Animal-Genome cDNA 20110601C-008423


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008423
         (1008 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029626.1| transmembrane protein 128 [Bos taurus].           313   2e-85

>ref|NP_001029626.1| transmembrane protein 128 [Bos taurus].
          Length = 165

 Score =  313 bits (801), Expect = 2e-85
 Identities = 148/165 (89%), Positives = 155/165 (93%)
 Frame = +2

Query: 35  MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 214
           MD LRAREQLRRRYLFP DAEVPL+ + YPRPETS+AVEKKEKPLPRLNIHSGFWILA I
Sbjct: 1   MDVLRAREQLRRRYLFPQDAEVPLEHEGYPRPETSTAVEKKEKPLPRLNIHSGFWILASI 60

Query: 215 VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 394
           VVTYYVDFF+TVKENFHTSSWFLFG ALLLVS+SIAFYCI YLEWYRGIEDYDIKYP LI
Sbjct: 61  VVTYYVDFFQTVKENFHTSSWFLFGSALLLVSVSIAFYCIVYLEWYRGIEDYDIKYPALI 120

Query: 395 PVTTATFIVAGICFNAALWHVWSFFTPLLLFTQFMGVVMLISLLG 529
           P+TTATFIVAGICFN ALWHVWSFFTP+LLFTQFMGVVML SLLG
Sbjct: 121 PITTATFIVAGICFNVALWHVWSFFTPVLLFTQFMGVVMLTSLLG 165


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,539,868
Number of extensions: 910473
Number of successful extensions: 3228
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3222
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008423
         (1008 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536241.2| PREDICTED: hypothetical protein XP_536241 [Cani...   300   1e-81

>ref|XP_536241.2| PREDICTED: hypothetical protein XP_536241 [Canis familiaris].
          Length = 165

 Score =  300 bits (769), Expect = 1e-81
 Identities = 143/165 (86%), Positives = 149/165 (90%)
 Frame = +2

Query: 35  MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 214
           MDA RAREQLRRRYLFPPD E P DR+ Y RPE S+AVEKKEKPLPRLNIHSGFWILA I
Sbjct: 1   MDASRAREQLRRRYLFPPDTEAPQDREGYARPEASTAVEKKEKPLPRLNIHSGFWILASI 60

Query: 215 VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 394
           VVTYYVDFFKT+KENFHTSSWF+ GGALLL+SLSIA YCI YLEW  GIEDYD+KYPTLI
Sbjct: 61  VVTYYVDFFKTIKENFHTSSWFVVGGALLLISLSIACYCILYLEWCCGIEDYDVKYPTLI 120

Query: 395 PVTTATFIVAGICFNAALWHVWSFFTPLLLFTQFMGVVMLISLLG 529
           PVTTATFI AGICFN ALWHVWSF TPLLLFTQFMGVVMLISLLG
Sbjct: 121 PVTTATFIAAGICFNVALWHVWSFLTPLLLFTQFMGVVMLISLLG 165


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,143,220
Number of extensions: 935198
Number of successful extensions: 3126
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3124
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008423
         (1008 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128902.1| PREDICTED: transmembrane protein 128-like is...   344   4e-95
Alignment   gi|XP_003128903.1| PREDICTED: transmembrane protein 128-like is...   275   2e-74

>ref|XP_003128902.1| PREDICTED: transmembrane protein 128-like isoform 1 [Sus scrofa].
          Length = 165

 Score =  344 bits (883), Expect = 4e-95
 Identities = 165/165 (100%), Positives = 165/165 (100%)
 Frame = +2

Query: 35  MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 214
           MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI
Sbjct: 1   MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 60

Query: 215 VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 394
           VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI
Sbjct: 61  VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 120

Query: 395 PVTTATFIVAGICFNAALWHVWSFFTPLLLFTQFMGVVMLISLLG 529
           PVTTATFIVAGICFNAALWHVWSFFTPLLLFTQFMGVVMLISLLG
Sbjct: 121 PVTTATFIVAGICFNAALWHVWSFFTPLLLFTQFMGVVMLISLLG 165


>ref|XP_003128903.1| PREDICTED: transmembrane protein 128-like isoform 2 [Sus scrofa].
          Length = 139

 Score =  275 bits (704), Expect = 2e-74
 Identities = 132/132 (100%), Positives = 132/132 (100%)
 Frame = +2

