Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008369
(869 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070455.1| placenta-specific gene 8 protein [Bos taurus]. 214 1e-55
Alignment gi|NP_001020496.1| placenta-specific 8 [Bos taurus]. 140 1e-33
Alignment gi|NP_001069010.1| cornifelin [Bos taurus]. 81 1e-15
Alignment gi|XP_001250422.2| PREDICTED: cornifelin-like [Bos taurus]. 81 1e-15
Alignment gi|NP_001180114.1| PLAC8-like protein 1 [Bos taurus]. 77 3e-14
Alignment gi|XP_002689324.1| PREDICTED: PLAC8-like 1-like [Bos taurus]. 77 3e-14
>ref|NP_001070455.1| placenta-specific gene 8 protein [Bos taurus].
Length = 116
Score = 214 bits (544), Expect = 1e-55
Identities = 98/113 (86%), Positives = 102/113 (90%), Gaps = 2/113 (1%)
Frame = +2
Query: 152 AQAPVVIVTQPGGGS--IPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC 325
A +PVVIVTQPG GS PQ SNWQTGLCDCFSDCGVCLCG FCF+CLA QVASD+NECC
Sbjct: 4 ASSPVVIVTQPGVGSGPAPQNSNWQTGLCDCFSDCGVCLCGTFCFTCLACQVASDMNECC 63
Query: 326 LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
LCGTSVAMRTLYRTRYGIPGSICDDFMVT CCP+CSLCQIKRDINRRRA TF
Sbjct: 64 LCGTSVAMRTLYRTRYGIPGSICDDFMVTHCCPLCSLCQIKRDINRRRANRTF 116
>ref|NP_001020496.1| placenta-specific 8 [Bos taurus].
Length = 109
Score = 140 bits (353), Expect = 1e-33
Identities = 62/104 (59%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Frame = +2
Query: 170 IVTQPGGGS-IPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECCLCGTSVA 346
+V+QPG S + +S+WQTG+ DCF D G+CLCG CL+ Q+ASD+NECCL G+SVA
Sbjct: 4 VVSQPGYSSAVSASSDWQTGIFDCFDDIGICLCGALFPLCLSCQIASDMNECCLWGSSVA 63
Query: 347 MRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMH 478
MRT+YRTRYGIPGSIC D + P+C+LCQ+KRDI +R+AM+
Sbjct: 64 MRTMYRTRYGIPGSICKDCLCLTFLPLCALCQLKRDIEKRKAMN 107
>ref|NP_001069010.1| cornifelin [Bos taurus].
Length = 111
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Frame = +2
Query: 170 IVTQPGGGSI---PQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----L 328
+ +QP S Q S+W TGL DC +D VCLCG F CLA +++ D ECC L
Sbjct: 5 VTSQPQSASTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCTPYL 64
Query: 329 CGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
G ++RT R RY I GSI D+ C C+LCQ+ R++ R
Sbjct: 65 PGGLHSLRTGMRERYRIQGSIGKDWAALTFCLPCALCQMARELKIR 110
>ref|XP_001250422.2| PREDICTED: cornifelin-like [Bos taurus].
Length = 111
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Frame = +2
Query: 170 IVTQPGGGSI---PQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----L 328
+ +QP S Q S+W TGL DC +D VCLCG F CLA +++ D ECC L
Sbjct: 5 VTSQPQSASTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCTPYL 64
Query: 329 CGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
G ++RT R RY I GSI D+ C C+LCQ+ R++ R
Sbjct: 65 PGGLHSLRTGMRERYRIQGSIGKDWAALTFCLPCALCQMARELKIR 110
>ref|NP_001180114.1| PLAC8-like protein 1 [Bos taurus].
