Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008389
(636 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028792.1| NADH dehydrogenase [ubiquinone] 1 beta subco... 248 2e-66
>ref|NP_001028792.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11,
mitochondrial precursor [Bos taurus].
Length = 154
Score = 248 bits (634), Expect = 2e-66
Identities = 116/128 (90%), Positives = 122/128 (95%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWES SSRAVIAPS L GKRP EPT+R QEDP+PEDENLYEKNPDSHGYDKDP VD+WN
Sbjct: 27 VRWESSSSRAVIAPSTLAGKRPSEPTLRWQEDPEPEDENLYEKNPDSHGYDKDPAVDIWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 479
MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREA+GLP+MESNCFDP+K
Sbjct: 87 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREAHGLPIMESNCFDPSK 146
Query: 480 IQLPEDED 503
IQLPEDED
Sbjct: 147 IQLPEDED 154
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,039,726
Number of extensions: 790528
Number of successful extensions: 3651
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3637
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 114
Effective length of database: 14,438,750
Effective search space: 1646017500
Effective search space used: 1646017500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008389
(636 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538012.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 253 8e-68
>ref|XP_538012.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase ESSS subunit,
mitochondrial precursor (Complex I-ESSS) (CI-ESSS)
(Neuronal protein 17.3) (p17.3) (Np17.3) [Canis
familiaris].
Length = 154
Score = 253 bits (647), Expect = 8e-68
Identities = 118/128 (92%), Positives = 123/128 (96%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWES SSRAVIAPSA+ GKR PEPT+R QEDPDPEDENLYEKNPDSHGYDKDP+VDLWN
Sbjct: 27 VRWESSSSRAVIAPSAVAGKRTPEPTVRWQEDPDPEDENLYEKNPDSHGYDKDPVVDLWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 479
MRVVFFFGFSIVLV GSTFVAYLPDYRMQEWARREAERLVKYREANGLP+MESNCFDP+K
Sbjct: 87 MRVVFFFGFSIVLVFGSTFVAYLPDYRMQEWARREAERLVKYREANGLPIMESNCFDPSK 146
Query: 480 IQLPEDED 503
IQLPEDED
Sbjct: 147 IQLPEDED 154
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,147,670
Number of extensions: 799792
Number of successful extensions: 4016
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3997
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 114
Effective length of database: 15,607,576
Effective search space: 1779263664
Effective search space used: 1779263664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008389
(636 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360334.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 269 1e-72
Alignment gi|XP_003135104.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 269 1e-72
Alignment gi|XP_003135105.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 261 3e-70
Alignment gi|XP_003135113.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 178 2e-45
Alignment gi|XP_003135114.2| PREDICTED: RNA-binding protein 10, partial [... 65 4e-11
>ref|XP_003360334.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
subunit 11, mitochondrial-like [Sus scrofa].
Length = 154
Score = 269 bits (687), Expect = 1e-72
Identities = 128/128 (100%), Positives = 128/128 (100%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN
Sbjct: 27 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 479
MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK
Sbjct: 87 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 146
Query: 480 IQLPEDED 503
IQLPEDED
Sbjct: 147 IQLPEDED 154
>ref|XP_003135104.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
subunit 11, mitochondrial-like isoform 1 [Sus scrofa].
Length = 154
Score = 269 bits (687), Expect = 1e-72
Identities = 128/128 (100%), Positives = 128/128 (100%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN
Sbjct: 27 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 479
MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK
Sbjct: 87 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 146
Query: 480 IQLPEDED 503
IQLPEDED
Sbjct: 147 IQLPEDED 154
>ref|XP_003135105.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
subunit 11, mitochondrial-like isoform 2 [Sus scrofa].
