Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008387
(991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777244.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 493 e-139
>ref|NP_777244.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial precursor [Bos taurus].
Length = 266
Score = 493 bits (1269), Expect = e-139
Identities = 239/256 (93%), Positives = 247/256 (96%)
Frame = +3
Query: 120 GCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAEI 299
GCW+ LVG AA ARV+GRPSVLLLPVR+ES+AADTRPT+RPRNDV HKQLSAFG+YVAEI
Sbjct: 11 GCWQRLVGSAAPARVAGRPSVLLLPVRRESSAADTRPTVRPRNDVAHKQLSAFGEYVAEI 70
Query: 300 LPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEI 479
LPKYVQQVQVSCFNELEI IHPDGVIPVLTFLRDH+NAQFKSLADLTAVD+PTRQNRFEI
Sbjct: 71 LPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLTAVDIPTRQNRFEI 130
Query: 480 VYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRIL 659
VYNLLSLRFNSRIRVKTYTDELTPIESSV VYKAANWYEREIWDMFGVFFANHPDLRRIL
Sbjct: 131 VYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYEREIWDMFGVFFANHPDLRRIL 190
Query: 660 TDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQP 839
TDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQP
Sbjct: 191 TDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQP 250
Query: 840 PEDLKLEAGDKKPETK 887
PE LKLEAGD KPE K
Sbjct: 251 PESLKLEAGDTKPEAK 266
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,733,328
Number of extensions: 1040143
Number of successful extensions: 4100
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4080
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008387
(991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533185.2| PREDICTED: similar to NADH dehydrogenase (ubiqu... 493 e-140
Alignment gi|XP_853570.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 297 1e-80
>ref|XP_533185.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
3, 30kDa (NADH-coenzyme Q reductase) [Canis familiaris].
Length = 263
Score = 493 bits (1270), Expect = e-140
Identities = 238/257 (92%), Positives = 248/257 (96%)
Frame = +3
Query: 117 RGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAE 296
RG W+G+ G A+ARV+GRPSVLLLP R+ESAAADTRPT+RPRNDV HKQLSAFG+YVAE
Sbjct: 7 RGWWQGIKGSVALARVAGRPSVLLLPARRESAAADTRPTVRPRNDVAHKQLSAFGEYVAE 66
Query: 297 ILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE 476
ILPKYVQQVQVSCFNELEI IHPDGVIPVLTFLRDHTNAQFKSLADLTAVD+PTRQNRFE
Sbjct: 67 ILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDIPTRQNRFE 126
Query: 477 IVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRI 656
IVYNLLSLRFNSRIRVKTYTDELTPIES+V+VYKAANWYEREIWDMFGVFFANHPDLRRI
Sbjct: 127 IVYNLLSLRFNSRIRVKTYTDELTPIESTVSVYKAANWYEREIWDMFGVFFANHPDLRRI 186
Query: 657 LTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ 836
LTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ
Sbjct: 187 LTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ 246
Query: 837 PPEDLKLEAGDKKPETK 887
PPE LKLE GDKKPETK
Sbjct: 247 PPESLKLEPGDKKPETK 263
>ref|XP_853570.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
3, 30kDa (NADH-coenzyme Q reductase) [Canis familiaris].
Length = 209
Score = 297 bits (760), Expect = 1e-80
Identities = 146/192 (76%), Positives = 160/192 (83%)
Frame = +3
Query: 117 RGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAE 296
RG W+GL G +ARV+G+P + PT+RPRNDV HKQLSAFG+YVAE
Sbjct: 8 RGWWQGLTGSVVLARVAGQPLGAA-----STGEEGKHPTVRPRNDVAHKQLSAFGEYVAE 62
Query: 297 ILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE 476
ILPKYVQQVQV CFNELEI IHPDGVIPVLTFLRDHT+A F+SLADLTAVD+PT QN FE
Sbjct: 63 ILPKYVQQVQVFCFNELEICIHPDGVIPVLTFLRDHTSAPFQSLADLTAVDIPTWQNHFE 122
Query: 477 IVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRI 656
IVYNLLSLRFNS I V+TYTDELTPIE +V+VYKAANWY REIWD+FGVFFANHPDLRR
Sbjct: 123 IVYNLLSLRFNSWICVRTYTDELTPIEFTVSVYKAANWYVREIWDLFGVFFANHPDLRRT 182
Query: 657 LTDYGFEGHPFR 692
LTDYGFEGHPFR
Sbjct: 183 LTDYGFEGHPFR 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,237,684
Number of extensions: 1058390
Number of successful extensions: 4492
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4458
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008387
(991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230725.1| NADH dehydrogenase (ubiquinone) Fe-S protein... 521 e-148
>ref|NP_001230725.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa
(NADH-coenzyme Q reductase) [Sus scrofa].
