Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008405
(998 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069680.1| peroxisomal biogenesis factor 13 [Bos taurus]. 474 e-134
>ref|NP_001069680.1| peroxisomal biogenesis factor 13 [Bos taurus].
Length = 403
Score = 474 bits (1220), Expect = e-134
Identities = 247/318 (77%), Positives = 255/318 (80%)
Frame = +1
Query: 40 MASQXXXXXXXWETRRIXXXXXXXXXXXTFQSADLGPTILTRPGQPTLSRVPPPILPRPS 219
MASQ WETRRI TFQSA+LGPT+LTRPGQPTL+RVPPPILPRPS
Sbjct: 1 MASQPPPPPKPWETRRIPGTGPGPGPGPTFQSAELGPTLLTRPGQPTLTRVPPPILPRPS 60
Query: 220 QQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRFVQ 399
QQTGS N+NTFRP RLRIDDLPPSRFVQ
Sbjct: 61 QQTGSGNLNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGYNRLRIDDLPPSRFVQ 120
Query: 400 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 579
QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
Sbjct: 121 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 180
Query: 580 AFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFLFF 759
AFALVRTIRYLYRRLQWM+GLRRG ENEDLWAESE TVACLGAEDRAANSAKSWPIFLFF
Sbjct: 181 AFALVRTIRYLYRRLQWMIGLRRGLENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFF 240
Query: 760 AVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDMLN 939
AVILGGPYLIWKLLST+SDEVTDSTNWASGEDDHVVARAEYDFVAVSEE+ISFRAGDMLN
Sbjct: 241 AVILGGPYLIWKLLSTHSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEEISFRAGDMLN 300
Query: 940 LALKDSNPECVAGFWASL 993
LALK+ P ASL
Sbjct: 301 LALKEQQPRVRGWLLASL 318
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,249,985
Number of extensions: 841899
Number of successful extensions: 3559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3535
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008405
(998 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531837.1| PREDICTED: similar to Peroxisomal membrane prot... 475 e-134
>ref|XP_531837.1| PREDICTED: similar to Peroxisomal membrane protein PEX13
(Peroxin-13) [Canis familiaris].
Length = 403
Score = 475 bits (1223), Expect = e-134
Identities = 246/318 (77%), Positives = 257/318 (80%)
Frame = +1
Query: 40 MASQXXXXXXXWETRRIXXXXXXXXXXXTFQSADLGPTILTRPGQPTLSRVPPPILPRPS 219
MASQ WETRRI +FQSADLGPT+LTRPGQPTL+RVPPPILPRPS
Sbjct: 1 MASQPPPPPKPWETRRIPGVGPGPGPGPSFQSADLGPTLLTRPGQPTLTRVPPPILPRPS 60
Query: 220 QQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRFVQ 399
QQTGSSNVNTFRP RLR+DDLPPSRFVQ
Sbjct: 61 QQTGSSNVNTFRPAYSSFSSGYGAYGNSFYGNYSPYSYGYNGLGYNRLRVDDLPPSRFVQ 120
Query: 400 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 579
QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
Sbjct: 121 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 180
Query: 580 AFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFLFF 759
AFALVRTIRYLYRRLQWM+GLRRGSENEDLWAESE TVACLGAEDRAANSAKSWPIFLFF
Sbjct: 181 AFALVRTIRYLYRRLQWMIGLRRGSENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFF 240
Query: 760 AVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDMLN 939
AVILGGPYLIWKLLST++DEVTD+TNWASGEDDHVVARAEYDF AVSEE+ISFRAGDMLN
Sbjct: 241 AVILGGPYLIWKLLSTHNDEVTDNTNWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN 300
Query: 940 LALKDSNPECVAGFWASL 993
LALK+ P+ ASL
Sbjct: 301 LALKEQQPKVRGWLLASL 318
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,691,483
Number of extensions: 867193
Number of successful extensions: 3749
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3730
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008405
(998 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125154.2| PREDICTED: hypothetical protein LOC100523180... 469 e-133
Alignment gi|XP_003125162.2| PREDICTED: putative tRNA pseudouridine synth... 50 1e-06
>ref|XP_003125154.2| PREDICTED: hypothetical protein LOC100523180 [Sus scrofa].
