Animal-Genome cDNA 20110601C-008405


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008405
         (998 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069680.1| peroxisomal biogenesis factor 13 [Bos taurus].    474   e-134

>ref|NP_001069680.1| peroxisomal biogenesis factor 13 [Bos taurus].
          Length = 403

 Score =  474 bits (1220), Expect = e-134
 Identities = 247/318 (77%), Positives = 255/318 (80%)
 Frame = +1

Query: 40  MASQXXXXXXXWETRRIXXXXXXXXXXXTFQSADLGPTILTRPGQPTLSRVPPPILPRPS 219
           MASQ       WETRRI           TFQSA+LGPT+LTRPGQPTL+RVPPPILPRPS
Sbjct: 1   MASQPPPPPKPWETRRIPGTGPGPGPGPTFQSAELGPTLLTRPGQPTLTRVPPPILPRPS 60

Query: 220 QQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRFVQ 399
           QQTGS N+NTFRP                                 RLRIDDLPPSRFVQ
Sbjct: 61  QQTGSGNLNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGYNRLRIDDLPPSRFVQ 120

Query: 400 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 579
           QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
Sbjct: 121 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 180

Query: 580 AFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFLFF 759
           AFALVRTIRYLYRRLQWM+GLRRG ENEDLWAESE TVACLGAEDRAANSAKSWPIFLFF
Sbjct: 181 AFALVRTIRYLYRRLQWMIGLRRGLENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFF 240

Query: 760 AVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDMLN 939
           AVILGGPYLIWKLLST+SDEVTDSTNWASGEDDHVVARAEYDFVAVSEE+ISFRAGDMLN
Sbjct: 241 AVILGGPYLIWKLLSTHSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEEISFRAGDMLN 300

Query: 940 LALKDSNPECVAGFWASL 993
           LALK+  P       ASL
Sbjct: 301 LALKEQQPRVRGWLLASL 318


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,249,985
Number of extensions: 841899
Number of successful extensions: 3559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3535
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008405
         (998 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531837.1| PREDICTED: similar to Peroxisomal membrane prot...   475   e-134

>ref|XP_531837.1| PREDICTED: similar to Peroxisomal membrane protein PEX13
           (Peroxin-13) [Canis familiaris].
          Length = 403

 Score =  475 bits (1223), Expect = e-134
 Identities = 246/318 (77%), Positives = 257/318 (80%)
 Frame = +1

Query: 40  MASQXXXXXXXWETRRIXXXXXXXXXXXTFQSADLGPTILTRPGQPTLSRVPPPILPRPS 219
           MASQ       WETRRI           +FQSADLGPT+LTRPGQPTL+RVPPPILPRPS
Sbjct: 1   MASQPPPPPKPWETRRIPGVGPGPGPGPSFQSADLGPTLLTRPGQPTLTRVPPPILPRPS 60

Query: 220 QQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRFVQ 399
           QQTGSSNVNTFRP                                 RLR+DDLPPSRFVQ
Sbjct: 61  QQTGSSNVNTFRPAYSSFSSGYGAYGNSFYGNYSPYSYGYNGLGYNRLRVDDLPPSRFVQ 120

Query: 400 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 579
           QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
Sbjct: 121 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 180

Query: 580 AFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFLFF 759
           AFALVRTIRYLYRRLQWM+GLRRGSENEDLWAESE TVACLGAEDRAANSAKSWPIFLFF
Sbjct: 181 AFALVRTIRYLYRRLQWMIGLRRGSENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFF 240

Query: 760 AVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDMLN 939
           AVILGGPYLIWKLLST++DEVTD+TNWASGEDDHVVARAEYDF AVSEE+ISFRAGDMLN
Sbjct: 241 AVILGGPYLIWKLLSTHNDEVTDNTNWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN 300

Query: 940 LALKDSNPECVAGFWASL 993
           LALK+  P+      ASL
Sbjct: 301 LALKEQQPKVRGWLLASL 318


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,691,483
Number of extensions: 867193
Number of successful extensions: 3749
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3730
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008405
         (998 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003125154.2| PREDICTED: hypothetical protein LOC100523180...   469   e-133
Alignment   gi|XP_003125162.2| PREDICTED: putative tRNA pseudouridine synth...    50   1e-06

>ref|XP_003125154.2| PREDICTED: hypothetical protein LOC100523180 [Sus scrofa].
          Length = 1126

 Score =  469 bits (1208), Expect = e-133
 Identities = 243/288 (84%), Positives = 246/288 (85%)
 Frame = +1

Query: 130  QSADLGPTILTRPGQPTLSRVPPPILPRPSQQTGSSNVNTFRPXXXXXXXXXXXXXXXXX 309
            +SADLGPTILTRPGQPTLSRVPPPILPRPSQQTGSSNVNTFRP                 
Sbjct: 754  RSADLGPTILTRPGQPTLSRVPPPILPRPSQQTGSSNVNTFRPAYSSFSSGYGAFGNSYY 813