Length = 164
Score = 261 bits (666), Expect = 3e-70
Identities = 128/138 (92%), Positives = 128/138 (92%), Gaps = 10/138 (7%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN
Sbjct: 27 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYR----------MQEWARREAERLVKYREANGLPL 449
MRVVFFFGFSIVLVLGSTFVAYLPDYR MQEWARREAERLVKYREANGLPL
Sbjct: 87 MRVVFFFGFSIVLVLGSTFVAYLPDYRCMGCPREWGGMQEWARREAERLVKYREANGLPL 146
Query: 450 MESNCFDPNKIQLPEDED 503
MESNCFDPNKIQLPEDED
Sbjct: 147 MESNCFDPNKIQLPEDED 164
>ref|XP_003135113.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
subunit 11, mitochondrial-like [Sus scrofa].
Length = 91
Score = 178 bits (452), Expect = 2e-45
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = +3
Query: 249 NPDSHGYDKDPIVDLWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYR 428
NPDSHGYDKDPIVDLWNMRVVFFFGFSIVLVLGSTFVAYL DYRMQEWARREAERLVKYR
Sbjct: 7 NPDSHGYDKDPIVDLWNMRVVFFFGFSIVLVLGSTFVAYLRDYRMQEWARREAERLVKYR 66
Query: 429 EANGLPLMESNCFDPNKIQLPEDED 503
EANGLPLMESNCFDPNKIQLPEDED
Sbjct: 67 EANGLPLMESNCFDPNKIQLPEDED 91
>ref|XP_003135114.2| PREDICTED: RNA-binding protein 10, partial [Sus scrofa].
Length = 1066
Score = 64.7 bits (156), Expect = 4e-11
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -3
Query: 208 CKRIVGSGGRFPTRADGAITALEEPDSQRT 119
CKRIVGSGGRFPTRADGAITALEEPDSQRT
Sbjct: 149 CKRIVGSGGRFPTRADGAITALEEPDSQRT 178
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,427,419
Number of extensions: 545151
Number of successful extensions: 2382
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2377
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 117
Effective length of database: 8,978,717
Effective search space: 1050509889
Effective search space used: 1050509889
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008389
(636 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062308.2| NADH dehydrogenase [ubiquinone] 1 beta subcompl... 212 2e-55
Alignment gi|NP_079779.2| NADH dehydrogenase [ubiquinone] 1 beta subcompl... 177 6e-45
>ref|NP_062308.2| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11,
mitochondrial [Mus musculus].
Length = 151
Score = 212 bits (540), Expect = 2e-55
Identities = 100/127 (78%), Positives = 112/127 (88%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWES SRAVIAPS + KR EPT++ QEDP+PEDEN+Y KNPD HGYD DP+VD+WN
Sbjct: 27 VRWES--SRAVIAPSGVEKKRQREPTMQWQEDPEPEDENVYAKNPDFHGYDSDPVVDVWN 84
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 479
MR VFFFGFSIVLV G+TFVAY+PDYRMQEWARREAERLVKYRE NGLP+MESN FDP+K
Sbjct: 85 MRAVFFFGFSIVLVFGTTFVAYVPDYRMQEWARREAERLVKYREVNGLPIMESNYFDPSK 144
Query: 480 IQLPEDE 500
IQLPED+
Sbjct: 145 IQLPEDD 151
>ref|NP_079779.2| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11,
mitochondrial-like [Mus musculus].
Length = 150
Score = 177 bits (449), Expect = 6e-45
Identities = 85/125 (68%), Positives = 98/125 (78%)
Frame = +3
Query: 126 WESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWNMR 305
W+S SSRAV+A SA K EPT++ EDPDPEDEN+Y KNP HGYD DP VD NM
Sbjct: 26 WKSSSSRAVVARSAAARKEQEEPTVQWMEDPDPEDENVYLKNPHFHGYDDDPKVDALNMH 85
Query: 306 VVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNKIQ 485
VFFFGFSI LVLG+TFVAY+P+Y+M EWARREA LVK+REA+GLP+MESN FDP KI
Sbjct: 86 AVFFFGFSIALVLGTTFVAYVPNYKMIEWARREAAMLVKHREASGLPIMESNYFDPTKIN 145
Query: 486 LPEDE 500
L ED+
Sbjct: 146 LLEDD 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,284,516
Number of extensions: 627495
Number of successful extensions: 2839
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2827
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 115
Effective length of database: 12,704,067
Effective search space: 1460967705
Effective search space used: 1460967705
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008389
(636 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129470.1| NADH dehydrogenase [ubiquinone] 1 beta subco... 236 9e-63
Alignment gi|NP_061929.2| NADH dehydrogenase [ubiquinone] 1 beta subcompl... 228 3e-60
>ref|NP_001129470.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11,
mitochondrial isoform 2 [Homo sapiens].
