Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008422
(1693 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029559.1| nuclear pore complex protein Nup85 [Bos taur... 977 0.0
>ref|NP_001029559.1| nuclear pore complex protein Nup85 [Bos taurus].
Length = 656
Score = 977 bits (2526), Expect(2) = 0.0
Identities = 476/516 (92%), Positives = 492/516 (95%)
Frame = +3
Query: 87 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 266
MEE DGEPTVT IPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMV GCP+IHIIRKD
Sbjct: 1 MEEFDGEPTVTWIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVAGCPFIHIIRKD 60
Query: 267 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 446
IDVY KILRKLFNESHGIFVGLQRIEEE TGKSRKAQLVRVSKNYRSVIRACMEEMHQ A
Sbjct: 61 IDVYSKILRKLFNESHGIFVGLQRIEEELTGKSRKAQLVRVSKNYRSVIRACMEEMHQFA 120
Query: 447 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPXXXXXXDWVRLHVCEVDSL 626
+A KD A G QFSSQ+SILSA+ELIWNLCEILFIEVAPAGP DWVRLHVCEVDSL
Sbjct: 121 VADKDSAIGRQFSSQVSILSAVELIWNLCEILFIEVAPAGPLLLYLLDWVRLHVCEVDSL 180
Query: 627 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 806
SADVLGSENPSKH+ FW LVT LVLQGRLDEARQMLSKEAD++PTSAGMCRVLGDLMRTM
Sbjct: 181 SADVLGSENPSKHESFWNLVTTLVLQGRLDEARQMLSKEADSNPTSAGMCRVLGDLMRTM 240
Query: 807 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 986
P+LSPGNTQTLTELEL+WQHWHEECERHLQDGTFAS+PHLESLCK++LGD+AALLE KEL
Sbjct: 241 PILSPGNTQTLTELELRWQHWHEECERHLQDGTFASNPHLESLCKVLLGDDAALLEHKEL 300
Query: 987 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 1166
LSNWYHFLVTRLLYS PTVKPMDLH YAQSSLDLFLGGESS EPLDNIL+AAFEFDIHQV
Sbjct: 301 LSNWYHFLVTRLLYSQPTVKPMDLHLYAQSSLDLFLGGESSPEPLDNILMAAFEFDIHQV 360
Query: 1167 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 1346
IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
Sbjct: 361 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 420
Query: 1347 VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN 1526
VDY DHCPELGRVSLELHIERIPL+TEQKALKVLRVCEQRQMTEQVRSICK+LAMKAVRN
Sbjct: 421 VDYCDHCPELGRVSLELHIERIPLTTEQKALKVLRVCEQRQMTEQVRSICKVLAMKAVRN 480
Query: 1527 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 1634
NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF
Sbjct: 481 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 516
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 1655 NLGPAMMLSDRLT 1693
NLGPAMMLSDRLT
Sbjct: 524 NLGPAMMLSDRLT 536
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,786,659
Number of extensions: 1931538
Number of successful extensions: 7748
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7725
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 457
Effective length of database: 14,140,958
Effective search space: 6462417806
Effective search space used: 6462417806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008422
(1693 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533121.2| PREDICTED: similar to pericentrin 1 isoform 1 [... 980 0.0
Alignment gi|XP_859218.1| PREDICTED: similar to pericentrin 1 isoform 2 [... 674 0.0
>ref|XP_533121.2| PREDICTED: similar to pericentrin 1 isoform 1 [Canis familiaris].
