Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008424
(916 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033628.1| proteasome subunit beta type-1 precursor [Bo... 464 e-131
Alignment gi|NP_001029768.1| proteasome subunit beta type-3 [Bos taurus]. 84 2e-16
Alignment gi|NP_001015615.1| proteasome subunit beta type-2 [Bos taurus]. 62 7e-10
Alignment gi|NP_001035570.1| proteasome subunit beta type-8 precursor [Bo... 54 1e-07
Alignment gi|NP_001032701.1| proteasome subunit beta type-5 precursor [Bo... 54 2e-07
Alignment gi|NP_001029212.1| proteasome subunit beta type-10 precursor [B... 51 1e-06
Alignment gi|NP_001033616.1| proteasome subunit beta type-7 precursor [Bo... 50 3e-06
Alignment gi|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus]. 49 6e-06
Alignment gi|NP_001029541.1| proteasome subunit beta type-6 precursor [Bo... 49 6e-06
>ref|NP_001033628.1| proteasome subunit beta type-1 precursor [Bos taurus].
Length = 241
Score = 464 bits (1194), Expect = e-131
Identities = 231/241 (95%), Positives = 236/241 (97%)
Frame = +3
Query: 66 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 245
MLSSVAAYS GRDLAM+PHS+ GP QLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG
Sbjct: 1 MLSSVAAYSGAGRDLAMEPHSSVGPLQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 60
Query: 246 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 425
FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML
Sbjct: 61 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 120
Query: 426 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 605
STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
Sbjct: 121 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 180
Query: 606 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 785
VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDAL++CIVTKEG+R ETVPLRK
Sbjct: 181 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRK 240
Query: 786 D 788
D
Sbjct: 241 D 241
>ref|NP_001029768.1| proteasome subunit beta type-3 [Bos taurus].
Length = 205
Score = 84.0 bits (206), Expect = 2e-16
Identities = 53/210 (25%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ G++ +A+D R + T D K + + D+ IG +G D T+
Sbjct: 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVA 64
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ RL +Y+ + + + +M++ +LY +RF PYY +I GLD + K + S
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ + + + ++ ++ + EH+ ++ +AM ++A
Sbjct: 125 DLIGCPMVTDDFVVSGTCTEQMYGMCESL--WEPNMDPEHLFETISQAM-------LNAV 175
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + I+ K+ + T+ R D
Sbjct: 176 DRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
>ref|NP_001015615.1| proteasome subunit beta type-2 [Bos taurus].
Length = 201
Score = 62.0 bits (149), Expect = 7e-10
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 3/197 (1%)
Frame = +3
Query: 183 VLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 362
++ I G D+ +VASD + D K +K+++K ++ C G GD + + I+
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 363 LKMYKHSNNKAMTTGAIAAMLSTIL--YSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGS 536
+++YK N ++ A A L Y R PY+V ++ G DE A+Y D + +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123
Query: 537 YQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP-LSLDRAMRLVKDVFISAAERDVY 713
+ F A G + + +LD + P +S ++A+ L++ +R +
Sbjct: 124 LAKAPFAAHGYGAFLTLSILDRY----------YTPTISREKAVELLRKCLEELQKRFIL 173
Query: 714 TGDALRICIVTKEGVRE 764
+ I+ + G+ +
Sbjct: 174 NLPTFSVRIIDRNGIHD 190
>ref|NP_001035570.1| proteasome subunit beta type-8 precursor [Bos taurus].
Length = 276
Score = 54.3 bits (129), Expect = 1e-07
Identities = 45/195 (23%), Positives = 81/195 (41%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA + IVA D+R S G I T K ++ + SG DC ++
Sbjct: 71 HGTTTLAFKFQHGVIVAVDSRASAGNYIDTLKVNKVIEINPYLLGTMSGCAADCQYWERL 130
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ ++Y N + ++ A + +LS ++ R + ++I G D++G G Y D
Sbjct: 131 LAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVNDSG 190
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
+ F G N + M + LS++ A L + + A RD
Sbjct: 191 TRLSGNMFSTGSG----------NSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDS 240
Query: 711 YTGDALRICIVTKEG 755
Y+G + + + ++G
Sbjct: 241 YSGGVVNMYHMKEDG 255
>ref|NP_001032701.1| proteasome subunit beta type-5 precursor [Bos taurus].
Length = 263
Score = 53.5 bits (127), Expect = 2e-07
Identities = 47/220 (21%), Positives = 95/220 (43%)
Frame = +3
Query: 96 PGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPK 275
P L++ S P + R +G T LA IVA+D+R + G I ++ K
Sbjct: 35 PSDGLSLAAPSWGVPEEPRIE--ILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKK 92
Query: 276 CYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF 455
++ + +G DC +++ + ++Y+ N + ++ A + +L+ ++Y +
Sbjct: 93 VIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGM 152
Query: 456 PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 635
+ +I G D+ G G +Y D G+ + + GS S ++D +
Sbjct: 153 GLSMGTMICGWDKRGPG-LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSY------- 204
Query: 636 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 755
L ++ A L + A RD Y+G ++ + V ++G
Sbjct: 205 --DLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDG 242
>ref|NP_001029212.1| proteasome subunit beta type-10 precursor [Bos taurus].
Length = 273
Score = 51.2 bits (121), Expect = 1e-06
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 2/203 (0%)
Frame = +3
Query: 159 PYAFNGGTVLA-IAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 335
P+A GT +A + +D I+ +DTR + + + K + + K +G D
Sbjct: 33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAE 92
Query: 336 TLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYN-IIGGLDEEGKGAV 512
T++ + ++++ S + + ML L+ R+ Y + I+GG+D G +
Sbjct: 93 MTTRMAASNMELHALSTGRECRVATVTRMLRQTLF--RYQGYVGASLIVGGVDFTGP-QL 149
Query: 513 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 692
YS P GSY R F A GS +L+++ ++L+ A L+ + +
Sbjct: 150 YSVHPHGSYSRLPFTALGSGQDAAIAVLEDRF---------QPNMTLEAAQELLVEAITA 200
Query: 693 AAERDVYTGDALRICIVTKEGVR 761
D+ +G + C++T G +
Sbjct: 201 GILGDLGSGGNVDACVITAAGAK 223
>ref|NP_001033616.1| proteasome subunit beta type-7 precursor [Bos taurus].
