Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008427
(1077 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092528.1| torsin-1A [Bos taurus]. 623 e-179
Alignment gi|XP_002691721.1| PREDICTED: torsin family 1, member B (torsin... 418 e-117
Alignment gi|XP_613495.4| PREDICTED: torsin family 1, member B (torsin B)... 416 e-116
Alignment gi|NP_001076945.1| torsin-2A precursor [Bos taurus]. 267 1e-71
Alignment gi|NP_001073845.1| torsin-3A [Bos taurus]. 257 1e-68
Alignment gi|XP_002691726.1| PREDICTED: hypothetical protein [Bos taurus]. 73 5e-13
Alignment gi|XP_875868.1| PREDICTED: hypothetical protein [Bos taurus]. 73 5e-13
>ref|NP_001092528.1| torsin-1A [Bos taurus].
Length = 333
Score = 623 bits (1607), Expect = e-179
Identities = 303/316 (95%), Positives = 312/316 (98%)
Frame = +2
Query: 113 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
VRAVEPISLGLALAGVLTGYISYPRL+C F ECCS K SLSREALQKDLDSKLFGQHLAK
Sbjct: 18 VRAVEPISLGLALAGVLTGYISYPRLYCLFAECCSPKRSLSREALQKDLDSKLFGQHLAK 77
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
KVILNA+SGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL
Sbjct: 78 KVILNALSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 137
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV
Sbjct: 138 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 197
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEI+L+DMEHALSVSAFNNKNSGFWHSS
Sbjct: 198 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIKLKDMEHALSVSAFNNKNSGFWHSS 257
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYE+DEDIVS+VAEEMTFFPKEERVFS+
Sbjct: 258 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEVDEDIVSRVAEEMTFFPKEERVFSD 317
Query: 1013 QGCKTVFTKLDYYYND 1060
+GCKTVFTKLDYYY+D
Sbjct: 318 KGCKTVFTKLDYYYDD 333
>ref|XP_002691721.1| PREDICTED: torsin family 1, member B (torsin B)-like [Bos taurus].
Length = 309
Score = 418 bits (1074), Expect = e-117
Identities = 192/282 (68%), Positives = 245/282 (86%), Gaps = 2/282 (0%)
Frame = +2
Query: 212 CSQKG-SLSRE-ALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTG 385
C KG +L R AL++DL+ KLFGQHLA +VIL A++GF +N PKKPLTLSLHGW GTG
Sbjct: 28 CDPKGCALPRSRALKQDLEEKLFGQHLATEVILKALTGFKNNKNPKKPLTLSLHGWAGTG 87
Query: 386 KNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIF 565
KNFVS+I+AEN++ GL S++VHLFV+TLHFPH +I LY+DQLQ WIRGNVSACA S+F
Sbjct: 88 KNFVSQIVAENLHPKGLKSNFVHLFVSTLHFPHEQHIKLYQDQLQRWIRGNVSACAGSVF 147
Query: 566 IFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQ 745
IFDEMDK+H G+IDAIKP+LDYY+ +DGVSY+KAIFIFLSNAG + IT ALDFWR+G++
Sbjct: 148 IFDEMDKLHPGVIDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRK 207
Query: 746 REEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQS 925
RE+I+L+D+E LSV FNNK+SG WHS LIDRNLIDYF+PFLPLEY+H+KMC++ EM++
Sbjct: 208 REDIQLKDLEAVLSVGVFNNKHSGLWHSGLIDRNLIDYFIPFLPLEYRHVKMCVQAEMKA 267
Query: 926 RGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLDYY 1051
RG +DED+V++VAEEMTFFPK+E+++S++GCKTV ++LD+Y
Sbjct: 268 RGSAVDEDVVTRVAEEMTFFPKDEKIYSDKGCKTVQSRLDFY 309
>ref|XP_613495.4| PREDICTED: torsin family 1, member B (torsin B) [Bos taurus].
Length = 379
Score = 416 bits (1070), Expect = e-116
Identities = 187/270 (69%), Positives = 239/270 (88%)
Frame = +2
Query: 242 ALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENI 421
AL++DL+ KLFGQHLA +VIL A++GF +N PKKPLTLSLHGW GTGKNFVS+I+AEN+
Sbjct: 110 ALKQDLEEKLFGQHLATEVILKALTGFKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENL 169
Query: 422 YEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGL 601
+ GL S++VHLFV+TLHFPH +I LY+DQLQ WIRGNVSACA S+FIFDEMDK+H G+
Sbjct: 170 HPKGLKSNFVHLFVSTLHFPHEQHIKLYQDQLQRWIRGNVSACAGSVFIFDEMDKLHPGV 229
Query: 602 IDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHA 781
IDAIKP+LDYY+ +DGVSY+KAIFIFLSNAG + IT ALDFWR+G++RE+I+L+D+E
Sbjct: 230 IDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRKREDIQLKDLEAV 289
Query: 782 LSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSK 961
LSV FNNK+SG WHS LIDRNLIDYF+PFLPLEY+H+KMC++ EM++RG +DED+V++
Sbjct: 290 LSVGVFNNKHSGLWHSGLIDRNLIDYFIPFLPLEYRHVKMCVQAEMKARGSAVDEDVVTR 349
Query: 962 VAEEMTFFPKEERVFSEQGCKTVFTKLDYY 1051
VAEEMTFFPK+E+++S++GCKTV ++LD+Y
Sbjct: 350 VAEEMTFFPKDEKIYSDKGCKTVQSRLDFY 379
>ref|NP_001076945.1| torsin-2A precursor [Bos taurus].
