Animal-Genome cDNA 20110601C-008395

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008395
         (1569 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095778.1| leucine rich repeat (in FLII) interacting pr...   191   1e-48
Alignment   gi|NP_001033159.1| leucine-rich repeat flightless-interacting p...   180   4e-45
Alignment   gi|NP_001070014.1| fibrous sheath CABYR-binding protein [Bos ta...    55   1e-07
Alignment   gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide...    55   1e-07
Alignment   gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B...    55   1e-07
Alignment   gi|XP_001252037.1| PREDICTED: neurofilament triplet M protein [...    55   1e-07
Alignment   gi|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide ...    52   1e-06
Alignment   gi|XP_870725.3| PREDICTED: neurofilament, heavy polypeptide 200...    52   1e-06

>ref|NP_001095778.1| leucine rich repeat (in FLII) interacting protein 1 [Bos taurus].
          Length = 518

 Score =  191 bits (486), Expect = 1e-48
 Identities = 110/171 (64%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 247 RQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIKD 423
           R    VEER EKDF EKG                              +DTEASIREIKD
Sbjct: 109 RGSLRVEERPEKDFTEKGSRSLPGLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKD 168

Query: 424 SLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFER 603
           SLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+LLELEEQLAESRRQ EEKSKEFER
Sbjct: 169 SLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKSKEFER 228

Query: 604 EKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVE 756
           EKHAHSILQFQFAEVKEALKQREE+LE+   +   + +   E SD    +E
Sbjct: 229 EKHAHSILQFQFAEVKEALKQREEMLEEIRQLQQKQASYIREISDLQETIE 279


>ref|NP_001033159.1| leucine-rich repeat flightless-interacting protein 2 [Bos taurus].
          Length = 400

 Score =  180 bits (456), Expect = 4e-45
 Identities = 98/216 (45%), Positives = 132/216 (61%), Gaps = 1/216 (0%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKEV 264
           MGT GSGRKR P ++R +AED+AL+ I                      M+ELERQQKE+
Sbjct: 1   MGTPGSGRKRTPVKDRFSAEDEALSNIDREAEARLAAKRAARAEARDIRMRELERQQKEL 60

Query: 265 EERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DTEASIREIKDSLAEAE 441
           +E+S+K + +                               L D + S+ E+++SL+E E
Sbjct: 61  DEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRVSGDTSSLIDPDTSLSELRESLSEVE 120

Query: 442 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREKHAHS 621
           EKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEKSKE ER+KH  S
Sbjct: 121 EKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCS 180

Query: 622 ILQFQFAEVKEALKQREELLEKHGIILNSETATNGE 729
           +LQ +  E+KE L+QR+EL+EKHG+++  +   NG+
Sbjct: 181 VLQHKMDELKEGLRQRDELIEKHGLVIIPDGTPNGD 216


>ref|NP_001070014.1| fibrous sheath CABYR-binding protein [Bos taurus].
          Length = 818

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 77/335 (22%), Positives = 118/335 (35%), Gaps = 26/335 (7%)
 Frame = +1

Query: 637  FAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTKEEVGAPQAPGD 816
            F++ KE  ++R+      G I  SE      T+     +  P  ++          +P  
Sbjct: 196  FSKSKEGAQKRKS----SGNIFLSEHPEFQPTTSSNEEIRRPSISRTVSISPTKKDSPVP 251

Query: 817  GTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLPPGETAEAPTTSA 996
                +   VEV     E +   E LP +E    +E PV     P   PP E   +PT  A
Sbjct: 252  LEDEKDVPVEVQPPAAEEISAEEQLPLAETTS-EEVPVAVQPPPAEEPPLEAQPSPTEEA 310

Query: 997  DSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHTAGDGP----EASPGPSE 1164
              G  +   V PT  ++  S   E PP  E   ++Q       AGD      EA+     
Sbjct: 311  P-GDEAPAKVEPTPAEEALS---EKPPAEEALVEIQPSPVEEAAGDEAPAKVEATSSEET 366

Query: 1165 CSRQPDGEIPGPALEQ--------------------DGGNAVESKPQRKESAEKQEGLQT 1284
              ++P  E+  PA E+                    +     E  P  +  AE+   +Q+
Sbjct: 367  LLKEPLTEVQPPAAEEAPIQDTPELQLSPAVEAPAEEAPAEAEPPPAEEAPAEEAPEVQS 426

Query: 1285 TVEERSP--EPPQESAPVQIADVEVERQSGADAGVQSQRPAEAVPEAELPGAGEQVGSGA 1458
               E +P  EPP+  +P    +   E      +    + PAE  PE + P A E   + A
Sbjct: 427  PPAEEAPAEEPPEIQSP-PAEEAPAEEPPEVQSPPAEEAPAEEAPEVQSPPAEE---APA 482

Query: 1459 SSPPGAAMTPVSHRKRGWRMPQRLGPGPECDLEKS 1563
              PP     P      G     +  P  E   E++
Sbjct: 483  EEPPEVQSPPAEEVPAGEPPEVQSPPAEEAPAEEA 517



 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 72/283 (25%), Positives = 108/283 (38%), Gaps = 27/283 (9%)
 Frame = +1

Query: 802  QAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLPPGETAEA 981
            +APGD    +         + E+    E L + +       PV++ A  E       A+ 
Sbjct: 309  EAPGDEAPAKVEPTPAEEALSEKPPAEEALVEIQPS-----PVEEAAGDEA-----PAKV 358

Query: 982  PTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHT-AGDGP-EASPG 1155
              TS++  L       P  E  +Q P  E  P +++T ++Q   A+   A + P EA P 
Sbjct: 359  EATSSEETLLK----EPLTE--VQPPAAEEAP-IQDTPELQLSPAVEAPAEEAPAEAEPP 411

Query: 1156 PSECSRQPDG-EIPGPALEQDGGNA---VESKPQRKESAEKQEGLQTTVEERSP------ 1305
            P+E +   +  E+  P  E+        ++S P  +  AE+   +Q+   E +P      
Sbjct: 412  PAEEAPAEEAPEVQSPPAEEAPAEEPPEIQSPPAEEAPAEEPPEVQSPPAEEAPAEEAPE 471

Query: 1306 --EPPQESAP------VQIADVEVERQSGADAGVQS----QRPAEAVPEAELPGAGEQVG 1449
               PP E AP      VQ    E E  +G    VQS    + PAE  PE + P A E   
Sbjct: 472  VQSPPAEEAPAEEPPEVQSPPAE-EVPAGEPPEVQSPPAEEAPAEEAPEVQSPPAEEVPA 530

Query: 1450 SGASS---PPGAAMTPVSHRKRGWRMPQRLGPGPECDLEKSCP 1569
              A +   PP A   P          P    P  E    +S P
Sbjct: 531  EEALAEVEPPPAEEAPAGEPSEVQSPPAEEAPAEEAPEVQSPP 573


>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 73/342 (21%), Positives = 145/342 (42%), Gaps = 12/342 (3%)
 Frame = +1

Query: 433  EAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVL-LELEEQLAESRRQLEEKSKEFEREK 609
            + + K+ + ++   ++++EK+     +  + + L + ++E++ E   + +E+ +E E E 
Sbjct: 448  KVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSVKEEVKEEEAEEKEEKEEAEEEV 507

Query: 610  HA--HSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTK 783
             A   S ++    E+KE   ++EE   +       E A + +  +  S  E  GS++  +
Sbjct: 508  VAAKKSPVKATAPELKEEEGEKEEEEGQEEEEEEEEAAKSDQAEEGGSEKE--GSSEKEE 565

Query: 784  ---EEVGAPQAPGDG--TLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
               EE G  +A G+G      A E +   E  E V   E L  +E +  K E  K     
Sbjct: 566  GEQEEEGETEAEGEGEEAAAEAKEEKKMEEKAEEVAPKEELA-AEAKVEKPEKAKSPVAK 624

Query: 949  EGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQI-QSPIPEHPPCLENTQQVQSREALHT 1125
                   TA++P   +     S    +PT +  + +SP  + P     + + +S EA   
Sbjct: 625  SPTTKSPTAKSPEAKSPEA-KSPTAKSPTAKSPVAKSPTAKSPTA--KSPEAKSPEAKSP 681

Query: 1126 AGDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQEGLQTTVEERSP 1305
                P A    S  ++ P  + P   ++       E   Q+++  E+++  + + +E   
Sbjct: 682  TAKSPTAK---SPAAKSPAAKSPVEEVKPKAEAGAEKGEQKEKVEEEKKEAKESPKEEKA 738

Query: 1306 EPPQESAPVQIADVEVERQSGADAGVQSQRPAEAV---PEAE 1422
            E  +E A       + E    A++ V+ + PA+ V   PE E
Sbjct: 739  EKKEEKAKDVPEKKKAESPVKAESPVKEEVPAKPVKVSPEKE 780


>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 74/344 (21%), Positives = 144/344 (41%), Gaps = 14/344 (4%)
 Frame = +1

Query: 433  EAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVL-LELEEQLAESRRQLEEKSKEFEREK 609
            + + K+ + ++   ++++EK+     +  + + L + ++E++ E   + +E+ +E E E 
Sbjct: 448  KVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSVKEEVKEEEAEEKEEKEEAEEEV 507

Query: 610  HA--HSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTK 783
             A   S ++    E+KE   ++EE   +       E A + +  +  S  E  GS++  +
Sbjct: 508  VAAKKSPVKATAPELKEEEGEKEEEEGQEEEEEEEEAAKSDQAEEGGSEKE--GSSEKEE 565

Query: 784  ---EEVGAPQAPGDG--TLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
               EE G  +A G+G      A E +   E  E V   E L  +E +  K E  K    P
Sbjct: 566  GEQEEEGETEAEGEGEEAAAEAKEEKKMEEKAEEVAPKEELA-AEAKVEKPEKAKS---P 621

Query: 949  EGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENT---QQVQSREAL 1119
                P  T ++PT  + +  S             +SP+ + P     T    + +S EA 
Sbjct: 622  VAKSP--TTKSPTAKSPTAKSPEAKSPTAKSPTAKSPVAKSPTAKSPTAKSPEAKSPEAK 679

