Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008374
(1690 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007807.2| prostaglandin E synthase 3 [Bos taurus]. 323 3e-88
Alignment gi|NP_001098952.1| alanyl-tRNA editing protein Aarsd1 isoform 2... 106 7e-23
>ref|NP_001007807.2| prostaglandin E synthase 3 [Bos taurus].
Length = 160
Score = 323 bits (828), Expect = 3e-88
Identities = 151/160 (94%), Positives = 151/160 (94%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMMNNMGGDEDVDLPEVDGA EKMPDLE
Sbjct: 121 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>ref|NP_001098952.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Bos taurus].
Length = 137
Score = 106 bits (264), Expect = 7e-23
Identities = 48/114 (42%), Positives = 75/114 (65%)
Frame = +3
Query: 1014 IEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCC 1193
+EFCVEDS DV+V E ++ FSC D + NEI+ + ++ DS+ KR+ RSI C
Sbjct: 1 MEFCVEDSTDVHVLIEDHRIVFSCKN-PDGVEFYNEIEFYAKVNCKDSQDKRSGRSITCF 59
Query: 1194 LRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNM 1355
+RK + +WPRLTKE K WLSVDF+NW+DWE + + +++ + ++E++ +
Sbjct: 60 VRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGEEEVELAQVEHYAELLKKV 113
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,502,282
Number of extensions: 1614668
Number of successful extensions: 7037
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6997
Number of HSP's successfully gapped: 2
Length of query: 563
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 456
Effective length of database: 14,140,958
Effective search space: 6448276848
Effective search space used: 6448276848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008374
(1690 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848910.1| PREDICTED: similar to unactive progesterone rec... 515 e-146
Alignment gi|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familia... 127 4e-29
>ref|XP_848910.1| PREDICTED: similar to unactive progesterone receptor, 23 kD [Canis
familiaris].
Length = 500
Score = 515 bits (1326), Expect = e-146
Identities = 267/364 (73%), Positives = 273/364 (75%)
Frame = +3
Query: 354 LRPSASAFLPRLTRPFLGEIAQGAWQGG*ATNGFHREEXXXXXXXXXXXXXXXXXXXXXX 533
LRPS+ R++ G +A+ A NGF R
Sbjct: 147 LRPSSRRQHSRVSGTASGRVARRL-----AANGFLRRGGSAGAEAGTSRAGRSRRGAGPA 201
Query: 534 XXXXXXELGSPALSVDISRKPRRSPKTKSAHARRLGPGILLRHQPPPGLTTPRSHARTFI 713
ELG PALSVDISRKPRRSPKTKSAHARR GPGILLRHQPPPGLTTPRSHARTFI
Sbjct: 202 PGRIAKELGGPALSVDISRKPRRSPKTKSAHARRQGPGILLRHQPPPGLTTPRSHARTFI 261
Query: 714 LRSRAPFPTLSFSPRPEESLCPRGAFWEXXXXXXXXXXXLEGKAKRGRNRGEDARVATGE 893
LR RAP PTLS SPRPEE L PR AFW EG +R R G RVATG
Sbjct: 262 LRPRAPIPTLSSSPRPEEPLSPRSAFWGPGSSPPSP----EGSEERPRP-GRKRRVATGG 316
Query: 894 ESTAYQLPPERPAHPFARPLAPFTMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKL 1073
ESTA QLPPERPAHP ARP APFTMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKL
Sbjct: 317 ESTARQLPPERPAHPLARPPAPFTMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKL 376
Query: 1074 TFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKL 1253
TFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKL
Sbjct: 377 TFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKL 436
Query: 1254 NWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKM 1433
NWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGA EKM
Sbjct: 437 NWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKM 496
Query: 1434 PDLE 1445
PDLE
Sbjct: 497 PDLE 500
>ref|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familiaris].
