Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008377
(865 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777174.1| peroxiredoxin-5, mitochondrial precursor [Bos t... 272 4e-76
>ref|NP_777174.1| peroxiredoxin-5, mitochondrial precursor [Bos taurus].
Length = 219
Score = 272 bits (695), Expect(2) = 4e-76
Identities = 137/169 (81%), Positives = 142/169 (84%)
Frame = +3
Query: 207 FEKRGVAMAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL 386
F VAMAPIKVGDAIPSV VFE P KVNLAELFKGKKGVLFG+PGAFTPGCSKTHL
Sbjct: 51 FRSAAVAMAPIKVGDAIPSVEVFEKGPGNKVNLAELFKGKKGVLFGLPGAFTPGCSKTHL 110
Query: 387 PGFVEQAEALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETXXXX 566
PGFVEQA+ALKAKGIQVVACL+VNDVFVTE W R H EGKVRLLADP+G FGKET
Sbjct: 111 PGFVEQADALKAKGIQVVACLTVNDVFVTEEWARTHKAEGKVRLLADPSGTFGKETDLLL 170
Query: 567 XXXXXXXFGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL 713
FGN RLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNI+SQL
Sbjct: 171 DDSLLFLFGNHRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNILSQL 219
Score = 32.0 bits (71), Expect(2) = 4e-76
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +1
Query: 163 CLEGDLEWTLGRVRDLRSA 219
CLEG LEWT G VR RSA
Sbjct: 36 CLEGILEWTFGGVRGFRSA 54
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,970,834
Number of extensions: 1280189
Number of successful extensions: 5099
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4972
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 187
Effective length of database: 14,339,486
Effective search space: 2681483882
Effective search space used: 2681483882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008377
(865 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533241.1| PREDICTED: similar to Peroxiredoxin 5, mitochon... 279 3e-75
>ref|XP_533241.1| PREDICTED: similar to Peroxiredoxin 5, mitochondrial precursor
(Prx-V) (Peroxisomal antioxidant enzyme) (PLP)
(Thioredoxin reductase) (Thioredoxin peroxidase PMP20)
(Antioxidant enzyme B166) (AOEB166) (TPx type VI) (Liver
tissue 2D-page spot 71B) (Alu corepre... [Canis
familiaris].
Length = 162
Score = 279 bits (713), Expect = 3e-75
Identities = 138/162 (85%), Positives = 145/162 (89%)
Frame = +3
Query: 228 MAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 407
MAPIKVGDAIPSV VFEGEP +VNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGF+EQA
Sbjct: 1 MAPIKVGDAIPSVTVFEGEPGNEVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFMEQA 60
Query: 408 EALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETXXXXXXXXXXX 587
EALKAKG+QV+ACLSVNDVFVTE WGRAHN+ GKVRLLADPTGAFGKET
Sbjct: 61 EALKAKGVQVIACLSVNDVFVTEAWGRAHNSGGKVRLLADPTGAFGKETDLLLDDSLVSL 120
Query: 588 FGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL 713
FGN RLKRFSMVIE+GIVKSLNVEPDGTGLTCSLAPNI+SQL
Sbjct: 121 FGNHRLKRFSMVIENGIVKSLNVEPDGTGLTCSLAPNILSQL 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,543,541
Number of extensions: 1303218
Number of successful extensions: 5571
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5226
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 186
Effective length of database: 15,474,232
Effective search space: 2878207152
Effective search space used: 2878207152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008377
(865 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999309.1| peroxiredoxin-5, mitochondrial [Sus scrofa]. 297 6e-81
Alignment gi|XP_003122643.2| PREDICTED: coiled-coil domain-containing pro... 96 3e-20
>ref|NP_999309.1| peroxiredoxin-5, mitochondrial [Sus scrofa].
Length = 162
Score = 297 bits (760), Expect = 6e-81
Identities = 150/162 (92%), Positives = 150/162 (92%)
Frame = +3
Query: 228 MAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 407
MAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA
Sbjct: 1 MAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA 60
Query: 408 EALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETXXXXXXXXXXX 587
EALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKET
Sbjct: 61 EALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETDLLLDDSLVSL 120
Query: 588 FGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL 713
FGNRRLKRFSMVIEDGIVKSLNVEPD TGLTCSLAPNIISQL
Sbjct: 121 FGNRRLKRFSMVIEDGIVKSLNVEPDDTGLTCSLAPNIISQL 162
>ref|XP_003122643.2| PREDICTED: coiled-coil domain-containing protein 88B [Sus scrofa].
