Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008419
(1031 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179324.1| 39S ribosomal protein L10, mitochondrial [Bo... 385 e-107
Alignment gi|XP_002695963.1| PREDICTED: mitochondrial ribosomal protein L... 385 e-107
>ref|NP_001179324.1| 39S ribosomal protein L10, mitochondrial [Bos taurus].
Length = 262
Score = 385 bits (988), Expect = e-107
Identities = 197/252 (78%), Positives = 209/252 (82%)
Frame = +2
Query: 20 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXXX 199
MAA VAGMLRGGLLPQAGRLPT Q +RYGSKAVTRHRRVMHFERQKLMAVTEYI PK
Sbjct: 1 MAAAVAGMLRGGLLPQAGRLPTHQFIRYGSKAVTRHRRVMHFERQKLMAVTEYIAPKPVV 60
Query: 200 XXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXXX 379
QEETGL+RLLRREIAAVFRDNRMIAVCQ+VA+SAED
Sbjct: 61 NPRCLPPPPSPPQEETGLIRLLRREIAAVFRDNRMIAVCQNVAMSAEDKLLMRHQLRKHK 120
Query: 380 XXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 559
MK+FPNQ+LKPFLE+SKYQNLLPLFVGHNLLLVSEEPKVKEMVRILK +PFLPLLGGC
Sbjct: 121 ILMKVFPNQILKPFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGC 180
Query: 560 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 739
IDDTILSRQGFINYSKLPSLAL QGELVGGLT LTA+T+S+LQH P QLTALLDQY +QQ
Sbjct: 181 IDDTILSRQGFINYSKLPSLALAQGELVGGLTLLTARTHSLLQHHPLQLTALLDQYARQQ 240
Query: 740 QEGHPAVPASGQ 775
EG P VPAS Q
Sbjct: 241 HEGDPVVPASAQ 252
>ref|XP_002695963.1| PREDICTED: mitochondrial ribosomal protein L10 [Bos taurus].
Length = 262
Score = 385 bits (988), Expect = e-107
Identities = 197/252 (78%), Positives = 209/252 (82%)
Frame = +2
Query: 20 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXXX 199
MAA VAGMLRGGLLPQAGRLPT Q +RYGSKAVTRHRRVMHFERQKLMAVTEYI PK
Sbjct: 1 MAAAVAGMLRGGLLPQAGRLPTHQFIRYGSKAVTRHRRVMHFERQKLMAVTEYIAPKPVV 60
Query: 200 XXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXXX 379
QEETGL+RLLRREIAAVFRDNRMIAVCQ+VA+SAED
Sbjct: 61 NPRCLPPPPSPPQEETGLIRLLRREIAAVFRDNRMIAVCQNVAMSAEDKLLMRHQLRKHK 120
Query: 380 XXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 559
MK+FPNQ+LKPFLE+SKYQNLLPLFVGHNLLLVSEEPKVKEMVRILK +PFLPLLGGC
Sbjct: 121 ILMKVFPNQILKPFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGC 180
Query: 560 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 739
IDDTILSRQGFINYSKLPSLAL QGELVGGLT LTA+T+S+LQH P QLTALLDQY +QQ
Sbjct: 181 IDDTILSRQGFINYSKLPSLALAQGELVGGLTLLTARTHSLLQHHPLQLTALLDQYARQQ 240
Query: 740 QEGHPAVPASGQ 775
EG P VPAS Q
Sbjct: 241 HEGDPVVPASAQ 252
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,419,844
Number of extensions: 1175494
Number of successful extensions: 8026
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7611
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008419
(1031 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850888.1| PREDICTED: similar to mitochondrial ribosomal p... 379 e-105
>ref|XP_850888.1| PREDICTED: similar to mitochondrial ribosomal protein L10 isoform a
[Canis familiaris].