Length = 321
Score = 267 bits (683), Expect = 1e-71
Identities = 121/288 (42%), Positives = 190/288 (65%)
Frame = +2
Query: 188 LFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLH 367
L C F C + L+ DL L GQHLA+ +++ A+ F+ +P P KPL LSLH
Sbjct: 33 LRCNFGSFCECDFQPDFQGLECDLAQHLAGQHLARSLVVKALKAFLQDPAPTKPLVLSLH 92
Query: 368 GWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSA 547
GWTGTGK++VS ++A ++ GL S +VH F +HFPH S++ YK L+SW++GN++
Sbjct: 93 GWTGTGKSYVSSLLAHYLFRDGLRSPHVHHFSPVIHFPHPSHLERYKKDLKSWVQGNLTV 152
Query: 548 CARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDF 727
C+RS+F+FDEMDK+ GLI+ ++P+L + G +Y+KAIFIF+SN G E+I V L+
Sbjct: 153 CSRSLFLFDEMDKLAPGLIEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGEQINQVVLEA 212
Query: 728 WRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCI 907
WRS ++REEI L+++ +S + +N + GFW S +++ +L+D VPFLPL+ H++ C+
Sbjct: 213 WRSRREREEIGLQELGPVISQAVLDNPHHGFWRSGIMEEHLLDVLVPFLPLQRHHVRHCV 272
Query: 908 RVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLDYY 1051
E+ G E +++V V + FFP++E +FS GCK V +++ ++
Sbjct: 273 LNELAHLGLEPRDEVVQAVLDSTIFFPEDEPLFSSNGCKMVASRIAFF 320
>ref|NP_001073845.1| torsin-3A [Bos taurus].
Length = 402
Score = 257 bits (656), Expect = 1e-68
Identities = 120/289 (41%), Positives = 189/289 (65%), Gaps = 4/289 (1%)
Frame = +2
Query: 194 CFFTECCSQ---KGSLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSL 364
C F +CC + K + L+ DL +L GQHLA++++L AV ++ P+P K L LS
Sbjct: 109 CSFWDCCDRGDCKIINNFTGLKADLRVRLHGQHLARELVLTAVRDYLEKPRPDKALALSF 168
Query: 365 HGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVS 544
HGW+GTGKNFV++++AEN+Y+ GL SD V +F++TLHFPH N+ LY+++L IR
Sbjct: 169 HGWSGTGKNFVARMLAENLYQDGLRSDCVKVFISTLHFPHPKNVDLYEEELTDKIRKTQE 228
Query: 545 ACARSIFIFDEMDKMHAGLIDAIKPYLD-YYDNLDGVSYQKAIFIFLSNAGAERITDVAL 721
C +++FI DE +K+H GL++A++P+L+ N ++ IF+FLSN G I +V L
Sbjct: 229 HCRQTLFILDEAEKLHPGLLEALRPHLERQAPNNHRAESKRTIFLFLSNLGGNIINEVVL 288
Query: 722 DFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKM 901
+ ++G+ REE+R+ +E L + +SGF HS L+ NLID F+PFLPLE++H+++
Sbjct: 289 NLLKAGQSREEVRMEHLESRLQAEIVASTDSGFGHSRLVKENLIDLFIPFLPLEFRHVRL 348
Query: 902 CIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLDY 1048
C R S+ E+ + ++A M + PKEE++FS QGCK++ ++ Y
Sbjct: 349 CARDAFLSQDLLYTEEALDEMARMMVYVPKEEQLFSSQGCKSISQRISY 397
>ref|XP_002691726.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 406
Score = 72.8 bits (177), Expect = 5e-13
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 239 EALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 418
+ L+K L +FGQ A ++ + +++ +PL L+LHG +G GK+ V +++A +
Sbjct: 140 DGLEKTLQRAVFGQPAAVGRLVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH 199
Query: 419 IYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARS-----IFIFDEMD 583
+ V + H P T +++L + +V A A + + + D+ +
Sbjct: 200 FRAVLEDGALVLQYHTRHHCPAPRAATGCREELARRV-ADVLARAEAEEKTPLLVLDDAE 258
Query: 584 KMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVAL-DFWRSGKQ--REE 754
+ L+D + L + A+++ LS AG +T L + R+G+ EE
Sbjct: 259 LLPPALLDELHGLL---QPQRPPRFHNAVYVLLSGAGGAEVTRFVLQNASRAGRADGAEE 315
Query: 755 IRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGY 934
+R + E S+ A + W ++ I VPFL L+ + + C R EM G+
Sbjct: 316 LRAAEEELRASLHALLVRQHPLWEAAAI--------VPFLLLDKRDVVNCFRDEMAGEGF 367
Query: 935 EIDEDIVSKVAEEMTFFPKEERVFSEQGCKTV 1030
++ +A +++++ R F+ GCK V
Sbjct: 368 FPEQARAELLAAQLSYYRVAGREFAVNGCKQV 399
>ref|XP_875868.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 406
Score = 72.8 bits (177), Expect = 5e-13
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 239 EALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 418
+ L+K L +FGQ A ++ + +++ +PL L+LHG +G GK+ V +++A +
Sbjct: 140 DGLEKTLQRAVFGQPAAVGRLVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH 199
Query: 419 IYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARS-----IFIFDEMD 583
+ V + H P T +++L + +V A A + + + D+ +
Sbjct: 200 FRAVLEDGALVLQYHTRHHCPAPRAATGCREELARRV-ADVLARAEAEEKTPLLVLDDAE 258
Query: 584 KMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVAL-DFWRSGKQ--REE 754
+ L+D + L + A+++ LS AG +T L + R+G+ EE
Sbjct: 259 LLPPALLDELHGLL---QPQRPPRFHNAVYVLLSGAGGAEVTRFVLQNASRAGRADGAEE 315
Query: 755 IRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGY 934
+R + E S+ A + W ++ I VPFL L+ + + C R EM G+
Sbjct: 316 LRAAEEELRASLHALLVRQHPLWEAAAI--------VPFLLLDKRDVVNCFRDEMAGEGF 367
Query: 935 EIDEDIVSKVAEEMTFFPKEERVFSEQGCKTV 1030
++ +A +++++ R F+ GCK V
Sbjct: 368 FPEQARAELLAAQLSYYRVAGREFAVNGCKQV 399
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,180,105
Number of extensions: 826253
Number of successful extensions: 2383
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2380
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008427
(1077 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548417.2| PREDICTED: similar to Torsin A precursor (Torsi... 604 e-173
Alignment gi|XP_548418.2| PREDICTED: similar to Torsin B precursor (Torsi... 410 e-115
Alignment gi|XP_851500.1| PREDICTED: similar to torsin family 2, member A... 285 5e-77
Alignment gi|XP_547446.2| PREDICTED: similar to torsin family 3, member A... 259 2e-69
Alignment gi|XP_548350.1| PREDICTED: similar to torsin family 2, member A... 74 2e-13
>ref|XP_548417.2| PREDICTED: similar to Torsin A precursor (Torsin family 1 member A)
(Dystonia 1 protein) [Canis familiaris].