Length = 1465
Score = 95.9 bits (237), Expect = 3e-20
Identities = 46/49 (93%), Positives = 46/49 (93%)
Frame = +3
Query: 243 VGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLP 389
VGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSK P
Sbjct: 37 VGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKPPCP 85
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,339,587
Number of extensions: 849981
Number of successful extensions: 3217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3175
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,904,026
Effective search space: 1691764940
Effective search space used: 1691764940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008377
(865 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036151.1| peroxiredoxin-5, mitochondrial precursor [Mus m... 277 9e-75
>ref|NP_036151.1| peroxiredoxin-5, mitochondrial precursor [Mus musculus].
Length = 210
Score = 277 bits (708), Expect = 9e-75
Identities = 140/169 (82%), Positives = 144/169 (85%)
Frame = +3
Query: 207 FEKRGVAMAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL 386
F V MAPIKVGDAIPSV VFEGEP KKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL
Sbjct: 42 FSSSAVTMAPIKVGDAIPSVEVFEGEPGKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL 101
Query: 387 PGFVEQAEALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETXXXX 566
PGFVEQA ALKAKG QVVACLSVNDVFV E WGRAH EGKVRLLADPTGAFGK T
Sbjct: 102 PGFVEQAGALKAKGAQVVACLSVNDVFVIEEWGRAHQAEGKVRLLADPTGAFGKATDLLL 161
Query: 567 XXXXXXXFGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL 713
FGNRRLKRFSMVI++GIVK+LNVEPDGTGLTCSLAPNI+SQL
Sbjct: 162 DDSLVSLFGNRRLKRFSMVIDNGIVKALNVEPDGTGLTCSLAPNILSQL 210
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,183,955
Number of extensions: 1039583
Number of successful extensions: 3834
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3770
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 188
Effective length of database: 12,613,959
Effective search space: 2371424292
Effective search space used: 2371424292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008377
(865 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036226.1| peroxiredoxin-5, mitochondrial isoform a precur... 281 4e-76
Alignment gi|NP_857634.1| peroxiredoxin-5, mitochondrial isoform b precur... 183 2e-46
Alignment gi|NP_857635.1| peroxiredoxin-5, mitochondrial isoform c precur... 110 2e-24
>ref|NP_036226.1| peroxiredoxin-5, mitochondrial isoform a precursor [Homo sapiens].
Length = 214
Score = 281 bits (720), Expect = 4e-76
Identities = 140/169 (82%), Positives = 146/169 (86%)
Frame = +3
Query: 207 FEKRGVAMAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL 386
F + AMAPIKVGDAIP+V VFEGEP KVNLAELFKGKKGVLFGVPGAFTPGCSKTHL
Sbjct: 46 FSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL 105
Query: 387 PGFVEQAEALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETXXXX 566
PGFVEQAEALKAKG+QVVACLSVND FVT WGRAH EGKVRLLADPTGAFGKET
Sbjct: 106 PGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLL 165
Query: 567 XXXXXXXFGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL 713
FGNRRLKRFSMV++DGIVK+LNVEPDGTGLTCSLAPNIISQL
Sbjct: 166 DDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214
>ref|NP_857634.1| peroxiredoxin-5, mitochondrial isoform b precursor [Homo sapiens].
Length = 170
Score = 183 bits (464), Expect = 2e-46
Identities = 102/169 (60%), Positives = 107/169 (63%)
Frame = +3
Query: 207 FEKRGVAMAPIKVGDAIPSVVVFEGEPEKKVNLAELFKGKKGVLFGVPGAFTPGCSKTHL 386
F + AMAPIKVGDAIP+V VFEGEP KVNLAELFKGKKGVLFGVPGAFTPGCSK
Sbjct: 46 FSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSK--- 102
Query: 387 PGFVEQAEALKAKGIQVVACLSVNDVFVTEMWGRAHNTEGKVRLLADPTGAFGKETXXXX 566
VRLLADPTGAFGKET
Sbjct: 103 -----------------------------------------VRLLADPTGAFGKETDLLL 121
Query: 567 XXXXXXXFGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNIISQL 713
FGNRRLKRFSMV++DGIVK+LNVEPDGTGLTCSLAPNIISQL
Sbjct: 122 DDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 170
>ref|NP_857635.1| peroxiredoxin-5, mitochondrial isoform c precursor [Homo sapiens].