Length = 277
Score = 50.1 bits (118), Expect = 3e-06
Identities = 43/208 (20%), Positives = 93/208 (44%), Gaps = 4/208 (1%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T+ + +D ++ +DTR +EG + ++ K + ++ +G D T++I
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYY-VYNIIGGLDEEGKGAVYSFDPV 530
+ L+++ S + ML +L+ R+ Y ++GG+D G +YS P
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLF--RYQGYIGAALVLGGVDVTGP-HLYSIYPH 159
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
GS + + GS S + +++ + + A +LV + + D+
Sbjct: 160 GSTDKLPYVTMGSGSLAAMAVFEDKF---------RPDMEEEEAKKLVSEAIAAGIFNDL 210
Query: 711 YTGDALRICIVTK---EGVREETVPLRK 785
+G + +C+++K + +R +VP +K
Sbjct: 211 GSGSNIDLCVISKSKLDFLRPYSVPNKK 238
>ref|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus].
Length = 289
Score = 48.9 bits (115), Expect = 6e-06
Identities = 47/199 (23%), Positives = 77/199 (38%)
Frame = +3
Query: 159 PYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 338
P +G T LA I A+DTR S G + S K + + SG DC+T
Sbjct: 44 PRLAHGTTTLAFRFRHGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTSGTSADCVT 103
Query: 339 LTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 518
++++ L++ + + A +LS ++ R V + G D G Y
Sbjct: 104 WYRVLQRELRLRALREGQLPSVAGAAKLLSVMMSRYRGLDLCVATALCGWDRSGPALFYV 163
Query: 519 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
+ Q + F GS S +LD G++ +S A L + A
Sbjct: 164 YSDGTCLQGNIFSV-GSGSPYAYGVLDR--GYR-------YDMSTQEAYALARCAVAHAT 213
Query: 699 ERDVYTGDALRICIVTKEG 755
RD Y+G ++ + V + G
Sbjct: 214 RRDAYSGGSVDLFHVRESG 232
>ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus].
Length = 239
Score = 48.9 bits (115), Expect = 6e-06
Identities = 42/200 (21%), Positives = 79/200 (39%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T++A+ + ++ +D+R + G I R + K + D+ SG D + +
Sbjct: 34 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAV 93
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 533
+L + N+ A++ + Y R II G D + G VYS G
Sbjct: 94 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGG 152
Query: 534 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVY 713
R F GGS S+ + +D ++ + ++ + A ERD
Sbjct: 153 MMVRQPFAIGGSGSSYIYGYVD---------ATYREGMTKEECLQFTANALALAMERDGS 203
Query: 714 TGDALRICIVTKEGVREETV 773
+G +R+ + + GV + +
Sbjct: 204 SGGVIRLAAIAEPGVERQVL 223
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,622,728
Number of extensions: 936604
Number of successful extensions: 3091
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3088
Number of HSP's successfully gapped: 9
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008424
(916 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532275.2| PREDICTED: similar to Proteasome subunit beta t... 457 e-129
Alignment gi|XP_537658.1| PREDICTED: similar to Proteasome subunit beta t... 85 8e-17
Alignment gi|XP_532224.1| PREDICTED: similar to Proteasome subunit beta t... 75 7e-14
Alignment gi|XP_532564.2| PREDICTED: similar to Proteasome subunit beta t... 63 4e-10
Alignment gi|XP_867775.1| PREDICTED: similar to Proteasome subunit beta t... 60 4e-09
Alignment gi|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit... 56 5e-08
Alignment gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca... 54 3e-07
Alignment gi|XP_849241.1| PREDICTED: similar to Proteasome subunit beta t... 52 6e-07
>ref|XP_532275.2| PREDICTED: similar to Proteasome subunit beta type 1 (Proteasome
component C5) (Macropain subunit C5) (Multicatalytic
endopeptidase complex subunit C5) (Proteasome gamma
chain) [Canis familiaris].
Length = 241
Score = 457 bits (1176), Expect = e-129
Identities = 229/241 (95%), Positives = 232/241 (96%)
Frame = +3
Query: 66 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 245
MLS+ A PGRDLAM+P AAGP QLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG
Sbjct: 1 MLSTAARGWGPGRDLAMEPDGAAGPQQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 60
Query: 246 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 425
FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK MTTGAIAAML
Sbjct: 61 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKTMTTGAIAAML 120
Query: 426 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 605
STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
Sbjct: 121 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 180
Query: 606 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 785
VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG+REETVPLRK
Sbjct: 181 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRK 240
Query: 786 D 788
D
Sbjct: 241 D 241
>ref|XP_537658.1| PREDICTED: similar to Proteasome subunit beta type 3 (Proteasome
theta chain) (Proteasome chain 13) (Proteasome component
C10-II) [Canis familiaris].
Length = 205
Score = 85.1 bits (209), Expect = 8e-17
Identities = 54/210 (25%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ G++ +A+D R + T D K + + D+ IG +G D T+
Sbjct: 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVA 64
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ RL +Y+ + + + +M++ +LY +RF PYY +I GLD + K + S
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ S + + ++ ++ + EH+ ++ +AM ++A
Sbjct: 125 DLIGCPMVTDDFVVSGTCSEQMYGMCESL--WEPNMDPEHLFETISQAM-------LNAV 175
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + I+ K+ + T+ R D
Sbjct: 176 DRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
>ref|XP_532224.1| PREDICTED: similar to Proteasome subunit beta type 3 (Proteasome
theta chain) (Proteasome chain 13) (Proteasome component
C10-II) isoform 1 [Canis familiaris].
Length = 204
Score = 75.5 bits (184), Expect = 7e-14
Identities = 51/210 (24%), Positives = 105/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ G++ +A+D R + T D + + + D+ IG +G D +
Sbjct: 5 SYNGGAVMAMKGKNCMAIAADRRFGIQAQMVTTDF-QIFPMGDRLYIGLAGLATDVQAVA 63
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ RL +Y+ + + + +M++ +LY +RF PYY +I GLD + K + S
Sbjct: 64 QCLKFRLNLYELKEGQQIKPYTLMSMVANLLYEKRFGPYYTEPVITGLDPKTFKPFICSL 123
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ S + + ++ ++ + EH+ ++ +AM ++A
Sbjct: 124 DLIGCPMVTDDFVVSGTCSEQMYGMCESL--WEPNMDPEHLFENISQAM-------LNAV 174
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + I+ K+ + T+ D
Sbjct: 175 DRDAVSGMGVIVHIIEKDKITTRTLKAHMD 204
>ref|XP_532564.2| PREDICTED: similar to Proteasome subunit beta type 2 (Proteasome
component C7-I) (Macropain subunit C7-I) (Multicatalytic
endopeptidase complex subunit C7-I) [Canis familiaris].