Length = 421
Score = 604 bits (1557), Expect = e-173
Identities = 300/345 (86%), Positives = 314/345 (91%)
Frame = +2
Query: 26 RRENAPGSXXXXXXXXXXXXXXXXXXXXXVRAVEPISLGLALAGVLTGYISYPRLFCFFT 205
+R+NA G VRAVEPISLGLALAGVLTGYI YPRL+C FT
Sbjct: 78 QRQNARGGAGPGMKLGRAVLGLLLLAPLAVRAVEPISLGLALAGVLTGYI-YPRLYCLFT 136
Query: 206 ECCSQKGSLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTG 385
ECC QK SLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTG
Sbjct: 137 ECCGQKRSLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTG 196
Query: 386 KNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIF 565
KNFVSKIIAENIYEGGLNSDYVHLFVATLHFPH SNITLYKDQLQ WIR NVSACARSIF
Sbjct: 197 KNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRSNVSACARSIF 256
Query: 566 IFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQ 745
IFDEMDKMHAGLIDAIKP+LDYYD++DGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQ
Sbjct: 257 IFDEMDKMHAGLIDAIKPFLDYYDHVDGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQ 316
Query: 746 REEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQS 925
REEIRL+DME ALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQS
Sbjct: 317 REEIRLKDMEPALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQS 376
Query: 926 RGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLDYYYND 1060
RG++IDEDIV+KVA+EMTFFPKEERVFS++GCKTVFTKLDYYY+D
Sbjct: 377 RGFDIDEDIVTKVADEMTFFPKEERVFSDKGCKTVFTKLDYYYDD 421
>ref|XP_548418.2| PREDICTED: similar to Torsin B precursor (Torsin family 1 member B)
[Canis familiaris].
Length = 307
Score = 410 bits (1055), Expect = e-115
Identities = 190/309 (61%), Positives = 246/309 (79%)
Frame = +2
Query: 125 EPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAKKVIL 304
E + + +A A LTGY+SY LFC F ECC ++ L+ AL+ +L+ KLFGQHLA +VIL
Sbjct: 18 EGVGIAIAAASALTGYLSYTDLFCRFAECCLEEQRLNASALKLELEEKLFGQHLATEVIL 77
Query: 305 NAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPH 484
A++GF +N PKKPLTLSLHGW GTGKNFVS+I+AEN++ GL S++VHLFV+TLHFPH
Sbjct: 78 KALTGFKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHSKGLKSNFVHLFVSTLHFPH 137
Query: 485 ISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQK 664
I LY+DQLQ+WIRGNVSACA S+FIFDEMDK+H G+IDAIKP+LDYY+ +DGVS++K
Sbjct: 138 EQQIKLYQDQLQAWIRGNVSACASSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGVSFRK 197
Query: 665 AIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDR 844
AIFIFL ++RE+I+L+D+E LSV FNNK+SG WHS LIDR
Sbjct: 198 AIFIFL-------------------RKREDIQLKDLEPVLSVGVFNNKHSGLWHSGLIDR 238
Query: 845 NLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCK 1024
NLIDYF+PFLPLEY+H+KMC+R EM++RG IDED+V++VAEEMTFFPK E+++S++GCK
Sbjct: 239 NLIDYFIPFLPLEYRHVKMCVRAEMRARGSAIDEDVVTRVAEEMTFFPKSEKIYSDKGCK 298
Query: 1025 TVFTKLDYY 1051
TV ++LD++
Sbjct: 299 TVQSRLDFH 307
>ref|XP_851500.1| PREDICTED: similar to torsin family 2, member A [Canis familiaris].
Length = 342
Score = 285 bits (729), Expect = 5e-77
Identities = 130/302 (43%), Positives = 205/302 (67%)
Frame = +2
Query: 146 ALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAKKVILNAVSGFI 325
A AG G + YP+ + F+ S L L+ DL L GQHLAK +++ A+ F+
Sbjct: 43 AAAGDPKGPLPYPKTWWVFS---SDTALLVALGLECDLAQHLAGQHLAKALVVKALKAFV 99
Query: 326 SNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLY 505
+P P KPL LSLHGWTGTGK+++S ++A ++ GGL+S +VH F +HFPH S++ Y
Sbjct: 100 QDPAPTKPLVLSLHGWTGTGKSYISSLLAHYLFRGGLHSPHVHHFSPVIHFPHASHLERY 159
Query: 506 KDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLS 685
K +L+SW++GN++AC+RS+F+FDEMDK+ GL++ ++P+L + G +Y+KAIFIF+S
Sbjct: 160 KKELKSWVQGNLTACSRSLFLFDEMDKLAPGLMEVLRPFLGSSWVVFGTNYRKAIFIFIS 219
Query: 686 NAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFV 865
N G E+I V L+ W S + REEIRL+++E +S + +N + GFW S +++ +L+D V
Sbjct: 220 NTGGEQINQVVLEAWHSRRDREEIRLQELELVISQAVLDNPHHGFWRSGIMEEHLLDVLV 279
Query: 866 PFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLD 1045
PFLPL+ H++ C+ E+ G E E+++ V + TFFP++E++FS GCKTV +++
Sbjct: 280 PFLPLQRHHVRHCVLNELAQLGLEPREEVIQAVLDSTTFFPEKEQLFSSNGCKTVASRIA 339
Query: 1046 YY 1051
++
Sbjct: 340 FF 341
>ref|XP_547446.2| PREDICTED: similar to torsin family 3, member A [Canis familiaris].