Length = 543
Score = 127 bits (318), Expect = 4e-29
Identities = 61/142 (42%), Positives = 90/142 (63%), Gaps = 6/142 (4%)
Frame = +3
Query: 969 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 1148
Q A WYDR YVF+EFCVEDS DV+V E ++ FSC +D + NEI+ + ++
Sbjct: 4 QHARTLWYDRPKYVFMEFCVEDSTDVHVLIEDHRIVFSCKN-ADGVELYNEIEFYAKVNS 62
Query: 1149 NDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFD 1328
DS+ KR+ RSI C +RK + +WPRLTKE K WLSVDF+NW+DWE D + +++ +
Sbjct: 63 KDSQDKRSGRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEVELAQVE 122
Query: 1329 RFSEMMNNMG------GDEDVD 1376
++E++ + G +D+D
Sbjct: 123 HYAELLKKVSTKRPPPGMDDLD 144
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,566,456
Number of extensions: 1686896
Number of successful extensions: 7615
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7546
Number of HSP's successfully gapped: 2
Length of query: 563
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 455
Effective length of database: 15,274,216
Effective search space: 6949768280
Effective search space used: 6949768280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008374
(1690 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929448.3| PREDICTED: prostaglandin E synthase 3 isofor... 323 2e-88
Alignment gi|XP_003355505.1| PREDICTED: prostaglandin E synthase 3 isofor... 240 2e-63
Alignment gi|XP_003355506.1| PREDICTED: prostaglandin E synthase 3 isofor... 237 1e-62
Alignment gi|XP_003355504.1| PREDICTED: prostaglandin E synthase 3 isofor... 236 3e-62
>ref|XP_001929448.3| PREDICTED: prostaglandin E synthase 3 isoform 1 [Sus scrofa].
Length = 160
Score = 323 bits (828), Expect = 2e-88
Identities = 151/160 (94%), Positives = 151/160 (94%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMMNNMGGDEDVDLPEVDGA EKMPDLE
Sbjct: 121 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>ref|XP_003355505.1| PREDICTED: prostaglandin E synthase 3 isoform 3 [Sus scrofa].
Length = 130
Score = 240 bits (612), Expect = 2e-63
Identities = 121/160 (75%), Positives = 121/160 (75%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK------------------------- 95
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
MMNNMGGDEDVDLPEVDGA EKMPDLE
Sbjct: 96 -----MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 130
>ref|XP_003355506.1| PREDICTED: prostaglandin E synthase 3 isoform 4 [Sus scrofa].
Length = 127
Score = 237 bits (605), Expect = 1e-62
Identities = 118/160 (73%), Positives = 118/160 (73%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PN LNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PN---------------------------------LNWLSVDFNNWKDWEDDSDEDMSNF 87
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMMNNMGGDEDVDLPEVDGA EKMPDLE
Sbjct: 88 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 127
>ref|XP_003355504.1| PREDICTED: prostaglandin E synthase 3 isoform 2 [Sus scrofa].
Length = 128
Score = 236 bits (602), Expect = 3e-62
Identities = 119/160 (74%), Positives = 119/160 (74%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTF
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTF---------------------- 38
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 39 ----------RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 88
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMMNNMGGDEDVDLPEVDGA EKMPDLE
Sbjct: 89 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,430,115
Number of extensions: 1047061
Number of successful extensions: 4703
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4672
Number of HSP's successfully gapped: 5
Length of query: 563
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 459
Effective length of database: 8,754,644
Effective search space: 4018381596
Effective search space used: 4018381596
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008374
(1690 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062740.1| prostaglandin E synthase 3 [Mus musculus]. 319 4e-87
Alignment gi|XP_001480119.1| PREDICTED: prostaglandin E synthase 3-like [... 319 4e-87
Alignment gi|XP_001478909.1| PREDICTED: prostaglandin E synthase 3-like [... 319 4e-87
Alignment gi|NP_081141.1| hypothetical protein LOC73635 [Mus musculus]. 129 5e-30
>ref|NP_062740.1| prostaglandin E synthase 3 [Mus musculus].
Length = 160
Score = 319 bits (818), Expect = 4e-87
Identities = 149/160 (93%), Positives = 151/160 (94%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMM++MGGDEDVDLPEVDGA EKMPDLE
Sbjct: 121 DRFSEMMDHMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>ref|XP_001480119.1| PREDICTED: prostaglandin E synthase 3-like [Mus musculus].
Length = 160
Score = 319 bits (818), Expect = 4e-87
Identities = 149/160 (93%), Positives = 151/160 (94%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMM++MGGDEDVDLPEVDGA EKMPDLE
Sbjct: 121 DRFSEMMDHMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>ref|XP_001478909.1| PREDICTED: prostaglandin E synthase 3-like [Mus musculus].
Length = 160
Score = 319 bits (818), Expect = 4e-87
Identities = 149/160 (93%), Positives = 151/160 (94%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMM++MGGDEDVDLPEVDGA EKMPDLE
Sbjct: 121 DRFSEMMDHMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>ref|NP_081141.1| hypothetical protein LOC73635 [Mus musculus].
