Animal-Genome cDNA 20110601C-008399


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008399
         (1482 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777062.2| beta-catenin-like protein 1 [Bos taurus].            815   0.0  

>ref|NP_777062.2| beta-catenin-like protein 1 [Bos taurus].
          Length = 563

 Score =  815 bits (2106), Expect = 0.0
 Identities = 423/463 (91%), Positives = 426/463 (92%)
 Frame = +1

Query: 94   MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
            MDVGELLSYQPNRGTKRPRDDEEEELKM                           KKRLL
Sbjct: 1    MDVGELLSYQPNRGTKRPRDDEEEELKMRRRQAGTRERGRYREEEMTVVEEADDDKKRLL 60

Query: 274  QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
            QIIDR+G        PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61   QIIDREGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120

Query: 454  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
            IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180

Query: 634  AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
            AEVL DALVDGQVVALLVQ+LERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG
Sbjct: 181  AEVLTDALVDGQVVALLVQDLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 240

Query: 814  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
            LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300

Query: 994  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
            PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA
Sbjct: 301  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 360

Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
            MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361  MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420

Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
            QQRTRLLNKFTENDSEKVDRLMELHFKYLDA+QVA KKIEGEK
Sbjct: 421  QQRTRLLNKFTENDSEKVDRLMELHFKYLDAVQVADKKIEGEK 463


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,398,688
Number of extensions: 1519314
Number of successful extensions: 5124
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5116
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 388
Effective length of database: 14,174,046
Effective search space: 5499529848
Effective search space used: 5499529848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008399
         (1482 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534415.2| PREDICTED: similar to beta catenin-like 1 isofo...   821   0.0  
Alignment   gi|XP_865914.1| PREDICTED: similar to beta catenin-like 1 isofo...   416   e-116

>ref|XP_534415.2| PREDICTED: similar to beta catenin-like 1 isoform 1 [Canis
            familiaris].
          Length = 563

 Score =  821 bits (2120), Expect = 0.0
 Identities = 426/463 (92%), Positives = 427/463 (92%)
 Frame = +1

Query: 94   MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
            MDVGELLSYQPNRGTKRPRDDEEEELKM                           KKRLL
Sbjct: 1    MDVGELLSYQPNRGTKRPRDDEEEELKMRRRQAGPRDRGRYREEEMTVVEEADDDKKRLL 60

Query: 274  QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
            QIIDR+G        PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61   QIIDREGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120

Query: 454  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
            IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180

Query: 634  AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
            AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG
Sbjct: 181  AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 240

Query: 814  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
            LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300

Query: 994  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
            PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA
Sbjct: 301  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 360

Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
            MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361  MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420

Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
            QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVA KKIEGEK
Sbjct: 421  QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVADKKIEGEK 463


>ref|XP_865914.1| PREDICTED: similar to beta catenin-like 1 isoform 2 [Canis
            familiaris].
          Length = 311

 Score =  416 bits (1070), Expect = e-116
 Identities = 210/211 (99%), Positives = 210/211 (99%)
 Frame = +1

Query: 850  MPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMEN 1029
            MPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMEN
Sbjct: 1    MPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMEN 60

Query: 1030 LFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHK 1209
            LFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHK
Sbjct: 61   LFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHK 120

Query: 1210 FVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTE 1389
            FVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTE
Sbjct: 121  FVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTE 180

Query: 1390 NDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
            NDSEKVDRLMELHFKYLDAMQVA KKIEGEK
Sbjct: 181  NDSEKVDRLMELHFKYLDAMQVADKKIEGEK 211


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,659,337
Number of extensions: 1546871
Number of successful extensions: 5036
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5030
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 387
Effective length of database: 15,307,552
Effective search space: 5924022624
Effective search space used: 5924022624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008399
         (1482 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003360036.1| PREDICTED: hypothetical protein LOC100621663...   430   e-120
Alignment   gi|XP_003134482.2| PREDICTED: beta-catenin-like protein 1-like ...   308   5e-84
Alignment   gi|XP_003360035.1| PREDICTED: hypothetical protein LOC100515108...   215   4e-56
Alignment   gi|XP_001925523.1| PREDICTED: beta-catenin-like protein 1-like ...   116   3e-26