Length = 246
Score = 62.8 bits (151), Expect = 4e-10
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 5/199 (2%)
Frame = +3
Query: 183 VLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 362
++ I G D+ +VASD + D K +K+++K ++ C G GD + + I+
Sbjct: 49 LIGIQGPDYVLVASDQVAASSIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 108
Query: 363 LKMYKHSNNKAMTTGAIAAM----LSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+++YK N ++ A A L+ L SR PY+V ++ G DE A+Y D +
Sbjct: 109 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDYL 166
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP-LSLDRAMRLVKDVFISAAERD 707
+ + F A G + + +LD + P +S +RA+ L++ +R
Sbjct: 167 AALAKAPFAAHGYGAFLTLSILDRY----------YTPTISRERAVELLRKCLEELQKRF 216
Query: 708 VYTGDALRICIVTKEGVRE 764
+ + I+ K G+ +
Sbjct: 217 ILNLPTFSVRIIDKNGIHD 235
>ref|XP_867775.1| PREDICTED: similar to Proteasome subunit beta type 3 (Proteasome
theta chain) (Proteasome chain 13) (Proteasome component
C10-II) isoform 2 [Canis familiaris].
Length = 179
Score = 59.7 bits (143), Expect = 4e-09
Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Frame = +3
Query: 279 YKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFP 458
+ + D+ IG +G D + + ++ RL +Y+ + + + +M++ +LY +RF P
Sbjct: 17 FPMGDRLYIGLAGLATDVQAVAQCLKFRLNLYELKEGQQIKPYTLMSMVANLLYEKRFGP 76
Query: 459 YYVYNIIGGLDEEG-KGAVYSFDPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 632
YY +I GLD + K + S D +G D F G+ S + + ++ ++ +
Sbjct: 77 YYTEPVITGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESL--WEPNMDP 134
Query: 633 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRKD 788
EH+ ++ +AM ++A +RD +G + + I+ K+ + T+ D
Sbjct: 135 EHLFENISQAM-------LNAVDRDAVSGMGVIVHIIEKDKITTRTLKAHMD 179
>ref|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 263
Score = 55.8 bits (133), Expect = 5e-08
Identities = 43/195 (22%), Positives = 89/195 (45%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA + IVA+D+R + G I ++ K ++ + +G DC ++
Sbjct: 58 HGTTTLAFKFQHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERL 117
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ + ++Y+ N + ++ A + +L+ ++Y + + +I G D+ G G +Y D
Sbjct: 118 LARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPG-LYYVDSE 176
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
G+ + + GS S ++D + L +++A L + A RD
Sbjct: 177 GNRISGATFSVGSGSVYAYGVMDRGYSY---------DLEVEQAYDLARRAIYQATYRDA 227
Query: 711 YTGDALRICIVTKEG 755
Y+G A+ + V ++G
Sbjct: 228 YSGGAVNLYHVREDG 242
>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
Length = 276
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/195 (23%), Positives = 88/195 (45%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA + IVA D+R + G I + K ++ + SG DC ++
Sbjct: 71 HGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERL 130
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ ++Y N + ++ A + +LS ++Y R + ++I G D++G G +Y D
Sbjct: 131 LAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPG-LYYVDQN 189
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
G+ + + GS S ++D+ G++ LS + A L + A RD
Sbjct: 190 GTRLSGNMFSTGSGSTYAYGVMDS--GYQ-------PSLSPEEAYELGRRAITYATHRDS 240
Query: 711 YTGDALRICIVTKEG 755
Y+G + + + ++G
Sbjct: 241 YSGGIINMYHMKEDG 255
>ref|XP_849241.1| PREDICTED: similar to Proteasome subunit beta type 6 precursor
(Proteasome delta chain) (Macropain delta chain)
(Multicatalytic endopeptidase complex delta chain)
(Proteasome subunit Y) [Canis familiaris].
Length = 239
Score = 52.4 bits (124), Expect = 6e-07
Identities = 44/200 (22%), Positives = 80/200 (40%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T++A+ E ++ +D+R + G I R + K + D+ SG D + +
Sbjct: 34 GTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAV 93
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 533
+L + N+ A++ + Y R II G D + G VYS G
Sbjct: 94 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGG 152
Query: 534 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVY 713
R SF GGS S+ + +D ++ + ++ + A ERD
Sbjct: 153 MMVRQSFAIGGSGSSYIYGYVD---------ATYREGMTKEECLQFTANALALAMERDGS 203
Query: 714 TGDALRICIVTKEGVREETV 773
+G +R+ + + GV + +
Sbjct: 204 SGGVIRLAAIAESGVERQVL 223
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,847,672
Number of extensions: 940650
Number of successful extensions: 3107
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 8
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008424
(916 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361464.1| PREDICTED: proteasome subunit beta type-1-li... 481 e-136
Alignment gi|XP_003361463.1| PREDICTED: proteasome subunit beta type-1-li... 481 e-136
Alignment gi|NP_001138374.1| proteasome subunit beta type-3 [Sus scrofa]. 84 8e-17
Alignment gi|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa]. 57 1e-08
Alignment gi|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [S... 57 2e-08
Alignment gi|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [S... 55 5e-08
Alignment gi|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-l... 50 2e-06
Alignment gi|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa]. 50 2e-06
Alignment gi|NP_001090945.1| proteasome subunit beta type-7 precursor [Su... 49 3e-06
Alignment gi|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa]. 48 7e-06
>ref|XP_003361464.1| PREDICTED: proteasome subunit beta type-1-like isoform 2 [Sus
scrofa].
Length = 241
Score = 481 bits (1238), Expect = e-136
Identities = 241/241 (100%), Positives = 241/241 (100%)
Frame = +3
Query: 66 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 245
MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG
Sbjct: 1 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 60
Query: 246 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 425
FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML
Sbjct: 61 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 120
Query: 426 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 605
STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
Sbjct: 121 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 180
Query: 606 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 785
VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK
Sbjct: 181 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 240
Query: 786 D 788
D
Sbjct: 241 D 241
>ref|XP_003361463.1| PREDICTED: proteasome subunit beta type-1-like isoform 1 [Sus
scrofa].