Query: 35  MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 214
           MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI
Sbjct: 1   MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 60

Query: 215 VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 394
           VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI
Sbjct: 61  VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 120

Query: 395 PVTTATFIVAGI 430
           PVTTATFIVAGI
Sbjct: 121 PVTTATFIVAGI 132


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,476,078
Number of extensions: 581681
Number of successful extensions: 2105
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2101
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008423
         (1008 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079756.2| transmembrane protein 128 [Mus musculus].            284   7e-77

>ref|NP_079756.2| transmembrane protein 128 [Mus musculus].
          Length = 163

 Score =  284 bits (727), Expect = 7e-77
 Identities = 137/165 (83%), Positives = 149/165 (90%)
 Frame = +2

Query: 35  MDALRAREQLRRRYLFPPDAEVPLDRDNYPRPETSSAVEKKEKPLPRLNIHSGFWILACI 214
           MDA  AREQLRRRYLFP  +EV LD ++  +PET +AVEKKE+PLPRLNIHSGFWILA I
Sbjct: 1   MDAPWAREQLRRRYLFP--SEVELDCEDEAKPETPTAVEKKERPLPRLNIHSGFWILASI 58

Query: 215 VVTYYVDFFKTVKENFHTSSWFLFGGALLLVSLSIAFYCIFYLEWYRGIEDYDIKYPTLI 394
           VVTYYVDFFKT KENFHT+SWFLFGGALL VSLSIAFYCI YLEWYRGIE+YD+KYPTL+
Sbjct: 59  VVTYYVDFFKTFKENFHTNSWFLFGGALLFVSLSIAFYCIVYLEWYRGIEEYDVKYPTLV 118

Query: 395 PVTTATFIVAGICFNAALWHVWSFFTPLLLFTQFMGVVMLISLLG 529
           P+TTATFI AGICFN ALW+VWSFFTPLLLFTQFMGVVM ISLLG
Sbjct: 119 PITTATFIAAGICFNLALWNVWSFFTPLLLFTQFMGVVMFISLLG 163


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,119,061
Number of extensions: 795575
Number of successful extensions: 2631
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2628
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008423
         (1008 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_116316.1| transmembrane protein 128 [Homo sapiens].            246   2e-65

>ref|NP_116316.1| transmembrane protein 128 [Homo sapiens].
          Length = 141

 Score =  246 bits (629), Expect = 2e-65
 Identities = 116/135 (85%), Positives = 124/135 (91%)
 Frame = +2

Query: 125 RPETSSAVEKKEKPLPRLNIHSGFWILACIVVTYYVDFFKTVKENFHTSSWFLFGGALLL 304
           + ETS+AVEKKEKPLPRLNIHSGFWILA IVVTYYVDFFKT+KENFHTSSWFL G ALLL
Sbjct: 7   KTETSTAVEKKEKPLPRLNIHSGFWILASIVVTYYVDFFKTLKENFHTSSWFLCGSALLL 66

Query: 305 VSLSIAFYCIFYLEWYRGIEDYDIKYPTLIPVTTATFIVAGICFNAALWHVWSFFTPLLL 484
           VSLSIAFYCI YLEWY GI +YD+KYP LIP+TTA+FI AGICFN ALWHVWSFFTPLLL
Sbjct: 67  VSLSIAFYCIVYLEWYCGIGEYDVKYPALIPITTASFIAAGICFNIALWHVWSFFTPLLL 126

Query: 485 FTQFMGVVMLISLLG 529
           FTQFMGVVM I+LLG
Sbjct: 127 FTQFMGVVMFITLLG 141


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,580,797
Number of extensions: 928785
Number of successful extensions: 2987
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2985
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008423
         (1008 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         850   0.0  

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  850 bits (429), Expect = 0.0
 Identities = 457/469 (97%)
 Strand = Plus / Minus

                                                                           
Query: 540     aggactaagggcatatcagtttaaagtgaatggctactgtcctgcgagctgaaagcacca 599
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752107 aggactaagggcatatcagtttaaagtgaatggctactgtcctgcgagctgaaagcacca 5752048

                                                                           
Query: 600     cacagaatggaaacgctacagtgtgtttttgcgtctatgaaatgagtgggttccttggnn 659
               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 5752047 cacagaatggaaaccctacagtgtgtttttgcgtctatgaaatgagtgggttccttggaa 5751988