Length = 179
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Frame = +2
Query: 140 SKMQAQAPV-VIVTQPGGGSIPQTS---------NWQTGLCDCFSDCGVCLCGIFCFSCL 289
S +++ AP +V QP G+ +T+ +W TGL D +C CG+FC CL
Sbjct: 39 SNLRSCAPAQAVVKQPVRGASSRTAITAIVQTGGDWSTGLFSVCRDRRICFCGLFCPMCL 98
Query: 290 AVQVASDLNEC----CLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDI 457
+A EC L G++ A+R R R+ I G++C+D++ CC CS+CQ+ R++
Sbjct: 99 ECDIARHYGECFCWPLLPGSTFALRIGTRERHKIRGTLCEDWLAVYCCWPCSICQVAREL 158
Query: 458 NRR 466
R
Sbjct: 159 KVR 161
>ref|XP_002689324.1| PREDICTED: PLAC8-like 1-like [Bos taurus].
Length = 179
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Frame = +2
Query: 140 SKMQAQAPV-VIVTQPGGGSIPQTS---------NWQTGLCDCFSDCGVCLCGIFCFSCL 289
S +++ AP +V QP G+ +T+ +W TGL D +C CG+FC CL
Sbjct: 39 SNLRSCAPAQAVVKQPVRGASSRTAITAIVQTGGDWSTGLFSVCRDRRICFCGLFCPMCL 98
Query: 290 AVQVASDLNEC----CLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDI 457
+A EC L G++ A+R R R+ I G++C+D++ CC CS+CQ+ R++
Sbjct: 99 ECDIARHYGECFCWPLLPGSTFALRIGTRERHKIRGTLCEDWLAVYCCWPCSICQVAREL 158
Query: 458 NRR 466
R
Sbjct: 159 KVR 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,301,397
Number of extensions: 703657
Number of successful extensions: 1754
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 188
Effective length of database: 14,339,486
Effective search space: 2695823368
Effective search space used: 2695823368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008369
(869 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850879.1| PREDICTED: similar to Placenta-specific gene 8 ... 152 4e-37
Alignment gi|XP_855264.1| PREDICTED: similar to cornifelin [Canis familia... 80 2e-15
>ref|XP_850879.1| PREDICTED: similar to Placenta-specific gene 8 protein (C15
protein) [Canis familiaris].
Length = 110
Score = 152 bits (384), Expect = 4e-37
Identities = 67/107 (62%), Positives = 84/107 (78%), Gaps = 2/107 (1%)
Frame = +2
Query: 170 IVTQPGGGSIPQ--TSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECCLCGTSV 343
+V+QPG G+ S+WQTG+ DCF D G+CLCG FC CL+ Q+ASD+NECCLCG SV
Sbjct: 4 VVSQPGYGTAGSMMNSDWQTGMFDCFDDLGICLCGAFCPLCLSCQIASDMNECCLCGASV 63
Query: 344 AMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
AMRTLYRTR+GIPGSI DF+ C P+C+LCQ+KRDI +R+AM+ F
Sbjct: 64 AMRTLYRTRFGIPGSIFSDFLWLGCFPLCTLCQLKRDIEKRKAMNAF 110
>ref|XP_855264.1| PREDICTED: similar to cornifelin [Canis familiaris].
Length = 236
Score = 80.1 bits (196), Expect = 2e-15
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D VCLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 144 QLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRER 203
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 204 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 235
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,344,306
Number of extensions: 711129
Number of successful extensions: 1661
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1658
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 187
Effective length of database: 15,474,232
Effective search space: 2893681384
Effective search space used: 2893681384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008369
(869 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129401.1| PREDICTED: placenta-specific gene 8 protein-... 248 2e-66
Alignment gi|XP_003129400.1| PREDICTED: placenta-specific gene 8 protein-... 248 2e-66
Alignment gi|XP_003129399.1| PREDICTED: placenta-specific gene 8 protein-... 139 2e-33
Alignment gi|XP_003357150.1| PREDICTED: placenta-specific gene 8 protein-... 137 8e-33
Alignment gi|XP_003127210.1| PREDICTED: cornifelin-like isoform 3 [Sus sc... 80 2e-15
Alignment gi|XP_003127209.2| PREDICTED: cornifelin-like isoform 2 [Sus sc... 80 2e-15
Alignment gi|XP_003127208.1| PREDICTED: cornifelin-like isoform 1 [Sus sc... 80 2e-15
Alignment gi|XP_003124115.1| PREDICTED: PLAC8-like protein 1-like [Sus sc... 74 1e-13
>ref|XP_003129401.1| PREDICTED: placenta-specific gene 8 protein-like isoform 2 [Sus
scrofa].