Length = 655
Score = 980 bits (2534), Expect(2) = 0.0
Identities = 479/516 (92%), Positives = 496/516 (96%)
Frame = +3
Query: 87 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 266
MEELDGEPTVTLIPGVNS+ KQMCFDWGPGEMLVCETSFNK EKSE PGCP+I+IIRKD
Sbjct: 1 MEELDGEPTVTLIPGVNSKMKQMCFDWGPGEMLVCETSFNKNEKSETEPGCPFIYIIRKD 60
Query: 267 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 446
IDVY +ILRKLFNESHGIFVGLQRIEEE TGKSRKAQLVRVSKNYRSVIRACMEEMHQ+A
Sbjct: 61 IDVYSQILRKLFNESHGIFVGLQRIEEELTGKSRKAQLVRVSKNYRSVIRACMEEMHQVA 120
Query: 447 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPXXXXXXDWVRLHVCEVDSL 626
IAAKDPASG QFSSQ+SILSAMELIWNLCEILFIEVAPAGP DWVRLHVCEVDSL
Sbjct: 121 IAAKDPASGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL 180
Query: 627 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 806
ADVLGSENPSKH+ FW LVTILVLQGRLDEARQMLSKEADA+P+SAGMCR+LGDLMRTM
Sbjct: 181 LADVLGSENPSKHESFWNLVTILVLQGRLDEARQMLSKEADANPSSAGMCRILGDLMRTM 240
Query: 807 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 986
PVLSPGNTQTLTELELKWQHWHEECERHLQD TFA+SPHLESLCKI+LGDEAALLEQKEL
Sbjct: 241 PVLSPGNTQTLTELELKWQHWHEECERHLQDSTFAASPHLESLCKILLGDEAALLEQKEL 300
Query: 987 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 1166
L+NWYHFLVTRLLYS PTVKP+DLH YAQSSLDLFLGGESS EPLDNILLAAFEFDIHQV
Sbjct: 301 LNNWYHFLVTRLLYSHPTVKPIDLHLYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQV 360
Query: 1167 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 1346
IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
Sbjct: 361 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 420
Query: 1347 VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN 1526
VDYFD+CPELGRVSLELHIERIPLSTEQKALKVLR+CEQRQMTEQVRSICKILAMKAVRN
Sbjct: 421 VDYFDYCPELGRVSLELHIERIPLSTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRN 480
Query: 1527 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 1634
NRLGSALSWSIRAKDAAFATLVSDRFL+DYCERGCF
Sbjct: 481 NRLGSALSWSIRAKDAAFATLVSDRFLKDYCERGCF 516
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 1655 NLGPAMMLSDRLT 1693
NLGPAMMLSDRLT
Sbjct: 524 NLGPAMMLSDRLT 536
>ref|XP_859218.1| PREDICTED: similar to pericentrin 1 isoform 2 [Canis familiaris].
Length = 378
Score = 674 bits (1740), Expect = 0.0
Identities = 330/364 (90%), Positives = 344/364 (94%)
Frame = +3
Query: 87 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 266
MEELDGEPTVTLIPGVNS+ KQMCFDWGPGEMLVCETSFNK EKSE PGCP+I+IIRKD
Sbjct: 1 MEELDGEPTVTLIPGVNSKMKQMCFDWGPGEMLVCETSFNKNEKSETEPGCPFIYIIRKD 60
Query: 267 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 446
IDVY +ILRKLFNESHGIFVGLQRIEEE TGKSRKAQLVRVSKNYRSVIRACMEEMHQ+A
Sbjct: 61 IDVYSQILRKLFNESHGIFVGLQRIEEELTGKSRKAQLVRVSKNYRSVIRACMEEMHQVA 120
Query: 447 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPXXXXXXDWVRLHVCEVDSL 626
IAAKDPASG QFSSQ+SILSAMELIWNLCEILFIEVAPAGP DWVRLHVCEVDSL
Sbjct: 121 IAAKDPASGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL 180
Query: 627 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 806
ADVLGSENPSKH+ FW LVTILVLQGRLDEARQMLSKEADA+P+SAGMCR+LGDLMRTM
Sbjct: 181 LADVLGSENPSKHESFWNLVTILVLQGRLDEARQMLSKEADANPSSAGMCRILGDLMRTM 240
Query: 807 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 986
PVLSPGNTQTLTELELKWQHWHEECERHLQD TFA+SPHLESLCKI+LGDEAALLEQKEL
Sbjct: 241 PVLSPGNTQTLTELELKWQHWHEECERHLQDSTFAASPHLESLCKILLGDEAALLEQKEL 300
Query: 987 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 1166
L+NWYHFLVTRLLYS PTVKP+DLH YAQSSLDLFLGGESS EPLDNILLAAFEFDIHQV
Sbjct: 301 LNNWYHFLVTRLLYSHPTVKPIDLHLYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQV 360
Query: 1167 IKEC 1178
IKEC
Sbjct: 361 IKEC 364
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,625,741
Number of extensions: 1980651
Number of successful extensions: 7868
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7848
Number of HSP's successfully gapped: 3
Length of query: 564
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 456
Effective length of database: 15,274,216
Effective search space: 6965042496
Effective search space used: 6965042496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008422
(1693 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131259.1| PREDICTED: nuclear pore complex protein Nup8... 1039 0.0
>ref|XP_003131259.1| PREDICTED: nuclear pore complex protein Nup85-like [Sus scrofa].
