRIQVGKNDPVDPVKLRKAIQTVLFNQFVISLPLLVFLYPILKLWGDPCRQE-LPT 167

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            ++  L       +IE+   Y+ HRLLHH  +YK IHK HHE+ AP G+ + YAHP+E + 
Sbjct: 168  FHWFLLELAIFTLIEEVLFYYSHRLLHHPTLYKKIHKKHHEWTAPIGVISLYAHPVEHVA 227

Query: 770  LG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
                   +G +++  H+  +  W ++  I TI  H GY         +PF      HD+H
Sbjct: 228  SNMLPAMVGPIIMGSHLSSITVWFSLAFIITIISHCGYH--------LPFLPSPEFHDYH 279

Query: 947  HMNFIGNYASTFTWWDRIFGTDAQY 1021
            H+ F   Y       D + GTD  +
Sbjct: 280  HLKFNQCY-GVLGVLDHLHGTDTVF 303


>ref|XP_003361443.1| PREDICTED: uncharacterized protein C5orf4 homolog, partial [Sus
            scrofa].
          Length = 251

 Score =  101 bits (252), Expect = 7e-22
 Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
 Frame = +2

Query: 416  YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPY-DWETMP 586
            ++ +Y+IQ  K+ P       K  + +LFN F I  PL+   Y   + +  P        
Sbjct: 27   FISRYRIQVGKNDPVDPVKLRKAIQTVLFNQFVISLPLLVFLYPILKLWGDPCRXXXXXX 86

Query: 587  RWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETL 766
             W++L    F   +IE+   Y+ HRLLHH  +YK IHK HHE+ AP G+ + YAHP+E +
Sbjct: 87   XWFLLELAIF--TLIEEVLFYYSHRLLHHPTLYKKIHKKHHEWTAPIGVISLYAHPVEHV 144

Query: 767  ILG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDF 943
                    +G +++  H+  +  W ++  I TI  H GY         +PF      HD+
Sbjct: 145  ASNMLPAMVGPIIMGSHLSSITVWFSLAFIITIISHCGYH--------LPFLPSPEFHDY 196

Query: 944  HHMNFIGNYASTFTWWDRIFGTDAQY 1021
            HH+ F   Y       D + GTD  +
Sbjct: 197  HHLKFNQCY-GVLGVLDHLHGTDTVF 221


>ref|XP_003129992.1| PREDICTED: lathosterol oxidase-like [Sus scrofa].
          Length = 299

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
 Frame = +2

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            W+ LLA         D   Y++HR LHH+ +YK +HK HH ++ P    +   HPL+  +
Sbjct: 116  WFRLLASVLSFLFFTDMLIYWIHRGLHHRLLYKRLHKPHHIWKIPTPFASHAFHPLDGFL 175

Query: 770  LGTGFFIGIMLLCDH-VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
                + I   +   H V+ L  ++ V  I TI +H G D  + P  L PF  GS HH  H
Sbjct: 176  QSLPYHIYPFVFPLHKVVYLGLYILVN-IWTISIHDG-DFRV-PQSLRPFINGSAHHTDH 232

Query: 947  HMNFIGNYASTFTWWDRIFGT 1009
            HM F  NY   FT WDRI G+
Sbjct: 233  HMLFDYNYGQYFTLWDRIGGS 253


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,334,799
Number of extensions: 697967
Number of successful extensions: 1746
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008362
         (1208 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079712.1| C-4 methylsterol oxidase [Mus musculus].             527   e-150
Alignment   gi|NP_034020.1| cholesterol 25-hydroxylase [Mus musculus].           104   1e-22
Alignment   gi|NP_766357.1| lathosterol oxidase [Mus musculus].                   82   8e-16

>ref|NP_079712.1| C-4 methylsterol oxidase [Mus musculus].
          Length = 293

 Score =  527 bits (1357), Expect = e-150
 Identities = 235/281 (83%), Positives = 256/281 (91%)
 Frame = +2

Query: 188  MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
            MATN+S+ +FSSASLAVEYVDSLLPENPLQEPFKNAW YML+NYTKFQIATWGSLIVHEA
Sbjct: 1    MATNKSVGVFSSASLAVEYVDSLLPENPLQEPFKNAWVYMLDNYTKFQIATWGSLIVHEA 60