Length = 262
Score = 379 bits (974), Expect = e-105
Identities = 196/252 (77%), Positives = 208/252 (82%)
Frame = +2
Query: 20 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXXX 199
MAA VAGMLRGGLLPQAGRLPT QTVRYGSKAVTRHRRVMHFERQKLMA+TEYIPPK
Sbjct: 1 MAAAVAGMLRGGLLPQAGRLPTLQTVRYGSKAVTRHRRVMHFERQKLMALTEYIPPKPAV 60
Query: 200 XXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXXX 379
QEETGL+RLLRREI VFR+NRMIAVCQ+VALSAED
Sbjct: 61 NPRCLPSPPSPPQEETGLIRLLRREIDEVFRENRMIAVCQNVALSAEDKLLIRHRLRKHK 120
Query: 380 XXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 559
MKIFPNQVLKPFLE+SKYQNLLPLFVGHNLLLVSEEPKVKEMVRILK +PFLPLLGGC
Sbjct: 121 ILMKIFPNQVLKPFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGC 180
Query: 560 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 739
IDDTI+SRQGFINYS+LPSLAL QGELVGGLTF AQT+ +LQHQP QLTALLDQY++QQ
Sbjct: 181 IDDTIVSRQGFINYSQLPSLALAQGELVGGLTFRMAQTHLLLQHQPFQLTALLDQYIRQQ 240
Query: 740 QEGHPAVPASGQ 775
QEG PAS Q
Sbjct: 241 QEGDSVTPASEQ 252
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,154,725
Number of extensions: 1211829
Number of successful extensions: 8126
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7757
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008419
(1031 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131579.1| PREDICTED: 39S ribosomal protein L10, mitoch... 429 e-120
>ref|XP_003131579.1| PREDICTED: 39S ribosomal protein L10, mitochondrial-like [Sus
scrofa].
Length = 262
Score = 429 bits (1102), Expect = e-120
Identities = 223/252 (88%), Positives = 223/252 (88%)
Frame = +2
Query: 20 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXXX 199
MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPK
Sbjct: 1 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKPTI 60
Query: 200 XXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXXX 379
QEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAED
Sbjct: 61 NPRCLPPPPTPPQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDKLLLRHQLRKHK 120
Query: 380 XXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 559
MKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC
Sbjct: 121 ILMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 180
Query: 560 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 739
IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ
Sbjct: 181 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 240
Query: 740 QEGHPAVPASGQ 775
QEGHPAVPASGQ
Sbjct: 241 QEGHPAVPASGQ 252
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,181,610
Number of extensions: 764459
Number of successful extensions: 5248
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4921
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008419
(1031 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080430.1| 39S ribosomal protein L10, mitochondrial precur... 337 9e-93
>ref|NP_080430.1| 39S ribosomal protein L10, mitochondrial precursor [Mus musculus].
Length = 262
Score = 337 bits (864), Expect = 9e-93
Identities = 173/250 (69%), Positives = 199/250 (79%)
Frame = +2
Query: 20 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXXX 199
MAA VAG+LRGGL P+A LPT QTVR+GSKAVTRH RVMHF+RQKLMA+TEYIPPK
Sbjct: 1 MAAAVAGILRGGLPPRAAWLPTLQTVRHGSKAVTRHWRVMHFQRQKLMAITEYIPPKPAI 60
Query: 200 XXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXXX 379
+EE+GLVRLLR++I AVFRDNRMIAVCQ+VALSAED
Sbjct: 61 NPRCLPPPPKPPKEESGLVRLLRQDIVAVFRDNRMIAVCQNVALSAEDKLLLRHQLRKHK 120
Query: 380 XXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 559
+K+FP+QVLKPFLE SKY+NLLPLFVGHNLLLVSEEPKVKEMVR+LK +PFLPLLGGC
Sbjct: 121 IFIKVFPSQVLKPFLENSKYRNLLPLFVGHNLLLVSEEPKVKEMVRVLKSVPFLPLLGGC 180
Query: 560 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 739
+DDTILSRQG ++Y+KLPSL +QG+LVGGLT L AQT +LQHQP QLT+LLDQYVK+Q
Sbjct: 181 VDDTILSRQGLVDYAKLPSLDQLQGQLVGGLTHLMAQTRYLLQHQPVQLTSLLDQYVKEQ 240
Query: 740 QEGHPAVPAS 769
EG A A+
Sbjct: 241 NEGDCATSAN 250
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,772,478
Number of extensions: 976083
Number of successful extensions: 6293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5896
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008419
(1031 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660298.2| 39S ribosomal protein L10, mitochondrial isofor... 375 e-104
Alignment gi|NP_683685.1| 39S ribosomal protein L10, mitochondrial isofor... 346 2e-95
>ref|NP_660298.2| 39S ribosomal protein L10, mitochondrial isoform a precursor [Homo
sapiens].