Query: 1120 HTAGDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQEGLQTTVEER 1299
                  P A    S  ++ P  + P   ++       E   Q+++  E+++  + + +E 
Sbjct: 680  SPTAKSPTAK---SPAAKSPAAKSPVEEVKPKAEAGAEKGEQKEKVEEEKKEAKESPKEE 736

Query: 1300 SPEPPQESAPVQIADVEVERQSGADAGVQSQRPAEAV---PEAE 1422
              E  +E A       + E    A++ V+ + PA+ V   PE E
Sbjct: 737  KAEKKEEKAKDVPEKKKAESPVKAESPVKEEVPAKPVKVSPEKE 780


>ref|XP_001252037.1| PREDICTED: neurofilament triplet M protein [Bos taurus].
          Length = 931

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 74/344 (21%), Positives = 144/344 (41%), Gaps = 14/344 (4%)
 Frame = +1

Query: 433  EAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVL-LELEEQLAESRRQLEEKSKEFEREK 609
            + + K+ + ++   ++++EK+     +  + + L + ++E++ E   + +E+ +E E E 
Sbjct: 448  KVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSVKEEVKEEEAEEKEEKEEAEEEV 507

Query: 610  HA--HSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTK 783
             A   S ++    E+KE   ++EE   +       E A + +  +  S  E  GS++  +
Sbjct: 508  VAAKKSPVKATAPELKEEEGEKEEEEGQEEEEEEEEAAKSDQAEEGGSEKE--GSSEKEE 565

Query: 784  ---EEVGAPQAPGDG--TLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
               EE G  +A G+G      A E +   E  E V   E L  +E +  K E  K    P
Sbjct: 566  GEQEEEGETEAEGEGEEAAAEAKEEKKMEEKAEEVAPKEELA-AEAKVEKPEKAKS---P 621

Query: 949  EGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENT---QQVQSREAL 1119
                P  T ++PT  + +  S             +SP+ + P     T    + +S EA 
Sbjct: 622  VAKSP--TTKSPTAKSPTAKSPEAKSPTAKSPTAKSPVAKSPTAKSPTAKSPEAKSPEAK 679

Query: 1120 HTAGDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQEGLQTTVEER 1299
                  P A    S  ++ P  + P   ++       E   Q+++  E+++  + + +E 
Sbjct: 680  SPTAKSPTAK---SPAAKSPAAKSPVEEVKPKAEAGAEKGEQKEKVEEEKKEAKESPKEE 736

Query: 1300 SPEPPQESAPVQIADVEVERQSGADAGVQSQRPAEAV---PEAE 1422
              E  +E A       + E    A++ V+ + PA+ V   PE E
Sbjct: 737  KAEKKEEKAKDVPEKKKAESPVKAESPVKEEVPAKPVKVSPEKE 780


>ref|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like isoform 2
            [Bos taurus].
          Length = 1023

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 77/367 (20%), Positives = 143/367 (38%), Gaps = 40/367 (10%)
 Frame = +1

Query: 526  DVLLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVK-----------EALKQRE 672
            D +   +E+++E RRQL+ ++ E E  K     L+ Q +E++           EA++Q +
Sbjct: 302  DAMRSAQEEISEYRRQLQARTTELETLKSTKDSLERQRSELEDRHQADIASYQEAIQQLD 361

Query: 673  -EL----------LEKHGIILNSETATNGETSDPLSRVEHP------GSTKMTKEEVGAP 801
             EL          L ++  +LN + A + E +     +E        G +     E G P
Sbjct: 362  AELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFLLPE-GLP 420

Query: 802  QAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHK------EEPVKDCADPEG--- 954
            + P   T  +    E   +MVE+  K  ++ + + E+ +      EE  K+  + EG   
Sbjct: 421  KIPSVSTHIKVKSEEKI-KMVEKSEKETVIVEEQTEEVQVTEEVTEEEEKEAKEEEGEAV 479

Query: 955  -LPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHTAG 1131
              PP E A +P                 +  + +SP     P  E  +  Q  EA   A 
Sbjct: 480  KSPPAEEAASPEKE-----------EAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAE 528

Query: 1132 -DGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQEGLQTTVEERSPE 1308
               PE +  P E       + P   ++++  +  ++K   KE A+  E  ++  + +SP 
Sbjct: 529  VKSPEKAKSPVEAKSPEKAKSP---VKEEAKSPEKAKSPEKEEAKSPEKAKSPEKAKSPV 585

Query: 1309 PPQESAPVQIADVEVERQSGADAGVQSQRPAEAV-PEAELPGAGEQVGSGASSPPGAAMT 1485
              +  +PV+    E  +    +     ++    V  EA+ P   +      +  P  A +
Sbjct: 586  KEEAKSPVEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKS 645

Query: 1486 PVSHRKR 1506
            PV    +
Sbjct: 646  PVKEEAK 652


>ref|XP_870725.3| PREDICTED: neurofilament, heavy polypeptide 200kDa-like isoform 2
            [Bos taurus].
          Length = 1023

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 77/367 (20%), Positives = 143/367 (38%), Gaps = 40/367 (10%)
 Frame = +1

Query: 526  DVLLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVK-----------EALKQRE 672
            D +   +E+++E RRQL+ ++ E E  K     L+ Q +E++           EA++Q +
Sbjct: 302  DAMRSAQEEISEYRRQLQARTTELETLKSTKDSLERQRSELEDRHQADIASYQEAIQQLD 361

Query: 673  -EL----------LEKHGIILNSETATNGETSDPLSRVEHP------GSTKMTKEEVGAP 801
             EL          L ++  +LN + A + E +     +E        G +     E G P
Sbjct: 362  AELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFLLPE-GLP 420

Query: 802  QAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHK------EEPVKDCADPEG--- 954
            + P   T  +    E   +MVE+  K  ++ + + E+ +      EE  K+  + EG   
Sbjct: 421  KIPSVSTHIKVKSEEKI-KMVEKSEKETVIVEEQTEEVQVTEEVTEEEEKEAKEEEGEAV 479

Query: 955  -LPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHTAG 1131
              PP E A +P                 +  + +SP     P  E  +  Q  EA   A 
Sbjct: 480  KSPPAEEAASPEKE-----------EAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAE 528

Query: 1132 -DGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQEGLQTTVEERSPE 1308
               PE +  P E       + P   ++++  +  ++K   KE A+  E  ++  + +SP 
Sbjct: 529  VKSPEKAKSPVEAKSPEKAKSP---VKEEAKSPEKAKSPEKEEAKSPEKAKSPEKAKSPV 585

Query: 1309 PPQESAPVQIADVEVERQSGADAGVQSQRPAEAV-PEAELPGAGEQVGSGASSPPGAAMT 1485
              +  +PV+    E  +    +     ++    V  EA+ P   +      +  P  A +
Sbjct: 586  KEEAKSPVEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKS 645

Query: 1486 PVSHRKR 1506
            PV    +
Sbjct: 646  PVKEEAK 652


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.304    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,313,805
Number of extensions: 1630395
Number of successful extensions: 12355
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11977
Number of HSP's successfully gapped: 11
Length of query: 523
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 416
Effective length of database: 14,140,958
Effective search space: 5882638528
Effective search space used: 5882638528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008395
         (1569 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_859424.1| PREDICTED: similar to leucine rich repeat (in F...   181   2e-45
Alignment   gi|XP_534615.2| PREDICTED: similar to leucine rich repeat (in F...   176   4e-44
Alignment   gi|XP_859385.1| PREDICTED: similar to leucine rich repeat (in F...   171   2e-42
Alignment   gi|XP_542701.2| PREDICTED: similar to leucine rich repeat (in F...   127   3e-29
Alignment   gi|XP_859348.1| PREDICTED: similar to leucine rich repeat (in F...   114   2e-25
Alignment   gi|XP_531784.2| PREDICTED: similar to Eukaryotic translation in...    56   8e-08
Alignment   gi|XP_863410.1| PREDICTED: similar to Eukaryotic translation in...    56   8e-08
Alignment   gi|XP_851262.1| PREDICTED: similar to Eukaryotic translation in...    56   8e-08
Alignment   gi|XP_863455.1| PREDICTED: similar to Eukaryotic translation in...    53   9e-07
Alignment   gi|XP_867968.1| PREDICTED: similar to Midasin (MIDAS-containing...    52   2e-06

>ref|XP_859424.1| PREDICTED: similar to leucine rich repeat (in FLII) interacting
           protein 2 isoform 2 isoform 4 [Canis familiaris].
          Length = 400

 Score =  181 bits (458), Expect = 2e-45
 Identities = 104/249 (41%), Positives = 147/249 (59%), Gaps = 2/249 (0%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKEV 264
           MGT GSGRKR P ++R +AED+AL+ I                      M+ELERQQKE+
Sbjct: 1   MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQKEL 60

Query: 265 EERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DTEASIREIKDSLAEAE 441
           +E+S+K + +                               L D + S+ E+++SL+E E
Sbjct: 61  DEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLVDPDTSLSELRESLSEVE 120

Query: 442 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREKHAHS 621
           EKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEKSKE ER+KH  S
Sbjct: 121 EKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCS 180

Query: 622 ILQFQFAEVKEALKQREELLEKHGIILNSETATNGETS-DPLSRVEHPGSTKMTKEEVGA 798
           +LQ +  E+KE L+QR+EL+EKHG+++  +   NG+ + +P+        T +++E    
Sbjct: 181 VLQHKMDELKEGLRQRDELIEKHGLVIIPDGTPNGDVNHEPVV----GAITVVSQEAAQV 236

Query: 799 PQAPGDGTL 825
            ++ G+G L
Sbjct: 237 LESAGEGPL 245


>ref|XP_534615.2| PREDICTED: similar to leucine rich repeat (in FLII) interacting
           protein 1 [Canis familiaris].
          Length = 748

 Score =  176 bits (447), Expect = 4e-44
 Identities = 109/195 (55%), Positives = 118/195 (60%), Gaps = 25/195 (12%)
 Frame = +1

Query: 247 RQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIK- 420
           R    VEER EKDF EKG                              +DTEASIREIK 
Sbjct: 315 RASPVVEERPEKDFTEKGSRSLPGLSAATLASLGGTSSRRGSGDTSISVDTEASIREIKE 374