Length = 241
Score = 481 bits (1238), Expect = e-136
Identities = 241/241 (100%), Positives = 241/241 (100%)
Frame = +3
Query: 66 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 245
MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG
Sbjct: 1 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 60
Query: 246 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 425
FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML
Sbjct: 61 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 120
Query: 426 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 605
STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
Sbjct: 121 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 180
Query: 606 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 785
VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK
Sbjct: 181 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 240
Query: 786 D 788
D
Sbjct: 241 D 241
>ref|NP_001138374.1| proteasome subunit beta type-3 [Sus scrofa].
Length = 205
Score = 84.3 bits (207), Expect = 8e-17
Identities = 53/210 (25%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ G++ +A+D R + T D K + + D+ IG +G D T+
Sbjct: 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVA 64
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ RL +Y+ + + + +M++ +LY RRF PYY +I GLD + K + S
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYERRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ + + + ++ ++ + EH+ ++ +AM ++A
Sbjct: 125 DLIGCPMVTDDFVVSGTCTEQMYGMCESL--WEPDMDPEHLFETISQAM-------LNAV 175
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + ++ K+ + T+ R D
Sbjct: 176 DRDAVSGMGVIVHVIEKDKITTRTLKARMD 205
>ref|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].
Length = 260
Score = 57.4 bits (137), Expect = 1e-08
Identities = 47/195 (24%), Positives = 86/195 (44%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA + IVA D+R S G I T K ++ + SG DC ++
Sbjct: 55 HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYWERL 114
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ ++Y N + ++ A + +LS ++Y R + ++I G D++G G +Y D
Sbjct: 115 LAKECRLYYLRNGERISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 173
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
G+ + + GS N + M + LS++ A L + + A RD
Sbjct: 174 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 224
Query: 711 YTGDALRICIVTKEG 755
Y+G + + + ++G
Sbjct: 225 YSGGVVNMYHMKEDG 239
>ref|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [Sus scrofa].
Length = 276
Score = 56.6 bits (135), Expect = 2e-08
Identities = 47/195 (24%), Positives = 85/195 (43%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA + IVA D+R S G I T K ++ + SG DC ++
Sbjct: 71 HGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGSAADCQYWERL 130
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ ++Y N ++ A + +LS ++Y R + ++I G D++G G +Y D
Sbjct: 131 LAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPG-LYYVDEN 189
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
G+ + + GS N + M + LS++ A L + + A RD
Sbjct: 190 GTRLSGNMFSTGSG---------NTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDS 240
Query: 711 YTGDALRICIVTKEG 755
Y+G + + + ++G
Sbjct: 241 YSGGVVNMYHMKEDG 255
>ref|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [Sus scrofa].
Length = 275
Score = 55.1 bits (131), Expect = 5e-08
Identities = 48/220 (21%), Positives = 97/220 (44%)
Frame = +3
Query: 96 PGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPK 275
PG L++ S P + R +G T LA IVA+D+R + G I ++ K
Sbjct: 47 PGDGLSLVAPSWGVPEEPRIE--MLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKK 104
Query: 276 CYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF 455
++ + +G DC +++ + ++Y+ N + ++ A + +L+ ++Y +
Sbjct: 105 VIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGM 164
Query: 456 PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 635
+ +I G D+ G G +Y D G+ + + GS S ++D +
Sbjct: 165 GLSMGTMICGWDKRGPG-LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSY------- 216
Query: 636 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 755
L +++A L + A RD Y+G ++ + V ++G
Sbjct: 217 --DLEVEQAYDLARRAIYQATYRDAYSGGSVNLYHVREDG 254
>ref|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-like [Sus scrofa].
Length = 291
Score = 50.1 bits (118), Expect = 2e-06
Identities = 49/199 (24%), Positives = 76/199 (38%)
Frame = +3
Query: 159 PYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 338
P +G T LA D I A+DTR S G + S K + + SG DC T
Sbjct: 44 PRLAHGTTTLAFRFRDGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTSGTSADCTT 103
Query: 339 LTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 518
+++ L++ + + + A +LS ++ R V + G D G Y
Sbjct: 104 WYRVLRRELRLRELREGQLPSVAGAAKLLSGMMSRYRGLDLCVATALCGWDRSGPALFYV 163
Query: 519 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
+ Q D F GS S +LD G++ +S A L A
Sbjct: 164 YSDGTLLQGDIFSV-GSGSPYAYGVLDR--GYR-------YDMSTQEAYALACRAVAHAT 213
Query: 699 ERDVYTGDALRICIVTKEG 755
RD Y+G ++ + V + G
Sbjct: 214 HRDAYSGGSVDLFHVRESG 232
>ref|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].
Length = 241
Score = 49.7 bits (117), Expect = 2e-06
Identities = 41/200 (20%), Positives = 80/200 (40%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T++A+ + ++ +D+R + G I R + K + D+ SG D + +
Sbjct: 36 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAV 95
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 533
+L + N+ A++ + Y R I+ G D + G VYS G
Sbjct: 96 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIVAGWDPQEGGQVYSVPMGG 154
Query: 534 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVY 713
R +F GGS S+ + +D ++ + ++ + A ERD
Sbjct: 155 MMVRQAFAIGGSGSSYIYGYVD---------ATYREGMTKEECLQFTANALALAMERDGS 205
Query: 714 TGDALRICIVTKEGVREETV 773
+G +R+ + + GV + +
Sbjct: 206 SGGVIRLAAIAESGVERQVL 225
>ref|NP_001090945.1| proteasome subunit beta type-7 precursor [Sus scrofa].
Length = 277
Score = 49.3 bits (116), Expect = 3e-06
Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 4/208 (1%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T+ + +D ++ +DTR +EG + ++ K + ++ +G D T++I
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYY-VYNIIGGLDEEGKGAVYSFDPV 530
+ L+++ S + ML +L+ R+ Y ++GG+D G +YS P
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLF--RYQGYIGAALVLGGVDVTGP-HLYSIYPH 159
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
GS + + GS S + +++ + + A +LV + + D+
Sbjct: 160 GSTDKLPYVTMGSGSLAAMAVFEDKF---------RPEMEEEEAKQLVSEAIAAGIFNDL 210
Query: 711 YTGDALRICIVTKEGV---REETVPLRK 785
+G + +C+++K + R +VP +K
Sbjct: 211 GSGSNIDLCVISKSKLDFFRPYSVPNKK 238
>ref|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].