Length = 444
Score = 259 bits (663), Expect = 2e-69
Identities = 126/310 (40%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Frame = +2
Query: 137 LGLALAGVLTGYISYPRLFCFFTECCSQKG---SLSREALQKDLDSKLFGQHLAKKVILN 307
LG +LT + +C F +CC + S + L+ DL +L GQHLA++++L
Sbjct: 140 LGQQYLAILTSW------YCSFQDCCDSEDCRISNNFTGLESDLSIRLHGQHLARELVLT 193
Query: 308 AVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHI 487
AV G++ P+P K L LS HGW+GTGKNFV++++AEN+Y G SD V +F+AT HFPH
Sbjct: 194 AVKGYLELPRPDKALALSFHGWSGTGKNFVARLLAENLYRDGQRSDCVKMFIATFHFPHP 253
Query: 488 SNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYY--DNLDGVSYQ 661
+ LYK+QL + I+ C +++FIFDE +K+H GL++ ++P+L+ +N S +
Sbjct: 254 KYVDLYKEQLTTQIKKTQERCHQTLFIFDEAEKLHPGLLEVLRPHLERQAPENHRAKS-R 312
Query: 662 KAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLID 841
K IF+FLSN G + + L+ ++G REEI+L + L + +SGF HS L+
Sbjct: 313 KTIFLFLSNLGGNIVNEAVLNLLQAGGSREEIKLEHLVPRLRAEIEQSTDSGFGHSCLVK 372
Query: 842 RNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGC 1021
NLID+FVPFLPLEY+H+++C R S+ E+ + ++A+ M + PKEE++FS QGC
Sbjct: 373 ENLIDFFVPFLPLEYRHVRLCARDAFLSQELLYTEEALDQIAKMMVYVPKEEQLFSSQGC 432
Query: 1022 KTVFTKLDYY 1051
K++ +++Y+
Sbjct: 433 KSISQRINYF 442
>ref|XP_548350.1| PREDICTED: similar to torsin family 2, member A [Canis familiaris].
Length = 424
Score = 73.9 bits (180), Expect = 2e-13
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 14/283 (4%)
Frame = +2
Query: 239 EALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 418
+ L+K L +FGQ A I+ + +++ +PL L+LHG +G GK+ V +++A +
Sbjct: 151 DGLEKALQRAVFGQPEAVARIVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH 210
Query: 419 IYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSAC----ARSIFIFDEMDK 586
+ V + A H P +++L + + V+ + + DE +
Sbjct: 211 FRSVLEDGALVLQYHARHHCPEARAAQACREELAALVADVVARAEVEEKTPLVVLDEAEL 270
Query: 587 MHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDFWRS-GKQREEIRL 763
M L+D + +L + AI++ LS G IT L S G QR + L
Sbjct: 271 MPPALLDELHGFL---QPQRAHPFHNAIYVLLSGVGGAEITRFVLQNAASAGPQRPDAHL 327
Query: 764 R---------DMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVE 916
D E + + W ++ I VPFL L+ + + C R E
Sbjct: 328 EPALAAAVQTDEELRARLRVLLVREHPLWQAAAI--------VPFLLLDKQDVVSCFRDE 379
Query: 917 MQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLD 1045
M G+ ++ +A +++++ R FS GCK V +++
Sbjct: 380 MAGEGFFPEQARAELLAAQLSYYRVAGREFSVTGCKQVVARVN 422
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,727,329
Number of extensions: 852921
Number of successful extensions: 2466
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2461
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008427
(1077 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098768.1| torsin-1A [Sus scrofa]. 639 0.0
Alignment gi|XP_003122269.1| PREDICTED: torsin-1A-like [Sus scrofa]. 639 0.0
Alignment gi|XP_001929298.1| PREDICTED: torsin-1B-like [Sus scrofa]. 455 e-128
Alignment gi|XP_003122264.1| PREDICTED: torsin-1B-like [Sus scrofa]. 455 e-128
Alignment gi|XP_003130388.2| PREDICTED: torsin-3A [Sus scrofa]. 241 5e-64
Alignment gi|XP_003122220.2| PREDICTED: torsin-2A-like, partial [Sus scro... 209 3e-54
Alignment gi|XP_003357600.1| PREDICTED: torsin-3A-like [Sus scrofa]. 132 3e-31
Alignment gi|XP_003353719.1| PREDICTED: torsin-2A-like [Sus scrofa]. 119 3e-27
Alignment gi|XP_003122389.1| PREDICTED: torsin family protein C9orf167-li... 67 2e-11
>ref|NP_001098768.1| torsin-1A [Sus scrofa].
Length = 333
Score = 639 bits (1648), Expect = 0.0
Identities = 313/316 (99%), Positives = 316/316 (100%)
Frame = +2
Query: 113 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK
Sbjct: 18 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 77
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL
Sbjct: 78 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 137
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV
Sbjct: 138 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 197
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS
Sbjct: 198 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 257
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFS+
Sbjct: 258 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSD 317
Query: 1013 QGCKTVFTKLDYYYND 1060
+GCKTVFTKLDYYY+D
Sbjct: 318 KGCKTVFTKLDYYYDD 333
>ref|XP_003122269.1| PREDICTED: torsin-1A-like [Sus scrofa].
Length = 333
Score = 639 bits (1647), Expect = 0.0
Identities = 312/316 (98%), Positives = 316/316 (100%)
Frame = +2
Query: 113 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK
Sbjct: 18 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 77
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL
Sbjct: 78 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 137
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV
Sbjct: 138 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 197
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS
Sbjct: 198 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 257
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYE+DEDIVSKVAEEMTFFPKEERVFS+
Sbjct: 258 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEVDEDIVSKVAEEMTFFPKEERVFSD 317
Query: 1013 QGCKTVFTKLDYYYND 1060
+GCKTVFTKLDYYY+D
Sbjct: 318 KGCKTVFTKLDYYYDD 333
>ref|XP_001929298.1| PREDICTED: torsin-1B-like [Sus scrofa].
Length = 336
Score = 455 bits (1170), Expect = e-128
Identities = 208/313 (66%), Positives = 266/313 (84%), Gaps = 2/313 (0%)
Frame = +2
Query: 119 AVEPISLGLAL--AGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
A EPI+LG+A+ A VLTGY+SY LFC F ECC ++ L+ A + +L+ +LFGQHLA
Sbjct: 24 AFEPITLGIAIGTASVLTGYLSYTELFCRFAECCREEQPLNASAFKLELEERLFGQHLAT 83
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
+V+L A++GF +N PKK LTLSLHGW GTGKNFVS+I+AEN++ GL S++VHLFV+TL
Sbjct: 84 EVLLKALTGFRNNKNPKKALTLSLHGWAGTGKNFVSQIVAENLHRKGLKSNFVHLFVSTL 143
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPH ++ LY+DQLQ WIRGNVSACA S+FIFDEMDK+H GLIDAIKP+LDYY+ +DGV
Sbjct: 144 HFPHEQHVKLYQDQLQRWIRGNVSACANSVFIFDEMDKLHPGLIDAIKPFLDYYEQIDGV 203
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SY+KAIFIFLSNAG + IT ALDFWR+G++RE+I+L+D+E LSV FNNK+SG WHS
Sbjct: 204 SYRKAIFIFLSNAGGDLITKTALDFWRAGRRREDIQLKDLEPVLSVGVFNNKHSGLWHSG 263
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LI+RNLIDYFVPFLPLEY+H+KMC+R EM++RG +DEDIV+KVAEEMTFFPK+E+++S+
Sbjct: 264 LIERNLIDYFVPFLPLEYRHVKMCVRAEMKARGSAVDEDIVTKVAEEMTFFPKDEKIYSD 323
Query: 1013 QGCKTVFTKLDYY 1051
+GCKTV T+LD++
Sbjct: 324 KGCKTVQTRLDFH 336
>ref|XP_003122264.1| PREDICTED: torsin-1B-like [Sus scrofa].