Length = 264
Score = 521 bits (1342), Expect = e-148
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 117 RGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAE 296
RGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAE
Sbjct: 8 RGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAE 67
Query: 297 ILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE 476
ILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE
Sbjct: 68 ILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE 127
Query: 477 IVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRI 656
IVYNLLSLRFNS+IRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRI
Sbjct: 128 IVYNLLSLRFNSQIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRI 187
Query: 657 LTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ 836
LT YGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ
Sbjct: 188 LTGYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ 247
Query: 837 PPEDLKLEAGDKKPETK 887
PPEDLKLEAGDKKPETK
Sbjct: 248 PPEDLKLEAGDKKPETK 264
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,452,383
Number of extensions: 686122
Number of successful extensions: 2647
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2621
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008387
(991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080964.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 459 e-129
Alignment gi|XP_894449.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron... 451 e-127
Alignment gi|XP_003085834.1| PREDICTED: NADH dehydrogenase [ubiquinone] i... 401 e-112
>ref|NP_080964.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial precursor [Mus musculus].
Length = 263
Score = 459 bits (1181), Expect = e-129
Identities = 224/253 (88%), Positives = 237/253 (93%)
Frame = +3
Query: 129 RGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAEILPK 308
RGL+G A+V R +GRPSVL VR+ESAAAD RPT+RPR+DV HKQLSAFG+YVAEILPK
Sbjct: 11 RGLLGAASVGRGAGRPSVLWQHVRRESAAADKRPTVRPRSDVTHKQLSAFGEYVAEILPK 70
Query: 309 YVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYN 488
YVQQVQVSC +ELEI IHPDGVIP LTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYN
Sbjct: 71 YVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYN 130
Query: 489 LLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRILTDY 668
LLSLRFNSRIRVKTY DELTPI+S V+V+ AANWYERE+WDMFGVFF NHPDLRRILTDY
Sbjct: 131 LLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDY 190
Query: 669 GFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPED 848
GFEGHPFRKDFPL+GYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPE
Sbjct: 191 GFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 250
Query: 849 LKLEAGDKKPETK 887
LKLEAGDKKPETK
Sbjct: 251 LKLEAGDKKPETK 263
>ref|XP_894449.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial-like [Mus musculus].
Length = 263
Score = 451 bits (1159), Expect = e-127
Identities = 221/257 (85%), Positives = 235/257 (91%)
Frame = +3
Query: 117 RGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAE 296
R C RGL+G A+V R +GRPSVL VR+ES AAD RPT+RP +DV HKQLSAF +YVAE
Sbjct: 7 RVCCRGLLGAASVGRGAGRPSVLWQHVRRESTAADKRPTVRPWSDVTHKQLSAFAEYVAE 66
Query: 297 ILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE 476
ILPKYVQQVQVSC ++LEI IH DGVIP LTFLRDHTNAQFKSLADLTAVDVPTRQNRFE
Sbjct: 67 ILPKYVQQVQVSCLDKLEICIHHDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNRFE 126
Query: 477 IVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRI 656
IVYNLLSLRFNSRIRVKTY DELTPI+S V+V+ AANWYERE+WDMFGVFF NHPDLRRI
Sbjct: 127 IVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRI 186
Query: 657 LTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ 836
LTDYGFEGHPFRKDFPL+GYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ
Sbjct: 187 LTDYGFEGHPFRKDFPLAGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQ 246
Query: 837 PPEDLKLEAGDKKPETK 887
PPE LKLEAGDKKPETK
Sbjct: 247 PPESLKLEAGDKKPETK 263
>ref|XP_003085834.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial-like [Mus musculus].