Length = 125
Score = 110 bits (275), Expect = 2e-24
Identities = 55/69 (79%), Positives = 58/69 (84%)
Frame = +3
Query: 507 KVRLLADPTGAFGKETXXXXXXXXXXXFGNRRLKRFSMVIEDGIVKSLNVEPDGTGLTCS 686
KVRLLADPTGAFGKET FGNRRLKRFSMV++DGIVK+LNVEPDGTGLTCS
Sbjct: 57 KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS 116
Query: 687 LAPNIISQL 713
LAPNIISQL
Sbjct: 117 LAPNIISQL 125
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,623,310
Number of extensions: 1264273
Number of successful extensions: 4883
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4801
Number of HSP's successfully gapped: 4
Length of query: 288
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 186
Effective length of database: 14,934,836
Effective search space: 2777879496
Effective search space used: 2777879496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008377
(865 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 464 e-128
>Sscrofa_Chr02
|| Length = 162569375
Score = 464 bits (234), Expect = e-128
Identities = 234/234 (100%)
Strand = Plus / Minus
Query: 12 ctcagcctctaggtgggggtggagccgttggggcttccaggctccgcaggctgttggtgc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6867819 ctcagcctctaggtgggggtggagccgttggggcttccaggctccgcaggctgttggtgc 6867760
Query: 72 ggctgcgccttctgcgcagcccggcaggtttggtgggctcccgggcgactgccgttgagt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6867759 ggctgcgccttctgcgcagcccggcaggtttggtgggctcccgggcgactgccgttgagt 6867700
Query: 132 gtgcagcagtggcagcggcgggagccgagggtgcctggaaggagacctcgagtggacgct 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6867699 gtgcagcagtggcagcggcgggagccgagggtgcctggaaggagacctcgagtggacgct 6867640
Query: 192 tggcagggtccgagatttgagaagcgcggtgtagccatggccccgatcaaggtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6867639 tggcagggtccgagatttgagaagcgcggtgtagccatggccccgatcaaggtg 6867586
Score = 460 bits (232), Expect = e-127
Identities = 235/236 (99%)
Strand = Plus / Minus
Query: 609 aggttctccatggtgatcgaggatggcatagtgaagtccctgaatgtggagccagatggc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6864722 aggttctccatggtgatcgaggatggcatagtgaagtccctgaatgtggagccagatggc 6864663
Query: 669 acaggcctcacctgcagcctggcccccaacatcatctcacagctctgaggccttgagccc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6864662 acaggcctcacctgcagcctggcccccaacatcatctcacagctctgaggccttgagccc 6864603
Query: 729 agatatatttcttctccccttttcacgtgcccagctgtggggagcgggccccgggctcac 788
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6864602 agatatattttttctccccttttcacgtgcccagctgtggggagcgggccccgggctcac 6864543
Query: 789 ctcagtcggaaccttggccagatttctgcaataaactcttctggttcgtgtctgtc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6864542 ctcagtcggaaccttggccagatttctgcaataaactcttctggttcgtgtctgtc 6864487
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 241 aggtgggagatgccatcccatcggtggtggtgtttgaaggggagcctgagaaaaaggtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6866430 aggtgggagatgccatcccatcggtggtggtgtttgaaggggagcctgagaaaaaggtga 6866371
Query: 301 acctggcagagctgttcaagggcaagaagggggtgctgtttggagtccctggggccttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6866370 acctggcagagctgttcaagggcaagaagggggtgctgtttggagtccctggggccttta 6866311
Query: 361 ctcctggctgttccaag 377
|||||||||||||||||
Sbjct: 6866310 ctcctggctgttccaag 6866294
Score = 262 bits (132), Expect = 3e-67
Identities = 135/136 (99%)
Strand = Plus / Minus
Query: 376 agacccaccttccagggtttgtggagcaggccgaagcactgaaggccaaggggatccaag 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865265 agacccaccttccagggtttgtggagcaggccgaagcactgaaggccaaggggatccaag 6865206
Query: 436 tggtggcatgtctgagtgttaatgacgtctttgtcactgaaatgtggggacgagcccaca 495
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865205 tggtggcgtgtctgagtgttaatgacgtctttgtcactgaaatgtggggacgagcccaca 6865146
Query: 496 acacggaaggcaaggt 511
||||||||||||||||
Sbjct: 6865145 acacggaaggcaaggt 6865130
Score = 131 bits (66), Expect = 7e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 547 aggagacagatttattactagatgattccttggtgtctctctttgggaatcgacggctca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6864892 aggagacagatttattactagatgattccttggtgtctctctttgggaatcgacggctca 6864833
Query: 607 agaggt 612
||||||
Sbjct: 6864832 agaggt 6864827
Score = 75.8 bits (38), Expect = 4e-11
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 508 aggttcggctcctggctgaccccactggggcctttgggaagg 549
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6865060 aggttcggctcctggctgatcccactggggcctttgggaagg 6865019
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,925,705
Number of extensions: 292
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 6
Length of query: 865
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 844
Effective length of database: 2,808,413,156
Effective search space: 2370300703664
Effective search space used: 2370300703664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)