Length = 336
Score = 455 bits (1170), Expect = e-128
Identities = 208/313 (66%), Positives = 266/313 (84%), Gaps = 2/313 (0%)
Frame = +2
Query: 119 AVEPISLGLAL--AGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
A EPI+LG+A+ A VLTGY+SY LFC F ECC ++ L+ A + +L+ +LFGQHLA
Sbjct: 24 AFEPITLGIAIGTASVLTGYLSYTELFCRFAECCREEQPLNASAFKLELEERLFGQHLAT 83
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
+V+L A++GF +N PKK LTLSLHGW GTGKNFVS+I+AEN++ GL S++VHLFV+TL
Sbjct: 84 EVLLKALTGFRNNKNPKKALTLSLHGWAGTGKNFVSQIVAENLHRKGLKSNFVHLFVSTL 143
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPH ++ LY+DQLQ WIRGNVSACA S+FIFDEMDK+H GLIDAIKP+LDYY+ +DGV
Sbjct: 144 HFPHEQHVKLYQDQLQRWIRGNVSACANSVFIFDEMDKLHPGLIDAIKPFLDYYEQIDGV 203
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SY+KAIFIFLSNAG + IT ALDFWR+G++RE+I+L+D+E LSV FNNK+SG WHS
Sbjct: 204 SYRKAIFIFLSNAGGDLITKTALDFWRAGRRREDIQLKDLEPVLSVGVFNNKHSGLWHSG 263
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LI+RNLIDYFVPFLPLEY+H+KMC+R EM++RG +DEDIV+KVAEEMTFFPK+E+++S+
Sbjct: 264 LIERNLIDYFVPFLPLEYRHVKMCVRAEMKARGSAVDEDIVTKVAEEMTFFPKDEKIYSD 323
Query: 1013 QGCKTVFTKLDYY 1051
+GCKTV T+LD++
Sbjct: 324 KGCKTVQTRLDFH 336
>ref|XP_003130388.2| PREDICTED: torsin-3A [Sus scrofa].
Length = 404
Score = 241 bits (615), Expect = 5e-64
Identities = 116/292 (39%), Positives = 184/292 (63%), Gaps = 5/292 (1%)
Frame = +2
Query: 191 FCFFTECCSQKGSL---SREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLS 361
+C F +CC + L+ DL +L GQHLA++++L AV G++ P+P K L LS
Sbjct: 112 YCSFQDCCDSGDCRIINNFTGLEADLRVRLHGQHLARELVLAAVRGYLELPQPDKALALS 171
Query: 362 LHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNV 541
HG +GTGKNF+++++AEN++ GL S+ V +F+ATLHFPH + YK+QL IR
Sbjct: 172 FHGSSGTGKNFMARLLAENLFRDGLRSNCVQVFIATLHFPHPKYVDQYKEQLTGQIRKTQ 231
Query: 542 SACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDG--VSYQKAIFIFLSNAGAERITDV 715
C +++FI DE +K+H L++ + P LD L+ ++IF+FLSN G I +V
Sbjct: 232 ERCHQTLFILDEAEKLHPELLEVLGPQLD-RQTLENHRAKSPRSIFLFLSNLGGSVINEV 290
Query: 716 ALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHL 895
LD + G+ RE+IR+ ++E L + +SGF HS L+ NL+D+ +PFLPLEY+H+
Sbjct: 291 VLDLLKGGRSREDIRMENLEPHLQAEIVESTDSGFGHSRLVKENLMDFLIPFLPLEYRHV 350
Query: 896 KMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLDYY 1051
++C R S+ E + ++A+ M + PKEE++FS QGCK++ +++Y+
Sbjct: 351 RLCARDAFLSQELLYTEAALDEIAKMMVYVPKEEQLFSSQGCKSISQRINYF 402
>ref|XP_003122220.2| PREDICTED: torsin-2A-like, partial [Sus scrofa].
Length = 236
Score = 209 bits (531), Expect = 3e-54
Identities = 99/211 (46%), Positives = 143/211 (67%)
Frame = +2
Query: 188 LFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLH 367
L C F C + L+ DL L GQHLA+ +++ A+ F+ +P P KPL LSLH
Sbjct: 15 LRCNFGTFCECDFRPDFQGLECDLAQHLAGQHLARALVVKALKAFVQDPAPTKPLVLSLH 74
Query: 368 GWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSA 547
GWTGTGK++VS ++A ++ GGL S +VH F +HFPH S++ YK L+SWI+GN+ A
Sbjct: 75 GWTGTGKSYVSSLLAHYLFRGGLRSPHVHHFSPVIHFPHPSHMERYKKDLKSWIQGNLPA 134
Query: 548 CARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDF 727
C+RS+F+FDEMDK+ GLI+ ++P+L + G +Y+KAIFIF+SN G E+I VAL+
Sbjct: 135 CSRSLFLFDEMDKLTPGLIEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGEQINQVALEA 194
Query: 728 WRSGKQREEIRLRDMEHALSVSAFNNKNSGF 820
WRS + REEIRL+++E +S + +N + F
Sbjct: 195 WRSRRDREEIRLQELEPVVSQAVMDNPHREF 225
>ref|XP_003357600.1| PREDICTED: torsin-3A-like [Sus scrofa].