Length = 261
Score = 375 bits (963), Expect = e-104
Identities = 192/252 (76%), Positives = 210/252 (83%)
Frame = +2
Query: 20 MAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXXX 199
MAA VAGMLRGGLLPQAGRLPT QTVRYGSKAVTRHRRVMHF+RQKLMAVTEYIPPK
Sbjct: 1 MAAAVAGMLRGGLLPQAGRLPTLQTVRYGSKAVTRHRRVMHFQRQKLMAVTEYIPPKPAI 60
Query: 200 XXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXXX 379
QEE GL+RLLRREIAAVF+DNRMIAVCQ+VALSAED
Sbjct: 61 HPSCLPSPPSPPQEEIGLIRLLRREIAAVFQDNRMIAVCQNVALSAEDKLLMRHQLRKHK 120
Query: 380 XXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGC 559
MK+FPNQVLKPFLE+SKYQNLLPLFVGHN+LLVSEEPKVKEMVRIL+ +PFLPLLGGC
Sbjct: 121 ILMKVFPNQVLKPFLEDSKYQNLLPLFVGHNMLLVSEEPKVKEMVRILRTVPFLPLLGGC 180
Query: 560 IDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQQ 739
IDDTILSRQGFINYSKLPSL LVQGELVGGLT LTAQT+S+LQHQP QLT LLDQY+++Q
Sbjct: 181 IDDTILSRQGFINYSKLPSLPLVQGELVGGLTCLTAQTHSLLQHQPLQLTTLLDQYIREQ 240
Query: 740 QEGHPAVPASGQ 775
+E + A+G+
Sbjct: 241 REKDSVMSANGK 252
>ref|NP_683685.1| 39S ribosomal protein L10, mitochondrial isoform b [Homo sapiens].
Length = 271
Score = 346 bits (888), Expect = 2e-95
Identities = 181/253 (71%), Positives = 201/253 (79%)
Frame = +2
Query: 17 AMAAVVAGMLRGGLLPQAGRLPTFQTVRYGSKAVTRHRRVMHFERQKLMAVTEYIPPKXX 196
A A+ VAG+ GRLPT QTVRYGSKAVTRHRRVMHF+RQKLMAVTEYIPPK
Sbjct: 18 ASASQVAGI--------TGRLPTLQTVRYGSKAVTRHRRVMHFQRQKLMAVTEYIPPKPA 69
Query: 197 XXXXXXXXXXXXXQEETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDXXXXXXXXXXX 376
QEE GL+RLLRREIAAVF+DNRMIAVCQ+VALSAED
Sbjct: 70 IHPSCLPSPPSPPQEEIGLIRLLRREIAAVFQDNRMIAVCQNVALSAEDKLLMRHQLRKH 129
Query: 377 XXXMKIFPNQVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGG 556
MK+FPNQVLKPFLE+SKYQNLLPLFVGHN+LLVSEEPKVKEMVRIL+ +PFLPLLGG
Sbjct: 130 KILMKVFPNQVLKPFLEDSKYQNLLPLFVGHNMLLVSEEPKVKEMVRILRTVPFLPLLGG 189
Query: 557 CIDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQYVKQ 736
CIDDTILSRQGFINYSKLPSL LVQGELVGGLT LTAQT+S+LQHQP QLT LLDQY+++
Sbjct: 190 CIDDTILSRQGFINYSKLPSLPLVQGELVGGLTCLTAQTHSLLQHQPLQLTTLLDQYIRE 249
Query: 737 QQEGHPAVPASGQ 775
Q+E + A+G+
Sbjct: 250 QREKDSVMSANGK 262
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,270,589
Number of extensions: 1184186
Number of successful extensions: 7879
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7408
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008419
(1031 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 932 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 932 bits (470), Expect = 0.0
Identities = 480/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 551 ggtggctgcattgatgacaccatcctcagcaggcagggcttcatcaactactccaagctt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23955315 ggtggctgcattgatgacaccatcctcagcaggcagggcttcatcaactactccaagctt 23955256
Query: 611 cccagcctggccctggtgcagggggagctggtaggagggctcaccttcctcacagcccag 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23955255 cccagcctggccctggtgcagggggagctggtaggagggctcaccttcctcacagcccag 23955196
Query: 671 acctactccatgctgcagcaccagccccgccagctcactgccctgctggatcagtacgtc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23955195 acctactccatgctgcagcaccagccccgccagctcactgccctgctggatcagtacgtc 23955136
Query: 731 aaacagcagcaggaggggcaccctgccgtgccagccagtgggcagccggagcctcctgac 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23955135 aaacagcagcaggaggggcaccctgccgtgccagccagtgggcagccggagcctcctgac 23955076
