Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008370
(1263 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029725.1| pin2-interacting protein X1 [Bos taurus]. 357 9e-99
Alignment gi|NP_001069000.2| angiogenic factor VG5Q [Bos taurus]. 50 4e-06
Alignment gi|XP_002690464.1| PREDICTED: angiogenic factor with G patch an... 50 4e-06
Alignment gi|XP_001789407.1| PREDICTED: angiogenic factor VG5Q [Bos tauru... 50 4e-06
>ref|NP_001029725.1| pin2-interacting protein X1 [Bos taurus].
Length = 309
Score = 357 bits (917), Expect = 9e-99
Identities = 189/302 (62%), Positives = 200/302 (66%)
Frame = +2
Query: 131 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 310
MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
Sbjct: 1 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 60
Query: 311 KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNXXXXXXXXXXXXXXX 490
KNNHLGLGATINNEDNWIAHQDDFNQLLA LNTCHGQETADS DN
Sbjct: 61 KNNHLGLGATINNEDNWIAHQDDFNQLLAQLNTCHGQETADSPDNKEKKSFSLEEKSKIS 120
Query: 491 XNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKKXXXXXXXXXXXXXXXXXXXXXAFTIH 670
NRVHYMKFTKGKDLSSRS+TDLDCIFGKRQK+ AFTIH
Sbjct: 121 KNRVHYMKFTKGKDLSSRSQTDLDCIFGKRQKRTPEDHPSLSATEETDTSTTTTSAFTIH 180
Query: 671 EYFAKRMAERKNKLQDTAEGPGVSETPLQSXXXXXXXXXXXXXSVENGTQPKAKKKRARA 850
EYFA+RMAERK+K Q A GP SETP++ +VEN QPKAKKKR +
Sbjct: 181 EYFARRMAERKSKAQGMAAGPEASETPVERKRGKKRKKEAKDKNVENHIQPKAKKKRNQV 240
Query: 851 EWQLGDPGRDENSGVSAEDREGSREVLSDQDFXXXXXXXXXXXXXXXXXXXXXXGMLEET 1030
E +LGDP DEN G AE EG L +QD L+ET
Sbjct: 241 ECELGDPRWDENPGAPAEAGEGHVGPLDNQDSPPKPKKRKEKEKGAKQVEAAVDSTLDET 300
Query: 1031 PV 1036
PV
Sbjct: 301 PV 302
>ref|NP_001069000.2| angiogenic factor VG5Q [Bos taurus].
Length = 712
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +2
Query: 206 DSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
DS G++MLEKMGW KG+GLG G I++Q++ H GLG
Sbjct: 617 DSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 659
>ref|XP_002690464.1| PREDICTED: angiogenic factor with G patch and FHA domains 1 [Bos
taurus].
Length = 712
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +2
Query: 206 DSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
DS G++MLEKMGW KG+GLG G I++Q++ H GLG
Sbjct: 617 DSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 659
>ref|XP_001789407.1| PREDICTED: angiogenic factor VG5Q [Bos taurus].
Length = 712
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +2
Query: 206 DSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
DS G++MLEKMGW KG+GLG G I++Q++ H GLG
Sbjct: 617 DSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 659
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,576,383
Number of extensions: 1087007
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3488
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008370
(1263 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849859.1| PREDICTED: similar to Pin2-interacting protein ... 347 1e-95
Alignment gi|XP_536317.2| PREDICTED: similar to angiogenic factor VG5Q [C... 50 5e-06
>ref|XP_849859.1| PREDICTED: similar to Pin2-interacting protein X1 (TRF1-interacting
protein 1) (Liver-related putative tumor suppressor)
(67-11-3 protein) [Canis familiaris].