Query: 368  XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
                          IPYM+KYKIQKDKPET+E QWKC K +LFNHF IQ PLICGTYYFT
Sbjct: 61   IYFLFSLPGFLFQFIPYMRKYKIQKDKPETFEGQWKCLKKILFNHFFIQLPLICGTYYFT 120

Query: 548  EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
            E+F+IPYDWE MPRWY+ LARC GCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121  EFFNIPYDWERMPRWYLTLARCLGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180

Query: 728  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
            G+EAEYAHPLETLILGTGFFIGI+LLCDHVILLWAWVT+RL+ETIDVHSGYDIPLNPL+L
Sbjct: 181  GIEAEYAHPLETLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNL 240

Query: 908  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAY 1030
            +PFY G+RHHDFHHMNFIGNYASTFTWWD++FGTDAQY+AY
Sbjct: 241  VPFYTGARHHDFHHMNFIGNYASTFTWWDKLFGTDAQYHAY 281


>ref|NP_034020.1| cholesterol 25-hydroxylase [Mus musculus].
          Length = 298

 Score =  104 bits (260), Expect = 1e-22
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
 Frame = +2

Query: 410  IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            +P +++YKI  D   + +    C  + L+ H    FP+    ++      +P +    P 
Sbjct: 65   VPILRRYKIHPDFSPSVKQLLPCLGLTLYQHLVFVFPVTL-LHWVRSPALLPQE---APE 120

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLET 763
               LL+    C ++ DT   F   LLHHK   +Y+  HK+HH+  + F +  +Y    E 
Sbjct: 121  LVQLLSHVLICLLLFDT-EIFAWHLLHHKVPWLYRTFHKVHHQNSSSFALATQYMSFWEL 179

Query: 764  LILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRHH 937
            L L     + + +L  H + ++ +  + +  +++ HSGYD P +   L+PF  Y G  HH
Sbjct: 180  LSLTFFDVLNVAVLRCHPLTIFTFHVINIWLSVEDHSGYDFPWSTHRLVPFGWYGGVAHH 239

Query: 938  DFHHMNFIGNYASTFTWWDRIFGT 1009
            D HH  F  N+A  FT WD++ GT
Sbjct: 240  DMHHSQFNCNFAPYFTHWDKMLGT 263


>ref|NP_766357.1| lathosterol oxidase [Mus musculus].
          Length = 299

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
 Frame = +2

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            W  L+          D   Y++HR LHH+ +YK IHK HH ++ P    +   HP++  +
Sbjct: 116  WIHLMVSVVSFLFFTDMLIYWIHRGLHHRLVYKRIHKPHHIWKIPTPFASHAFHPVDGFL 175

Query: 770  LGTGFFIGIMLLCDH-VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
                + I   +   H V+ L  +V V  + TI +H G D  + P  L PF  GS HH  H
Sbjct: 176  QSLPYHIYPFVFPLHKVVYLGLYVLVN-VWTISIHDG-DFRV-PQILRPFINGSAHHTDH 232

Query: 947  HMNFIGNYASTFTWWDRIFGT 1009
            HM F  NY   FT WDRI G+
Sbjct: 233  HMFFDYNYGQYFTLWDRIGGS 253


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,858,076
Number of extensions: 959407
Number of successful extensions: 2586
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2579
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008362
         (1208 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006736.1| C-4 methylsterol oxidase isoform 1 [Homo sapien...   567   e-162
Alignment   gi|NP_001017369.1| C-4 methylsterol oxidase isoform 2 [Homo sap...   328   6e-90
Alignment   gi|NP_115761.2| hypothetical protein LOC10826 [Homo sapiens].        105   1e-22
Alignment   gi|NP_003947.1| cholesterol 25-hydroxylase [Homo sapiens].           104   2e-22
Alignment   gi|NP_001020127.1| lathosterol oxidase [Homo sapiens].                81   2e-15
Alignment   gi|NP_008849.2| lathosterol oxidase [Homo sapiens].                   81   2e-15

>ref|NP_006736.1| C-4 methylsterol oxidase isoform 1 [Homo sapiens].
          Length = 293

 Score =  567 bits (1462), Expect = e-162
 Identities = 257/282 (91%), Positives = 265/282 (93%)
 Frame = +2