Query: 791 cctgttccggacccgtagccagcctcttgtacccagcctggccataaatacactctgccc 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23955075 cctgttccggacccgtagccagcctcttgtacccagcctggccataaatacactctgccc 23955016
Query: 851 ctgttggctgtgcccccctgtgttggagatgtggggaactgagggaggggagtggctttt 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23955015 ctgttggctgtgcccccctgtgttggagatgtggggaactgagggaggggagtggctttt 23954956
Query: 911 gttacctggctttcgctgacagcaaccactgccagtacagggccgcctggagatgcagag 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23954955 gttacctggctttcgctgacagcaaccactgccagtacagggccgcctggagatgcagag 23954896
Query: 971 ggattccgcttca-aacagaagctcctcagcagcatctgtgtccctagttttccccaaat 1029
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23954895 ggattccgcttcagaacagaggctcctcagcagcatctgtgtccctagttttccccaaat 23954836
Query: 1030 tg 1031
||
Sbjct: 23954835 tg 23954834
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 240 aggagacaggcctcgtccggctcctccgtcgggagatagcagccgttttccgagacaacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23957461 aggagacaggcctcgtccggctcctccgtcgggagatagcagccgttttccgagacaacc 23957402
Query: 300 ggatgatagcagtctgccagcatgtggctctgagtgcggaggacaagctgctcctgcggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23957401 ggatgatagcagtctgccagcatgtggctctgagtgcggaggacaagctgctcctgcggc 23957342
Query: 360 accagctgcggaagcacaagatcctgatgaagatcttccccaaccaggt 408
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23957341 accagctgcggaagcacaagatcctgatgaagatcttccccaaccaggt 23957293
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 403 ccaggtcctaaagcccttcctggaagagtccaagtaccagaacctgctgcccctctttgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23957051 ccaggtcctaaagcccttcctggaagagtccaagtaccagaacctgctgcccctctttgt 23956992
Query: 463 ggggcacaacctgctgctggtcagtgaagagcccaaggtcaaagagatggtgcgaatcct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23956991 ggggcacaacctgctgctggtcagtgaagagcccaaggtcaaagagatggtgcgaatcct 23956932
Query: 523 gaagggcattcctttcctgccactgctgggtg 554
||||||||||||||||||||||||||||||||
Sbjct: 23956931 gaagggcattcctttcctgccactgctgggtg 23956900
Score = 299 bits (151), Expect = 2e-78
Identities = 165/172 (95%)
Strand = Plus / Minus
Query: 71 ggtcggctgcccaccttccagactgtccggtatggctctaaggctgttacccgccaccgt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23958639 ggtcggctgcccaccttccagactgtccggtatggctctaaggctgttacccgccaccgt 23958580
Query: 131 cgcgtgatgcactttgagcggcagaagctgatggctgtgacagagtatatnnnnnnnaaa 190
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 23958579 cgcgtgatgcactttgagcggcagaagctgatggctgtgacagagtatatcccccccaaa 23958520
Query: 191 cctactatcaacccaagatgcctcccgccccctcccacccctccgcaagagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23958519 cctactatcaacccaagatgcctcccgccccctcccacccctccgcaagagg 23958468
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1 gttcgttcttccggcggcaatggctgcggttgtggctgggatgctacgagggggtctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23960902 gttcgttcttccggcggcaatggctgcggttgtggctgggatgctacgagggggtctcct 23960843
Query: 61 gccccaggcgggt 73
|||||||||||||
Sbjct: 23960842 gccccaggcgggt 23960830
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,767,173
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 5
Length of query: 1031
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1010
Effective length of database: 2,808,413,156
Effective search space: 2836497287560
Effective search space used: 2836497287560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)