Length = 314
Score = 347 bits (890), Expect = 1e-95
Identities = 182/262 (69%), Positives = 188/262 (71%), Gaps = 1/262 (0%)
Frame = +2
Query: 131 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 310
MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
Sbjct: 1 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 60
Query: 311 KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNXXXXXXXXXXXXXXX 490
KNNHLGLGATINNEDNWIAHQDDFNQLLA LNTCHGQET DSSDN
Sbjct: 61 KNNHLGLGATINNEDNWIAHQDDFNQLLADLNTCHGQETTDSSDNKEKKTFSLEEKSKIS 120
Query: 491 XNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKK-XXXXXXXXXXXXXXXXXXXXXAFTI 667
NRVHYMKFTKGKDLS RSKTDLDCIFGKRQ KK AFTI
Sbjct: 121 KNRVHYMKFTKGKDLSCRSKTDLDCIFGKRQSKKTPEDDSSPATPDGNSSSTTTTSAFTI 180
Query: 668 HEYFAKRMAERKNKLQDTAEGPGVSETPLQSXXXXXXXXXXXXXSVENGTQPKAKKKRAR 847
EYFAKRMAE KNK Q A GP +ET ++ VE T PKAKKKR +
Sbjct: 181 QEYFAKRMAELKNKPQVIAAGPDFAETQMERKNGKKRKKEAKDRKVETYTVPKAKKKRHQ 240
Query: 848 AEWQLGDPGRDENSGVSAEDRE 913
EWQLGDP D+NSGVSAE+ E
Sbjct: 241 VEWQLGDPCWDKNSGVSAENGE 262
>ref|XP_536317.2| PREDICTED: similar to angiogenic factor VG5Q [Canis familiaris].
Length = 711
Score = 50.1 bits (118), Expect = 5e-06
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 179 PRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
P + + DS G++MLEKMGW KG+GLG G I++Q++ H GLG
Sbjct: 607 PASVHFEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKIPIQLQLRRTHAGLG 658
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,386,357
Number of extensions: 1112806
Number of successful extensions: 3580
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3568
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008370
(1263 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359101.1| PREDICTED: PIN2/TERF1-interacting telomerase... 284 8e-77
Alignment gi|XP_003359102.1| PREDICTED: PIN2/TERF1-interacting telomerase... 177 1e-44
Alignment gi|XP_003123763.1| PREDICTED: angiogenic factor with G patch an... 51 2e-06
>ref|XP_003359101.1| PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1-like [Sus
scrofa].
Length = 158
Score = 284 bits (726), Expect = 8e-77
Identities = 138/154 (89%), Positives = 138/154 (89%)
Frame = +2
Query: 131 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 310
MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
Sbjct: 1 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 60
Query: 311 KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNXXXXXXXXXXXXXXX 490
KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDN
Sbjct: 61 KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKIS 120
Query: 491 XNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKK 592
NRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKK
Sbjct: 121 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKK 154
>ref|XP_003359102.1| PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Sus
scrofa].
Length = 167
Score = 177 bits (448), Expect = 1e-44
Identities = 95/137 (69%), Positives = 95/137 (69%)
Frame = +2
Query: 656 AFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSXXXXXXXXXXXXXSVENGTQPKAKK 835
AFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQS SVENGTQPKAKK
Sbjct: 31 AFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSKRGKKRKKEAKDKSVENGTQPKAKK 90
Query: 836 KRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDFXXXXXXXXXXXXXXXXXXXXXXG 1015
KRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDF G
Sbjct: 91 KRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDFPLKPRRRKEKKKLPKPVEAAVAG 150
Query: 1016 MLEETPVXXXXXXXDSE 1066
MLEETPV DSE
Sbjct: 151 MLEETPVKKKKKKKDSE 167
>ref|XP_003123763.1| PREDICTED: angiogenic factor with G patch and FHA domains 1 [Sus
scrofa].