Length = 273
Score = 48.1 bits (113), Expect = 7e-06
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 2/203 (0%)
Frame = +3
Query: 159 PYAFNGGTVLA-IAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 335
P+A GT +A + +D I+ +DTR + + + K + + K +G D
Sbjct: 33 PHALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAE 92
Query: 336 TLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYN-IIGGLDEEGKGAV 512
T++ + ++++ S + + ML L+ R+ + + I+GG+D G +
Sbjct: 93 MTTRMAASNIELHALSTGREPRVATVTRMLRQKLF--RYQGHVGASLIVGGIDFTGP-QL 149
Query: 513 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 692
YS P GSY R F A GS +L+++ ++L+ A L+ + +
Sbjct: 150 YSVHPHGSYSRLPFTALGSGQDAALAVLEDRF---------QPNMTLEAAQGLLVEAITA 200
Query: 693 AAERDVYTGDALRICIVTKEGVR 761
D+ +G + C++ G +
Sbjct: 201 GILSDLGSGGNVDACVIMGTGAK 223
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,416,142
Number of extensions: 623408
Number of successful extensions: 1939
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 10
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008424
(916 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035315.1| proteasome subunit beta type-1 precursor [Mus m... 451 e-127
Alignment gi|XP_003085312.1| PREDICTED: splicing factor U2AF 65 kDa subun... 392 e-109
Alignment gi|NP_036101.1| proteasome subunit beta type-3 [Mus musculus]. 85 9e-17
Alignment gi|XP_003086740.1| PREDICTED: proteasome subunit beta type-3-li... 69 4e-12
Alignment gi|NP_036100.3| proteasome subunit beta type-2 [Mus musculus]. 62 5e-10
Alignment gi|NP_035316.1| proteasome subunit beta type-5 [Mus musculus]. 56 3e-08
Alignment gi|NP_780413.1| proteasome subunit beta type-11 precursor [Mus ... 52 6e-07
Alignment gi|NP_032972.3| proteasome subunit beta type-6 precursor [Mus m... 50 2e-06
Alignment gi|NP_035317.1| proteasome subunit beta type-7 precursor [Mus m... 49 4e-06
Alignment gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m... 49 7e-06
>ref|NP_035315.1| proteasome subunit beta type-1 precursor [Mus musculus].
Length = 240
Score = 451 bits (1160), Expect = e-127
Identities = 225/238 (94%), Positives = 229/238 (96%)
Frame = +3
Query: 75 SVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSI 254
S AAY R+L M PH +AGP QLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSI
Sbjct: 3 STAAYRDVERELGMGPHGSAGPVQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSI 62
Query: 255 HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTI 434
HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTI
Sbjct: 63 HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTI 122
Query: 435 LYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGF 614
LYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGF
Sbjct: 123 LYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGF 182
Query: 615 KNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRKD 788
KNMQNVEHVPL+LDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG+REETVPLRKD
Sbjct: 183 KNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>ref|XP_003085312.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Mus musculus].
Length = 730
Score = 392 bits (1006), Expect = e-109
Identities = 202/240 (84%), Positives = 208/240 (86%)
Frame = +3
Query: 75 SVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSI 254
S AAY R+L M P + GP LRFSPYAFNGG VLAIAGEDFSIVASDTRLSE FSI
Sbjct: 3 STAAYRDWDRELGMGPQGSVGPVXLRFSPYAFNGGPVLAIAGEDFSIVASDTRLSEEFSI 62
Query: 255 HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTI 434
HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIE RLKM NKAM TGA+AAMLSTI
Sbjct: 63 HTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIETRLKM-----NKAMRTGAVAAMLSTI 117
Query: 435 LYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGF 614
SRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDS KAG SASA LQPLL NQ GF
Sbjct: 118 PCSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSVKAGASASATLQPLLHNQTGF 177
Query: 615 KNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRKD*C 794
+ MQ+VEHVP LDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG+REETVPLRKD C
Sbjct: 178 RRMQSVEHVPRILDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKDSC 237
>ref|NP_036101.1| proteasome subunit beta type-3 [Mus musculus].
Length = 205
Score = 84.7 bits (208), Expect = 9e-17
Identities = 53/210 (25%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ G++ +A+D R + T D K + + D+ IG +G D T+
Sbjct: 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVA 64
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ RL +Y+ + + + +M++ +LY +RF PYY +I GLD + K + S
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ S + + ++ ++ + EH+ ++ +AM ++A
Sbjct: 125 DLIGCPMVTDDFVVSGTCSEQMYGMCESL--WEPNMDPEHLFETISQAM-------LNAV 175
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + ++ K+ + T+ R D
Sbjct: 176 DRDAVSGMGVIVHVIEKDKITTRTLKARMD 205
>ref|XP_003086740.1| PREDICTED: proteasome subunit beta type-3-like [Mus musculus].
Length = 205
Score = 69.3 bits (168), Expect = 4e-12
Identities = 48/210 (22%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ ++ +A+D R + T D K + + D+ +G +G D T+
Sbjct: 5 SYNGGAVMAMKEKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYVGLAGLAIDVQTVA 64
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ L +Y+ + + +M++ +LY + F PYY +I GLD + K + S
Sbjct: 65 QRLKFLLNLYELKEGWQIKPYTLMSMVANLLYEKWFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ S + + ++ ++ + EH+ ++ +AM ++A
Sbjct: 125 DLIGCPMVTDDFVVSGTCSEPMYRMCESL--WEPNMDPEHLFETISQAM-------LNAV 175
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + ++ K+ + T+ D
Sbjct: 176 DRDAVSGMGVIVHVIEKDKITTRTLKALMD 205
>ref|NP_036100.3| proteasome subunit beta type-2 [Mus musculus].
Length = 201
Score = 62.4 bits (150), Expect = 5e-10
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 5/197 (2%)
Frame = +3
Query: 183 VLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 362
++ I G D+ +VASD + D K +K+++K ++ C G GD + + I+
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 363 LKMYKHSNNKAMTTGAIAAM----LSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+++YK N ++ A A L+ L SR PY+V ++ G DE A+Y D +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDYL 121
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP-LSLDRAMRLVKDVFISAAERD 707
+ + F A G + + +LD + P +S +RA+ L++ +R
Sbjct: 122 AALAKAPFAAHGYGAFLTLSILDRY----------YTPTISRERAVELLRKCLEELQKRF 171
Query: 708 VYTGDALRICIVTKEGV 758
+ + ++ K+G+
Sbjct: 172 ILNLPTFSVRVIDKDGI 188
>ref|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].