Query: 188  MATNESISIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 367
            MATNES+SIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA
Sbjct: 1    MATNESVSIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLNNYTKFQIATWGSLIVHEA 60

Query: 368  XXXXXXXXXXXXXXIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFT 547
                          IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQ PLICGTYYFT
Sbjct: 61   LYFLFCLPGFLFQFIPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQLPLICGTYYFT 120

Query: 548  EYFSIPYDWETMPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPF 727
            EYF+IPYDWE MPRWY LLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPF
Sbjct: 121  EYFNIPYDWERMPRWYFLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPF 180

Query: 728  GMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHL 907
            GMEAEYAHPLETLILGTGFFIGI+LLCDHVILLWAWVT+RL+ETIDVHSGYDIPLNPL+L
Sbjct: 181  GMEAEYAHPLETLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNL 240

Query: 908  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
            IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTD+QYNAYN
Sbjct: 241  IPFYAGSRHHDFHHMNFIGNYASTFTWWDRIFGTDSQYNAYN 282


>ref|NP_001017369.1| C-4 methylsterol oxidase isoform 2 [Homo sapiens].
          Length = 162

 Score =  328 bits (841), Expect = 6e-90
 Identities = 144/151 (95%), Positives = 150/151 (99%)
 Frame = +2

Query: 581  MPRWYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLE 760
            MPRWY LLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHK+HHEFQAPFGMEAEYAHPLE
Sbjct: 1    MPRWYFLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPFGMEAEYAHPLE 60

Query: 761  TLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHD 940
            TLILGTGFFIGI+LLCDHVILLWAWVT+RL+ETIDVHSGYDIPLNPL+LIPFYAGSRHHD
Sbjct: 61   TLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHD 120

Query: 941  FHHMNFIGNYASTFTWWDRIFGTDAQYNAYN 1033
            FHHMNFIGNYASTFTWWDRIFGTD+QYNAYN
Sbjct: 121  FHHMNFIGNYASTFTWWDRIFGTDSQYNAYN 151


>ref|NP_115761.2| hypothetical protein LOC10826 [Homo sapiens].
          Length = 333

 Score =  105 bits (261), Expect = 1e-22
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 3/205 (1%)
 Frame = +2

Query: 416  YMKKYKIQ--KDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            ++ +Y+IQ  K++P       +  + +LFN   I FP++   Y F +++  P   E +P 
Sbjct: 109  FISRYRIQVGKNEPVDPVKLRQSIRTVLFNQCMISFPMVVFLYPFLKWWRDPCRRE-LPT 167

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLI 769
            ++  L       +IE+   Y+ HRLLHH   YK IHK HHE+ AP G+ + YAHP+E  +
Sbjct: 168  FHWFLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWTAPIGVISLYAHPIEHAV 227

Query: 770  LG-TGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFH 946
                   +G +++  H+  +  W ++ LI T   H GY         +PF      HD+H
Sbjct: 228  SNMLPVIVGPLVMGSHLSSITMWFSLALIITTISHCGYH--------LPFLPSPEFHDYH 279

Query: 947  HMNFIGNYASTFTWWDRIFGTDAQY 1021
            H+ F   Y       D + GTD  +
Sbjct: 280  HLKFNQCY-GVLGVLDHLHGTDTMF 303


>ref|NP_003947.1| cholesterol 25-hydroxylase [Homo sapiens].
          Length = 272

 Score =  104 bits (259), Expect = 2e-22
 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
 Frame = +2

Query: 410  IPYMKKYKIQKDKPETWENQWKCFKVLLFNHFCIQFPLICGTYYFTEYFSIPYDWETMPR 589
            +P +++YKI  D   + +    C    L+ H    FP+    ++      +P++    P 
Sbjct: 65   VPALRRYKIHPDFSPSAQQLLPCLGQTLYQHVMFVFPVTL-LHWARSPALLPHE---APE 120

Query: 590  WYMLLARCFGCAVIEDTWHYFLHRLLHHKR--IYKYIHKIHHEFQAPFGMEAEYAHPLET 763
              +LL     C ++ D   +F+  LLHHK   +Y+  HK+HH+  + F +  +Y    E 
Sbjct: 121  LLLLLHHILFCLLLFDM-EFFVWHLLHHKVPWLYRTFHKVHHQNSSSFALATQYMSVWEL 179