Length = 233
Score = 401 bits (1030), Expect = e-112
Identities = 194/213 (91%), Positives = 202/213 (94%)
Frame = +3
Query: 249 DVVHKQLSAFGQYVAEILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSL 428
DV HKQLSAF +YVAEILPKYVQQVQVSC ++LEI IH DGVIP LTFLRDHTNAQFKSL
Sbjct: 21 DVTHKQLSAFAEYVAEILPKYVQQVQVSCLDKLEICIHHDGVIPTLTFLRDHTNAQFKSL 80
Query: 429 ADLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIW 608
ADLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTY DELTPI+S V+V+ AANWYERE+W
Sbjct: 81 ADLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVW 140
Query: 609 DMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFR 788
DMFGVFF NHPDLRRILTDYGFEGHPFRKDFPL+GYVELRYDDEVKRVVAEPVELAQEFR
Sbjct: 141 DMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLAGYVELRYDDEVKRVVAEPVELAQEFR 200
Query: 789 KFDLNSPWEAFPAYRQPPEDLKLEAGDKKPETK 887
KFDLNSPWEAFPAYRQPPE LKLEAGDKKPETK
Sbjct: 201 KFDLNSPWEAFPAYRQPPESLKLEAGDKKPETK 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,689,092
Number of extensions: 872837
Number of successful extensions: 3384
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3363
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008387
(991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004542.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 483 e-136
>ref|NP_004542.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial precursor [Homo sapiens].
Length = 264
Score = 483 bits (1243), Expect = e-136
Identities = 231/254 (90%), Positives = 244/254 (96%)
Frame = +3
Query: 126 WRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAEILP 305
WRG++G +A+ R +GRPSVLLLPVR+ESA ADTRPT+RPRNDV HKQLSAFG+YVAEILP
Sbjct: 11 WRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSAFGEYVAEILP 70
Query: 306 KYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVY 485
KYVQQVQVSCFNELE+ IHPDGVIPVLTFLRDHTNAQFKSL DLTAVDVPTRQNRFEIVY
Sbjct: 71 KYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVY 130
Query: 486 NLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRILTD 665
NLLSLRFNSRIRVKTYTDELTPIES+V+V+KAANWYEREIWDMFGVFFANHPDLRRILTD
Sbjct: 131 NLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTD 190
Query: 666 YGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPE 845
YGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFP YRQPPE
Sbjct: 191 YGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPE 250
Query: 846 DLKLEAGDKKPETK 887
LKLEAGDKKP+ K
Sbjct: 251 SLKLEAGDKKPDAK 264
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,473,510
Number of extensions: 1036738
Number of successful extensions: 4044
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4019
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008387
(991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 496 e-137
Sscrofa_Chr13 117 1e-23
>Sscrofa_Chr02
|| Length = 162569375
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Minus
Query: 721 agttgcgctacgatgatgaggtgaagcgggtggtggccgagccagtggagttggcccaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16207954 agttgcgctacgatgatgaggtgaagcgggtggtggccgagccagtggagttggcccaag 16207895
Query: 781 agttccgcaagtttgatctaaacagcccgtgggaggctttccctgcctatcgccagcccc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16207894 agttccgcaagtttgatctaaacagcccgtgggaggctttccctgcctatcgccagcccc 16207835
Query: 841 ctgaggatctcaagcttgaagccggagacaagaaacctgaaaccaagtagttccagggaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16207834 ctgaggatctcaagcttgaagccggagacaagaaacctgaaaccaagtagttccagggaa 16207775
Query: 901 ggcatatgtaccctagcaagcgccttatctgtaattgagtgtccctgtaaataaaatcct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16207774 ggcatatgtaccctagcaagcgccttatctgtaattgagtgtccctgtaaataaaatcct 16207715
Query: 961 gcttagacac 970
||||||||||