Length = 656
Score = 1039 bits (2687), Expect(2) = 0.0
Identities = 510/516 (98%), Positives = 510/516 (98%)
Frame = +3
Query: 87 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 266
MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD
Sbjct: 1 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 60
Query: 267 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 446
IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA
Sbjct: 61 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 120
Query: 447 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPXXXXXXDWVRLHVCEVDSL 626
IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGP DWVRLHVCEVDSL
Sbjct: 121 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL 180
Query: 627 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 806
SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM
Sbjct: 181 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 240
Query: 807 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 986
PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL
Sbjct: 241 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 300
Query: 987 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 1166
LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV
Sbjct: 301 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 360
Query: 1167 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 1346
IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
Sbjct: 361 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 420
Query: 1347 VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN 1526
VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN
Sbjct: 421 VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN 480
Query: 1527 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 1634
NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF
Sbjct: 481 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 516
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 1655 NLGPAMMLSDRLT 1693
NLGPAMMLSDRLT
Sbjct: 524 NLGPAMMLSDRLT 536
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,328,370
Number of extensions: 1244864
Number of successful extensions: 5199
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5183
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 460
Effective length of database: 8,754,644
Effective search space: 4027136240
Effective search space used: 4027136240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008422
(1693 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002929.3| nuclear pore complex protein Nup85 [Mus musc... 953 0.0
>ref|NP_001002929.3| nuclear pore complex protein Nup85 [Mus musculus].
Length = 656
Score = 953 bits (2463), Expect(2) = 0.0
Identities = 462/516 (89%), Positives = 491/516 (95%)
Frame = +3
Query: 87 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 266
MEELD EP VT IPGVNS+KKQMCFDWGPGEML+CETSFN+ KSE VP CP+I+IIRKD
Sbjct: 1 MEELDCEPAVTWIPGVNSKKKQMCFDWGPGEMLLCETSFNQTGKSEKVPSCPFIYIIRKD 60
Query: 267 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 446
+DVY +ILRKLFNESHGIFVGLQ+IEEE +GKSRKAQLVRVSKNYRSVIRACMEEMHQ+A
Sbjct: 61 VDVYSQILRKLFNESHGIFVGLQKIEEELSGKSRKAQLVRVSKNYRSVIRACMEEMHQVA 120
Query: 447 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPXXXXXXDWVRLHVCEVDSL 626
IAAKDPASG QFSSQ+SILSAMELIWNLCEILFIEVAPAGP DWVRLHVCEVDSL
Sbjct: 121 IAAKDPASGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL 180
Query: 627 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 806
SADVLG +NPSKH++FW LVT+LVLQGRLDEARQML+KEADA+P+ AGMCRVLGDLMRTM
Sbjct: 181 SADVLGGDNPSKHENFWDLVTVLVLQGRLDEARQMLAKEADANPSCAGMCRVLGDLMRTM 240
Query: 807 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 986
P+LSPGNTQTLTELELKWQHW EECERHLQD TFA++P LESLCKIMLGDEAALLEQKEL
Sbjct: 241 PILSPGNTQTLTELELKWQHWREECERHLQDNTFAANPRLESLCKIMLGDEAALLEQKEL 300
Query: 987 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 1166
LSNWYHFLVTRLLYS PTVKP+DLH YAQSSLD+FLGGESS EPLDNIL+AAFEFDIHQV
Sbjct: 301 LSNWYHFLVTRLLYSNPTVKPIDLHFYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQV 360
Query: 1167 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 1346
IKECSIALSNWWFVAHLTDLLDHC+LLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
Sbjct: 361 IKECSIALSNWWFVAHLTDLLDHCRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 420
Query: 1347 VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN 1526
VDYFD+CPELGRVSLELHIERIPL+TEQKALKVLR+CEQRQMTEQV+SICKILAMKAVRN
Sbjct: 421 VDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVKSICKILAMKAVRN 480
Query: 1527 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 1634
NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF
Sbjct: 481 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 516
Score = 26.6 bits (57), Expect(2) = 0.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 1655 NLGPAMMLSDRLT 1693
NLG AMMLSDRLT
Sbjct: 524 NLGSAMMLSDRLT 536
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,495,693
Number of extensions: 1628418
Number of successful extensions: 6373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6305
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 457
Effective length of database: 12,403,707
Effective search space: 5668494099
Effective search space used: 5668494099
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008422
(1693 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079120.1| nuclear pore complex protein Nup85 [Homo sapien... 967 0.0
>ref|NP_079120.1| nuclear pore complex protein Nup85 [Homo sapiens].