Length = 264
Score = 56.2 bits (134), Expect = 3e-08
Identities = 49/220 (22%), Positives = 96/220 (43%)
Frame = +3
Query: 96 PGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPK 275
PG L++ S P + R +G T LA IVA+D+R + G I ++ K
Sbjct: 35 PGDGLSLAAPSWGVPEEPRIE--MLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKK 92
Query: 276 CYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF 455
++ + +G DC +++ + ++Y+ N + ++ A + +L+ ++Y +
Sbjct: 93 VIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGM 152
Query: 456 PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 635
+ +I G D+ G G +Y D G+ + + GS S ++D +
Sbjct: 153 GLSMGTMICGWDKRGPG-LYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSY------- 204
Query: 636 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 755
L ++ A L + A RD Y+G A+ + V ++G
Sbjct: 205 --DLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDG 242
>ref|NP_780413.1| proteasome subunit beta type-11 precursor [Mus musculus].
Length = 302
Score = 52.0 bits (123), Expect = 6e-07
Identities = 47/199 (23%), Positives = 78/199 (39%)
Frame = +3
Query: 159 PYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 338
P +G T LA I A+DTR S G + S K + + + SG DC T
Sbjct: 44 PRLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCAT 103
Query: 339 LTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 518
+++ L++ + + + A +L+ ++ R V + G D G Y
Sbjct: 104 WYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHSGPALFYV 163
Query: 519 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
+ Q D F GS S +LD G+ H +++ A L + A
Sbjct: 164 YSDGTCLQGDIFSV-GSGSPYAYGVLDR--GY-------HYDMTIQEAYTLARCAVAHAT 213
Query: 699 ERDVYTGDALRICIVTKEG 755
RD Y+G ++ + V + G
Sbjct: 214 HRDAYSGGSVDLFHVRESG 232
>ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus].
Length = 238
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/200 (22%), Positives = 78/200 (39%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T++A+ ++ +D+R + G I R + K + D SG D + +
Sbjct: 33 GTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAV 92
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 533
+L + N+ A++ + Y R II G D + G VYS G
Sbjct: 93 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGG 151
Query: 534 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVY 713
R SF GGS S+ + +D ++ D ++ + A ERD
Sbjct: 152 MMVRQSFAIGGSGSSYIYGYVD---------ATYREGMTKDECLQFTANALALAMERDGS 202
Query: 714 TGDALRICIVTKEGVREETV 773
+G +R+ + + GV + +
Sbjct: 203 SGGVIRLAAIQESGVERQVL 222
>ref|NP_035317.1| proteasome subunit beta type-7 precursor [Mus musculus].
Length = 277
Score = 49.3 bits (116), Expect = 4e-06
Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 8/212 (3%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T+ + +D ++ +DTR +EG + ++ K + ++ +G D T++I
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 354 EARLKMYKHSNNKAMTTGAIAAML-STILYSRRFFPYYVY----NIIGGLDEEGKGAVYS 518
+ L+++ ++TTG + ++ + + + F Y Y ++GG+D G +YS
Sbjct: 103 SSNLELH------SLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGP-HLYS 155
Query: 519 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
P GS + + GS S + +++ + + A +LV + +
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKF---------RPDMEEEEAKKLVSEAIAAGI 206
Query: 699 ERDVYTGDALRICIVTK---EGVREETVPLRK 785
D+ +G + +C+++K + +R +VP +K
Sbjct: 207 FNDLGSGSNIDLCVISKSKLDFLRPFSVPNKK 238
>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
Length = 276
Score = 48.5 bits (114), Expect = 7e-06
Identities = 44/195 (22%), Positives = 86/195 (44%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA + IVA D+R + G I + K ++ + SG DC ++
Sbjct: 71 HGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERL 130
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ ++Y N + ++ A + +LS ++ R + ++I G D++G G +Y D
Sbjct: 131 LAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPG-LYYVDDN 189
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
G+ + GS + ++D+ G++ LS + A L + A RD
Sbjct: 190 GTRLSGQMFSTGSGNTYAYGVMDS--GYRQ-------DLSPEEAYDLGRRAIAYATHRDN 240
Query: 711 YTGDALRICIVTKEG 755
Y+G + + + ++G
Sbjct: 241 YSGGVVNMYHMKEDG 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,212,063
Number of extensions: 794392
Number of successful extensions: 2684
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2674
Number of HSP's successfully gapped: 10
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008424
(916 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002784.1| proteasome subunit beta type-1 precursor [Homo ... 462 e-130
Alignment gi|NP_002786.2| proteasome subunit beta type-3 [Homo sapiens]. 83 4e-16
Alignment gi|NP_002785.1| proteasome subunit beta type-2 isoform 1 [Homo ... 63 4e-10
Alignment gi|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo ... 55 9e-08
Alignment gi|NP_001186708.1| proteasome subunit beta type-2 isoform 2 [Ho... 54 3e-07
Alignment gi|NP_002789.1| proteasome subunit beta type-6 precursor [Homo ... 51 1e-06
Alignment gi|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo... 51 2e-06
Alignment gi|NP_001093250.1| proteasome subunit beta type-11 precursor [H... 50 3e-06
Alignment gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr... 49 6e-06
>ref|NP_002784.1| proteasome subunit beta type-1 precursor [Homo sapiens].
Length = 241
Score = 462 bits (1189), Expect = e-130
Identities = 229/241 (95%), Positives = 233/241 (96%)
Frame = +3
Query: 66 MLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEG 245
MLSS A YS PGRDL M+PH AAGP QLRFSPY FNGGT+LAIAGEDF+IVASDTRLSEG
Sbjct: 1 MLSSTAMYSAPGRDLGMEPHRAAGPLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEG 60
Query: 246 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 425
FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML
Sbjct: 61 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML 120
Query: 426 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 605
STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
Sbjct: 121 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ 180
Query: 606 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVREETVPLRK 785
VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG+REETV LRK
Sbjct: 181 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRK 240
Query: 786 D 788
D
Sbjct: 241 D 241
>ref|NP_002786.2| proteasome subunit beta type-3 [Homo sapiens].
Length = 205
Score = 82.8 bits (203), Expect = 4e-16
Identities = 52/210 (24%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 165 AFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 344
++NGG V+A+ G++ +A+D R + T D K + + D+ IG +G D T+
Sbjct: 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVA 64
Query: 345 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAVYSF 521
+ ++ RL +Y+ + + + +M++ +LY +RF PYY +I GLD + K + S
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 522 DPVG-SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
D +G D F G+ + + + ++ ++ + +H+ ++ +AM ++A
Sbjct: 125 DLIGCPMVTDDFVVSGTCAEQMYGMCESL--WEPNMDPDHLFETISQAM-------LNAV 175
Query: 699 ERDVYTGDALRICIVTKEGVREETVPLRKD 788
+RD +G + + I+ K+ + T+ R D
Sbjct: 176 DRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
>ref|NP_002785.1| proteasome subunit beta type-2 isoform 1 [Homo sapiens].