Query: 421 -----------------------DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDV 531
                                  DSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+
Sbjct: 375 LSELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDM 434

Query: 532 LLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSE 711
           LLELEEQLAESRRQ E+KSKEFEREKHAHSILQFQFAEVKEALKQREE+LE+   +   +
Sbjct: 435 LLELEEQLAESRRQYEDKSKEFEREKHAHSILQFQFAEVKEALKQREEMLEEIRQLQQKQ 494

Query: 712 TATNGETSDPLSRVE 756
            +   E SD    +E
Sbjct: 495 ASYIREISDLQETIE 509


>ref|XP_859385.1| PREDICTED: similar to leucine rich repeat (in FLII) interacting
           protein 2 isoform 2 isoform 3 [Canis familiaris].
          Length = 415

 Score =  171 bits (432), Expect = 2e-42
 Identities = 104/264 (39%), Positives = 147/264 (55%), Gaps = 17/264 (6%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKE- 261
           MGT GSGRKR P ++R +AED+AL+ I                      M+ELERQQKE 
Sbjct: 1   MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQKEG 60

Query: 262 --------------VEERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DT 396
                         ++E+S+K + +                               L D 
Sbjct: 61  VEDALSIRSLGSHRLDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLVDP 120

Query: 397 EASIREIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQL 576
           + S+ E+++SL+E EEKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ 
Sbjct: 121 DTSLSELRESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYREN 180

Query: 577 EEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETS-DPLSRV 753
           EEKSKE ER+KH  S+LQ +  E+KE L+QR+EL+EKHG+++  +   NG+ + +P+   
Sbjct: 181 EEKSKELERQKHMCSVLQHKMDELKEGLRQRDELIEKHGLVIIPDGTPNGDVNHEPVV-- 238

Query: 754 EHPGSTKMTKEEVGAPQAPGDGTL 825
                T +++E     ++ G+G L
Sbjct: 239 --GAITVVSQEAAQVLESAGEGPL 260


>ref|XP_542701.2| PREDICTED: similar to leucine rich repeat (in FLII) interacting
           protein 2 isoform 1 isoform 1 [Canis familiaris].
          Length = 721

 Score =  127 bits (319), Expect = 3e-29
 Identities = 62/95 (65%), Positives = 80/95 (84%)
 Frame = +1

Query: 406 IREIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEK 585
           ++E+K+SL+E EEKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEK
Sbjct: 365 LKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEK 424

Query: 586 SKEFEREKHAHSILQFQFAEVKEALKQREELLEKH 690
           SKE ER+KH  S+LQ +  E+KE L+QR+EL+E++
Sbjct: 425 SKELERQKHMCSVLQHKMDELKEGLRQRDELIEEN 459


>ref|XP_859348.1| PREDICTED: similar to leucine rich repeat (in FLII) interacting
           protein 2 isoform 2 isoform 2 [Canis familiaris].
          Length = 274

 Score =  114 bits (286), Expect = 2e-25
 Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
 Frame = +1

Query: 460 MVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQF 639
           MVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEKSKE ER+KH  S+LQ + 
Sbjct: 1   MVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKM 60

Query: 640 AEVKEALKQREELLEKHGIILNSETATNGETS-DPLSRVEHPGSTKMTKEEVGAPQAPGD 816
            E+KE L+QR+EL+EKHG+++  +   NG+ + +P+        T +++E     ++ G+
Sbjct: 61  DELKEGLRQRDELIEKHGLVIIPDGTPNGDVNHEPVV----GAITVVSQEAAQVLESAGE 116

Query: 817 GTL 825
           G L
Sbjct: 117 GPL 119


>ref|XP_531784.2| PREDICTED: similar to Eukaryotic translation initiation factor 5B
            (eIF-5B) (Translation initiation factor IF-2) isoform 1
            [Canis familiaris].
          Length = 1180

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 12/289 (4%)
 Frame = +1

Query: 439  EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFE----RE 606
            ++K KK      + + +K      V  +++ L +L+E+    +R+ EE+ K  E    + 
Sbjct: 317  DKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKR 376

Query: 607  KHAHSILQFQFAEVKEALKQREELLEKHGIILNS---ETATNGETSDPLSR---VEHPGS 768
            K    + Q +    K+  K+R+E L+K G +L     E     E +  L +   VE P  
Sbjct: 377  KEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSK 436

Query: 769  TKMTKEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
              + K+           TL +    EV+ E +E     E++     E  KEE       P
Sbjct: 437  DSLPKKRPIYEDKKKKKTLQQLENKEVS-EPIELSAAVEVVEQGVPE--KEET------P 487

Query: 949  EGLPPGETAEAPTTSADS--GLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALH 1122
              + P E  E   T  D    ++S        E+ +   + E+P   E  ++ +  E+  
Sbjct: 488  PPVEPEEEEETEDTGLDDWEAMASDEEREKVEENTVHIEVKENP---EEEEEEEEEESEE 544

Query: 1123 TAGDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQ 1269
               +  E   G SE S + D E    + E+D G  ++ KP ++ S+E +
Sbjct: 545  EESEEEEEEEGESEGS-EGDEEDEKVSDEKDAGKMLDKKPSKEMSSESE 592


>ref|XP_863410.1| PREDICTED: similar to Eukaryotic translation initiation factor 5B
            (eIF-5B) (Translation initiation factor IF-2) isoform 3
            [Canis familiaris].
          Length = 1087

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 12/289 (4%)
 Frame = +1

Query: 439  EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFE----RE 606
            ++K KK      + + +K      V  +++ L +L+E+    +R+ EE+ K  E    + 
Sbjct: 184  DKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKR 243

Query: 607  KHAHSILQFQFAEVKEALKQREELLEKHGIILNS---ETATNGETSDPLSR---VEHPGS 768
            K    + Q +    K+  K+R+E L+K G +L     E     E +  L +   VE P  
Sbjct: 244  KEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSK 303

Query: 769  TKMTKEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
              + K+           TL +    EV+ E +E     E++     E  KEE       P
Sbjct: 304  DSLPKKRPIYEDKKKKKTLQQLENKEVS-EPIELSAAVEVVEQGVPE--KEET------P 354

Query: 949  EGLPPGETAEAPTTSADS--GLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALH 1122
              + P E  E   T  D    ++S        E+ +   + E+P   E  ++ +  E+  
Sbjct: 355  PPVEPEEEEETEDTGLDDWEAMASDEEREKVEENTVHIEVKENP---EEEEEEEEEESEE 411

Query: 1123 TAGDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQ 1269
               +  E   G SE S + D E    + E+D G  ++ KP ++ S+E +
Sbjct: 412  EESEEEEEEEGESEGS-EGDEEDEKVSDEKDAGKMLDKKPSKEMSSESE 459


>ref|XP_851262.1| PREDICTED: similar to Eukaryotic translation initiation factor 5B
            (eIF-5B) (Translation initiation factor IF-2) isoform 2
            [Canis familiaris].
          Length = 1220

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 12/289 (4%)
 Frame = +1

Query: 439  EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFE----RE 606
            ++K KK      + + +K      V  +++ L +L+E+    +R+ EE+ K  E    + 
Sbjct: 317  DKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKR 376

Query: 607  KHAHSILQFQFAEVKEALKQREELLEKHGIILNS---ETATNGETSDPLSR---VEHPGS 768
            K    + Q +    K+  K+R+E L+K G +L     E     E +  L +   VE P  
Sbjct: 377  KEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSK 436

Query: 769  TKMTKEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
              + K+           TL +    EV+ E +E     E++     E  KEE       P
Sbjct: 437  DSLPKKRPIYEDKKKKKTLQQLENKEVS-EPIELSAAVEVVEQGVPE--KEET------P 487

Query: 949  EGLPPGETAEAPTTSADS--GLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALH 1122
              + P E  E   T  D    ++S        E+ +   + E+P   E  ++ +  E+  
Sbjct: 488  PPVEPEEEEETEDTGLDDWEAMASDEEREKVEENTVHIEVKENP---EEEEEEEEEESEE 544

Query: 1123 TAGDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQ 1269
               +  E   G SE S + D E    + E+D G  ++ KP ++ S+E +
Sbjct: 545  EESEEEEEEEGESEGS-EGDEEDEKVSDEKDAGKMLDKKPSKEMSSESE 592


>ref|XP_863455.1| PREDICTED: similar to Eukaryotic translation initiation factor 5B
            (eIF-5B) (Translation initiation factor IF-2) isoform 4
            [Canis familiaris].
          Length = 1215

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 59/286 (20%), Positives = 117/286 (40%), Gaps = 9/286 (3%)
 Frame = +1

Query: 439  EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFE----RE 606
            ++K KK      + + +K      V  +++ L +L+E+    +R+ EE+ K  E    + 
Sbjct: 317  DKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKR 376

Query: 607  KHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTKE 786
            K    + Q +    K+  K+R+E L+K G +L          S   +R     + K+ + 
Sbjct: 377  KEEERLEQEKRERKKQKEKERKERLKKEGKLLTK--------SQREARARAEATLKLLQA 428

Query: 787  EVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLPPG 966
            +    + P   +L +   +    +  + + + E     EQ   ++E      +PEG   G
Sbjct: 429  Q--GVEVPSKDSLPKKRPIYEDKKKKKTLQQLENKEVVEQGVPEKEETPPPVEPEG-EAG 485

Query: 967  ETAEAPTTSADSGLSSGIFV-----NPTNEDQIQSPIPEHPPCLENTQQVQSREALHTAG 1131
                 P    D+GL     +         E+ +   + E+P   E  ++ +  E+     
Sbjct: 486  SMHREPDVGEDTGLDDWEAMASDEEREKEENTVHIEVKENP---EEEEEEEEEESEEEES 542

Query: 1132 DGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQ 1269
            +  E   G SE S + D E    + E+D G  ++ KP ++ S+E +
Sbjct: 543  EEEEEEEGESEGS-EGDEEDEKVSDEKDAGKMLDKKPSKEMSSESE 587


>ref|XP_867968.1| PREDICTED: similar to Midasin (MIDAS-containing protein) isoform 2
            [Canis familiaris].
          Length = 5517

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 89/401 (22%), Positives = 143/401 (35%), Gaps = 39/401 (9%)
 Frame = +1