Length = 714
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 179 PRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
P + + DS G++MLEKMGW KG+GLG G I++Q++ H GLG
Sbjct: 610 PASVHFEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 661
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,091,041
Number of extensions: 700361
Number of successful extensions: 2330
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2324
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008370
(1263 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082504.1| PIN2/TERF1-interacting telomerase inhibitor 1 [... 316 2e-86
Alignment gi|NP_001104279.1| G patch domain-containing protein 4 [Mus mus... 49 8e-06
Alignment gi|NP_079939.3| G patch domain-containing protein 4 [Mus muscul... 49 8e-06
Alignment gi|NP_079906.2| angiogenic factor with G patch and FHA domains ... 49 8e-06
>ref|NP_082504.1| PIN2/TERF1-interacting telomerase inhibitor 1 [Mus musculus].
Length = 332
Score = 316 bits (810), Expect = 2e-86
Identities = 175/292 (59%), Positives = 186/292 (63%), Gaps = 21/292 (7%)
Frame = +2
Query: 131 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 310
MSMLAERRRKQKW VDPRNTAWSNDDSKFGQ+MLEKMGWSKGKGLGAQEQGAT+HIKV+V
Sbjct: 1 MSMLAERRRKQKWTVDPRNTAWSNDDSKFGQKMLEKMGWSKGKGLGAQEQGATEHIKVKV 60
Query: 311 KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNXXXXXXXXXXXXXXX 490
KNNHLGLGAT NNEDNWIAHQDDFNQLLAALNTCHGQETADSSD
Sbjct: 61 KNNHLGLGATNNNEDNWIAHQDDFNQLLAALNTCHGQETADSSDKKEKKSFSLEEKSKIS 120
Query: 491 XNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKK-----XXXXXXXXXXXXXXXXXXXXX 655
NRVHYMKFTKGKDLSSRS+TDLDCIFGKR+ KK
Sbjct: 121 KNRVHYMKFTKGKDLSSRSETDLDCIFGKRRNKKLAQDGCSNSSADEVNTSLTTTTTTTS 180
Query: 656 AFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSXXXXXXXXXXXXXSVENGTQPKAK- 832
AFTI EYFAKRMA+ KNK Q +A G +SETP++ VEN Q KAK
Sbjct: 181 AFTIQEYFAKRMAQLKNKPQASAPGSDLSETPVERKKGKKKNKEAADTDVENSPQHKAKR 240
Query: 833 ---------------KKRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQD 943
KKR RAE Q G P DE S S E E + QD
Sbjct: 241 HKKKKRVEAERGPVAKKRDRAELQPGGPSEDECSDASVEAAEDCVQTPDIQD 292
>ref|NP_001104279.1| G patch domain-containing protein 4 [Mus musculus].
Length = 415
Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +2
Query: 212 KFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNE--DNWIAHQDDFN 385
KF + L K GW++GKGLG +E G T +KV +K ++ G+G E D+W D FN
Sbjct: 13 KFAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHW--WSDLFN 70
Query: 386 QLLAALNTCHGQE 424
+ A+L G++
Sbjct: 71 KTAASLVVDSGKD 83
>ref|NP_079939.3| G patch domain-containing protein 4 [Mus musculus].
Length = 415
Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +2
Query: 212 KFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNE--DNWIAHQDDFN 385
KF + L K GW++GKGLG +E G T +KV +K ++ G+G E D+W D FN
Sbjct: 13 KFAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHW--WSDLFN 70
Query: 386 QLLAALNTCHGQE 424
+ A+L G++
Sbjct: 71 KTAASLVVDSGKD 83
>ref|NP_079906.2| angiogenic factor with G patch and FHA domains 1 [Mus musculus].
Length = 711
Score = 48.9 bits (115), Expect = 8e-06
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 206 DSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
DS G++MLEKMGW +G+GLG G I++Q++ H GLG
Sbjct: 616 DSNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLG 658
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,893,601
Number of extensions: 929050
Number of successful extensions: 2924
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2920
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008370
(1263 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060354.4| PIN2/TERF1-interacting telomerase inhibitor 1 [... 314 1e-85
Alignment gi|NP_060516.2| angiogenic factor with G patch and FHA domains ... 50 4e-06
>ref|NP_060354.4| PIN2/TERF1-interacting telomerase inhibitor 1 [Homo sapiens].