Query: 764  LILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPF--YAGSRHH 937
              LG    + + LL  H +    +  V +  +++ HSGY+ P +   L+PF  Y G  HH
Sbjct: 180  FSLGFFDMMNVTLLGCHPLTTLTFHVVNIWLSVEDHSGYNFPWSTHRLVPFGWYGGVVHH 239

Query: 938  DFHHMNFIGNYASTFTWWDRIFGT 1009
            D HH +F  N+A  FT WD+I GT
Sbjct: 240  DLHHSHFNCNFAPYFTHWDKILGT 263


>ref|NP_001020127.1| lathosterol oxidase [Homo sapiens].
          Length = 299

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 45/125 (36%), Positives = 66/125 (52%)
 Frame = +2

Query: 635  DTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLILGTGFFIGIMLLCDH 814
            D + Y++HR LHH+ +YK +HK HH ++ P    +   HP++  +    + I   +   H
Sbjct: 131  DMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHIYPFIFPLH 190

Query: 815  VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHHMNFIGNYASTFTWWD 994
             ++  +   +  I TI +H G D  + P  L PF  GS HH  HHM F  NY   FT WD
Sbjct: 191  KVVYLSLYILVNIWTISIHDG-DFRV-PQILQPFINGSAHHTDHHMFFDYNYGQYFTLWD 248

Query: 995  RIFGT 1009
            RI G+
Sbjct: 249  RIGGS 253


>ref|NP_008849.2| lathosterol oxidase [Homo sapiens].
          Length = 299

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 45/125 (36%), Positives = 66/125 (52%)
 Frame = +2

Query: 635  DTWHYFLHRLLHHKRIYKYIHKIHHEFQAPFGMEAEYAHPLETLILGTGFFIGIMLLCDH 814
            D + Y++HR LHH+ +YK +HK HH ++ P    +   HP++  +    + I   +   H
Sbjct: 131  DMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHIYPFIFPLH 190

Query: 815  VILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHHMNFIGNYASTFTWWD 994
             ++  +   +  I TI +H G D  + P  L PF  GS HH  HHM F  NY   FT WD
Sbjct: 191  KVVYLSLYILVNIWTISIHDG-DFRV-PQILQPFINGSAHHTDHHMFFDYNYGQYFTLWD 248

Query: 995  RIFGT 1009
            RI G+
Sbjct: 249  RIGGS 253


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,359,983
Number of extensions: 1115955
Number of successful extensions: 2732
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2722
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008362
         (1208 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         626   e-177

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  626 bits (316), Expect = e-177
 Identities = 337/340 (99%), Gaps = 3/340 (0%)
 Strand = Plus / Minus

                                                                            
Query: 872      agtggttatgacatccctctcaaccctttacatctcatccctttctatgctggttctcgt 931
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558598 agtggttatgacatccctctcaaccctttacatctcatccctttctatgctggttctcgt 45558539

                                                                            
Query: 932      caccatgacttccaccacatgaacttcattggaaactatgcgtcgacatttacatggtgg 991
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558538 caccatgacttccaccacatgaacttcattggaaactatgcgtcgacatttacatggtgg 45558479

                                                                            
Query: 992      gacagaatttttggaacagacgctcaatataatgcctacaatgaaaagaggaaaaaggct 1051
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558478 gacagaatttttggaacagacgctcaatataatgcctacaatgaaaagaggaaaaaggct 45558419

                                                                            
Query: 1052     gagaaaaagactgaataaaaacatctcacataaaccttcccgaagatacacattttcctg 1111
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45558418 gagaaaaagactgaataaaaacatctcacataaaccttcccgaagatacacattttcctg 45558359

                                                                            
Query: 1112     aattgaagctagtagctaacattgcttctggggagcagaaat-aacatgtctcttggctg 1170
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 45558358 aattgaagctagtagctaacattgcttctggggagcagaaataaacatgtctcttggctg 45558299

                                                        
Query: 1171     c-aagtgatcaaaagaacattaacaacc-ttcattatctt 1208
                | |||||||||||||||||||||||||| |||||||||||
Sbjct: 45558298 caaagtgatcaaaagaacattaacaacctttcattatctt 45558259



 Score =  575 bits (290), Expect = e-161
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                            
Query: 154      cagaattataaggctgcctgcagacatttgaaaaatggcaacaaatgaaagtatcagcat 213
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611677 cagaattataaggctgcctgcagacatttgaaaaatggcaacaaatgaaagtatcagcat 45611618