Length = 1126
Score = 469 bits (1208), Expect = e-133
Identities = 243/288 (84%), Positives = 246/288 (85%)
Frame = +1
Query: 130 QSADLGPTILTRPGQPTLSRVPPPILPRPSQQTGSSNVNTFRPXXXXXXXXXXXXXXXXX 309
+SADLGPTILTRPGQPTLSRVPPPILPRPSQQTGSSNVNTFRP
Sbjct: 754 RSADLGPTILTRPGQPTLSRVPPPILPRPSQQTGSSNVNTFRPAYSSFSSGYGAFGNSYY 813
Query: 310 XXXXXXXXXXXXXXXXRLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDAT 489
RLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDAT
Sbjct: 814 GSYSPYSYGYNGLGYNRLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDAT 873
Query: 490 FSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMMGLRRGSENEDL 669
FSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMMGLRRGSENEDL
Sbjct: 874 FSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMMGLRRGSENEDL 933
Query: 670 WAESERTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTYSDEVTDSTNWASG 849
WAESERTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTYSDEVTDSTNWASG
Sbjct: 934 WAESERTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTYSDEVTDSTNWASG 993
Query: 850 EDDHVVARAEYDFVAVSEEKISFRAGDMLNLALKDSNPECVAGFWASL 993
EDDHVVARAEYDFVAVSEE+ISFRAGDMLNLALK+ P ASL
Sbjct: 994 EDDHVVARAEYDFVAVSEEEISFRAGDMLNLALKEQQPRVRGWLLASL 1041
>ref|XP_003125162.2| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Sus
scrofa].
Length = 482
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -2
Query: 130 GKWGQVPVPARPPESGGSPRV 68
GKWGQVPVPARPPESGGSPRV
Sbjct: 462 GKWGQVPVPARPPESGGSPRV 482
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,390,434
Number of extensions: 540773
Number of successful extensions: 2336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2326
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008405
(998 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076140.2| peroxisomal membrane protein PEX13 [Mus musculu... 464 e-131
>ref|NP_076140.2| peroxisomal membrane protein PEX13 [Mus musculus].
Length = 405
Score = 464 bits (1195), Expect = e-131
Identities = 242/320 (75%), Positives = 256/320 (80%), Gaps = 2/320 (0%)
Frame = +1
Query: 40 MASQXXXXXXXWETRRIXXXXXXXXXXX--TFQSADLGPTILTRPGQPTLSRVPPPILPR 213
MASQ WE+RRI T+QSADLGPT+LTRPGQPTL+RVPPPILPR
Sbjct: 1 MASQPPPPPKPWESRRIPGAGPGPGSGPGPTYQSADLGPTLLTRPGQPTLTRVPPPILPR 60
Query: 214 PSQQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRF 393
PSQQTGS+NVNTFRP RLR+DDLPPSRF
Sbjct: 61 PSQQTGSNNVNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGFNRLRVDDLPPSRF 120
Query: 394 VQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKV 573
VQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKV
Sbjct: 121 VQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKV 180
Query: 574 FSAFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFL 753
FSAFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESE TVACL AED+A NSAKSWPIFL
Sbjct: 181 FSAFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESEGTVACLSAEDQATNSAKSWPIFL 240
Query: 754 FFAVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDM 933
FFAVILGGPYLIWKLLST++DEVTD+TNWASGEDDHVVARAEYDFVAVS+E+ISFRAGDM
Sbjct: 241 FFAVILGGPYLIWKLLSTHNDEVTDNTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDM 300
Query: 934 LNLALKDSNPECVAGFWASL 993
LNLALK+ P+ ASL
Sbjct: 301 LNLALKEQQPKVRGWLLASL 320
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,064,058
Number of extensions: 721418
Number of successful extensions: 2852
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2840
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008405
(998 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002609.1| peroxisome biogenesis factor 13 [Homo sapiens]. 465 e-131
>ref|NP_002609.1| peroxisome biogenesis factor 13 [Homo sapiens].