Length = 175
Score = 132 bits (332), Expect = 3e-31
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Frame = +2
Query: 245 LQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIY 424
L+ DL +L GQHLA++++L AV G++ P+P K L LS HG +GTGKNF+++++AEN++
Sbjct: 9 LEADLRVRLHGQHLARELVLAAVRGYLELPQPDKALALSFHGSSGTGKNFMARLLAENLF 68
Query: 425 EGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLI 604
GL S+ V +F+ATLHFPH + YK+QL IR C +++FI DE +K+H L+
Sbjct: 69 RDGLRSNCVQVFIATLHFPHPKYVDQYKEQLTGQIRKTQERCHQTLFILDEAEKLHPELL 128
Query: 605 DAIKPYLDYYDNLDG--VSYQKAIFIFLS 685
+ + P LD L+ ++IF+FLS
Sbjct: 129 EVLGPQLD-RQTLENHRAKSPRSIFLFLS 156
>ref|XP_003353719.1| PREDICTED: torsin-2A-like [Sus scrofa].
Length = 223
Score = 119 bits (298), Expect = 3e-27
Identities = 51/124 (41%), Positives = 85/124 (68%)
Frame = +2
Query: 680 LSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDY 859
L+N G E+I VAL+ WRS + REEIRL+++E +S + +N + GFW S +++ +L+D
Sbjct: 99 LTNTGGEQINQVALEAWRSRRDREEIRLQELEPVVSQAVMDNPHHGFWRSGIMEEHLLDV 158
Query: 860 FVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTK 1039
VPFLPL+ H++ C+ E+ G E +++V V + TFFP++E++FS GCKTV ++
Sbjct: 159 LVPFLPLQRHHVRHCVLNELAHLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGCKTVASR 218
Query: 1040 LDYY 1051
+ ++
Sbjct: 219 IAFF 222
>ref|XP_003122389.1| PREDICTED: torsin family protein C9orf167-like [Sus scrofa].
Length = 415
Score = 66.6 bits (161), Expect = 2e-11
Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 15/279 (5%)
Frame = +2
Query: 239 EALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 418
+ L+K L +FGQ A I+ + +++ +PL L+LHG +G GK+ V +++A +
Sbjct: 141 DGLEKALQRAVFGQPSAVGRIVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH 200
Query: 419 IYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARS----IFIFDEMDK 586
+S V + A H P +++L + V+ + + DE++
Sbjct: 201 FRAVLEDSALVLQYDARHHCPDPRAAQDCREELAQRVADVVARAEAEEKTPLLVLDEVEL 260
Query: 587 MHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVAL-----------DFWR 733
+ L+D + +L + + AI++ LS AG +T L D
Sbjct: 261 LPQALLDELHGFLQPQRS---HHFHNAIYVLLSGAGGAEVTRFVLQNASRALALRPDGAH 317
Query: 734 SGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRV 913
+ + E + + A + W ++ I VPFL L+ + + C R
Sbjct: 318 GARAAAMAAQAEEELRVRLQALLVREHPLWQAAAI--------VPFLLLDKRDVVNCFRD 369
Query: 914 EMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTV 1030
EM G+ ++ +A ++++ R F+ GCK V
Sbjct: 370 EMAGEGFFPEQAHAELLAARLSYYRVAGREFAVTGCKQV 408
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,992,304
Number of extensions: 529621
Number of successful extensions: 1606
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1604
Number of HSP's successfully gapped: 9
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008427
(1077 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659133.1| torsin-1A precursor [Mus musculus]. 588 e-168
Alignment gi|NP_598434.2| torsin-1B precursor [Mus musculus]. 449 e-126
Alignment gi|NP_690013.1| torsin-2A precursor [Mus musculus]. 280 1e-75
Alignment gi|NP_075630.2| torsin-3A precursor [Mus musculus]. 246 2e-65
Alignment gi|NP_666227.2| torsin family protein C9orf167 homolog [Mus mus... 73 4e-13
>ref|NP_659133.1| torsin-1A precursor [Mus musculus].
Length = 333
Score = 588 bits (1517), Expect = e-168
Identities = 286/316 (90%), Positives = 300/316 (94%)
Frame = +2
Query: 113 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
VRAVEPISL LALAGVLT YISYPRL+C F ECC Q SLSREALQKDLD+KLFGQHLAK
Sbjct: 18 VRAVEPISLSLALAGVLTTYISYPRLYCLFAECCGQMRSLSREALQKDLDNKLFGQHLAK 77
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
KVILNAVSGF+SNPKPKKPLTLSLHGWTGTGKNF SKIIAENIYEGGLNSDYVHLFVATL
Sbjct: 78 KVILNAVSGFLSNPKPKKPLTLSLHGWTGTGKNFASKIIAENIYEGGLNSDYVHLFVATL 137
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPH SNIT YKDQLQ WIRGNVSACARSIFIFDEMDKMHAGLIDAIKP+LDYYD +D V
Sbjct: 138 HFPHASNITQYKDQLQMWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEV 197
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SYQKAIFIFLSNAGAERITDVALDFW+SGKQREEI+LRDME AL+VS FNNKNSGFWHSS
Sbjct: 198 SYQKAIFIFLSNAGAERITDVALDFWKSGKQREEIKLRDMEPALAVSVFNNKNSGFWHSS 257
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYE+DEDI+SKVAEEMTFFPKEE+VFS+
Sbjct: 258 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEVDEDIISKVAEEMTFFPKEEKVFSD 317
Query: 1013 QGCKTVFTKLDYYYND 1060
+GCKTVFTKLDYY +D
Sbjct: 318 KGCKTVFTKLDYYLDD 333
>ref|NP_598434.2| torsin-1B precursor [Mus musculus].
Length = 336
Score = 449 bits (1156), Expect = e-126
Identities = 202/313 (64%), Positives = 263/313 (84%), Gaps = 2/313 (0%)
Frame = +2
Query: 119 AVEPISLGLALAGV--LTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
A EP+S+G+A+ V LTGY+SY +C FTECC ++ L+ AL+ DL+ KLFGQHLA
Sbjct: 24 AFEPVSVGIAIGAVSALTGYLSYTDFYCRFTECCHEERPLNTSALKLDLEEKLFGQHLAT 83
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
+VIL A++GF +N KKPLTLSLHGW GTGKNF+S+I+AEN+Y GL S++VHLFV+TL
Sbjct: 84 EVILKALTGFRNNKNSKKPLTLSLHGWAGTGKNFISQIVAENLYPKGLKSNFVHLFVSTL 143
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPH I +Y+DQLQ WIRGNVSAC S+FIFDEMDK+H G+IDAIKP+LDYY+ +DG+
Sbjct: 144 HFPHEQKIKVYQDQLQKWIRGNVSACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGI 203
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SY++AIFIFLSNAG + IT ALDFWR+G++REEI+L+D+E LSV FNNK+SG WHS
Sbjct: 204 SYRRAIFIFLSNAGGDLITKTALDFWRAGRKREEIQLKDLEPVLSVGVFNNKHSGLWHSG 263
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LID+NLIDYF+PFLPLEYKH+KMC+R EM++RG +DED+V+ VA+EMTFFPK+E+++S+
Sbjct: 264 LIDKNLIDYFIPFLPLEYKHVKMCVRAEMRARGAAVDEDVVTSVADEMTFFPKDEKIYSD 323
Query: 1013 QGCKTVFTKLDYY 1051
+GCKTV ++LD++
Sbjct: 324 KGCKTVQSRLDFH 336
>ref|NP_690013.1| torsin-2A precursor [Mus musculus].