>ref|XP_003360036.1| PREDICTED: hypothetical protein LOC100621663 [Sus scrofa].
          Length = 565

 Score =  430 bits (1105), Expect = e-120
 Identities = 219/234 (93%), Positives = 221/234 (94%)
 Frame = +1

Query: 604  IDTLHESEEGAEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRP 783
            + T      G+ V     VDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRP
Sbjct: 269  LHTFELKGRGSSVRTQVWVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRP 328

Query: 784  EMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLL 963
            EMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLL
Sbjct: 329  EMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLL 388

Query: 964  QQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR 1143
            QQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR
Sbjct: 389  QQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISR 448

Query: 1144 SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHE 1305
            SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHE
Sbjct: 449  SSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHE 502


>ref|XP_003134482.2| PREDICTED: beta-catenin-like protein 1-like [Sus scrofa].
          Length = 256

 Score =  308 bits (789), Expect = 5e-84
 Identities = 156/157 (99%), Positives = 157/157 (100%)
 Frame = +1

Query: 655  LVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLK 834
            +VDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLK
Sbjct: 24   IVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLK 83

Query: 835  RLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQ 1014
            RLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQ
Sbjct: 84   RLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQ 143

Query: 1015 EMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLR 1125
            EMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLR
Sbjct: 144  EMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLR 180


>ref|XP_003360035.1| PREDICTED: hypothetical protein LOC100515108 [Sus scrofa].
          Length = 366

 Score =  215 bits (548), Expect = 4e-56
 Identities = 121/179 (67%), Positives = 124/179 (69%), Gaps = 46/179 (25%)
 Frame = +1

Query: 259 KKRLLQIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESEL 438
           KKRLLQIIDRDG        PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESEL
Sbjct: 29  KKRLLQIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESEL 88

Query: 439 DLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDV------------------ 564
           DLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTD+                  
Sbjct: 89  DLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDILSALSSAGAQPSAGCGVE 148

Query: 565 ----------------------------SIAVVDLLQELTDIDTLHESEEGAEVLIDAL 657
                                        ++VVDLLQELTDIDTLHESEEGAEVLIDAL
Sbjct: 149 FWSVKSTSGDSVVHTSHLISEIITIFEGELSVVDLLQELTDIDTLHESEEGAEVLIDAL 207


>ref|XP_001925523.1| PREDICTED: beta-catenin-like protein 1-like [Sus scrofa].
          Length = 174

 Score =  116 bits (291), Expect = 3e-26
 Identities = 58/59 (98%), Positives = 58/59 (98%)
 Frame = +1

Query: 1306 EHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
            EHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVA KKIEGEK
Sbjct: 16   EHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVADKKIEGEK 74


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,798,949
Number of extensions: 998320
Number of successful extensions: 3379
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3377
Number of HSP's successfully gapped: 5
Length of query: 494
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 391
Effective length of database: 8,779,541
Effective search space: 3432800531
Effective search space used: 3432800531
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008399
         (1482 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079956.3| beta-catenin-like protein 1 [Mus musculus].          811   0.0  

>ref|NP_079956.3| beta-catenin-like protein 1 [Mus musculus].
          Length = 563

 Score =  811 bits (2096), Expect = 0.0
 Identities = 420/463 (90%), Positives = 424/463 (91%)
 Frame = +1

Query: 94   MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
            MDVGELLSYQPNRGTKRPRDDEEEELK                            KKRLL
Sbjct: 1    MDVGELLSYQPNRGTKRPRDDEEEELKTRRKQTGPRERGRYREEEATAAEDTADDKKRLL 60

Query: 274  QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
            QIIDRDG        PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61   QIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120

Query: 454  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
            IQEMHVVATMPDLYHLLVEL+AVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121  IQEMHVVATMPDLYHLLVELSAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180