Query: 421  DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTL---------KDVLLELEEQLAESRRQ 573
            D   E EE+  K   +   +D E    + + D             V  E EE       Q
Sbjct: 4705 DEEEEEEEEDSKTEETGPGMDEEDCGLVAKDDNSDAGKSNKDKNQVKEEKEEAEVADDGQ 4764

Query: 574  LEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSD----- 738
             ++K  E   E+         +   +E L + E L     + L+SE    GE +D     
Sbjct: 4765 GQDKINEQIDEREYDENEVDPYHGNQEKLPEPEALDLPDDLNLDSEDKNGGEDTDHEEGE 4824

Query: 739  --PLSRVEHPGSTKMT-------KEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEIL 891
              PL   E P  T+         KEE+ A  + G G      E     E  E   + +  
Sbjct: 4825 ENPLEIKEKPMDTEEAGHEAEEIKEEIEADHSEGQGQ-HEPEEGPSEEEKGEEEEEMDTG 4883

Query: 892  PDSEQEQHKEEPVKDCADPEGLPPGETAEAPTTSADSGLSSGIFVNPTNED-----QIQS 1056
             + + +   E P +D  D       +  EA   SA++G+     + P  E+       + 
Sbjct: 4884 TNGQDKDTAEHPEEDSEDEHHSLEDKDEEASKGSAENGVPVDQGLQPQEEEGGENSDTEE 4943

Query: 1057 PIPE------HPPCLEN-TQQVQSREALHTAGDGPEASPGPSECSRQPDGEIPGPALEQD 1215
             +PE      H  C +   + VQS +A+  AG  PE   G  E      G       E  
Sbjct: 4944 QVPEATERKEHDSCGQTGLESVQSAQAVELAGTAPEKEQGKEE---HGSGAADANQAEGH 5000

Query: 1216 GGNAVESKPQRKESAEKQEGLQ----TTVEERSPEPPQESAPVQIADVEVERQSGADAGV 1383
              N +     +K++ +  +  +        ERS     E    ++  V++E  +      
Sbjct: 5001 ESNFIARLASQKQTRKNTQSFKRKPGQADNERSMGDHSEHVHKRLKTVDMENHT------ 5054

Query: 1384 QSQRPAEAVPEAELPGAGEQVGSGASSPPGAAMTPVSHRKR 1506
              Q PA+  P+AE   A E +  G S P  A M  V+ +++
Sbjct: 5055 -EQGPAQPQPQAEDADAFEHIKQG-SDPYDAQMYDVASKEQ 5093


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.304    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,495,051
Number of extensions: 1643277
Number of successful extensions: 12953
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 12548
Number of HSP's successfully gapped: 13
Length of query: 523
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 416
Effective length of database: 15,307,552
Effective search space: 6367941632
Effective search space used: 6367941632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008395
         (1569 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003361027.1| PREDICTED: leucine-rich repeat flightless-in...   194   9e-50
Alignment   gi|XP_003358406.1| PREDICTED: leucine-rich repeat flightless-in...   127   2e-29
Alignment   gi|XP_003124939.1| PREDICTED: eukaryotic translation initiation...    55   8e-08
Alignment   gi|XP_003356042.1| PREDICTED: serine/threonine-protein kinase L...    54   3e-07
Alignment   gi|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [...    51   2e-06

>ref|XP_003361027.1| PREDICTED: leucine-rich repeat flightless-interacting protein
           2-like [Sus scrofa].
          Length = 595

 Score =  194 bits (494), Expect = 9e-50
 Identities = 130/279 (46%), Positives = 143/279 (51%), Gaps = 86/279 (30%)
 Frame = +1

Query: 247 RQQKEVEERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIK-- 420
           R    VEERSEKDFEKG                              LDTEASIREIK  
Sbjct: 163 RASPVVEERSEKDFEKGSRSLPSLSAATLASLGGTSSRRGSGDTSISLDTEASIREIKEL 222

Query: 421 ----------------------DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVL 534
                                 DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVL
Sbjct: 223 NELKDQIQDVEGRYMQGLKEMKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVL 282

Query: 535 LELEEQLAESR-----------------------------------------RQLEEKSK 591
           LELEEQLAESR                                         RQL++K +
Sbjct: 283 LELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEEIRQLQQKQE 342

Query: 592 E---------------------FEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNS 708
                                  ER+K     ++ +  +++E +   +E L+KHGIILNS
Sbjct: 343 SXXXXXXXXKETIEWKDKKIGALERQKEFFDSIRSERDDLREEVVVLKEELKKHGIILNS 402

Query: 709 ETATNGETSDPLSRVEHPGSTKMTKEEVGAPQAPGDGTL 825
           ETATNGETSDPLSRVEHPGSTKMTKEEVGAPQAPGDGTL
Sbjct: 403 ETATNGETSDPLSRVEHPGSTKMTKEEVGAPQAPGDGTL 441


>ref|XP_003358406.1| PREDICTED: leucine-rich repeat flightless-interacting protein 2
           [Sus scrofa].
          Length = 703

 Score =  127 bits (318), Expect = 2e-29
 Identities = 62/95 (65%), Positives = 80/95 (84%)
 Frame = +1

Query: 406 IREIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEK 585
           ++E+K+SL+E EEKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEK
Sbjct: 347 LKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFFRENEEK 406

Query: 586 SKEFEREKHAHSILQFQFAEVKEALKQREELLEKH 690
           SKE ER+KH  S+LQ +  E+KE L+QR+EL+E++
Sbjct: 407 SKELERQKHMCSVLQHKMDELKEGLRQRDELIEEN 441


>ref|XP_003124939.1| PREDICTED: eukaryotic translation initiation factor 5B [Sus scrofa].
          Length = 1219

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 60/287 (20%), Positives = 119/287 (41%), Gaps = 10/287 (3%)
 Frame = +1

Query: 439  EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFE----RE 606
            ++K KK      + + +K      V  +++ L +L+E+    +R+ EE+ K  E    + 
Sbjct: 318  DKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKR 377

Query: 607  KHAHSILQFQFAEVKEALKQREELLEKHGIILN-SETATNGETSDPLSRVEHPGSTKMTK 783
            K    + Q +    K+  K+R+E L+K G +L  S+          L  ++  G    +K
Sbjct: 378  KEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSK 437

Query: 784  EEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLPP 963
            + +   +   +    + +  ++ N++ E V  S  +   EQ +         A+ E  PP
Sbjct: 438  DSLPKKRPIYEDKKKKKTPQQLENKVSEPVDLSASVEVVEQGE---------AEKEETPP 488

Query: 964  GETAEAPTTSADSGLSSGIFVNPTNEDQIQS-----PIPEHPPCLENTQQVQSREALHTA 1128
                E    + D+GL     +    E + +       + E+P   E  ++ +  E     
Sbjct: 489  PVEPEEEEETEDAGLDDWEAMASDEETETEGNTVHIEVKENP---EEEEEEEEEEEEEEE 545

Query: 1129 GDGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKESAEKQ 1269
             +  E   G SE S + D E    + E+D G  ++ KP ++ S+E +
Sbjct: 546  SEEEEEEEGESEGS-EADEEDEKVSDEKDAGKTLDKKPSKEVSSESE 591


>ref|XP_003356042.1| PREDICTED: serine/threonine-protein kinase LMTK3 [Sus scrofa].
          Length = 1491

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 38/277 (13%)
 Frame = +1

Query: 709  ETATNGETSDPLSRVEHPGSTKMTKEEVGAPQAPGDGTL------------------GRA 834
            ETA       P S V  PG+ +   E  GAP+APG G L                  G  
Sbjct: 1104 ETAPGPTGPAPRSGVLEPGTERRAPETGGAPRAPGAGRLDLGSGARAPVGMGMAPGGGLG 1163

Query: 835  SEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLPPGETAEAPTTSADSGLSS 1014
            S V+     V+ +     LP  E +  + EP+   A  E +P GE    P + A   ++ 
Sbjct: 1164 SGVDAKAGWVDSMRPQPPLPPPEAQPRRPEPMLQRARQEVVPEGEPG-VPDSKAGGDMAP 1222

Query: 1015 GIFVNPTNEDQIQSPIP----EHPPCLENTQQVQSR-EALHTA----------GDGPEAS 1149
                +P   ++    +P    +  P   N++Q++++   L  A          G GP   
Sbjct: 1223 SGDADPPKPERKGPEMPRLFLDLGPPQGNSEQIKAKLSRLSLALPPLTLTPFPGPGPRRP 1282

Query: 1150 PGPSECSRQPDGE-----IPGPALEQDGGNAVESKPQRKESAEKQEGLQTTVEERSPEPP 1314
            P     +  P GE      PGPA E+DG +  E + + +E+A            R+   P
Sbjct: 1283 PWEGADAGAPGGEAGGAGAPGPA-EEDGEDEDEDEEEDEEAAAAGAAAGPRGPGRARAAP 1341

Query: 1315 QESAPVQIADVEVERQSGADAGVQSQRPAEAVPEAEL 1425
                PV ++  + +        ++S R A+   ++EL
Sbjct: 1342 ---VPVVVSSTDADAARPLRGLLKSPRGADEPEDSEL 1375


>ref|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [Sus scrofa].
          Length = 1049

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 78/377 (20%), Positives = 145/377 (38%), Gaps = 50/377 (13%)
 Frame = +1

Query: 526  DVLLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVK-----------EALKQRE 672
            D +   +E++ E RRQL+ ++ E E  K     L+ Q +E++           EA++Q +
Sbjct: 304  DAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEAIQQLD 363

Query: 673  -EL----------LEKHGIILNSETATNGETSDPLSRVEHP------GSTKMTKEEVGAP 801
             EL          L ++  +LN + A + E +     +E        G +  +  E G P
Sbjct: 364  AELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLPE-GLP 422

Query: 802  QAPGDGTLGRASEVE-------------VANEMVERVGKSEILPDSEQEQHKEEPVKDCA 942
            + P   T  +    E             +  E  E V  +E + + E+++ KEE  K+  
Sbjct: 423  KIPSISTHIKVKSEEKIKVVEKSEKETVIVEEQTEEVQVTEEVTEEEEKEAKEEEAKEEE 482