Length = 131
Score = 129 bits (325), Expect = 5e-30
Identities = 60/124 (48%), Positives = 83/124 (66%)
Frame = +3
Query: 969 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 1148
QPA WYDR YVF+EFCVEDS DV+V E ++ FSC G D + NEI+ + ++
Sbjct: 4 QPARTLWYDRPKYVFMEFCVEDSTDVSVLIEDHRVVFSCRNG-DGVELYNEIEFYAKVNS 62
Query: 1149 NDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFD 1328
DS+ KR+ RSI C +RK + +WPRLTKE K WLSVDF+NW+DWE D + +++ +
Sbjct: 63 KDSQDKRSGRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDDEVELAQVE 122
Query: 1329 RFSE 1340
++E
Sbjct: 123 HYAE 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,479,664
Number of extensions: 1359940
Number of successful extensions: 5315
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5286
Number of HSP's successfully gapped: 4
Length of query: 563
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 456
Effective length of database: 12,403,707
Effective search space: 5656090392
Effective search space used: 5656090392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008374
(1690 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006592.3| prostaglandin E synthase 3 [Homo sapiens]. 323 3e-88
Alignment gi|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1... 128 2e-29
Alignment gi|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [H... 109 9e-24
Alignment gi|NP_001136126.1| alanyl-tRNA editing protein Aarsd1 isoform 4... 85 2e-16
Alignment gi|NP_001136125.1| alanyl-tRNA editing protein Aarsd1 isoform 3... 80 4e-15
>ref|NP_006592.3| prostaglandin E synthase 3 [Homo sapiens].
Length = 160
Score = 323 bits (828), Expect = 3e-88
Identities = 151/160 (94%), Positives = 151/160 (94%)
Frame = +3
Query: 966 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 1145
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 1146 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 1325
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 1326 DRFSEMMNNMGGDEDVDLPEVDGAXXXXXXXXXEKMPDLE 1445
DRFSEMMNNMGGDEDVDLPEVDGA EKMPDLE
Sbjct: 121 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>ref|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1 [Homo sapiens].
Length = 586
Score = 128 bits (321), Expect = 2e-29
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = +3
Query: 933 HPFARPLAPFTMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKH 1112
HP A A Q A WYDR YVF+EFCVEDS DV+V E ++ FSC +D +
Sbjct: 37 HPGAG--AAMARQHARTLWYDRPRYVFMEFCVEDSTDVHVLIEDHRIVFSCKN-ADGVEL 93
Query: 1113 LNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDW 1292
NEI+ + ++ DS+ KR+ RSI C +RK + +WPRLTKE K WLSVDF+NW+DW
Sbjct: 94 YNEIEFYAKVNSKDSQDKRSSRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDW 153
Query: 1293 EDDSDEDMSNFDRFSEMMNNM 1355
E D + ++++ + ++E++ +
Sbjct: 154 EGDEEMELAHVEHYAELLKKV 174
>ref|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Homo sapiens].
Length = 525
Score = 109 bits (272), Expect = 9e-24
Identities = 49/114 (42%), Positives = 77/114 (67%)
Frame = +3
Query: 1014 IEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCC 1193
+EFCVEDS DV+V E ++ FSC +D + NEI+ + ++ DS+ KR+ RSI C
Sbjct: 1 MEFCVEDSTDVHVLIEDHRIVFSCKN-ADGVELYNEIEFYAKVNSKDSQDKRSSRSITCF 59
Query: 1194 LRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNM 1355
+RK + +WPRLTKE K WLSVDF+NW+DWE D + ++++ + ++E++ +
Sbjct: 60 VRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHVEHYAELLKKV 113
>ref|NP_001136126.1| alanyl-tRNA editing protein Aarsd1 isoform 4 [Homo sapiens].
Length = 161
Score = 85.1 bits (209), Expect = 2e-16
Identities = 35/87 (40%), Positives = 59/87 (67%)
Frame = +3
Query: 1095 SDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDF 1274
+D + NEI+ + ++ DS+ KR+ RSI C +RK + +WPRLTKE K WLSVDF
Sbjct: 50 ADGVELYNEIEFYAKVNSKDSQDKRSSRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDF 109
Query: 1275 NNWKDWEDDSDEDMSNFDRFSEMMNNM 1355
+NW+DWE D + ++++ + ++E++ +
Sbjct: 110 DNWRDWEGDEEMELAHVEHYAELLKKV 136
>ref|NP_001136125.1| alanyl-tRNA editing protein Aarsd1 isoform 3 [Homo sapiens].