Length = 321
Score = 280 bits (716), Expect = 1e-75
Identities = 133/305 (43%), Positives = 201/305 (65%)
Frame = +2
Query: 137 LGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAKKVILNAVS 316
LGLALA ++ R C F C L+ DL L GQHLAK +++ ++
Sbjct: 18 LGLALAAAAAWDVASLR--CTFGSFCECDFWPDLPGLECDLAQHLAGQHLAKALVVKSLK 75
Query: 317 GFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNI 496
F+ +P P KPL LSLHGWTGTGK++VS ++A++++ GL S +VH F +HFPH S
Sbjct: 76 AFVQDPAPSKPLVLSLHGWTGTGKSYVSSLLAQHLFRDGLRSPHVHHFSPIIHFPHPSRT 135
Query: 497 TLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFI 676
YK +L+SW++GN++AC RS+F+FDEMDK+ GL++ ++P+L + G +Y+KAIFI
Sbjct: 136 EQYKKELKSWVQGNLTACGRSLFLFDEMDKLPPGLMEVLQPFLGPSWVVYGTNYRKAIFI 195
Query: 677 FLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLID 856
F+SNAG E+I VAL+ WRS + REEI L+++E +S + +N GFW S +++ +L+D
Sbjct: 196 FISNAGGEQINQVALEAWRSHRDREEISLQEVEPVISRAVMDNPQHGFWRSGIMEEHLLD 255
Query: 857 YFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFT 1036
VPFLPL+ H++ C+ E+ G E E++V V + T+FP+ E++FS GCKTV +
Sbjct: 256 AVVPFLPLQRHHVRHCVLNELAQLGLEPSEEVVQAVLDSTTYFPEVEQLFSSNGCKTVAS 315
Query: 1037 KLDYY 1051
+L ++
Sbjct: 316 RLTFF 320
>ref|NP_075630.2| torsin-3A precursor [Mus musculus].
Length = 385
Score = 246 bits (629), Expect = 2e-65
Identities = 125/320 (39%), Positives = 194/320 (60%), Gaps = 10/320 (3%)
Frame = +2
Query: 122 VEPISLGLALAG-----VLTGYISYPRLFCFFTECCSQKG----SLSREALQKDLDSKLF 274
V P+ L L G VLT ++ C F +CCS G S + L+ DL +L
Sbjct: 70 VPPLGWSLPLWGRRSLDVLTAWL------CRFQDCCSGGGDCRISNNLTGLESDLRVRLH 123
Query: 275 GQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVH 454
GQHLA K++L AV G++ P+ K L LS HGW+GTGKNF+++I+ +N+Y G+ SD V
Sbjct: 124 GQHLASKLVLRAVKGYLEMPQVGKALALSFHGWSGTGKNFLARILMDNLYRDGMRSDCVK 183
Query: 455 LFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLD-Y 631
+F++T HFPH + YK++LQ ++ C +S F+FDE +K+H GL++ ++PYL+
Sbjct: 184 MFISTFHFPHPKYVDTYKEELQRQMQETQWRCHQSTFVFDEAEKLHPGLLELLEPYLEPR 243
Query: 632 YDNLDGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKN 811
GV +AIF+FLSN G I +V L ++G REEI + +E L +
Sbjct: 244 SPEARGVEAPRAIFLFLSNLGGSVINEVVLSLLKAGWSREEITTQHLEVPLQAEIMEAAD 303
Query: 812 SGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPK 991
S F S L+ ++LID+F+PFLPLEY H+++C+R + E+ + ++A+ MT+ P+
Sbjct: 304 SSFGSSGLLKKHLIDHFIPFLPLEYCHVRLCVRDAFLGQDLPYTEETLDEIAKMMTYVPE 363
Query: 992 EERVFSEQGCKTVFTKLDYY 1051
EER+FS QGCK++ +++ +
Sbjct: 364 EERLFSSQGCKSISQRINLF 383
>ref|NP_666227.2| torsin family protein C9orf167 homolog [Mus musculus].
Length = 426
Score = 72.8 bits (177), Expect = 4e-13
Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 14/283 (4%)
Frame = +2
Query: 239 EALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 418
+ L+K L +FGQ A I+ + +++ PL L+LHG +G GK+ V +++A +
Sbjct: 146 DGLEKALQRSVFGQPAAVGRIMALLRDYLATHVHSHPLLLALHGPSGVGKSHVGRLLARH 205
Query: 419 IYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARS----IFIFDEMDK 586
+ V + A H P + + +L + V+ + + DE +
Sbjct: 206 FRAVLEDGALVLQYHARYHCPEPRPVQDCRKELAQRVADVVAQAEAEEKTPLLVLDEAEL 265
Query: 587 MHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALD----------FWRS 736
+ L+D + D + AI++ LS AG IT L
Sbjct: 266 LPPALLDELH---DLLQPQRSHHFHNAIYVLLSGAGGIEITHFVLQNASRMLPPLRHSAG 322
Query: 737 GKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVE 916
Q EE +++ S+ + WH++ I VPFL L+ + C R E
Sbjct: 323 STQTEESPAQEL--LTSLRELLAREHPLWHTAAI--------VPFLLLDKPDVVNCFREE 372
Query: 917 MQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLD 1045
M G+ ++ + +AE+++++ F+ GCK V K++
Sbjct: 373 MAGEGFFPEQALAEHLAEQLSYYHVAGHEFAITGCKQVVAKVN 415
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,840,605
Number of extensions: 716272
Number of successful extensions: 2150
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2138
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008427
(1077 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000104.1| torsin-1A precursor [Homo sapiens]. 595 e-170
Alignment gi|NP_055321.1| torsin-1B precursor [Homo sapiens]. 452 e-127
Alignment gi|NP_001078816.1| prosalusin isoform a [Homo sapiens]. 273 2e-73
Alignment gi|NP_071766.2| torsin-3A precursor [Homo sapiens]. 251 8e-67
Alignment gi|NP_569726.2| prosalusin isoform b [Homo sapiens]. 167 2e-41
Alignment gi|NP_001127902.1| prosalusin isoform c [Homo sapiens]. 167 2e-41
Alignment gi|NP_060193.2| torsin family protein C9orf167 [Homo sapiens]. 77 4e-14
>ref|NP_000104.1| torsin-1A precursor [Homo sapiens].