Length = 201
Score = 62.8 bits (151), Expect = 4e-10
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 5/199 (2%)
Frame = +3
Query: 183 VLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 362
++ I G D+ +VASD + D K +K+++K ++ C G GD + + I+
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 363 LKMYKHSNNKAMTTGAIAAM----LSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+++YK N ++ A A L+ L SR PY+V ++ G DE A+Y D +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDYL 121
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP-LSLDRAMRLVKDVFISAAERD 707
+ + F A G + + +LD + P +S +RA+ L++ +R
Sbjct: 122 AALAKAPFAAHGYGAFLTLSILDRY----------YTPTISRERAVELLRKCLEELQKRF 171
Query: 708 VYTGDALRICIVTKEGVRE 764
+ + I+ K G+ +
Sbjct: 172 ILNLPTFSVRIIDKNGIHD 190
>ref|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo sapiens].
Length = 263
Score = 55.1 bits (131), Expect = 9e-08
Identities = 43/195 (22%), Positives = 88/195 (45%)
Frame = +3
Query: 171 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 350
+G T LA IVA+D+R + G I ++ K ++ + +G DC ++
Sbjct: 58 HGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERL 117
Query: 351 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 530
+ + ++Y+ N + ++ A + +L+ ++Y + + +I G D+ G G +Y D
Sbjct: 118 LARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPG-LYYVDSE 176
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
G+ + + GS S ++D + L +++A L + A RD
Sbjct: 177 GNRISGATFSVGSGSVYAYGVMDRGYSY---------DLEVEQAYDLARRAIYQATYRDA 227
Query: 711 YTGDALRICIVTKEG 755
Y+G A+ + V ++G
Sbjct: 228 YSGGAVNLYHVREDG 242
>ref|NP_001186708.1| proteasome subunit beta type-2 isoform 2 [Homo sapiens].
Length = 176
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 5/172 (2%)
Frame = +3
Query: 264 DSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAM----LST 431
D K +K+++K ++ C G GD + + I+ +++YK N ++ A A L+
Sbjct: 6 DHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLAD 65
Query: 432 ILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 611
L SR PY+V ++ G DE A+Y D + + + F A G + + +LD
Sbjct: 66 CLRSRT--PYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRY-- 121
Query: 612 FKNMQNVEHVP-LSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGVRE 764
+ P +S +RA+ L++ +R + + I+ K G+ +
Sbjct: 122 --------YTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHD 165
>ref|NP_002789.1| proteasome subunit beta type-6 precursor [Homo sapiens].
Length = 239
Score = 51.2 bits (121), Expect = 1e-06
Identities = 43/200 (21%), Positives = 80/200 (40%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T++A+ + ++ +D+R + G I R + K + D+ SG D + +
Sbjct: 34 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAV 93
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 533
+L + N+ A++ + Y R II G D + G VYS G
Sbjct: 94 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGG 152
Query: 534 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVY 713
R SF GGS S+ + +D ++ + ++ + A ERD
Sbjct: 153 MMVRQSFAIGGSGSSYIYGYVD---------ATYREGMTKEECLQFTANALALAMERDGS 203
Query: 714 TGDALRICIVTKEGVREETV 773
+G +R+ + + GV + +
Sbjct: 204 SGGVIRLAAIAESGVERQVL 223
>ref|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo sapiens].
Length = 277
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/208 (21%), Positives = 92/208 (44%), Gaps = 4/208 (1%)
Frame = +3
Query: 174 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 353
G T+ + +D ++ +DTR +EG + ++ K + ++ +G D T++I
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 354 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYY-VYNIIGGLDEEGKGAVYSFDPV 530
+ L+++ S + ML +L+ R+ Y ++GG+D G +YS P
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQMLF--RYQGYIGAALVLGGVDVTGP-HLYSIYPH 159
Query: 531 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDV 710
GS + + GS S + +++ + + A LV + + D+
Sbjct: 160 GSTDKLPYVTMGSGSLAAMAVFEDKF---------RPDMEEEEAKNLVSEAIAAGIFNDL 210
Query: 711 YTGDALRICIVTK---EGVREETVPLRK 785
+G + +C+++K + +R TVP +K
Sbjct: 211 GSGSNIDLCVISKNKLDFLRPYTVPNKK 238
>ref|NP_001093250.1| proteasome subunit beta type-11 precursor [Homo sapiens].
Length = 300
Score = 50.1 bits (118), Expect = 3e-06
Identities = 48/199 (24%), Positives = 78/199 (39%)
Frame = +3
Query: 159 PYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 338
P +G T LA I A+DTR S G + S K + + SG DC T
Sbjct: 44 PRLAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCAT 103
Query: 339 LTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 518
++++ L++ + + + + A +LS ++ R V + G D G Y
Sbjct: 104 WYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYV 163
Query: 519 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 698
+ Q D F GS S +LD G++ +S A L + A
Sbjct: 164 YSDGTRLQGDIFSV-GSGSPYAYGVLDR--GYR-------YDMSTQEAYALARCAVAHAT 213
Query: 699 ERDVYTGDALRICIVTKEG 755
RD Y+G ++ + V + G
Sbjct: 214 HRDAYSGGSVDLFHVRESG 232
>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo
sapiens].