Query: 943  DPEGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALH 1122
              E     E A++P   A +            +++ +SP+ E     E  +     EA  
Sbjct: 483  ARE-----EEAKSPLAEAAAS---------PEKEEAKSPVKEEAKSPEKEEAKSPAEAKS 528

Query: 1123 TAGD---GPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQR-----KESAEKQEGL 1278
               +    PE +  P +   +   E   P  E+         P++     KE A+  E  
Sbjct: 529  PVKEEVKSPEKAKSPLKEEAKSPAEAKSPEKEEAKSPVEVKSPEKAKSPVKEEAKSPEKA 588

Query: 1279 QTTVEERSPEPPQESAPVQIADVEVER-QSGADAGVQSQRPAEAVPEAELPGAGEQVGSG 1455
            ++ V+E +  P +  +PV+      E+ +S      +S   A++  +A+ P   E     
Sbjct: 589  KSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPE 648

Query: 1456 ASSPPGAAMTPVSHRKR 1506
             +  P  A +PV    +
Sbjct: 649  KAKSPEKAKSPVKEEAK 665


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.304    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,649,109
Number of extensions: 1128511
Number of successful extensions: 7920
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7667
Number of HSP's successfully gapped: 6
Length of query: 523
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 420
Effective length of database: 8,779,541
Effective search space: 3687407220
Effective search space used: 3687407220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008395
         (1569 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001104781.1| leucine-rich repeat flightless-interacting p...   352   6e-97
Alignment   gi|NP_001104782.1| leucine-rich repeat flightless-interacting p...   293   2e-79
Alignment   gi|NP_082018.1| leucine-rich repeat flightless-interacting prot...   180   2e-45
Alignment   gi|NP_032541.1| leucine-rich repeat flightless-interacting prot...   172   5e-43
Alignment   gi|NP_001158310.1| leucine-rich repeat flightless-interacting p...   170   2e-42

>ref|NP_001104781.1| leucine-rich repeat flightless-interacting protein 1 isoform 1 [Mus
            musculus].
          Length = 729

 Score =  352 bits (902), Expect = 6e-97
 Identities = 207/386 (53%), Positives = 243/386 (62%), Gaps = 4/386 (1%)
 Frame = +1

Query: 232  MKELERQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASI 408
            MKELERQQKEVEER +KDF EKG                              +DTEASI
Sbjct: 42   MKELERQQKEVEERPDKDFAEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASI 101

Query: 409  REIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKS 588
            REIKDSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+LLELEEQLAES+RQ EEK+
Sbjct: 102  REIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKN 161

Query: 589  KEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGS 768
            KEFEREKHAHSILQFQFAEVKEAL+QREE+LEKHGIILNSE ATNGETSD ++ V +   
Sbjct: 162  KEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTVNDVGYQAP 221

Query: 769  TKMTKEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
            TK+TKEE+ A ++ G+GTLG+A EVEV  E+VE+VG+ E L +SEQEQ K    KDC D 
Sbjct: 222  TKITKEELNALKSAGEGTLGKAKEVEVKKEIVEKVGQRETLQNSEQEQPKPNTGKDCVDR 281

Query: 949  EGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHTA 1128
                PGE AE    + DS LS G       E Q+QS   E+   L+N++Q++S +  + +
Sbjct: 282  GVSHPGEKAENQRPAEDSALSPGPLAGAKCEQQVQSQDQENTSDLKNSEQIESHKVTNKS 341

Query: 1129 GDGPEASPGPSECSRQPDGEIPGPA--LEQD-GGNAVESKPQRKESAEKQEGLQTTVEER 1299
                  SP  S C    D E+PGP   L+ D G  + E  P        +    T  + R
Sbjct: 342  DSRASNSPEQSSCLEGLDSEVPGPTEDLKTDLGKGSFEPCPDYILGQTAEIDKVTCTDSR 401

Query: 1300 SPEPPQESAPVQIADVEVERQSGADA 1377
                 Q    VQ  D  VE Q G  A
Sbjct: 402  GTGGNQREDEVQAGDTTVEDQVGTVA 427


>ref|NP_001104782.1| leucine-rich repeat flightless-interacting protein 1 isoform 3 [Mus
           musculus].
          Length = 428

 Score =  293 bits (751), Expect = 2e-79
 Identities = 169/274 (61%), Positives = 184/274 (67%), Gaps = 25/274 (9%)
 Frame = +1

Query: 79  MDMGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQK 258
           MDMGTQGSGRKRLPNRERLTAEDDALNQI                      MKELERQQK
Sbjct: 1   MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQK 60

Query: 259 EVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIK----- 420
           EVEER +KDF EKG                              +DTEASIREIK     
Sbjct: 61  EVEERPDKDFAEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNEL 120

Query: 421 -------------------DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLEL 543
                              DSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+LLEL
Sbjct: 121 KDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLEL 180

Query: 544 EEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATN 723
           EEQLAES+RQ EEK+KEFEREKHAHSILQFQFAEVKEAL+QREE+LEKHGIILNSE ATN
Sbjct: 181 EEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATN 240

Query: 724 GETSDPLSRVEHPGSTKMTKEEVGAPQAPGDGTL 825
           GETSD ++ V +   TK+TKEE+ A ++ G+GTL
Sbjct: 241 GETSDTVNDVGYQAPTKITKEELNALKSAGEGTL 274


>ref|NP_082018.1| leucine-rich repeat flightless-interacting protein 2 isoform 2 [Mus
           musculus].
          Length = 400

 Score =  180 bits (457), Expect = 2e-45
 Identities = 103/249 (41%), Positives = 147/249 (59%), Gaps = 2/249 (0%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKEV 264
           MGT GSGRKR P ++R +AED+AL+ I                      M+ELERQQ+E+
Sbjct: 1   MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQREL 60

Query: 265 EERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DTEASIREIKDSLAEAE 441
           +E+S+K + +                               L D + S+ E+++SL+E E
Sbjct: 61  DEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRESLSEVE 120

Query: 442 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREKHAHS 621
           EKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEKSKE ER+KH  S
Sbjct: 121 EKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCS 180

Query: 622 ILQFQFAEVKEALKQREELLEKHGIILNSETATNGET-SDPLSRVEHPGSTKMTKEEVGA 798
           +LQ +  E+KE L+QR+EL+EKHG+++  ++  NG+   +P+        T +++E    
Sbjct: 181 VLQHKMDELKEGLRQRDELIEKHGLVIIPDSTPNGDVHHEPVV----GAITAVSQEAAQV 236

Query: 799 PQAPGDGTL 825
            ++ G+G L
Sbjct: 237 LESAGEGPL 245


>ref|NP_032541.1| leucine-rich repeat flightless-interacting protein 1 isoform 2 [Mus
           musculus].
          Length = 628

 Score =  172 bits (437), Expect = 5e-43
 Identities = 106/195 (54%), Positives = 117/195 (60%), Gaps = 25/195 (12%)
 Frame = +1

Query: 247 RQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIK- 420
           R    VEER +KDF EKG                              +DTEASIREIK 
Sbjct: 195 RASPVVEERPDKDFAEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKE 254

Query: 421 -----------------------DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDV 531
                                  DSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+
Sbjct: 255 LNELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDM 314

Query: 532 LLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSE 711
           LLELEEQLAES+RQ EEK+KEFEREKHAHSILQFQFAEVKEAL+QREE+LE+   +   +
Sbjct: 315 LLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEEIRQLQQKQ 374

Query: 712 TATNGETSDPLSRVE 756
                E SD    +E
Sbjct: 375 AGFIREISDLQETIE 389


>ref|NP_001158310.1| leucine-rich repeat flightless-interacting protein 2 isoform 1 [Mus
           musculus].
          Length = 415

 Score =  170 bits (431), Expect = 2e-42
 Identities = 103/264 (39%), Positives = 147/264 (55%), Gaps = 17/264 (6%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKE- 261
           MGT GSGRKR P ++R +AED+AL+ I                      M+ELERQQ+E 
Sbjct: 1   MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQREG 60

Query: 262 --------------VEERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DT 396
                         ++E+S+K + +                               L D 
Sbjct: 61  VEDTLSLRSLGSHRLDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDP 120

Query: 397 EASIREIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQL 576
           + S+ E+++SL+E EEKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ 
Sbjct: 121 DTSLSELRESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYREN 180

Query: 577 EEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGET-SDPLSRV 753
           EEKSKE ER+KH  S+LQ +  E+KE L+QR+EL+EKHG+++  ++  NG+   +P+   
Sbjct: 181 EEKSKELERQKHMCSVLQHKMDELKEGLRQRDELIEKHGLVIIPDSTPNGDVHHEPVV-- 238

Query: 754 EHPGSTKMTKEEVGAPQAPGDGTL 825
                T +++E     ++ G+G L
Sbjct: 239 --GAITAVSQEAAQVLESAGEGPL 260


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.304    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,628,874
Number of extensions: 1292661
Number of successful extensions: 9437
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9119
Number of HSP's successfully gapped: 6
Length of query: 523
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 417
Effective length of database: 12,433,743
Effective search space: 5184870831
Effective search space used: 5184870831
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008395
         (1569 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001131025.1| leucine-rich repeat flightless-interacting p...   363   e-100
Alignment   gi|NP_004726.2| leucine-rich repeat flightless-interacting prot...   347   2e-95
Alignment   gi|NP_001131024.1| leucine-rich repeat flightless-interacting p...   333   2e-91
Alignment   gi|NP_001131023.1| leucine-rich repeat flightless-interacting p...   270   4e-72
Alignment   gi|NP_060194.1| leucine-rich repeat flightless-interacting prot...   181   1e-45
Alignment   gi|NP_001131022.1| leucine-rich repeat flightless-interacting p...   178   1e-44
Alignment   gi|NP_001127841.1| leucine-rich repeat flightless-interacting p...   171   1e-42
Alignment   gi|NP_006300.1| leucine-rich repeat flightless-interacting prot...   127   3e-29
Alignment   gi|NP_849188.4| retinitis pigmentosa 1-like 1 protein [Homo sap...    56   8e-08

>ref|NP_001131025.1| leucine-rich repeat flightless-interacting protein 1 isoform 5 [Homo
            sapiens].
          Length = 752