                                                                           
Query: 660     nnnnntggaacttttatagctcggtggttgaaatcagaataaattatatttcatttgcct 719
                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751987 aaaaatggaacttttatagctcggtggttgaaatcagaataaattatatttcatttgcct 5751928

                                                                           
Query: 720     gttgctgaactcaagtgattattgaaattttcagattcaaaatagaagacagaaataact 779
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751927 gttgctgaactcaagtgattattgaaattttcagattcaaaatagaagacagaaataact 5751868

                                                                           
Query: 780     aatttacagtgttaatgtttggatcattggagaagctattggtgtaagaatgtaaagaaa 839
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751867 aatttacagtgttaatgtttggatcattggagaagctattggtgtaagaatgtaaagaaa 5751808

                                                                           
Query: 840     ttttcattatggttgcatagtgtctgcccagtattgtagagaagttgttcactctgtcat 899
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751807 ttttcattatggttgcatagtgtctgcccagtattgtagagaagttgttcactctgtcat 5751748

                                                                           
Query: 900     ttacgagatagcagttccttgtgtaagatgaccaggcgtgtatatagaggggtgatggtg 959
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751747 ttacgagatagcagttccttgtgtaagatgaccaggcgtgtatatagaggggtgatggtg 5751688

                                                                
Query: 960     tcatgtgccttttacccagcctcagncatgacgatataatttcattttt 1008
               |||||||||||| ||| ||||||||  ||||||||||||||||||||||
Sbjct: 5751687 tcatgtgcctttaaccaagcctcagcaatgacgatataatttcattttt 5751639



 Score =  319 bits (161), Expect = 2e-84
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                           
Query: 272     agctggttcctctttggcggtgccttgttacttgttagcttatcaattgcattctactgc 331
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755846 agctggttcctctttggcggtgccttgttacttgttagcttatcaattgcattctactgc 5755787

                                                                           
Query: 332     atattctatctggagtggtatcgaggaatcgaagattatgatatcaaatacccaacgttg 391
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755786 atattctatctggagtggtatcgaggaatcgaagattatgatatcaaatacccaacgttg 5755727

                                                        
Query: 392     atacctgtgacaactgctacttttattgtagcaggaatttg 432
               |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755726 atacctgtgacaactgctacttttattgtagcaggaatttg 5755686



 Score =  283 bits (143), Expect = 9e-74
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                           
Query: 131     gaaacctcttcagctgttgagaaaaaggagaaacctcttccaagactcaatatccattct 190
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5759443 gaaacctcttcagctgttgagaaaaaggagaaacctcttccaagactcaatatccattct 5759384

                                                                           
Query: 191     ggattctggattttggcatgcattgttgtgacctattatgttgatttctttaaaaccgtt 250
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5759383 ggattctggattttggcatgcattgttgtgacctattatgttgatttctttaaaaccgtt 5759324

                                      
Query: 251     aaagaaaactttcacaccagtag 273
               |||||||||||||||||||||||
Sbjct: 5759323 aaagaaaactttcacaccagtag 5759301



 Score =  260 bits (131), Expect = 1e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1       cgccacttccgccaagtttctgggcggtgccaagatggacgccttacgagctcgggagca 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5761774 cgccacttccgccaagtttctgggcggtgccaagatggacgccttacgagctcgggagca 5761715

                                                                           
Query: 61      gctccggcggcgatacctctttcccccggacgcggaggttccgctggatcgcgacaacta 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5761714 gctccggcggcgatacctctttcccccggacgcggaggttccgctggatcgcgacaacta 5761655

                          
Query: 121     ccccaggccgg 131
               |||||||||||
Sbjct: 5761654 ccccaggccgg 5761644



 Score =  220 bits (111), Expect = 1e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                           
Query: 432     gcttcaatgctgccctctggcacgtgtggtcgtttttcaccccactgctgctctttaccc 491
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5753944 gcttcaatgctgccctctggcacgtgtggtcgtttttcaccccactgctgctctttaccc 5753885

                                                                  
Query: 492     agtttatgggggttgtgatgctgatctcactcctcgggtgatcgctgaagg 542
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5753884 agtttatgggggttgtgatgctgatctcactcctcgggtgatcgctgaagg 5753834


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,026,340
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 5
Length of query: 1008
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 987
Effective length of database: 2,808,413,156
Effective search space: 2771903784972
Effective search space used: 2771903784972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)