Sbjct: 16207714 gcttagacac 16207705
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 324 caggtgtcctgcttcaatgagttagagatttttatccatcctgatggagtcatcccagtg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16211070 caggtgtcctgcttcaatgagttagagatttttatccatcctgatggagtcatcccagtg 16211011
Query: 384 ctgactttcctcagggatcacactaacgcacagttcaaatccttggctgacctgacagca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16211010 ctgactttcctcagggatcacactaacgcacagttcaaatccttggctgacctgacagca 16210951
Query: 444 gtggatgtacctacccggcagaaccgttt 472
|||||||||||||||||||||||||||||
Sbjct: 16210950 gtggatgtacctacccggcagaaccgttt 16210922
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 475 agattgtttacaacctgctctctttgcgcttcaactcccggatccgtgtgaagacctata 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16209686 agattgtttacaacctgctctctttgcgcttcaactcccggatccgtgtgaagacctata 16209627
Query: 535 cagatgagctgacgcccattgagtcttctgtgactgtgtacaaggcagccaactggtatg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16209626 cagatgagctgacgcccattgagtcttctgtgactgtgtacaaggcagccaactggtatg 16209567
Query: 595 agagggag 602
||||||||
Sbjct: 16209566 agagggag 16209559
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 601 agatctgggacatgtttggagtcttctttgctaaccaccctgacctaagaaggatcctga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16209429 agatctgggacatgtttggagtcttctttgctaaccaccctgacctaagaaggatcctga 16209370
Query: 661 cagactatggctttgagggacatcctttccggaaagatttccccctgtctggctatgttg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16209369 cagactatggctttgagggacatcctttccggaaagatttccccctgtctggctatgttg 16209310
Query: 721 ag 722
||
Sbjct: 16209309 ag 16209308
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 229 ccactatcagaccacggaatgatgtggtccacaagcagctctcagcttttggacagtatg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16211371 ccactatcagaccacggaatgatgtggtccacaagcagctctcagcttttggacagtatg 16211312
Query: 289 tggccgaaatcctgcccaagtatgtccagcaagttcaggt 328
||||||||||||||||||||||||||||||||||||||||
Sbjct: 16211311 tggccgaaatcctgcccaagtatgtccagcaagttcaggt 16211272
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1 gaagatccgatgcacacttccgcttccggtccgtgcccttggggctccgtgtcctgcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16213425 gaagatccgatgcacacttccgcttccggtccgtgcccttggggctccgtgtcctgcgga 16213366
Query: 61 tctggcttctgctacctggtttgcagccgggaaaca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 16213365 tctggcttctgctacctggtttgcagccgggaaaca 16213330
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 162 gtgtccgggcgaccctcggtgcttttgctgcctgtgaggaaggaaagcgctgcggccgac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16213154 gtgtccgggcgaccctcggtgcttttgctgcctgtgaggaaggaaagcgctgcggccgac 16213095
Query: 222 acgcgcc 228
|||||||
Sbjct: 16213094 acgcgcc 16213088
>Sscrofa_Chr13
|| Length = 218635234
Score = 117 bits (59), Expect = 1e-23
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 810 tgggaggctttccctgcctatcgccagccccctgaggatctcaagcttgaagccggagac 869
|||||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||
Sbjct: 197564514 tgggaggctttccccatctatcaccagttccctgagagtctcaagcttgaagctggagac 197564573
Query: 870 aagaaacctgaaaccaagtagttccagggaaggcatatgtaccctagcaagcgccttat 928
||||||||||||||||||||||||||| ||||| ||||||| || || ||| |||||||
Sbjct: 197564574 aagaaacctgaaaccaagtagttccagagaaggtatatgtatccgaggaagtgccttat 197564632
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,854,695
Number of extensions: 81
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 8
Length of query: 991
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 970
Effective length of database: 2,808,413,156
Effective search space: 2724160761320
Effective search space used: 2724160761320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)