Length = 656
Score = 967 bits (2500), Expect(2) = 0.0
Identities = 473/516 (91%), Positives = 494/516 (95%)
Frame = +3
Query: 87 MEELDGEPTVTLIPGVNSQKKQMCFDWGPGEMLVCETSFNKKEKSEMVPGCPYIHIIRKD 266
MEELDGEPTVTLIPGVNS+K QM FDWGPGEMLVCETSFNKKEKSEMVP CP+I+IIRKD
Sbjct: 1 MEELDGEPTVTLIPGVNSKKNQMYFDWGPGEMLVCETSFNKKEKSEMVPSCPFIYIIRKD 60
Query: 267 IDVYCKILRKLFNESHGIFVGLQRIEEEFTGKSRKAQLVRVSKNYRSVIRACMEEMHQLA 446
+DVY +ILRKLFNESHGIF+GLQRI+EE TGKSRK+QLVRVSKNYRSVIRACMEEMHQ+A
Sbjct: 61 VDVYSQILRKLFNESHGIFLGLQRIDEELTGKSRKSQLVRVSKNYRSVIRACMEEMHQVA 120
Query: 447 IAAKDPASGGQFSSQISILSAMELIWNLCEILFIEVAPAGPXXXXXXDWVRLHVCEVDSL 626
IAAKDPA+G QFSSQ+SILSAMELIWNLCEILFIEVAPAGP DWVRLHVCEVDSL
Sbjct: 121 IAAKDPANGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL 180
Query: 627 SADVLGSENPSKHQDFWKLVTILVLQGRLDEARQMLSKEADASPTSAGMCRVLGDLMRTM 806
SADVLGSENPSKH FW LVTILVLQGRLDEARQMLSKEADASP SAG+CR++GDLMRTM
Sbjct: 181 SADVLGSENPSKHDSFWNLVTILVLQGRLDEARQMLSKEADASPASAGICRIMGDLMRTM 240
Query: 807 PVLSPGNTQTLTELELKWQHWHEECERHLQDGTFASSPHLESLCKIMLGDEAALLEQKEL 986
P+LSPGNTQTLTELELKWQHWHEECER+LQD TFA+SPHLESL KIMLGDEAALLEQKEL
Sbjct: 241 PILSPGNTQTLTELELKWQHWHEECERYLQDSTFATSPHLESLLKIMLGDEAALLEQKEL 300
Query: 987 LSNWYHFLVTRLLYSCPTVKPMDLHCYAQSSLDLFLGGESSAEPLDNILLAAFEFDIHQV 1166
LSNWYHFLVTRLLYS PTVKP+DLH YAQSSLDLFLGGESS EPLDNILLAAFEFDIHQV
Sbjct: 301 LSNWYHFLVTRLLYSNPTVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQV 360
Query: 1167 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG 1346
IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAH SLWQLG
Sbjct: 361 IKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLG 420
Query: 1347 VDYFDHCPELGRVSLELHIERIPLSTEQKALKVLRVCEQRQMTEQVRSICKILAMKAVRN 1526
VDYFD+CPELGRVSLELHIERIPL+TEQKALKVLR+CEQRQMTEQVRSICKILAMKAVRN
Sbjct: 421 VDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRN 480
Query: 1527 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 1634
NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF
Sbjct: 481 NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCF 516
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 1655 NLGPAMMLSDRLT 1693
NLGPAMMLSDRLT
Sbjct: 524 NLGPAMMLSDRLT 536
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,344,582
Number of extensions: 1945751
Number of successful extensions: 7539
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7514
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 456
Effective length of database: 14,737,052
Effective search space: 6720095712
Effective search space used: 6720095712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008422
(1693 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 313 2e-82
>Sscrofa_Chr12
|| Length = 63588571
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 219 tcagagatggtgcctggttgcccctatatccatattatccggaaagatatagatgtttat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6060248 tcagagatggtgcctggttgcccctatatccatattatccggaaagatatagatgtttat 6060189
Query: 279 tgtaaaatcctaagaaaactcttcaacgagtcccatggaatctttgtgggccttcagaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6060188 tgtaaaatcctaagaaaactcttcaacgagtcccatggaatctttgtgggccttcagaga 6060129
Query: 339 attgaagaagagtttactggaaaatccagaaaagctca 376
||||||||||||||||||||||||||||||||||||||
Sbjct: 6060128 attgaagaagagtttactggaaaatccagaaaagctca 6060091