Length = 113
Score = 248 bits (634), Expect = 2e-66
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +2
Query: 146 MQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC 325
MQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC
Sbjct: 1 MQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC 60
Query: 326 LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF
Sbjct: 61 LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 113
>ref|XP_003129400.1| PREDICTED: placenta-specific gene 8 protein-like isoform 1 [Sus
scrofa].
Length = 113
Score = 248 bits (634), Expect = 2e-66
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +2
Query: 146 MQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC 325
MQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC
Sbjct: 1 MQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC 60
Query: 326 LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF
Sbjct: 61 LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 113
>ref|XP_003129399.1| PREDICTED: placenta-specific gene 8 protein-like isoform 1 [Sus
scrofa].
Length = 153
Score = 139 bits (350), Expect = 2e-33
Identities = 63/114 (55%), Positives = 81/114 (71%)
Frame = +2
Query: 134 PASKMQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDL 313
P++ + PVV + G G S+WQ+G+ DC D G+C+CG F CL+ Q+ASD+
Sbjct: 22 PSNSVLKMNPVVSQPRYGAGGTA-VSDWQSGVFDCCDDMGICICGTFFPLCLSCQIASDM 80
Query: 314 NECCLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAM 475
NECCLCG SVAMRT+YRTRYGIPGSI DF+ C P C+LCQ+KRDI +R+AM
Sbjct: 81 NECCLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM 134
>ref|XP_003357150.1| PREDICTED: placenta-specific gene 8 protein-like isoform 2 [Sus
scrofa].
Length = 125
Score = 137 bits (345), Expect = 8e-33
Identities = 61/103 (59%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Frame = +2
Query: 170 IVTQPG-GGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECCLCGTSVA 346
+V+QP G S+WQ+G+ DC D G+C+CG F CL+ Q+ASD+NECCLCG SVA
Sbjct: 4 VVSQPRYGAGGTAVSDWQSGVFDCCDDMGICICGTFFPLCLSCQIASDMNECCLCGASVA 63
Query: 347 MRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAM 475
MRT+YRTRYGIPGSI DF+ C P C+LCQ+KRDI +R+AM
Sbjct: 64 MRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM 106
>ref|XP_003127210.1| PREDICTED: cornifelin-like isoform 3 [Sus scrofa].
Length = 111
Score = 79.7 bits (195), Expect = 2e-15
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D +CLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 19 QLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRER 78
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 79 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 110
>ref|XP_003127209.2| PREDICTED: cornifelin-like isoform 2 [Sus scrofa].
Length = 111
Score = 79.7 bits (195), Expect = 2e-15
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D +CLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 19 QLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRER 78
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 79 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 110
>ref|XP_003127208.1| PREDICTED: cornifelin-like isoform 1 [Sus scrofa].
Length = 111
Score = 79.7 bits (195), Expect = 2e-15
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D +CLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 19 QLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRER 78
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 79 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 110
>ref|XP_003124115.1| PREDICTED: PLAC8-like protein 1-like [Sus scrofa].