Length = 166
Score = 80.5 bits (197), Expect = 4e-15
Identities = 46/141 (32%), Positives = 68/141 (48%)
Frame = +3
Query: 933 HPFARPLAPFTMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKH 1112
HP A A Q A WYDR YVF+EFCVEDS DV+V E ++ FSC +D +
Sbjct: 37 HPGAG--AAMARQHARTLWYDRPRYVFMEFCVEDSTDVHVLIEDHRIVFSC-KNADGVEL 93
Query: 1113 LNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDW 1292
NEI+ + K +K WLSVDF+NW+DW
Sbjct: 94 YNEIEFY---------------------------------AKVNSKPVWLSVDFDNWRDW 120
Query: 1293 EDDSDEDMSNFDRFSEMMNNM 1355
E D + ++++ + ++E++ +
Sbjct: 121 EGDEEMELAHVEHYAELLKKV 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,994,038
Number of extensions: 1641567
Number of successful extensions: 6824
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6779
Number of HSP's successfully gapped: 6
Length of query: 563
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 455
Effective length of database: 14,737,052
Effective search space: 6705358660
Effective search space used: 6705358660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008374
(1690 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1832 0.0
Sscrofa_Chr14 78 2e-11
>Sscrofa_Chr05
|| Length = 111506441
Score = 1832 bits (924), Expect = 0.0
Identities = 957/968 (98%)
Strand = Plus / Minus
Query: 1 tgaaaaaggatgaggtttcccccctcccctacagattcagcctggagaatccaagtgtcc 60
||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 23696721 tgaaaaaagatgaggtttcccccctcccctacaggatcagcctggagactccaagtgtcc 23696662
Query: 61 tggtctctccattcccgcaaactaagattcatttaataactttcctctcgcatcaaagca 120
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 23696661 tggtctctccattcccgcaaacttagactcatttaataactttcctctcgcatcaaagca 23696602
Query: 121 ggtgcgaatgccggtcagccaaagacctcgaatttccgcggcccctggacaggttctcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696601 ggtgcgaatgccggtcagccaaagacctcgaatttccgcggcccctggacaggttctcca 23696542
Query: 181 cccctcagaaagacggcgaggaggacccaggcctgtgactcaggttagccctttccctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696541 cccctcagaaagacggcgaggaggacccaggcctgtgactcaggttagccctttccctca 23696482
Query: 241 aatatcaccagcggaggctttgcccatctttttgccgtagactgttttctcagtgagccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696481 aatatcaccagcggaggctttgcccatctttttgccgtagactgttttctcagtgagccg 23696422
Query: 301 atgtactccctcaagtaaccgatcccctatttcacttatcaagcctccagactctgcgtc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 23696421 atgtactccctcaagtaaccgatcccctatttcacttttcaagcctccagactctgcgtc 23696362
Query: 361 catccgcctcggccttcctccctcggttaacgcgaccgtttctcggggagatcgcccaag 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 23696361 catccgcctcggccttcctccctcggttaacgcgacagtttctcggggagatcgcccaag 23696302
Query: 421 gcgcgtggcagggcggttaggcgaccaacggtttccaccgcgaggaggggggagcgggca 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23696301 gcgcgtggcagggcggttaggcgaccaacggttcccaccgcgaggaggggggagcgggca 23696242
Query: 481 aagcggcgggaaccagtcgagccggaggcagccgacgtggggcggggccagccccgggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696241 aagcggcgggaaccagtcgagccggaggcagccgacgtggggcggggccagccccgggaa 23696182
Query: 541 ggaccgcgaaggagctgggaagccccgccctttccgtagatatctctagaaagccgcgca 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696181 ggatcgcgaaggagctgggaagccccgccctttccgtagatatctctagaaagccgcgca 23696122
Query: 601 ggagcccgaaaacaaagagtgcgcacgcgcggcggctgggcccgggcattttgctgcgtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696121 ggagcccgaaaacaaagagtgcgcacgcgcggcggctgggcccgggcattttgctgcgtc 23696062
Query: 661 accagccgccgcccggcctcaccacccctcgctcgcacgcacgcacgttcattctccgtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696061 accagccgccgcccggcctcaccacccctcgctcgcacgcacgcacgttcattctccgtt 23696002
Query: 721 ctcgcgccccttttcctacactttccttttctccccgaccggaggagtcgctctgcccgc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696001 ctcgcgccccttttcctacactttccttttctccccgaccggaggagtcgctctgcccgc 23695942
Query: 781 gcggtgcattctgggaacccaggtctagcccgccgtcgccgccgccgtcgcttgagggaa 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 23695941 gcggtgcattctgggaacccaggtctagcccgccgccgccgccgccgtcgcttgagggaa 23695882