 Score =  363 bits (933), Expect = e-100
 Identities = 217/428 (50%), Positives = 255/428 (59%), Gaps = 27/428 (6%)
 Frame = +1

Query: 232  MKELERQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASI 408
            MKELERQQKEVEER EKDF EKG                              +DTEASI
Sbjct: 42   MKELERQQKEVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASI 101

Query: 409  REIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKS 588
            REIKDSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+LLELEEQLAESRRQ EEK+
Sbjct: 102  REIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKN 161

Query: 589  KEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGS 768
            KEFEREKHAHSILQFQFAEVKEALKQREE+LEKHGIILNSE ATNGETSD L+ V + G 
Sbjct: 162  KEFEREKHAHSILQFQFAEVKEALKQREEMLEKHGIILNSEIATNGETSDTLNNVGYQGP 221

Query: 769  TKMTKEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADP 948
            TKMTKEE+ A ++ GDGTLGRASEVEV NE+V  VGK EIL ++E+EQH E+ VKDC D 
Sbjct: 222  TKMTKEELNALKSTGDGTLGRASEVEVKNEIVANVGKREILHNTEKEQHTEDTVKDCVDI 281

Query: 949  EGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHTA 1128
            E  P GE  E   +S D+    G     T E+Q+QS I E     ENT QV+S E +   
Sbjct: 282  EVFPAGENTEDQKSSEDTAPFLGTLAGATYEEQVQSQILESSSLPENTVQVESNEVMGAP 341

Query: 1129 GDGPEASPGPSECSRQPD--------GEIPGPALEQDGGNAVE----------------- 1233
             D       PS C    D        GE     +E+  G                     
Sbjct: 342  DDRTRTPLEPSNCWSDLDGGNHTENVGEAAVTQVEEQAGTVASCPLGHSDDTVYHDDKCM 401

Query: 1234 -SKPQRKESAEKQEGLQTTVEERSPEPPQESAPVQIADVEVERQSGADAGVQSQRPAEAV 1410
               PQ  E++      +    + + EP +  A       +   + G + G++ ++P    
Sbjct: 402  VEVPQELETSTGHSLEKEFTNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPI--- 458

Query: 1411 PEAELPGA 1434
             + E+PG+
Sbjct: 459  -KTEVPGS 465


>ref|NP_004726.2| leucine-rich repeat flightless-interacting protein 1 isoform 4 [Homo
            sapiens].
          Length = 784

 Score =  347 bits (890), Expect = 2e-95
 Identities = 217/460 (47%), Positives = 255/460 (55%), Gaps = 59/460 (12%)
 Frame = +1

Query: 232  MKELERQQKE--------------------------------VEERSEKDF-EKGXXXXX 312
            MKELERQQKE                                VEER EKDF EKG     
Sbjct: 42   MKELERQQKEEDSERYSRRSRRNTSASDEDERMSVGSRGSLRVEERPEKDFTEKGSRNMP 101

Query: 313  XXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIKDSLAEAEEKYKKAMVSNAQLDNEK 492
                                     +DTEASIREIKDSLAE EEKYKKAMVSNAQLDNEK
Sbjct: 102  GLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEK 161

Query: 493  TNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQRE 672
            TNFMYQVDTLKD+LLELEEQLAESRRQ EEK+KEFEREKHAHSILQFQFAEVKEALKQRE
Sbjct: 162  TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 221

Query: 673  ELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTKEEVGAPQAPGDGTLGRASEVEVA 852
            E+LEKHGIILNSE ATNGETSD L+ V + G TKMTKEE+ A ++ GDGTLGRASEVEV 
Sbjct: 222  EMLEKHGIILNSEIATNGETSDTLNNVGYQGPTKMTKEELNALKSTGDGTLGRASEVEVK 281

Query: 853  NEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLPPGETAEAPTTSADSGLSSGIFVNP 1032
            NE+V  VGK EIL ++E+EQH E+ VKDC D E  P GE  E   +S D+    G     
Sbjct: 282  NEIVANVGKREILHNTEKEQHTEDTVKDCVDIEVFPAGENTEDQKSSEDTAPFLGTLAGA 341

Query: 1033 TNEDQIQSPIPEHPPCLENTQQVQSREALHTAGDGPEASPGPSECSRQPD--------GE 1188
            T E+Q+QS I E     ENT QV+S E +    D       PS C    D        GE
Sbjct: 342  TYEEQVQSQILESSSLPENTVQVESNEVMGAPDDRTRTPLEPSNCWSDLDGGNHTENVGE 401

Query: 1189 IPGPALEQDGGNAVE------------------SKPQRKESAEKQEGLQTTVEERSPEPP 1314
                 +E+  G                        PQ  E++      +    + + EP 
Sbjct: 402  AAVTQVEEQAGTVASCPLGHSDDTVYHDDKCMVEVPQELETSTGHSLEKEFTNQEAAEPK 461

Query: 1315 QESAPVQIADVEVERQSGADAGVQSQRPAEAVPEAELPGA 1434
            +  A       +   + G + G++ ++P     + E+PG+
Sbjct: 462  EVPAHSTEVGRDHNEEEGEETGLRDEKPI----KTEVPGS 497


>ref|NP_001131024.1| leucine-rich repeat flightless-interacting protein 1 isoform 3 [Homo
            sapiens].
          Length = 808

 Score =  333 bits (855), Expect = 2e-91
 Identities = 217/484 (44%), Positives = 255/484 (52%), Gaps = 83/484 (17%)
 Frame = +1

Query: 232  MKELERQQKE--------------------------------VEERSEKDF-EKGXXXXX 312
            MKELERQQKE                                VEER EKDF EKG     
Sbjct: 42   MKELERQQKEEDSERYSRRSRRNTSASDEDERMSVGSRGSLRVEERPEKDFTEKGSRNMP 101

Query: 313  XXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIK------------------------ 420
                                     +DTEASIREIK                        
Sbjct: 102  GLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKELNELKDQIQDVEGKYMQGLKEMK 161

Query: 421  DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFE 600
            DSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+LLELEEQLAESRRQ EEK+KEFE
Sbjct: 162  DSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFE 221

Query: 601  REKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMT 780
            REKHAHSILQFQFAEVKEALKQREE+LEKHGIILNSE ATNGETSD L+ V + G TKMT
Sbjct: 222  REKHAHSILQFQFAEVKEALKQREEMLEKHGIILNSEIATNGETSDTLNNVGYQGPTKMT 281

Query: 781  KEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQEQHKEEPVKDCADPEGLP 960
            KEE+ A ++ GDGTLGRASEVEV NE+V  VGK EIL ++E+EQH E+ VKDC D E  P
Sbjct: 282  KEELNALKSTGDGTLGRASEVEVKNEIVANVGKREILHNTEKEQHTEDTVKDCVDIEVFP 341

Query: 961  PGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSREALHTAGDGP 1140
             GE  E   +S D+    G     T E+Q+QS I E     ENT QV+S E +    D  
Sbjct: 342  AGENTEDQKSSEDTAPFLGTLAGATYEEQVQSQILESSSLPENTVQVESNEVMGAPDDRT 401

Query: 1141 EASPGPSECSRQPD--------GEIPGPALEQDGGNAVE------------------SKP 1242
                 PS C    D        GE     +E+  G                        P
Sbjct: 402  RTPLEPSNCWSDLDGGNHTENVGEAAVTQVEEQAGTVASCPLGHSDDTVYHDDKCMVEVP 461

Query: 1243 QRKESAEKQEGLQTTVEERSPEPPQESAPVQIADVEVERQSGADAGVQSQRPAEAVPEAE 1422
            Q  E++      +    + + EP +  A       +   + G + G++ ++P     + E
Sbjct: 462  QELETSTGHSLEKEFTNQEAAEPKEVPAHSTEVGRDHNEEEGEETGLRDEKPI----KTE 517

Query: 1423 LPGA 1434
            +PG+
Sbjct: 518  VPGS 521


>ref|NP_001131023.1| leucine-rich repeat flightless-interacting protein 1 isoform 2
           [Homo sapiens].
          Length = 394

 Score =  270 bits (689), Expect = 4e-72
 Identities = 147/199 (73%), Positives = 156/199 (78%), Gaps = 1/199 (0%)
 Frame = +1

Query: 232 MKELERQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASI 408
           MKELERQQKEVEER EKDF EKG                              +DTEASI
Sbjct: 42  MKELERQQKEVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASI 101

Query: 409 REIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKS 588
           REIKDSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+LLELEEQLAESRRQ EEK+
Sbjct: 102 REIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKN 161

Query: 589 KEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGS 768
           KEFEREKHAHSILQFQFAEVKEALKQREE+LEKHGIILNSE ATNGETSD L+ V + G 
Sbjct: 162 KEFEREKHAHSILQFQFAEVKEALKQREEMLEKHGIILNSEIATNGETSDTLNNVGYQGP 221

Query: 769 TKMTKEEVGAPQAPGDGTL 825
           TKMTKEE+ A ++ GDGTL
Sbjct: 222 TKMTKEELNALKSTGDGTL 240


>ref|NP_060194.1| leucine-rich repeat flightless-interacting protein 2 isoform 2
           [Homo sapiens].
          Length = 400

 Score =  181 bits (460), Expect = 1e-45
 Identities = 110/283 (38%), Positives = 163/283 (57%), Gaps = 7/283 (2%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKEV 264
           MGT  SGRKR P ++R +AED+AL+ I                      M+ELERQQKE+
Sbjct: 1   MGTPASGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQKEL 60

Query: 265 EERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-DTEASIREIKDSLAEAE 441
           +E+S+K + +                               L D + S+ E+++SL+E E
Sbjct: 61  DEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRESLSEVE 120

Query: 442 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREKHAHS 621
           EKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEKSKE ER+KH  S
Sbjct: 121 EKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCS 180

Query: 622 ILQFQFAEVKEALKQREELLEKHGIILNSETATNGETS-DPLSRVEHPGSTKMTKEEVGA 798
           +LQ +  E+KE L+QR+EL+EKHG+++  +   NG+ S +P++       T +++E    
Sbjct: 181 VLQHKMEELKEGLRQRDELIEKHGLVIIPDGTPNGDVSHEPVA----GAITVVSQEAAQV 236