Length = 178
Score = 73.6 bits (179), Expect = 1e-13
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Frame = +2
Query: 134 PASKMQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDL 313
P + + V Q GG +W TGL D +C CG+FC CL +A
Sbjct: 53 PVRGASGRTTITAVVQTGG-------DWSTGLFSVCRDRRICFCGLFCPLCLECDIARHY 105
Query: 314 NEC----CLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
EC L G++ A+RT R R+ I G++C+D++ CC S+CQ+ R++ R
Sbjct: 106 GECFCWPLLPGSTFALRTGTRERHKIRGTLCEDWLAVHCCWPFSICQVARELKLR 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,762,967
Number of extensions: 446430
Number of successful extensions: 1123
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 8
Length of query: 289
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,904,026
Effective search space: 1700668966
Effective search space used: 1700668966
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008369
(869 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_631937.1| placenta-specific gene 8 protein [Mus musculus]. 205 4e-53
Alignment gi|NP_001074844.1| cornifelin isoform 2 [Mus musculus]. 80 2e-15
Alignment gi|NP_082495.1| cornifelin isoform 1 [Mus musculus]. 80 2e-15
Alignment gi|NP_081348.1| PLAC8-like protein 1 [Mus musculus]. 69 5e-12
>ref|NP_631937.1| placenta-specific gene 8 protein [Mus musculus].
Length = 112
Score = 205 bits (521), Expect = 4e-53
Identities = 90/111 (81%), Positives = 99/111 (89%)
Frame = +2
Query: 152 AQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECCLC 331
AQAP VIVTQPG PQ SNWQT LCDCFSDCGVCLCG FCF+CL QVA+D+NECCLC
Sbjct: 2 AQAPTVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECCLC 61
Query: 332 GTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
GT+VAMRTLYRTRYGIPGSICDD+MVTL CP+CS+CQ+KRDINRRRAM+ F
Sbjct: 62 GTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINRRRAMNAF 112
>ref|NP_001074844.1| cornifelin isoform 2 [Mus musculus].
Length = 111
Score = 80.1 bits (196), Expect = 2e-15
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D VCLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 19 QLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRER 78
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 79 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 110
>ref|NP_082495.1| cornifelin isoform 1 [Mus musculus].
Length = 124
Score = 80.1 bits (196), Expect = 2e-15
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D VCLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 32 QLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRER 91
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 92 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 123
>ref|NP_081348.1| PLAC8-like protein 1 [Mus musculus].
Length = 177
Score = 68.9 bits (167), Expect = 5e-12
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Frame = +2
Query: 140 SKMQAQAPV-VIVTQPGGGSIPQTS---------NWQTGLCDCFSDCGVCLCGIFCFSCL 289
S +++ P V+V QP G+I +T+ +W TGL D +C G+ C CL
Sbjct: 37 SNLRSHVPARVVVKQPIRGAIGRTTVAAIVQTGGDWSTGLFSVCRDRKICFWGLLCPMCL 96
Query: 290 AVQVASDLNECC----LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDI 457
+A EC L G++ A+R R R+ I G++C+D +V CC S+CQ+ R++
Sbjct: 97 ECDIARHYGECLCWPLLPGSTFALRIGTRERHRIQGTLCEDCVVVHCCWPFSICQVAREL 156
Query: 458 NRR 466
R
Sbjct: 157 KMR 159
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,727,097
Number of extensions: 616235
Number of successful extensions: 1645
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1639
Number of HSP's successfully gapped: 4
Length of query: 289
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 189
Effective length of database: 12,613,959
Effective search space: 2384038251
Effective search space used: 2384038251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008369
(869 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124188.1| placenta-specific gene 8 protein [Homo sapie... 214 6e-56
Alignment gi|NP_057703.1| placenta-specific gene 8 protein [Homo sapiens]. 214 6e-56
Alignment gi|NP_001124187.1| placenta-specific gene 8 protein [Homo sapie... 214 6e-56
Alignment gi|NP_115877.2| cornifelin [Homo sapiens]. 80 3e-15
Alignment gi|NP_001025040.1| PLAC8-like protein 1 [Homo sapiens]. 74 1e-13
>ref|NP_001124188.1| placenta-specific gene 8 protein [Homo sapiens].