                                                                            
Query: 214      ctttagttcggcatccttggctgtggagtatgtagattcacttctacctgagaatcctct 273
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611617 ctttagttcggcatccttggctgtggagtatgtagattcacttctacctgagaatcctct 45611558

                                                                            
Query: 274      gcaggaaccatttaaaaatgcttggaattatatgttgaacaattatacaaagttccagat 333
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611557 gcaggaaccatttaaaaatgcttggaattatatgttgaacaattatacaaagttccagat 45611498

                                                                            
Query: 334      tgcaacgtggggatccctcatagttcatgaggccctttatttctttttctgtttacctgg 393
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611497 tgcaacgtggggatccctcatagttcatgaggccctttatttctttttctgtttacctgg 45611438

                                                                  
Query: 394      atttttgtttcaatttataccttacatgaaaaagtacaaaattcagaagg 443
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45611437 atttttgtttcaatttataccttacatgaaaaagtacaaaattcagaagg 45611388



 Score =  313 bits (158), Expect = 1e-82
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                            
Query: 712      gtttcaggctccatttgggatggaagctgaatatgcacaccctctggaaaccctaattct 771
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45603448 gttttaggctccatttgggatggaagctgaatatgcacaccctctggaaaccctaattct 45603389

                                                                            
Query: 772      gggaactggatttttcattggaatcatgctgttatgtgatcatgttattcttctttgggc 831
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45603388 gggaactggatttttcattggaatcatgctgttatgtgatcatgttattcttctttgggc 45603329

                                                          
Query: 832      ctgggtgaccgttcgtttgatagaaactatcgatgtccatag 873
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45603328 ctgggtgaccgttcgtttgatagaaactatcgatgtccatag 45603287



 Score =  307 bits (155), Expect = 8e-81
 Identities = 155/155 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        agagtcacacgatgacggcagctgcaccgaccaatcacagagcctggaaggtggggcctg 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45618282 agagtcacacgatgacggcagctgcaccgaccaatcacagagcctggaaggtggggcctg 45618223

                                                                            
Query: 62       gctctcgcaagcgaataacgaccggaggagctggaggcctcaccgagctgcgcatcccag 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45618222 gctctcgcaagcgaataacgaccggaggagctggaggcctcaccgagctgcgcatcccag 45618163

                                                   
Query: 122      tggagcttgggaggcggcggccgcgcagcgtgcag 156
                |||||||||||||||||||||||||||||||||||
Sbjct: 45618162 tggagcttgggaggcggcggccgcgcagcgtgcag 45618128



 Score =  305 bits (154), Expect = 3e-80
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                            
Query: 441      aggataaaccagaaacatgggaaaaccagtggaaatgctttaaagtacttctgtttaatc 500
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45606817 aggataaaccagaaacatgggaaaaccagtggaaatgctttaaagtacttctgtttaatc 45606758

                                                                            
Query: 501      acttttgtatccagtttcctttgatttgtggaacttattattttacggagtatttcagta 560
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45606757 acttttgtatccagtttcctttgatttgtggaacttattattttacggagtatttcagta 45606698

                                                  
Query: 561      ttccttacgattgggaaacaatgccaagatggta 594
                ||||||||||||||||||||||||||||||||||
Sbjct: 45606697 ttccttacgattgggaaacaatgccaagatggta 45606664



 Score =  256 bits (129), Expect = 2e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 591      ggtacatgcttttggcaagatgctttggctgtgctgtgattgaggatacctggcactatt 650
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45605466 ggtacatgcttttggcaagatgctttggctgtgctgtgattgaggatacctggcactatt 45605407

                                                                            
Query: 651      tcctgcataggctcttacaccacaaaagaatatataaatatattcataaaattcatcatg 710
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45605406 tcctgcataggctcttacaccacaaaagaatatataaatatattcataaaattcatcatg 45605347

                         
Query: 711      agtttcagg 719
                |||||||||
Sbjct: 45605346 agtttcagg 45605338


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,449,573
Number of extensions: 636
Number of successful extensions: 636
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 6
Length of query: 1208
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1187
Effective length of database: 2,808,413,156
Effective search space: 3333586416172
Effective search space used: 3333586416172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)