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 1328 cagcctgtggcagctgggggtggattactttgaccactgccctgagctgggccgagtttc 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6040046 cagcctgtggcagctgggggtggattactttgaccactgccctgagctgggccgagtttc 6039987
Query: 1388 gttggagctgcatatcgagcggatcccgctgagcacggagcagaaagccctcaaggtgct 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6039986 gttggagctgcatatcgagcggatcccgctgagcacggagcagaaagccctcaaggtgct 6039927
Query: 1448 gcgggtttgcgagcagcggcagatgacggagcaag 1482
|||||||||||||||||||||||||||||||||||
Sbjct: 6039926 gcgggtttgcgagcagcggcagatgacggagcaag 6039892
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 683 ggtgaccatcctggtgctgcagggccggctggacgaggcccggcagatgctctccaagga 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048588 ggtgaccatcctggtgctgcagggccggctggacgaggcccggcagatgctctccaagga 6048529
Query: 743 agccgacgccagccccacctctgcaggcatgtgccgcgtcctgggggacctgatgaggac 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048528 agccgacgccagccccacctctgcaggcatgtgccgcgtcctgggggacctgatgaggac 6048469
Query: 803 aatgcccgttctcagc 818
||||||||||||||||
Sbjct: 6048468 aatgcccgttctcagc 6048453
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 940 agatcatgctgggagacgaagctgccctgttggagcaaaaggagcttctgagtaactggt 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048018 agatcatgctgggagacgaagctgccctgttggagcaaaaggagcttctgagtaactggt 6047959
Query: 1000 accatttcctagtgacccggctcctgtactcttgtcccacagtgaaacccatggacctgc 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047958 accatttcctagtgacccggctcctgtactcttgtcccacagtgaaacccatggacctgc 6047899
Query: 1060 actgctatgcccag 1073
||||||||||||||
Sbjct: 6047898 actgctatgcccag 6047885
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 557 cccagccggccccctcctccttcacctccttgactgggtccgattgcacgtgtgtgaggt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051410 cccagccggccccctcctccttcacctccttgactgggtccgattgcacgtgtgtgaggt 6051351
Query: 617 ggacagtttgtcggcagatgttctgggcagtgagaatccaagcaaacaccaggacttctg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051350 ggacagtttgtcggcagatgttctgggcagtgagaatccaagcaaacaccaggacttctg 6051291
Query: 677 gaagctggt 685
|||||||||
Sbjct: 6051290 gaagctggt 6051282
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1480 aagttcgcagcatttgtaagatcttagccatgaaagctgtccgcaacaatcgcctgggct 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6039128 aagttcgcagcatttgtaagatcttagccatgaaagctgtccgcaacaatcgcctgggct 6039069
Query: 1540 ccgccctctcttggagcattcgagccaaagatgctgcctttgccacgctggtgtcagaca 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6039068 ccgccctctcttggagcattcgagccaaagatgctgcctttgccacgctggtgtcagaca 6039009
Query: 1600 ggt 1602
|||
Sbjct: 6039008 ggt 6039006
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 819 cctggtaacactcagacgttgaccgagctggagctgaagtggcagcactggcacgaggag 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048349 cctggtaacactcagacgttgaccgagctggagctgaagtggcagcactggcacgaggag 6048290
Query: 879 tgcgagcggcacctccaagatggcacattcgcctccagtcctcacctcgagtctctttgc 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048289 tgcgagcggcacctccaagatggcacattcgcctccagtcctcacctcgagtctctttgc 6048230
Query: 939 aag 941
|||
Sbjct: 6048229 aag 6048227
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 3 tttctcgcagcgggttctgagcgggaggcccgagccgcgaacatttgcggccctgagaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6066161 tttctcgcagcgggttctgagcgggaggcccgagccgcgaacatttgcggccctgagaga 6066102