Query: 634  AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
            AEVLIDALVDGQV ALLVQNLERLDESV+EEADGVHNTLAIVENMAEFRPEMCTEAAQQG
Sbjct: 181  AEVLIDALVDGQVAALLVQNLERLDESVREEADGVHNTLAIVENMAEFRPEMCTEAAQQG 240

Query: 814  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
            LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300

Query: 994  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
            PSTAEEQEMMENLFD+LCSCLMLSSNRERFLKGEGLQLMNLMLREKK+SRSSALKVLDHA
Sbjct: 301  PSTAEEQEMMENLFDALCSCLMLSSNRERFLKGEGLQLMNLMLREKKVSRSSALKVLDHA 360

Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
            MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361  MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420

Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
            QQRTRLLNKFTENDSEKVDRLMELHFKYL AMQVA KKIEGEK
Sbjct: 421  QQRTRLLNKFTENDSEKVDRLMELHFKYLSAMQVADKKIEGEK 463


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,234,438
Number of extensions: 1291747
Number of successful extensions: 4337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 389
Effective length of database: 12,463,779
Effective search space: 4848410031
Effective search space used: 4848410031
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008399
         (1482 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_110517.2| beta-catenin-like protein 1 [Homo sapiens].          816   0.0  

>ref|NP_110517.2| beta-catenin-like protein 1 [Homo sapiens].
          Length = 563

 Score =  816 bits (2107), Expect = 0.0
 Identities = 424/463 (91%), Positives = 424/463 (91%)
 Frame = +1

Query: 94   MDVGELLSYQPNRGTKRPRDDEEEELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRLL 273
            MDVGELLSYQPNRGTKRPRDDEEEE KM                           KKRLL
Sbjct: 1    MDVGELLSYQPNRGTKRPRDDEEEEQKMRRKQTGTRERGRYREEEMTVVEEADDDKKRLL 60

Query: 274  QIIDRDGXXXXXXXXPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 453
            QIIDRDG        PLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI
Sbjct: 61   QIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDI 120

Query: 454  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 633
            IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG
Sbjct: 121  IQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEG 180

Query: 634  AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEAAQQG 813
            AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTE AQQG
Sbjct: 181  AEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEGAQQG 240

Query: 814  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 993
            LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN
Sbjct: 241  LLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHN 300

Query: 994  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 1173
            PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA
Sbjct: 301  PSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHA 360

Query: 1174 MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 1353
            MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG
Sbjct: 361  MIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRG 420

Query: 1354 QQRTRLLNKFTENDSEKVDRLMELHFKYLDAMQVAHKKIEGEK 1482
            QQRTRLLNKFTENDSEKVDRLMELHFKYL AMQVA KKIEGEK
Sbjct: 421  QQRTRLLNKFTENDSEKVDRLMELHFKYLGAMQVADKKIEGEK 463


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,760,421
Number of extensions: 1534425
Number of successful extensions: 5188
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5170
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 387
Effective length of database: 14,770,016
Effective search space: 5715996192
Effective search space used: 5715996192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008399
         (1482 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                         367   1e-98

>Sscrofa_Chr17 
||          Length = 69701581

 Score =  367 bits (185), Expect = 1e-98
 Identities = 185/185 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1122     cagagaaaagaagatttcccggagcagtgccctgaaggtgctggaccatgccatgattgg 1181
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46357389 cagagaaaagaagatttcccggagcagtgccctgaaggtgctggaccatgccatgattgg 46357330

                                                                            
Query: 1182     acctgagggcacggacaactgccataagtttgttgacattcttggcttaagaaccatctt 1241
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46357329 acctgagggcacggacaactgccataagtttgttgacattcttggcttaagaaccatctt 46357270

                                                                            
Query: 1242     tcccctttttatgaagtctcccaggaagatcaagaaagtgggaaccactgagaaggagca 1301
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46357269 tcccctttttatgaagtctcccaggaagatcaagaaagtgggaaccactgagaaggagca 46357210