Length = 328
Score = 314 bits (804), Expect = 1e-85
Identities = 175/290 (60%), Positives = 185/290 (63%), Gaps = 18/290 (6%)
Frame = +2
Query: 131 MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 310
MSMLAERRRKQKWAVDP+NTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
Sbjct: 1 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 60
Query: 311 KNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNXXXXXXXXXXXXXXX 490
KNNHLGLGATINNEDNWIAHQDDFNQLLA LNTCHGQET DSSD
Sbjct: 61 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS 120
Query: 491 XNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKKXXXXXXXXXXXXXXXXXXXXXAFTIH 670
NRVHYMKFTKGKDLSSRSKTDLDCIFGKRQ KK AFTI
Sbjct: 121 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKK-TPEGDASPSTPEENETTTTSAFTIQ 179
Query: 671 EYFAKRMAERKNKLQDTAEGPGVSETPLQSXXXXXXXXXXXXXSVENGTQPK-------- 826
EYFAKRMA KNK Q G +SET ++ VE+ QPK
Sbjct: 180 EYFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGK 239
Query: 827 ----------AKKKRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDF 946
AKKK A AE QL P D++S SA+D + +DF
Sbjct: 240 PERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDF 289
>ref|NP_060516.2| angiogenic factor with G patch and FHA domains 1 [Homo sapiens].
Length = 714
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +2
Query: 206 DSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLG 334
DS G++MLEKMGW KG+GLG G I++Q++ H GLG
Sbjct: 619 DSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLG 661
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,672,846
Number of extensions: 1103021
Number of successful extensions: 3450
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3446
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008370
(1263 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 747 0.0
Sscrofa_Chr03 70 3e-09
>Sscrofa_Chr14
|| Length = 153851969
Score = 747 bits (377), Expect = 0.0
Identities = 428/453 (94%)
Strand = Plus / Minus
Query: 811 tggcacccagcccaaggccaagaagaagagagcccgagctgagtggcagctcggagaccc 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316214 tggcacccagcccaaggccaagaagaagagagcccgagctgagtggcagctcggagaccc 15316155
Query: 871 tggcagggacgagaattctggtgtctccgctgaggacagagagggtagcagggaggtact 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316154 tggcagggacgagaattctggtgtctccgctgaggacagagagggtagcagggaggtact 15316095
Query: 931 cagtgaccaggactttcccctgaagcccagaagaaggaaagaaaagaaaaagctaccaaa 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316094 cagtgaccaggactttcccctgaagcccagaagaaggaaagaaaagaaaaagctaccaaa 15316035
Query: 991 gccggttgaggcagcagtggccggtatgctagaggaaacgccagtnnnnnnnnnnnnnnn 1050
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316034 gccggttgaggcagcagtggccggtatgctagaggaaacgccagtgaaaaagaagaagaa 15315975
Query: 1051 nnnnnnnnnttctgagtaaatctctgagccagggcctctcgacccctctgccaccggggc 1110
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15315974 aaagaaagattctgagtaaatctctgagccagggcctcccgacccctctgccaccggggc 15315915
Query: 1111 tgccgcgccagctcctcgggctcagtcagcagggctcccaggcgcacagtccccgacatg 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15315914 tgccgcgccagctcctcgggctcagtcagcagggctcccaggcgcacagtccccgacatg 15315855
Query: 1171 cccggcccctgccgtgtctcgccctcgccacattgtcccacatcccattcccagagctgc 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15315854 cccggcccctgccgtgtctcgccctcgccacattgtcccacatcccattcccagagctgc 15315795
Query: 1231 ttaatgttccaagtcatggctctcataaacagt 1263
|||||||||||||||||||||||||||||||||
Sbjct: 15315794 ttaatgttccaagtcatggctctcataaacagt 15315762
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 600 aggagacgtccagccctgccactccagaggggactgaaaccaccacgaccaccagtgcct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316425 aggagacgtccagccctgccactccagaggggactgaaaccaccacgaccaccagtgcct 15316366