Query: 63 tccaggcggctgtggtgcggcgcaatggaggagctcgatggggagccgacagtcact 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6066101 tccaggcggctgtggtgcggcgcaatggaggagctcgatggggagccgacagtcact 6066045
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1071 cagtccagcctggacctgtttctgggaggtgagagcagcgcagaacccttggacaacatc 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047637 cagtccagcctggacctgtttctgggaggtgagagcagcgcagaacccttggacaacatc 6047578
Query: 1131 ttgttggcagccttcgagttcgacatccaccaagtgataaaggagtgcag 1180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047577 ttgttggcagccttcgagttcgacatccaccaagtgataaaggagtgcag 6047528
Score = 176 bits (89), Expect = 3e-41
Identities = 96/97 (98%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 1598 caggttcctcagggattactgtgagcgaggctgcttt-ccgacctcgatctcattgacaa 1656
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6038902 caggttcctcagggattactgtgagcgaggctgcttttccgacctcgatctcattgacaa 6038843
Query: 1657 cctggggccagccatgatgctcagtgatcgactgacg 1693
|||||||||||||||||||||||||||||||||||||
Sbjct: 6038842 cctggggccagccatgatgctcagtgatcgactgacg 6038806
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 120 ttgattccaggagtgaattcccagaagaagcaaatgtgttttgactggggtccaggggag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6064077 ttgattccaggagtgaattcccagaagaagcaaatgtgttttgactggggtccaggggag 6064018
Query: 180 atgctggtatgtgaaacctctttcaac 206
|||||||||||||||||||||||||||
Sbjct: 6064017 atgctggtatgtgaaacctctttcaac 6063991
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1179 agcattgccctcagcaactggtggtttgtggcccacctgacagacctgctggatcactgc 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6040552 agcattgccctcagcaactggtggtttgtggcccacctgacagacctgctggatcactgc 6040493
Query: 1239 aaactcctccagtctcacaacctcta 1264
||||||||||||||||||||||||||
Sbjct: 6040492 aaactcctccagtctcacaacctcta 6040467
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 377 attggttcgagtgagtaaaaactaccgatcagtcataagagcgtgcatggaggaaatgca 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057512 attggttcgagtgagtaaaaactaccgatcagtcataagagcgtgcatggaggaaatgca 6057453
Query: 437 ccagcttgcaa 447
|||||||||||
Sbjct: 6057452 ccagcttgcaa 6057442
Score = 135 bits (68), Expect = 9e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 490 agatctccattttgtcagccatggagctcatttggaacctttgtgagattctttttattg 549
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6054281 agatctccattttgtcagccatggagctaatttggaacctttgtgagattctttttattg 6054222
Query: 550 aagtggccccag 561
||||||||||||
Sbjct: 6054221 aagtggccccag 6054210
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1265 cttcgggtccaacatgagagagttcctcctgctggaatatgcctcaggcctgtttgccca 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6040316 cttcgggtccaacatgagagagttcctcctgctggaatatgcctcaggcctgtttgccca 6040257
Query: 1325 tcacag 1330
||||||
Sbjct: 6040256 tcacag 6040251
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 448 ttgctgctaaagatccagccagtggcggccagtttagcagccag 491
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055817 ttgctgctaaagatccagccagtggcggccagtttagcagccag 6055774
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,173,795
Number of extensions: 263
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 16
Length of query: 1693
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1671
Effective length of database: 2,808,408,574
Effective search space: 4692850727154
Effective search space used: 4692850727154
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)