Length = 272
Score = 48.9 bits (115), Expect = 6e-06
Identities = 52/241 (21%), Positives = 97/241 (40%)
Frame = +3
Query: 33 LAVRQQELSGAMLSSVAAYSVPGRDLAMDPHSAAGPSQLRFSPYAFNGGTVLAIAGEDFS 212
L V L L + + PG + S G + +G T LA +
Sbjct: 21 LLVEAAPLDDTTLPTPVSSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGV 80
Query: 213 IVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 392
I A D+R S G I K ++ + SG DC +++ ++Y N +
Sbjct: 81 IAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGE 140
Query: 393 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSA 572
++ A + +LS ++ R + ++I G D++G G +Y D G+ + + GS
Sbjct: 141 RISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPG-LYYVDEHGTRLSGNMFSTGSG 199
Query: 573 SAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 752
+ ++D+ G++ LS + A L + A RD Y+G + + + ++
Sbjct: 200 NTYAYGVMDS--GYR-------PNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKED 250
Query: 753 G 755
G
Sbjct: 251 G 251
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,353,264
Number of extensions: 932858
Number of successful extensions: 3001
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2999
Number of HSP's successfully gapped: 9
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008424
(916 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894396.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 563 e-158
Sscrofa_Chr07 84 2e-13
>gb|GL894396.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3065
Length = 59284
Score = 563 bits (284), Expect = e-158
Identities = 291/292 (99%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 601 accaggttggttttaagaacatgcaaaatgtggagcatgtcccattgtccttggacagag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44219 accaggttggttttaagaacatgcaaaatgtggagcatgtcccattgtccttggacagag 44278
Query: 661 ccatgcggctcgtgaaagatgtcttcatttctgctgctgagagggacgtgtacactgggg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44279 ccatgcggctcgtgaaagatgtcttcatttctgctgctgagagggacgtgtacactgggg 44338
Query: 721 acgcacttaggatctgcatcgtgaccaaggagggtgtccgggaggagaccgttcctctgc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44339 acgcacttaggatctgcatcgtgaccaaggagggtgtccgggaggagaccgttcctctgc 44398
Query: 781 ggaaggactgatgtctgtgctgttatcattggtcagttacaaactggttaattttgtgtc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44399 ggaaggactgatgtctgtgctgttatcattggtcagttacaaactggttaattttgtgtc 44458
Query: 841 ttgagactattggattgatttgtttta-taaaaaataaaaccccaagcactc 891
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 44459 ttgagactattggattgatttgttttattaaaaaataaaaccccaagcactc 44510
Score = 343 bits (173), Expect = 1e-91
Identities = 176/177 (99%)
Strand = Plus / Plus
Query: 2 ggaagtggcccgacttccggtcggccgcgatctcgccgtgagacagcaggagctgagcgg 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29616 ggaagtggcccgacttccggtcggccgccatctcgccgtgagacagcaggagctgagcgg 29675
Query: 62 cgcgatgttgtcttcggtagcagcgtactctgtccccggcagagacttggccatggatcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29676 cgcgatgttgtcttcggtagcagcgtactctgtccccggcagagacttggccatggatcc 29735
Query: 122 tcatagcgccgcgggtccttcgcagctgcgcttttcgccctacgctttcaatggagg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29736 tcatagcgccgcgggtccttcgcagctgcgcttttcgccctacgctttcaatggagg 29792
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 367 agatgtataagcattccaataataaggccatgactacgggggcaattgcagcaatgctgt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37828 agatgtataagcattccaataataaggccatgactacgggggcaattgcagcaatgctgt 37887
Query: 427 ccacaatcctctactccaggcgcttctttccctactacgtgtacaacatcatcgggggac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37888 ccacaatcctctactccaggcgcttctttccctactacgtgtacaacatcatcgggggac 37947
Query: 487 tcgatgaggaagg 499
|||||||||||||
Sbjct: 37948 tcgatgaggaagg 37960
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 496 aagggaagggagccgtgtacagctttgaccctgtggggtcctaccagagagattccttca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43042 aagggaagggagccgtgtacagctttgaccctgtggggtcctaccagagagattccttca 43101
Query: 556 aggctggaggctcagccagtgccatgctgcagcccctgcttgacaaccaggt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43102 aggctggaggctcagccagtgccatgctgcagcccctgcttgacaaccaggt 43153
Score = 208 bits (105), Expect = 4e-51
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 178 gaactgtattggcaattgcgggagaagatttttcgattgttgcttctgacacccgattga 237
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 31787 gaactgtattggcaattgcgggagaagatttttcaattgttgcttctgacacccgattga 31846
Query: 238 gtgaagggttttcaattcacacacgggacagccccaaatgttacaaatt 286
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31847 gtgaagggttttcaattcacacacgggacagccccaaatgttacaaatt 31895
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 287 aacagacaaaacagtcattggttgtagtggttttcatggagactgtcttaccctgacaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35222 aacagacaaaacagtcattggttgtagtggttttcatggagactgtcttaccctgacaaa 35281
Query: 347 aattattgaagcaagactaaag 368
||||||||||||||||||||||
Sbjct: 35282 aattattgaagcaagactaaag 35303
>Sscrofa_Chr07
|| Length = 134764511
Score = 83.8 bits (42), Expect = 2e-13
Identities = 187/233 (80%), Gaps = 3/233 (1%)
Strand = Plus / Plus
Query: 183 gtattggcaattgcgggagaagatttttcgattgttgcttctgacacccgattgagtgaa 242
|||||||||| ||| || ||||||||| | |||||||||||||| || || | || |||
Sbjct: 77289458 gtattggcaactgctggggaagatttt-caattgttgcttctgatacttgactaagagaa 77289516
Query: 243 gggttttcaattcacacacgggacagccccaaatgttacaaattaacagacaaaacagtc 302
||||||||| |||| | || |||||||||||||||||||||||||| |||||| ||
Sbjct: 77289517 gggttttcagttcattcctggaacagccccaaatgttacaaattaacaaacaaaatggtg 77289576
Query: 303 attggttgtagtggttttcatggagactgtcttaccctgacaaaaattattgaagcaaga 362
||| ||||| |||||| ||||||| | ||| |||| | | ||| ||| |||
Sbjct: 77289577 cctggatgtagcagttttcttggagac--tattatgctgatgagggtgattaaagtaagc 77289634
Query: 363 ctaaagatgtataagcattccaataataaggccatgactacgggggcaattgc 415
||||||||||| ||||||||||||| |||||||||||| || ||||| |||||
Sbjct: 77289635 ctaaagatgtagaagcattccaatactaaggccatgaccactggggccattgc 77289687
Score = 61.9 bits (31), Expect = 6e-07
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 547 attccttcaaggctggaggctcagccagtgccatgctgcagcccctgcttgacaaccagg 606
||||||||||| ||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 77266811 attccttcaagtctggaggctcagcagatgtcactctacagcccctgcttgacaaccagg 77266752
Query: 607 ttggttttaagaacatgca 625
|| | ||||||||||||
Sbjct: 77266751 ttcatcctaagaacatgca 77266733
Score = 58.0 bits (29), Expect = 9e-06
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 491 tgaggaagggaagggagccgtgtacagctttgaccctgtgg 531
|||||||| |||||||||| |||||||||||||||| ||||
Sbjct: 77289755 tgaggaagtgaagggagccatgtacagctttgacccagtgg 77289795
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,126,197
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 10
Length of query: 916
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 895
Effective length of database: 2,808,413,156
Effective search space: 2513529774620
Effective search space used: 2513529774620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)