Query: 310  XXXXXXXXXXXXXXXXRLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDAT 489
                            RLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDAT
Sbjct: 814  GSYSPYSYGYNGLGYNRLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDAT 873

Query: 490  FSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMMGLRRGSENEDL 669
            FSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMMGLRRGSENEDL
Sbjct: 874  FSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMMGLRRGSENEDL 933

Query: 670  WAESERTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTYSDEVTDSTNWASG 849
            WAESERTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTYSDEVTDSTNWASG
Sbjct: 934  WAESERTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTYSDEVTDSTNWASG 993

Query: 850  EDDHVVARAEYDFVAVSEEKISFRAGDMLNLALKDSNPECVAGFWASL 993
            EDDHVVARAEYDFVAVSEE+ISFRAGDMLNLALK+  P       ASL
Sbjct: 994  EDDHVVARAEYDFVAVSEEEISFRAGDMLNLALKEQQPRVRGWLLASL 1041


>ref|XP_003125162.2| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Sus
           scrofa].
          Length = 482

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 130 GKWGQVPVPARPPESGGSPRV 68
           GKWGQVPVPARPPESGGSPRV
Sbjct: 462 GKWGQVPVPARPPESGGSPRV 482


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,390,434
Number of extensions: 540773
Number of successful extensions: 2336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2326
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008405
         (998 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_076140.2| peroxisomal membrane protein PEX13 [Mus musculu...   464   e-131

>ref|NP_076140.2| peroxisomal membrane protein PEX13 [Mus musculus].
          Length = 405

 Score =  464 bits (1195), Expect = e-131
 Identities = 242/320 (75%), Positives = 256/320 (80%), Gaps = 2/320 (0%)
 Frame = +1

Query: 40  MASQXXXXXXXWETRRIXXXXXXXXXXX--TFQSADLGPTILTRPGQPTLSRVPPPILPR 213
           MASQ       WE+RRI             T+QSADLGPT+LTRPGQPTL+RVPPPILPR
Sbjct: 1   MASQPPPPPKPWESRRIPGAGPGPGSGPGPTYQSADLGPTLLTRPGQPTLTRVPPPILPR 60

Query: 214 PSQQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRF 393
           PSQQTGS+NVNTFRP                                 RLR+DDLPPSRF
Sbjct: 61  PSQQTGSNNVNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGFNRLRVDDLPPSRF 120

Query: 394 VQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKV 573
           VQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKV
Sbjct: 121 VQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKV 180

Query: 574 FSAFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFL 753
           FSAFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESE TVACL AED+A NSAKSWPIFL
Sbjct: 181 FSAFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESEGTVACLSAEDQATNSAKSWPIFL 240

Query: 754 FFAVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDM 933
           FFAVILGGPYLIWKLLST++DEVTD+TNWASGEDDHVVARAEYDFVAVS+E+ISFRAGDM
Sbjct: 241 FFAVILGGPYLIWKLLSTHNDEVTDNTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDM 300

Query: 934 LNLALKDSNPECVAGFWASL 993
           LNLALK+  P+      ASL
Sbjct: 301 LNLALKEQQPKVRGWLLASL 320


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,064,058
Number of extensions: 721418
Number of successful extensions: 2852
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2840
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008405
         (998 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002609.1| peroxisome biogenesis factor 13 [Homo sapiens].      465   e-131

>ref|NP_002609.1| peroxisome biogenesis factor 13 [Homo sapiens].
          Length = 403

 Score =  465 bits (1196), Expect = e-131
 Identities = 243/318 (76%), Positives = 253/318 (79%)
 Frame = +1

Query: 40  MASQXXXXXXXWETRRIXXXXXXXXXXXTFQSADLGPTILTRPGQPTLSRVPPPILPRPS 219
           MASQ       WETRRI           TFQSADLGPT++TRPGQP L+RVPPPILPRPS
Sbjct: 1   MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPS 60

Query: 220 QQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRFVQ 399
           QQTGSS+VNTFRP                                 RLR+DDLPPSRFVQ
Sbjct: 61  QQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQ 120

Query: 400 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 579
           QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
Sbjct: 121 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 180

Query: 580 AFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFLFF 759
           AFALVRTIRYLYRRLQ M+GLRRGSENEDLWAESE TVACLGAEDRAA SAKSWPIFLFF
Sbjct: 181 AFALVRTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFF 240

Query: 760 AVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDMLN 939
           AVILGGPYLIWKLLST+SDEVTDS NWASGEDDHVVARAEYDF AVSEE+ISFRAGDMLN
Sbjct: 241 AVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN 300

Query: 940 LALKDSNPECVAGFWASL 993
           LALK+  P+      ASL
Sbjct: 301 LALKEQQPKVRGWLLASL 318


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,109,283
Number of extensions: 856163
Number of successful extensions: 3707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3693
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008405
         (998 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                        1370   0.0  