                     
Query: 1302     tgaag 1306
                |||||
Sbjct: 46357209 tgaag 46357205



 Score =  295 bits (149), Expect = 4e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 976      gtgtttaaaagacacaatcctagcacagctgaggagcaggagatgatggagaatctgttt 1035
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46391555 gtgtttaaaagacacaatcctagcacagctgaggagcaggagatgatggagaatctgttt 46391496

                                                                            
Query: 1036     gattcactctgttcctgcctaatgctcagttccaatcgtgagcgcttcctgaagggcgag 1095
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46391495 gattcactctgttcctgcctaatgctcagttccaatcgtgagcgcttcctgaagggcgag 46391436

                                             
Query: 1096     ggtcttcagctgatgaatctcatgctcag 1124
                |||||||||||||||||||||||||||||
Sbjct: 46391435 ggtcttcagctgatgaatctcatgctcag 46391407



 Score =  202 bits (102), Expect = 4e-49
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1305     agagcatgtctgttcgatcctggcttccctcctgcggaacctgagagggcagcagcgaac 1364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46278677 agagcatgtctgttcgatcctggcttccctcctgcggaacctgagagggcagcagcgaac 46278736

                                                          
Query: 1365     ccggcttctgaataaattcacagaaaatgacagcgagaaggt 1406
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46278737 ccggcttctgaataaattcacagaaaatgacagcgagaaggt 46278778



 Score =  188 bits (95), Expect = 6e-45
 Identities = 95/95 (100%)
 Strand = Plus / Minus

                                                                            
Query: 657      ggtggacgggcaagtggttgcgctgctcgtgcagaatctcgagcgcctggatgagtctgt 716
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46401853 ggtggacgggcaagtggttgcgctgctcgtgcagaatctcgagcgcctggatgagtctgt 46401794

                                                   
Query: 717      gaaagaagaggcagatggcgtccacaacactctgg 751
                |||||||||||||||||||||||||||||||||||
Sbjct: 46401793 gaaagaagaggcagatggcgtccacaacactctgg 46401759



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                            
Query: 751      gctattgtggagaacatggcagagttccggccagagatgtgtacggaggccgcccagcag 810
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46398812 gctattgtggagaacatggcagagttccggccagagatgtgtacggaggccgcccagcag 46398753

                                                  
Query: 811      ggtcttctgcagtggctgctgaagcggctgaagg 844
                ||||||||||||||||||||||||||||||||||
Sbjct: 46398752 ggtcttctgcagtggctgctgaagcggctgaagg 46398719



 Score =  151 bits (76), Expect = 1e-33
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1403     aggttgacaggctgatggaactgcattttaaatatctggatgcaatgcaggtggcccaca 1462
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 46280232 aggttgacaggctgatggaactgcattttaaatatctggatgcaatgcaggtggccgaca 46280291

                                    
Query: 1463     agaagattgaaggggaaaaa 1482
                ||||||||||||||||||||
Sbjct: 46280292 agaagattgaaggggaaaaa 46280311



 Score =  149 bits (75), Expect = 5e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                            
Query: 842      aggcaaagatgcctttcgatgccaacaaactgtattgcagtgaagtgctggccatattgc 901
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46393387 aggcaaagatgcctttcgatgccaacaaactgtattgcagtgaagtgctggccatattgc 46393328

                               
Query: 902      tccaggacaatgatg 916
                |||||||||||||||
Sbjct: 46393327 tccaggacaatgatg 46393313



 Score =  125 bits (63), Expect = 7e-26
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                            
Query: 916      gaaaacagggaattgcttggggagctggatggaattgatgtgcttcttcagcagttatcc 975
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46393075 gaaaacagggaattgcttggggagctggatggaattgatgtgcttcttcagcagttatcc 46393016

                   
Query: 976      gtg 978
                |||
Sbjct: 46393015 gtg 46393013


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,087,382
Number of extensions: 250
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 8
Length of query: 1482
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1461
Effective length of database: 2,808,413,156
Effective search space: 4103091620916
Effective search space used: 4103091620916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)