Query: 799 PQAPGDGTLG-----RASEVEVANEMVERVGKSEILPDSEQEQ 912
            ++ G+G L       A E E   E++ ++ K ++  + E+++
Sbjct: 237 LESAGEGPLDVRLRKLAGEKE---ELLSQIRKLKLQLEEERQK 276


>ref|NP_001131022.1| leucine-rich repeat flightless-interacting protein 1 isoform 1
           [Homo sapiens].
          Length = 640

 Score =  178 bits (451), Expect = 1e-44
 Identities = 109/195 (55%), Positives = 119/195 (61%), Gaps = 25/195 (12%)
 Frame = +1

Query: 247 RQQKEVEERSEKDF-EKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDTEASIREIK- 420
           R    VEER EKDF EKG                              +DTEASIREIK 
Sbjct: 207 RASPVVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKE 266

Query: 421 -----------------------DSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDV 531
                                  DSLAE EEKYKKAMVSNAQLDNEKTNFMYQVDTLKD+
Sbjct: 267 LNELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDM 326

Query: 532 LLELEEQLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSE 711
           LLELEEQLAESRRQ EEK+KEFEREKHAHSILQFQFAEVKEALKQREE+LE+   +   +
Sbjct: 327 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEEIRQLQQKQ 386

Query: 712 TATNGETSDPLSRVE 756
            ++  E SD    +E
Sbjct: 387 ASSIREISDLQETIE 401



 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 40/68 (58%), Positives = 43/68 (63%)
 Frame = +1

Query: 79  MDMGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQK 258
           MDMGTQGSGRKRLPNRERLTAEDDALNQI                      MKELERQQK
Sbjct: 1   MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQK 60

Query: 259 EVEERSEK 282
           E+ +  +K
Sbjct: 61  EIYQVQKK 68


>ref|NP_001127841.1| leucine-rich repeat flightless-interacting protein 2 isoform 3
           [Homo sapiens].
          Length = 424

 Score =  171 bits (434), Expect = 1e-42
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 31/307 (10%)
 Frame = +1

Query: 85  MGTQGSGRKRLPNRERLTAEDDALNQIXXXXXXXXXXXXXXXXXXXXXXMKELERQQKEV 264
           MGT  SGRKR P ++R +AED+AL+ I                      M+ELERQQKE+
Sbjct: 1   MGTPASGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQKEL 60

Query: 265 EERSEKDFEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL---DTEAS---------- 405
           +E+S+K + +                               L   DT  S          
Sbjct: 61  DEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRDIYDLKD 120

Query: 406 ------------IREIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEE 549
                       ++E+K+SL+E EEKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EE
Sbjct: 121 QIQDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEE 180

Query: 550 QLAESRRQLEEKSKEFEREKHAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGE 729
           Q+AE  R+ EEKSKE ER+KH  S+LQ +  E+KE L+QR+EL+EKHG+++  +   NG+
Sbjct: 181 QMAEFYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEKHGLVIIPDGTPNGD 240

Query: 730 TS-DPLSRVEHPGSTKMTKEEVGAPQAPGDGTLG-----RASEVEVANEMVERVGKSEIL 891
            S +P++       T +++E     ++ G+G L       A E E   E++ ++ K ++ 
Sbjct: 241 VSHEPVA----GAITVVSQEAAQVLESAGEGPLDVRLRKLAGEKE---ELLSQIRKLKLQ 293

Query: 892 PDSEQEQ 912
            + E+++
Sbjct: 294 LEEERQK 300


>ref|NP_006300.1| leucine-rich repeat flightless-interacting protein 2 isoform 1
           [Homo sapiens].
          Length = 721

 Score =  127 bits (319), Expect = 3e-29
 Identities = 62/94 (65%), Positives = 79/94 (84%)
 Frame = +1

Query: 406 IREIKDSLAEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEK 585
           ++E+K+SL+E EEKYKKAMVSNAQLDNEK N +YQVDTLKDV+ E EEQ+AE  R+ EEK
Sbjct: 365 LKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEK 424

Query: 586 SKEFEREKHAHSILQFQFAEVKEALKQREELLEK 687
           SKE ER+KH  S+LQ +  E+KE L+QR+EL+E+
Sbjct: 425 SKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 458


>ref|NP_849188.4| retinitis pigmentosa 1-like 1 protein [Homo sapiens].
          Length = 2400

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 84/362 (23%), Positives = 135/362 (37%), Gaps = 21/362 (5%)
 Frame = +1

Query: 430  AEAEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDVLLELEEQLAESRRQLEEKSKEFEREK 609
            AEA E  K+A      ++  +T    + ++      E EE   E+  Q + +S+  E + 
Sbjct: 1906 AEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQ- 1964

Query: 610  HAHSILQFQFAEVKEALKQREELLEKHGIILNSETATNGETSDPLSRVEHPGSTKMTKEE 789
                       E +E  +   E +E   + + ++ A  GE       VE P +    +E 
Sbjct: 1965 -----------EAEEEAQPESEDVEALEVEVETQEA-EGEAQPESEDVEAPEAEGEMQEA 2012

Query: 790  VGAPQAPGDGTLGRA-SEVEVANEMVERVGKSE----------ILPDSEQEQHKEEPVKD 936
                Q   DG   +  SE E A E+     K+E            P++E+E  + E    
Sbjct: 2013 EEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQ 2072

Query: 937  CADPEGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLENTQQVQSR-- 1110
             A+ E  P  E  +A     ++   S     P  E + Q       P  E   Q +S   
Sbjct: 2073 EAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGI 2132

Query: 1111 EALHTAGDGPEASPG----PSECSRQPDGE-IPGPALEQDGG---NAVESKPQRKESAEK 1266
            EA    G+    S G     +E   QP+ E I     E++       VE+     E+  +
Sbjct: 2133 EAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPE 2192

Query: 1267 QEGLQTTVEERSPEPPQESAPVQIADVEVERQSGADAGVQSQRPAEAVPEAELPGAGEQV 1446
             EG++    E   +P  E   V+  + E E Q   +     +   EA PE+E    GE+ 
Sbjct: 2193 SEGIEAPEAEGEAQPELEG--VEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKK 2250

Query: 1447 GS 1452
            GS
Sbjct: 2251 GS 2252



 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 81/306 (26%), Positives = 117/306 (38%), Gaps = 22/306 (7%)
 Frame = +1

Query: 598  EREKHAHSILQFQFAEVKEALKQREELLEK---------HGIILNSETATNGET----SD 738
            ERE   H+      +E+ EA ++ E + E+         H   L  E A  G+     SD
Sbjct: 1771 EREGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSD 1830

Query: 739  PLSRVEHP---GSTKMTKEEVGAPQAPGDGTLGRASEVEVANEMVERVGKSEILPDSEQE 909
                +E P   G  +   E V AP+A GD     A E E            E  P+SE  
Sbjct: 1831 GAEGIEAPEAEGEAQPESEGVEAPEAEGD-----AQEAE-----------GEAQPESEDV 1874

Query: 910  QHKEEPVKDCADPEGLPPGETAEAPTTSADSGLSSGIFVNPTNEDQIQSPIPEHPPCLEN 1089
            +  E      A+ E  P  E  E P    +        V P +E   ++P  E     E 
Sbjct: 1875 EAPE------AEGEAQPESEDVETPEAEWE--------VQPESEG-AEAPEAEK----EA 1915

Query: 1090 TQQVQSREALHTAG-DGPEASPGPSECSRQPDGEIPGPALEQDGGNAVESKPQRKES--- 1257
              + +S EAL T G D PE+    ++ + +   E  G    Q     +ES+   +E+   
Sbjct: 1916 QPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQT--QPESEVIESQEAEEEAQPE 1973

Query: 1258 AEKQEGLQTTVE--ERSPEPPQESAPVQIADVEVERQSGADAGVQSQRPAEAVPEAELPG 1431
            +E  E L+  VE  E   E   ES  V+  + E E Q   +         EA P++E   
Sbjct: 1974 SEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEE 2033

Query: 1432 AGEQVG 1449
            A E  G
Sbjct: 2034 AQEVEG 2039


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.304    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,071,207
Number of extensions: 1583827
Number of successful extensions: 12123
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 11723
Number of HSP's successfully gapped: 12
Length of query: 523
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 416
Effective length of database: 14,770,016
Effective search space: 6144326656
Effective search space used: 6144326656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008395
         (1569 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1332   0.0  
gb|GL893320.2| Sus scrofa unplaced genomic scaffold ChrUScaf1205      908   0.0  

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1332 bits (672), Expect = 0.0
 Identities = 728/740 (98%), Gaps = 5/740 (0%)
 Strand = Plus / Plus

                                                                             
Query: 824       taggaagagccagtgaagtggaggtggcaaatgagatggtggagcgtgtggggaaaagcg 883
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832486 taggaagagccagtgaagtggaggtggcaaatgagatggtggagcgtgtggggaaaagcg 151832545

                                                                             
Query: 884       agatcttgccggattctgagcaagaacagcacaaagaggagccagtaaaggactgtgcgg 943
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832546 agatcttgccggattctgagcaagaacagcacaaagaggagccagtaaaggactgtgcgg 151832605

                                                                             
Query: 944       acccagaggggttacctcccggtgaaactgccgaggccccgaccacctctgcagacagtg 1003
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832606 acccagaggggttacctcccggtgaaactgccgaggccccgaccacctctgcagacagtg 151832665

                                                                             
Query: 1004      gcctctcctccggaatattcgtaaatcccacgaatgaggaccagattcaaagcccgattc 1063
                 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 151832666 gcctctcctccggaatattcgtaaatcccacgaatgaggaccaggttcaaagcccgattc 151832725

                                                                             
Query: 1064      cagagcaccctccctgcctcgaaaacacacagcaggtgcagtccagggaggccctacaca 1123
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832726 cagagcaccctccctgcctcgaaaacacacagcaggtgcagtccagggaggccctacaca 151832785

                                                                             
Query: 1124      cggcaggtgatgggcctgaggcttccccggggccgtcggaatgttcccgccaaccagacg 1183
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832786 cggcaggtgatgggcctgaggcttccccggggccgtcggaatgttcccgccaaccagacg 151832845