Length = 115
Score = 214 bits (546), Expect = 6e-56
Identities = 96/115 (83%), Positives = 102/115 (88%), Gaps = 2/115 (1%)
Frame = +2
Query: 146 MQAQAPVVIVTQPG--GGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNE 319
MQAQAPVV+VTQPG G PQ SNWQTG+CDCFSDCGVCLCG FCF CL QVA+D+NE
Sbjct: 1 MQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNE 60
Query: 320 CCLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
CCLCGTSVAMRTLYRTRYGIPGSICDD+M TLCCP C+LCQIKRDINRRRAM TF
Sbjct: 61 CCLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF 115
>ref|NP_057703.1| placenta-specific gene 8 protein [Homo sapiens].
Length = 115
Score = 214 bits (546), Expect = 6e-56
Identities = 96/115 (83%), Positives = 102/115 (88%), Gaps = 2/115 (1%)
Frame = +2
Query: 146 MQAQAPVVIVTQPG--GGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNE 319
MQAQAPVV+VTQPG G PQ SNWQTG+CDCFSDCGVCLCG FCF CL QVA+D+NE
Sbjct: 1 MQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNE 60
Query: 320 CCLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
CCLCGTSVAMRTLYRTRYGIPGSICDD+M TLCCP C+LCQIKRDINRRRAM TF
Sbjct: 61 CCLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF 115
>ref|NP_001124187.1| placenta-specific gene 8 protein [Homo sapiens].
Length = 115
Score = 214 bits (546), Expect = 6e-56
Identities = 96/115 (83%), Positives = 102/115 (88%), Gaps = 2/115 (1%)
Frame = +2
Query: 146 MQAQAPVVIVTQPG--GGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNE 319
MQAQAPVV+VTQPG G PQ SNWQTG+CDCFSDCGVCLCG FCF CL QVA+D+NE
Sbjct: 1 MQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNE 60
Query: 320 CCLCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 484
CCLCGTSVAMRTLYRTRYGIPGSICDD+M TLCCP C+LCQIKRDINRRRAM TF
Sbjct: 61 CCLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF 115
>ref|NP_115877.2| cornifelin [Homo sapiens].
Length = 112
Score = 79.7 bits (195), Expect = 3e-15
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 QTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECC----LCGTSVAMRTLYRTR 370
Q S+W TGL DC +D VCLCG F CLA +++ D ECC L G ++RT R R
Sbjct: 20 QLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSIRTGMRER 79
Query: 371 YGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
Y I GS+ D+ C C+LCQ+ R++ R
Sbjct: 80 YHIQGSVGHDWAALTFCLPCALCQMARELKIR 111
>ref|NP_001025040.1| PLAC8-like protein 1 [Homo sapiens].