Length = 403
Score = 465 bits (1196), Expect = e-131
Identities = 243/318 (76%), Positives = 253/318 (79%)
Frame = +1
Query: 40 MASQXXXXXXXWETRRIXXXXXXXXXXXTFQSADLGPTILTRPGQPTLSRVPPPILPRPS 219
MASQ WETRRI TFQSADLGPT++TRPGQP L+RVPPPILPRPS
Sbjct: 1 MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPS 60
Query: 220 QQTGSSNVNTFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRIDDLPPSRFVQ 399
QQTGSS+VNTFRP RLR+DDLPPSRFVQ
Sbjct: 61 QQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQ 120
Query: 400 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 579
QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS
Sbjct: 121 QAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFS 180
Query: 580 AFALVRTIRYLYRRLQWMMGLRRGSENEDLWAESERTVACLGAEDRAANSAKSWPIFLFF 759
AFALVRTIRYLYRRLQ M+GLRRGSENEDLWAESE TVACLGAEDRAA SAKSWPIFLFF
Sbjct: 181 AFALVRTIRYLYRRLQRMLGLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFF 240
Query: 760 AVILGGPYLIWKLLSTYSDEVTDSTNWASGEDDHVVARAEYDFVAVSEEKISFRAGDMLN 939
AVILGGPYLIWKLLST+SDEVTDS NWASGEDDHVVARAEYDF AVSEE+ISFRAGDMLN
Sbjct: 241 AVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLN 300
Query: 940 LALKDSNPECVAGFWASL 993
LALK+ P+ ASL
Sbjct: 301 LALKEQQPKVRGWLLASL 318
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,109,283
Number of extensions: 856163
Number of successful extensions: 3707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3693
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008405
(998 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1370 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 1370 bits (691), Expect = 0.0
Identities = 694/695 (99%)
Strand = Plus / Minus
Query: 132 atctgctgatttaggccccactatattgacaagacctggacaaccaacactgagcagagt 191
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864686 atctgcagatttaggccccactatattgacaagacctggacaaccaacactgagcagagt 84864627
Query: 192 gccaccacctattcttccaaggccatcacagcagacaggaagcagcaatgtgaacacttt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864626 gccaccacctattcttccaaggccatcacagcagacaggaagcagcaatgtgaacacttt 84864567
Query: 252 cagacctgcttacagttcattttcttctggatatggtgcctttggaaattcatattatgg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864566 cagacctgcttacagttcattttcttctggatatggtgcctttggaaattcatattatgg 84864507
Query: 312 aagctatagcccttatagttatggatataatgggttgggctataaccgcctccgtataga 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864506 aagctatagcccttatagttatggatataatgggttgggctataaccgcctccgtataga 84864447
Query: 372 tgatcttccgcctagtagatttgttcagcaagctgaagaaagcagcagaggtgcatttca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864446 tgatcttccgcctagtagatttgttcagcaagctgaagaaagcagcagaggtgcatttca 84864387
Query: 432 gtccattgaaagtattgtacatgcatttgcctctgtcagtatgatgatggatgctacctt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864386 gtccattgaaagtattgtacatgcatttgcctctgtcagtatgatgatggatgctacctt 84864327
Query: 492 ttcagctgtctataacagtttcagggctgtattggatgtagcaaaccacttttcccgatt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864326 ttcagctgtctataacagtttcagggctgtattggatgtagcaaaccacttttcccgatt 84864267
Query: 552 aaaaatacacttcacaaaggttttttcagcttttgcactagttaggactataaggtatct 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864266 aaaaatacacttcacaaaggttttttcagcttttgcactagttaggactataaggtatct 84864207
Query: 612 ttatagacggttacagtggatgatgggtttaagaagaggctctgagaatgaagacctatg 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864206 ttatagacggttacagtggatgatgggtttaagaagaggctctgagaatgaagacctatg 84864147
Query: 672 ggcagaaagtgaaaggactgtggcttgccttggtgctgaggacagagcagctaactcagc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864146 ggcagaaagtgaaaggactgtggcttgccttggtgctgaggacagagcagctaactcagc 84864087
Query: 732 aaaatcttggccaatattcttattctttgctgttatccttggtggtccttacctcatctg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84864086 aaaatcttggccaatattcttattctttgctgttatccttggtggtccttacctcatctg 84864027
Query: 792 gaaattgctgtctacttacagtgatgaagtaacag 826
|||||||||||||||||||||||||||||||||||
Sbjct: 84864026 gaaattgctgtctacttacagtgatgaagtaacag 84863992
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 2 agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84748705 agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 84748646
Query: 62 cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84748645 cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 84748586
Query: 122 ccactttcca 131
||||||||||
Sbjct: 84748585 ccactttcca 84748576
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 2 agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84883635 agagcccagtgcagagcggcagccgagaggaggtggagatggcgtcccagccgcctcctc 84883576
Query: 62 cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84883575 cccctaaaccctgggagacccgccggattccgggggccgggccgggaccgggacctggcc 84883516
Query: 122 ccactttcca 131
||||||||||
Sbjct: 84883515 ccactttcca 84883506
Score = 246 bits (124), Expect = 2e-62
Identities = 127/128 (99%)
Strand = Plus / Minus
Query: 825 agacagtaccaactgggcgagtggtgaggatgaccatgtagttgctagagcagaatacga 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84857305 agacagtaccaactgggcgagtggtgaggatgaccatgtagttgctagagcagaatacga 84857246
Query: 885 ttttgttgctgtatctgaagaaaaaatttctttccgggctggcgatatgctaaacctagc 944
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 84857245 ttttgttgctgtatctgaagaagaaatttctttccgggctggcgatatgctaaacctagc 84857186
Query: 945 tctcaaag 952
||||||||
Sbjct: 84857185 tctcaaag 84857178
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 953 acagcaacccagagtgcgtggctggcttctgg 984
||||||||||||||||||||||||||||||||
Sbjct: 84853439 acagcaacccagagtgcgtggctggcttctgg 84853408
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,448,714
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 5
Length of query: 998
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 977
Effective length of database: 2,808,413,156
Effective search space: 2743819653412
Effective search space used: 2743819653412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)