                                                                             
Query: 1184      gcgaaatcccaggtcctgcgcttgagcaggacggtggtaacgccgtggagagcaaacccc 1243
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832846 gcgaaatcccaggtcctgcgcttgagcaggacggtggtaacgccgtggagagcaaacccc 151832905

                                                                             
Query: 1244      aaagaaaagagtctgcagagaagcaggaaggtcttcaaaccaccgtggaagagaggagcc 1303
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151832906 aaagaaaagagtctgcagagaagcaggaaggtcttcaaaccaccgtggaagagaggagcc 151832965

                                                                             
Query: 1304      cagaaccgcctcaggaatctgctcctgtgcaaatagccgacgtggaagtcgaaaggcaga 1363
                 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 151832966 cagaaccgcctcaggaatctgctcctgtgcaaatagctgacgtggaagtcgaaaggcaga 151833025

                                                                             
Query: 1364      gcggtgcagacgcaggggtacaaagtcagagacccgccgaggcggtgccggaagcagagc 1423
                 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 151833026 gcggtgcagacgcaggggtacaaagtcagagacccgccgaggcggtgccagaggcagagc 151833085

                                                                             
Query: 1424      tccctggggccggggagcaggtgggctcgggagcctcgagtcct-ccaggtgcagcgatg 1482
                 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 151833086 tccctggggccggggagcaggtgggctcgggagcctcgagtcctcccaggtgcagcgatg 151833145

                                                                             
Query: 1483      acccccgtgagcca-caggaaacgggggtggcggatgcccca-gaggctcgga-ccaggc 1539
                 | |||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 151833146 a-ccccgtgagccaccaggaaacgggggtggcggatgctccaggaggctcggacccaggc 151833204

                                     
Query: 1540      ccagagtgtgatttagagaa 1559
                  ||| |||||||||||||||
Sbjct: 151833205 acagggtgtgatttagagaa 151833224



 Score =  345 bits (174), Expect = 5e-92
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                             
Query: 419       aggactccctggcggaagcggaggagaagtacaagaaggccatggtctccaacgcgcagc 478
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151822419 aggactccctggcggaagcggaggagaagtacaagaaggccatggtctccaacgcgcagc 151822478

                                                                             
Query: 479       tggacaacgagaagaccaacttcatgtaccaggtggacacgctgaaggacgtgctgctgg 538
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151822479 tggacaacgagaagaccaacttcatgtaccaggtggacacgctgaaggacgtgctgctgg 151822538

                                                                       
Query: 539       agctggaggagcagctggccgagtcccggcggcagctcgaggagaagagcaagg 592
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151822539 agctggaggagcagctggccgagtcccggcggcagctcgaggagaagagcaagg 151822592



 Score =  287 bits (145), Expect = 9e-75
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                             
Query: 683       agaaacacgggataatactcaattcagaaacagccaccaatggcgagacctcagaccctc 742
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151829488 agaaacacgggataatactcaattcagaaacagccaccaatggcgagacctcagaccctc 151829547

                                                                             
Query: 743       tcagccgtgtggaacacccagggtctacgaagatgacgaaggaggaggtcggcgctcccc 802
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151829548 tcagccgtgtggaacacccagggtctacgaagatgacgaaggaggaggtcggcgctcccc 151829607

                                          
Query: 803       aggcccccggggacgggacgctagg 827
                 |||||||||||||||||||||||||
Sbjct: 151829608 aggcccccggggacgggacgctagg 151829632



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                             
Query: 293       agggctcccgtagcctgcccagcctgtcggcagccaccctggcctccctcgggggcacct 352
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151818120 agggctcccgtagcctgcccagcctgtcggcagccaccctggcctccctcgggggcacct 151818179

                                                                             
Query: 353       cctctcgcagaggcagcggggacacctccatctcccttgacaccgaggcgtccatcaggg 412
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151818180 cctctcgcagaggcagcggggacacctccatctcccttgacaccgaggcgtccatcaggg 151818239

                          
Query: 413       aaatcaagg 421
                 |||||||||
Sbjct: 151818240 aaatcaagg 151818248



 Score =  188 bits (95), Expect = 6e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                             
Query: 590       aggagtttgaaagggagaagcacgcccacagcatcctacagtttcagtttgctgaagtca 649
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151825821 aggagtttgaaagggagaagcacgcccacagcatcctacagtttcagtttgctgaagtca 151825880

                                                    
Query: 650       aagaggccctgaagcaaagggaagagctgcttgag 684
                 |||||||||||||||||||||||||||||||||||
Sbjct: 151825881 aagaggccctgaagcaaagggaagagctgcttgag 151825915



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                              
Query: 219       ccgggagatcaggatgaaggagctggagcggcagcagaaggaggt 263
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151774483 ccgggagatcaggatgaaggagctggagcggcagcagaaggaggt 151774527



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                     
Query: 260       aggttgaagagagatcagaaaaggactttgagaagg 295
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 151817441 aggttgaagagagatcagaaaaggactttgagaagg 151817476


>gb|GL893320.2| Sus scrofa unplaced genomic scaffold ChrUScaf1205
          Length = 124836

 Score =  908 bits (458), Expect = 0.0
 Identities = 461/462 (99%)
 Strand = Plus / Minus

                                                                         
Query: 824   taggaagagccagtgaagtggaggtggcaaatgagatggtggagcgtgtggggaaaagcg 883
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71542 taggaagagccagtgaagtggaggtggcaaatgagatggtggagcgtgtggggaaaagcg 71483

                                                                         
Query: 884   agatcttgccggattctgagcaagaacagcacaaagaggagccagtaaaggactgtgcgg 943
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71482 agatcttgccggattctgagcaagaacagcacaaagaggagccagtaaaggactgtgcgg 71423

                                                                         
Query: 944   acccagaggggttacctcccggtgaaactgccgaggccccgaccacctctgcagacagtg 1003
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71422 acccagaggggttacctcccggtgaaactgccgaggccccgaccacctctgcagacagtg 71363

                                                                         
Query: 1004  gcctctcctccggaatattcgtaaatcccacgaatgaggaccagattcaaagcccgattc 1063
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 71362 gcctctcctccggaatattcgtaaatcccacgaatgaggaccaggttcaaagcccgattc 71303

                                                                         
Query: 1064  cagagcaccctccctgcctcgaaaacacacagcaggtgcagtccagggaggccctacaca 1123
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71302 cagagcaccctccctgcctcgaaaacacacagcaggtgcagtccagggaggccctacaca 71243

                                                                         
Query: 1124  cggcaggtgatgggcctgaggcttccccggggccgtcggaatgttcccgccaaccagacg 1183
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71242 cggcaggtgatgggcctgaggcttccccggggccgtcggaatgttcccgccaaccagacg 71183

                                                                         
Query: 1184  gcgaaatcccaggtcctgcgcttgagcaggacggtggtaacgccgtggagagcaaacccc 1243
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71182 gcgaaatcccaggtcctgcgcttgagcaggacggtggtaacgccgtggagagcaaacccc 71123

                                                       
Query: 1244  aaagaaaagagtctgcagagaagcaggaaggtcttcaaacca 1285
             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71122 aaagaaaagagtctgcagagaagcaggaaggtcttcaaacca 71081



 Score =  345 bits (174), Expect = 5e-92
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                         
Query: 419   aggactccctggcggaagcggaggagaagtacaagaaggccatggtctccaacgcgcagc 478
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81028 aggactccctggcggaagcggaggagaagtacaagaaggccatggtctccaacgcgcagc 80969

                                                                         
Query: 479   tggacaacgagaagaccaacttcatgtaccaggtggacacgctgaaggacgtgctgctgg 538
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80968 tggacaacgagaagaccaacttcatgtaccaggtggacacgctgaaggacgtgctgctgg 80909

                                                                   
Query: 539   agctggaggagcagctggccgagtcccggcggcagctcgaggagaagagcaagg 592
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80908 agctggaggagcagctggccgagtcccggcggcagctcgaggagaagagcaagg 80855



 Score =  287 bits (145), Expect = 9e-75
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                         
Query: 683   agaaacacgggataatactcaattcagaaacagccaccaatggcgagacctcagaccctc 742
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74690 agaaacacgggataatactcaattcagaaacagccaccaatggcgagacctcagaccctc 74631

                                                                         
Query: 743   tcagccgtgtggaacacccagggtctacgaagatgacgaaggaggaggtcggcgctcccc 802
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74630 tcagccgtgtggaacacccagggtctacgaagatgacgaaggaggaggtcggcgctcccc 74571

                                      
Query: 803   aggcccccggggacgggacgctagg 827
             |||||||||||||||||||||||||
Sbjct: 74570 aggcccccggggacgggacgctagg 74546



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                         
Query: 293   agggctcccgtagcctgcccagcctgtcggcagccaccctggcctccctcgggggcacct 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85440 agggctcccgtagcctgcccagcctgtcggcagccaccctggcctccctcgggggcacct 85381

                                                                         
Query: 353   cctctcgcagaggcagcggggacacctccatctcccttgacaccgaggcgtccatcaggg 412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85380 cctctcgcagaggcagcggggacacctccatctcccttgacaccgaggcgtccatcaggg 85321

                      
Query: 413   aaatcaagg 421
             |||||||||
Sbjct: 85320 aaatcaagg 85312



 Score =  127 bits (64), Expect = 2e-26
 Identities = 70/72 (97%)
 Strand = Plus / Minus

                                                                         
Query: 1393  agacccgccgaggcggtgccggaagcagagctccctggggccggggagcaggtgggctcg 1452
             |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 70980 agacccgccgaggcggtgccagaggcagagctccctggggccggggagcaggtgggctcg 70921

                         
Query: 1453  ggagcctcgagt 1464
             ||||||||||||
Sbjct: 70920 ggagcctcgagt 70909



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                 
Query: 260   aggttgaagagagatcagaaaaggactttgagaagg 295
             ||||||||||||||||||||||||||||||||||||
Sbjct: 86119 aggttgaagagagatcagaaaaggactttgagaagg 86084


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,027,936
Number of extensions: 299
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 13
Length of query: 1569
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1548
Effective length of database: 2,808,413,156
Effective search space: 4347423565488
Effective search space used: 4347423565488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)