Query: 841 aagcgaaaagaggccgcaatcggggagaggacgccagagtcgccaccggagaggagtcga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23695881 aagcgaaaagaggccgcaatcggggagaggacgccagagtcgccaccggagaggagtcga 23695822
Query: 901 ctgcctaccagctgccgccggagaggcccgcccacccgttcgcccgtccccttgccccgt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23695821 ctgcctaccagctgccgccggagaggcccgcccacccgttcgcccgtccccttgccccgt 23695762
Query: 961 tcacgatg 968
||||||||
Sbjct: 23695761 tcacgatg 23695754
Score = 462 bits (233), Expect = e-127
Identities = 253/262 (96%)
Strand = Plus / Minus
Query: 1429 aaatgccagatctggagtaaggaatgtgtcatcgctggatgttgaggaagaaaaataact 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23675878 aaatgccagatctggagtaaggaatgtgtcatcgctggatgttgaggaagaaaaataact 23675819
Query: 1489 tctcttcaaaggtttcataattaagagaattcctgagttgatagctctaaaggcagattc 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23675818 tctcttcaaaggtttcataattaagagaattcctgagttgatagctctaaaggcagattc 23675759
Query: 1549 tgtatttgcctactttaacccatttttcaacctgtttgnnnnnnnaaaaaggcttcacta 1608
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23675758 tgtatttgcctactttaacccatttttcaacctgtttgtttttttaaaaaggcttcacta 23675699
Query: 1609 agggttgatatgtaccattgtatggggcaatttttagtcagctaaggcaataaccttatg 1668
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 23675698 agggttgatatgtaccattgtatggggcaattttaagtcagctaaggcaataaccttatg 23675639
Query: 1669 catgaacatttcccaaactgcc 1690
||||||||||||||| ||||||
Sbjct: 23675638 catgaacatttcccagactgcc 23675617
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 968 gcagcctgcttctgcaaagtggtacgatcgaagggactatgtcttcattgaattttgtgt 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23684128 gcagcctgcttctgcaaagtggtacgatcgaagggactatgtcttcattgaattttgtgt 23684069
Query: 1028 tgaagacagtaaagatgttaatgtaaattttgaaaagtccaagcttacattcag 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23684068 tgaagacagtaaagatgttaatgtaaattttgaaaagtccaagcttacattcag 23684015
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1152 gattccaagcataaaagaacggacagatcaattttatgttgtttacgaaaaggagaatct 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23683260 gattccaagcataaaagaacggacagatcaattttatgttgtttacgaaaaggagaatct 23683201
Query: 1212 ggccagtcatggccacggttaacaaaagaaagggcgaag 1250
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23683200 ggccagtcatggccacggttaacaaaagaaagggcgaag 23683162
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1249 agcttaattggcttagtgtggacttcaataattggaaagactgggaagatgactcagatg 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23680207 agcttaattggcttagtgtggacttcaataattggaaagactgggaagatgactcagatg 23680148
Query: 1309 aagacatgtctaattttgatcgtttctctgag 1340
||||||||||||||||||||||||||||||||
Sbjct: 23680147 aagacatgtctaattttgatcgtttctctgag 23680116
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1079 cagttgtcttggaggaagtgataattttaaacatttaaatgaaattgatctttttcactg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23683863 cagttgtcttggaggaagtgataattttaaacatttaaatgaaattgatctttttcactg 23683804
Query: 1139 tattgatccaaatg 1152
||||||||||||||
Sbjct: 23683803 tattgatccaaatg 23683790
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1339 agatgatgaacaacatgggtggtgatgaggatgtagatttaccagaagtagatggagcag 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23678014 agatgatgaacaacatgggtggtgatgaggatgtagatttaccagaagtagatggagcag 23677955
Query: 1399 atgatg 1404
||||||
Sbjct: 23677954 atgatg 23677949
>Sscrofa_Chr14
|| Length = 153851969
Score = 77.8 bits (39), Expect = 2e-11
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 1648 agctaaggcaataaccttatgcatgaacatttcccaaactgcc 1690
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 83877760 agctaaggcaataaccttatgcatgaacatttcccagactgcc 83877718
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,060,803
Number of extensions: 355
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 8
Length of query: 1690
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1668
Effective length of database: 2,808,408,574
Effective search space: 4684425501432
Effective search space used: 4684425501432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)