>Sscrofa_Chr03 
||          Length = 144787322

 Score = 1370 bits (691), Expect = 0.0
 Identities = 694/695 (99%)
 Strand = Plus / Minus

                                                                            
Query: 132      atctgctgatttaggccccactatattgacaagacctggacaaccaacactgagcagagt 191
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864686 atctgcagatttaggccccactatattgacaagacctggacaaccaacactgagcagagt 84864627

                                                                            
Query: 192      gccaccacctattcttccaaggccatcacagcagacaggaagcagcaatgtgaacacttt 251
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864626 gccaccacctattcttccaaggccatcacagcagacaggaagcagcaatgtgaacacttt 84864567

                                                                            
Query: 252      cagacctgcttacagttcattttcttctggatatggtgcctttggaaattcatattatgg 311
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864566 cagacctgcttacagttcattttcttctggatatggtgcctttggaaattcatattatgg 84864507

                                                                            
Query: 312      aagctatagcccttatagttatggatataatgggttgggctataaccgcctccgtataga 371
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864506 aagctatagcccttatagttatggatataatgggttgggctataaccgcctccgtataga 84864447

                                                                            
Query: 372      tgatcttccgcctagtagatttgttcagcaagctgaagaaagcagcagaggtgcatttca 431
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864446 tgatcttccgcctagtagatttgttcagcaagctgaagaaagcagcagaggtgcatttca 84864387

                                                                            
Query: 432      gtccattgaaagtattgtacatgcatttgcctctgtcagtatgatgatggatgctacctt 491
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864386 gtccattgaaagtattgtacatgcatttgcctctgtcagtatgatgatggatgctacctt 84864327

                                                                            
Query: 492      ttcagctgtctataacagtttcagggctgtattggatgtagcaaaccacttttcccgatt 551
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864326 ttcagctgtctataacagtttcagggctgtattggatgtagcaaaccacttttcccgatt 84864267

                                                                            
Query: 552      aaaaatacacttcacaaaggttttttcagcttttgcactagttaggactataaggtatct 611
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864266 aaaaatacacttcacaaaggttttttcagcttttgcactagttaggactataaggtatct 84864207

                                                                            
Query: 612      ttatagacggttacagtggatgatgggtttaagaagaggctctgagaatgaagacctatg 671
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864206 ttatagacggttacagtggatgatgggtttaagaagaggctctgagaatgaagacctatg 84864147

                                                                            
Query: 672      ggcagaaagtgaaaggactgtggcttgccttggtgctgaggacagagcagctaactcagc 731
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864146 ggcagaaagtgaaaggactgtggcttgccttggtgctgaggacagagcagctaactcagc 84864087

                                                                            
Query: 732      aaaatcttggccaatattcttattctttgctgttatccttggtggtccttacctcatctg 791
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864086 aaaatcttggccaatattcttattctttgctgttatccttggtggtccttacctcatctg 84864027

                                                   
Query: 792      gaaattgctgtctacttacagtgatgaagtaacag 826
                |||||||||||||||||||||||||||||||||||
Sbjct: 84864026 gaaattgctgtctacttacagtgatgaagtaacag 84863992



 Score =  258 bits (130), Expect = 5e-66
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84748705 agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 84748646

                                                                            
Query: 62       cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84748645 cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 84748586

                          
Query: 122      ccactttcca 131
                ||||||||||
Sbjct: 84748585 ccactttcca 84748576



 Score =  258 bits (130), Expect = 5e-66
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84883635 agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 84883576

                                                                            
Query: 62       cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84883575 cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 84883516

                          
Query: 122      ccactttcca 131
                ||||||||||
Sbjct: 84883515 ccactttcca 84883506



 Score =  246 bits (124), Expect = 2e-62
 Identities = 127/128 (99%)
 Strand = Plus / Minus

                                                                            
Query: 825      agacagtaccaactgggcgagtggtgaggatgaccatgtagttgctagagcagaatacga 884
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84857305 agacagtaccaactgggcgagtggtgaggatgaccatgtagttgctagagcagaatacga 84857246

                                                                            
Query: 885      ttttgttgctgtatctgaagaaaaaatttctttccgggctggcgatatgctaaacctagc 944
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 84857245 ttttgttgctgtatctgaagaagaaatttctttccgggctggcgatatgctaaacctagc 84857186

                        
Query: 945      tctcaaag 952
                ||||||||
Sbjct: 84857185 tctcaaag 84857178



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 953      acagcaacccagagtgcgtggctggcttctgg 984
                ||||||||||||||||||||||||||||||||
Sbjct: 84853439 acagcaacccagagtgcgtggctggcttctgg 84853408


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,448,714
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 5
Length of query: 998
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 977
Effective length of database: 2,808,413,156
Effective search space: 2743819653412
Effective search space used: 2743819653412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)