Length = 153
Score = 236 bits (603), Expect = 9e-63
Identities = 107/127 (84%), Positives = 119/127 (93%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWES SR V+APSA+ GKRPPEPT QEDP+PEDENLYEKNPDSHGYDKDP++D+WN
Sbjct: 27 VRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHGYDKDPVLDVWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNK 479
MR+VFFFG SI+LVLGSTFVAYLPDYRM+EW+RREAERLVKYREANGLP+MESNCFDP+K
Sbjct: 87 MRLVFFFGVSIILVLGSTFVAYLPDYRMKEWSRREAERLVKYREANGLPIMESNCFDPSK 146
Query: 480 IQLPEDE 500
IQLPEDE
Sbjct: 147 IQLPEDE 153
>ref|NP_061929.2| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11,
mitochondrial isoform 1 [Homo sapiens].
Length = 163
Score = 228 bits (582), Expect = 3e-60
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 10/137 (7%)
Frame = +3
Query: 120 VRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWN 299
VRWES SR V+APSA+ GKRPPEPT QEDP+PEDENLYEKNPDSHGYDKDP++D+WN
Sbjct: 27 VRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHGYDKDPVLDVWN 86
Query: 300 MRVVFFFGFSIVLVLGSTFVAYLPDYR----------MQEWARREAERLVKYREANGLPL 449
MR+VFFFG SI+LVLGSTFVAYLPDYR M+EW+RREAERLVKYREANGLP+
Sbjct: 87 MRLVFFFGVSIILVLGSTFVAYLPDYRCTGCPRAWDGMKEWSRREAERLVKYREANGLPI 146
Query: 450 MESNCFDPNKIQLPEDE 500
MESNCFDP+KIQLPEDE
Sbjct: 147 MESNCFDPSKIQLPEDE 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,405,526
Number of extensions: 762326
Number of successful extensions: 3526
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3522
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 114
Effective length of database: 15,066,692
Effective search space: 1717602888
Effective search space used: 1717602888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008389
(636 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 492 e-136
>Sscrofa_ChrX
|| Length = 144288218
Score = 492 bits (248), Expect = e-136
Identities = 248/248 (100%)
Strand = Plus / Plus
Query: 1 atttccgtccccgcccccgcgagcctgcagaacgagctgtcatggcggccggggtgttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46878725 atttccgtccccgcccccgcgagcctgcagaacgagctgtcatggcggccggggtgttag 46878784
Query: 61 gtttgtgcgctcgccgccttttagcagcagcggcgacgcgagggctcccggctgcccgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46878785 gtttgtgcgctcgccgccttttagcagcagcggcgacgcgagggctcccggctgcccgtg 46878844
Query: 121 ttcgctgggagtccggctcctccagggctgtgatcgccccgtccgctctggtgggaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46878845 ttcgctgggagtccggctcctccagggctgtgatcgccccgtccgctctggtgggaaagc 46878904
Query: 181 ggccgccggaaccgactatacgcttgcaggaggacccagatccggaggacgaaaacctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46878905 ggccgccggaaccgactatacgcttgcaggaggacccagatccggaggacgaaaacctct 46878964
Query: 241 atgagaag 248
||||||||
Sbjct: 46878965 atgagaag 46878972
Score = 480 bits (242), Expect = e-133
Identities = 242/242 (100%)
Strand = Plus / Plus
Query: 1 atttccgtccccgcccccgcgagcctgcagaacgagctgtcatggcggccggggtgttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46626061 atttccgtccccgcccccgcgagcctgcagaacgagctgtcatggcggccggggtgttag 46626120
Query: 61 gtttgtgcgctcgccgccttttagcagcagcggcgacgcgagggctcccggctgcccgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46626121 gtttgtgcgctcgccgccttttagcagcagcggcgacgcgagggctcccggctgcccgtg 46626180
Query: 121 ttcgctgggagtccggctcctccagggctgtgatcgccccgtccgctctggtgggaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46626181 ttcgctgggagtccggctcctccagggctgtgatcgccccgtccgctctggtgggaaagc 46626240