Query: 660 tcaccatccatgagtactttgccaagcgcatggcagagcgaaagaacaagctgcaggaca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316365 tcaccatccatgagtactttgccaagcgcatggcagagcgaaagaacaagctgcaggaca 15316306
Query: 720 ccgctgaggggccaggtgtttcagagacccccctgcagagc 760
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 15316305 ccgctgaggggccaggtgtttcagagacccccctgcagagc 15316265
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 2 agtgcgcgccctcgccgctgcagttcgcccggcgtgtgagtcctgtggttctaggttctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15483039 agtgcgcgccctcgccgctgcagttcgcccggcgtgtgagtcctgtggttctaggttctc 15482980
Query: 62 agtaagtcggacgcaccggagccgaagtcgctcaggtttcgaagcccttggcgtcacagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15482979 agtaagtcggacgcaccggagccgaagtcgctcaggtttcgaagcccttggcgtcacagg 15482920
Query: 122 ctcggcgacatgtcgatgctggctgagcgt 151
||||||||||||||||||||||||||||||
Sbjct: 15482919 ctcggcgacatgtcgatgctggctgagcgt 15482890
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 150 gtcggcggaagcagaagtgggctgtggatccgagaaacactgcatggagtaatgatgact 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15477763 gtcggcggaagcagaagtgggctgtggatccgagaaacactgcatggagtaatgatgact 15477704
Query: 210 ccaagtttggccagagaatgctagagaagatgggatggtctaaaggaaagg 260
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15477703 ccaagtttggccagagaatgctagagaagatgggatggtctaaaggaaagg 15477653
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 430 agactcctcagacaacaaggaaaagaaatctttcagccttgaagagaagtccaaaatctc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15467987 agactcctcagacaacaaggaaaagaaatctttcagccttgaagagaagtccaaaatctc 15467928
Query: 490 caaaaaccgtgttcattatatgaaattcacaaaagg 525
||||||||||||||||||||||||||||||||||||
Sbjct: 15467927 caaaaaccgtgttcattatatgaaattcacaaaagg 15467892
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 258 agggtttaggggctcaggagcaaggagccacagatcatatcaaagttcaagttaaaaaca 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15475697 agggtttaggggctcaggagcaaggagccacagatcatatcaaagttcaagttaaaaaca 15475638
Query: 318 accacctgggacttggagctacgatcaataatgaag 353
||||||||||||||||||||||||||||||||||||
Sbjct: 15475637 accacctgggacttggagctacgatcaataatgaag 15475602
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 523 agggaaggatctctcatctcggagcaaaacagatcttgactgcatttttggaaaaaggca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15461419 agggaaggatctctcatctcggagcaaaacagatcttgactgcatttttggaaaaaggca 15461360
Query: 583 gaagaagaagactcctgagg 602
||||||||||||||||||||
Sbjct: 15461359 gaagaagaagactcctgagg 15461340
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 353 gacaactggattgctcatcaagatgattttaaccagcttctggctgcactgaacacttgc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15473216 gacaactggattgctcatcaagatgattttaaccagcttctggctgcactgaacacttgc 15473157
Query: 413 catgggcaggaaacagcag 431
|||||||||||||||||||
Sbjct: 15473156 catgggcaggaaacagcag 15473138
>Sscrofa_Chr03
|| Length = 144787322
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 934 tgaccaggactttcccctgaagcccagaagaaggaaagaaaagaaaaagctaccaaagc 992
|||||||||||||||||||||| || || ||||||||||||||||||| ||| |||||
Sbjct: 90479342 tgaccaggactttcccctgaaggacaaaacaaggaaagaaaagaaaaaggtacaaaagc 90479400
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,957,268
Number of extensions: 1518
Number of successful extensions: 1518
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1518
Number of HSP's successfully gapped: 10
Length of query: 1263
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1242
Effective length of database: 2,808,413,156
Effective search space: 3488049139752
Effective search space used: 3488049139752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)