Length = 177
Score = 74.3 bits (181), Expect = 1e-13
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Frame = +2
Query: 134 PASKMQAQAPVVIVTQPGGGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDL 313
P + + + Q GGG W TGL D +C CG+FC CL +A
Sbjct: 52 PVRGASGRTTITAIVQTGGG-------WSTGLFSVCRDRRICFCGLFCPMCLECDIARHY 104
Query: 314 NECC----LCGTSVAMRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRR 466
EC L G++ A+R R R+ I G++C+D++ CC S+CQ+ R++ R
Sbjct: 105 GECLCWPLLPGSTFALRIGTRERHKIQGTLCEDWLAVHCCWAFSICQVARELKMR 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,028,455
Number of extensions: 713746
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1742
Number of HSP's successfully gapped: 5
Length of query: 289
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 187
Effective length of database: 14,934,836
Effective search space: 2792814332
Effective search space used: 2792814332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008369
(869 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 589 e-165
>Sscrofa_Chr08
|| Length = 148491826
Score = 589 bits (297), Expect = e-165
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 497 ggtaaggagctccattttttcccttctgcaagcttgctcttgacctgatgaagagctctt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144573592 ggtaaggagctccattttttcccttctgcaagcttgctcttgacctgatgaagagctctt 144573651
Query: 557 aggaagcaacttaaatcagctacacacctcttcagcttctctactcttggcagctgaaat 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144573652 aggaagcaacttaaatcagctacacacctcttcagcttctctactcttggcagctgaaat 144573711
Query: 617 gtaattgatatatttaatcacaataagaaaatagaactttgatttattctaaaagaatac 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144573712 gtaattgatatatttaatcacaataagaaaatagaactttgatttattctaaaagaatac 144573771
Query: 677 tgtcttttagttttgctaaatgctccagctatgtttctccttactgttaaattttcttgt 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144573772 tgtcttttagttttgctaaatgctccagctatgtttctccttactgttaaattttcttgt 144573831
Query: 737 ttatgaatcttatattacatttaaaatgtacaccaaataaaagattttactaacatg 793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144573832 ttatgaatcttatattacatttaaaatgtacaccaaataaaagattttactaacatg 144573888
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 116 accacagccacttaagatcctgcatccaaaatgcaagctcaggctccagtggtcattgtg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144560771 accacagccacttaagatcctgcatccaaaatgcaagctcaggctccagtggtcattgtg 144560830
Query: 176 actcagcccggaggtggctccatccctcaaacctccaactggcagacaggcttgtgcgat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144560831 actcagcccggaggtggctccatccctcaaacctccaactggcagacaggcttgtgcgat 144560890
Query: 236 tgcttcagcgactgcggcgtctgt 259
||||||||||||||||||||||||
Sbjct: 144560891 tgcttcagcgactgcggcgtctgt 144560914
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 258 gtctctgtggcatattttgcttctcgtgcctggcggttcaagttgcatctgacctgaacg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144563301 gtctctgtggcatattttgcttctcgtgcctggcggttcaagttgcatctgacctgaacg 144563360
Query: 318 aatgctgcctgtgtggaacgagtgtcgcaatgcggaccctctacaggactcgctacggca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144563361 aatgctgcctgtgtggaacgagtgtcgcaatgcggaccctctacaggactcgctacggca 144563420
Query: 378 tcccgg 383
||||||
Sbjct: 144563421 tcccgg 144563426
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 382 ggggtccatttgtgatgactttatggtgacgctctgctgccctatgtgttctctttgcca 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144569042 ggggtccatttgtgatgactttatggtgacgctctgctgccctatgtgttctctttgcca 144569101
Query: 442 aatcaagagagacatcaacagaaggagagccatgcatacgttctaaacagctgatggta 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144569102 aatcaagagagacatcaacagaaggagagccatgcatacgttctaaacagctgatggta 144569160
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 2 attacaggctgcgatgaaagtatgctggcttctctctctccagcatcttgcacttctagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144545643 attacaggctgcgatgaaagtatgctggcttctctctctccagcatcttgcacttctagt 144545702
Query: 62 gagaatctctctcgagccacaagacacagcctgcccagaacctctttcttaact 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144545703 gagaatctctctcgagccacaagacacagcctgcccagaacctctttcttaact 144545756
Score = 61.9 bits (31), Expect = 5e-07
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 305 tctgacctgaacgaatgctgcctgtgtggaacgagtgtcgcaatgcggaccctctacagg 364
|||||| ||||||||||||||||||| ||| | || ||||| ||| ||||| | ||| ||
Sbjct: 144524798 tctgacatgaacgaatgctgcctgtgcggagccagcgtcgccatgaggaccatgtaccgg 144524857
Query: 365 actcgctacggcatcccgg 383
|| || |||||||||||||
Sbjct: 144524858 acccggtacggcatcccgg 144524876
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,734,253
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 7
Length of query: 869
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 848
Effective length of database: 2,808,413,156
Effective search space: 2381534356288
Effective search space used: 2381534356288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)