Query: 181 ggccgccggaaccgactatacgcttgcaggaggacccagatccggaggacgaaaacctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46626241 ggccgccggaaccgactatacgcttgcaggaggacccagatccggaggacgaaaacctct 46626300
Query: 241 at 242
||
Sbjct: 46626301 at 46626302
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 377 caggatgcaggagtgggcccgccgggaagctgagaggctcgtgaaataccgagaggccaa 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46608147 caggatgcaggagtgggcccgccgggaagctgagaggctcgtgaaataccgagaggccaa 46608088
Query: 437 cggcctccccctcatggaatccaactgcttcgaccccaacaagatccagctgccggagga 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46608087 cggcctccccctcatggaatccaactgcttcgaccccaacaagatccagctgccggagga 46608028
Query: 497 tgaggactgacctggggccgagagaggcttaagaagcacctctttctttatctcctgtct 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46608027 tgaggactgacctggggccgagagaggcttaagaagcacctctttctttatctcctgtct 46607968
Query: 557 gccattctgcccttctctcagagcacctaattaaagggactgaaaatgt 605
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46607967 gccattctgcccttctctcagagcacctaattaaagggactgaaaatgt 46607919
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 377 caggatgcaggagtgggcccgccgggaagctgagaggctcgtgaaataccgagaggccaa 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46881055 caggatgcaggagtgggcccgccgggaagctgagaggctcgtgaaataccgagaggccaa 46881114
Query: 437 cggcctccccctcatggaatccaactgcttcgaccccaacaagatccagctgccggagga 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46881115 cggcctccccctcatggaatccaactgcttcgaccccaacaagatccagctgccggagga 46881174
Query: 497 tgaggactgacctggggccgagagaggcttaagaagcacctctttctttatctcctgtct 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46881175 tgaggactgacctggggccgagagaggcttaagaagcacctctttctttatctcctgtct 46881234
Query: 557 gccattctgcccttctctcagagcacctaattaaagggactgaaaatgt 605
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46881235 gccattctgcccttctctcagagcacctaattaaagggactgaaaatgt 46881283
Score = 266 bits (134), Expect = 1e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 247 agaacccagattcccacggttatgacaaggaccccattgtggacctctggaacatgcggg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46880762 agaacccagattcccacggttatgacaaggaccccattgtggacctctggaacatgcggg 46880821
Query: 307 tcgtcttcttctttggcttctccatcgtcttggtccttggcagcacctttgtggcttatc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46880822 tcgtcttcttctttggcttctccatcgtcttggtccttggcagcacctttgtggcttatc 46880881
Query: 367 tgcctgactacagg 380
||||||||||||||
Sbjct: 46880882 tgcctgactacagg 46880895
Score = 258 bits (130), Expect = 3e-66
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 247 agaacccagattcccacggttatgacaaggaccccattgtggacctctggaacatgcggg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46608440 agaacccagattcccacggttatgacaaggaccccattgtggacctctggaacatgcggg 46608381
Query: 307 tcgtcttcttctttggcttctccatcgtcttggtccttggcagcacctttgtggcttatc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46608380 tcgtcttcttctttggcttctccatcgtcttggtccttggcagcacctttgtggcttatc 46608321
Query: 367 tgcctgactacagg 380
||| ||||||||||
Sbjct: 46608320 tgcgtgactacagg 46608307
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,629,573
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 6
Length of query: 636
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 615
Effective length of database: 2,808,413,156
Effective search space: 1727174090940
Effective search space used: 1727174090940
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)