Length = 332
Score = 595 bits (1533), Expect = e-170
Identities = 289/316 (91%), Positives = 304/316 (96%)
Frame = +2
Query: 113 VRAVEPISLGLALAGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHLAK 292
V+AVEPISLGLALAGVLTGYI YPRL+C F ECC QK SLSREALQKDLD LFGQHLAK
Sbjct: 18 VQAVEPISLGLALAGVLTGYI-YPRLYCLFAECCGQKRSLSREALQKDLDDNLFGQHLAK 76
Query: 293 KVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 472
K+ILNAV GFI+NPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL
Sbjct: 77 KIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATL 136
Query: 473 HFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGV 652
HFPH SNITLYKDQLQ WIRGNVSACARSIFIFDEMDKMHAGLIDAIKP+LDYYD +DGV
Sbjct: 137 HFPHASNITLYKDQLQLWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGV 196
Query: 653 SYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSS 832
SYQKA+FIFLSNAGAERITDVALDFWRSGKQRE+I+L+D+EHALSVS FNNKNSGFWHSS
Sbjct: 197 SYQKAMFIFLSNAGAERITDVALDFWRSGKQREDIKLKDIEHALSVSVFNNKNSGFWHSS 256
Query: 833 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSE 1012
LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVS+VAEEMTFFPKEERVFS+
Sbjct: 257 LIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSRVAEEMTFFPKEERVFSD 316
Query: 1013 QGCKTVFTKLDYYYND 1060
+GCKTVFTKLDYYY+D
Sbjct: 317 KGCKTVFTKLDYYYDD 332
>ref|NP_055321.1| torsin-1B precursor [Homo sapiens].
Length = 336
Score = 452 bits (1163), Expect = e-127
Identities = 206/315 (65%), Positives = 266/315 (84%), Gaps = 2/315 (0%)
Frame = +2
Query: 113 VRAVEPISLGLAL--AGVLTGYISYPRLFCFFTECCSQKGSLSREALQKDLDSKLFGQHL 286
V A EPI++GLA+ A +TGY+SY ++C F ECC ++ L+ AL+ DL+ KLFGQHL
Sbjct: 22 VAAFEPITVGLAIGAASAITGYLSYNDIYCRFAECCREERPLNASALKLDLEEKLFGQHL 81
Query: 287 AKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVA 466
A +VI A++GF +N PKKPLTLSLHGW GTGKNFVS+I+AEN++ GL S++VHLFV+
Sbjct: 82 ATEVIFKALTGFRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHPKGLKSNFVHLFVS 141
Query: 467 TLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLD 646
TLHFPH I LY+DQLQ WIRGNVSACA S+FIFDEMDK+H G+IDAIKP+LDYY+ +D
Sbjct: 142 TLHFPHEQKIKLYQDQLQKWIRGNVSACANSVFIFDEMDKLHPGIIDAIKPFLDYYEQVD 201
Query: 647 GVSYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWH 826
GVSY+KAIFIFLSNAG + IT ALDFWR+G++RE+I+L+D+E LSV FNNK+SG WH
Sbjct: 202 GVSYRKAIFIFLSNAGGDLITKTALDFWRAGRKREDIQLKDLEPVLSVGVFNNKHSGLWH 261
Query: 827 SSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVF 1006
S LID+NLIDYF+PFLPLEY+H+KMC+R EM++RG IDEDIV++VAEEMTFFP++E+++
Sbjct: 262 SGLIDKNLIDYFIPFLPLEYRHVKMCVRAEMRARGSAIDEDIVTRVAEEMTFFPRDEKIY 321
Query: 1007 SEQGCKTVFTKLDYY 1051
S++GCKTV ++LD++
Sbjct: 322 SDKGCKTVQSRLDFH 336
>ref|NP_001078816.1| prosalusin isoform a [Homo sapiens].
Length = 321
Score = 273 bits (698), Expect = 2e-73
Identities = 125/269 (46%), Positives = 189/269 (70%)
Frame = +2
Query: 245 LQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIY 424
L+ DL L GQHLAK +++ A+ F+ +P P KPL LSLHGWTGTGK++VS ++A ++
Sbjct: 52 LECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLF 111
Query: 425 EGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLI 604
+GGL S VH F LHFPH S+I YK L+SW++GN++AC RS+F+FDEMDKM GL+
Sbjct: 112 QGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLM 171
Query: 605 DAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDFWRSGKQREEIRLRDMEHAL 784
+ ++P+L + G +Y+KAIFIF+SN G E+I VAL+ WRS + REEI L+++E +
Sbjct: 172 EVLRPFLGSSWVVYGTNYRKAIFIFISNTGGEQINQVALEAWRSRRDREEILLQELEPVI 231
Query: 785 SVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSKV 964
S + +N + GF +S +++ L+D VPFLPL+ H++ C+ E+ G E +++V V
Sbjct: 232 SRAVLDNPHHGFSNSGIMEERLLDAVVPFLPLQRHHVRHCVLNELAQLGLEPRDEVVQAV 291
Query: 965 AEEMTFFPKEERVFSEQGCKTVFTKLDYY 1051
+ TFFP++E++FS GCKTV +++ ++
Sbjct: 292 LDSTTFFPEDEQLFSSNGCKTVASRIAFF 320
>ref|NP_071766.2| torsin-3A precursor [Homo sapiens].
Length = 397
Score = 251 bits (641), Expect = 8e-67
Identities = 120/292 (41%), Positives = 188/292 (64%), Gaps = 5/292 (1%)
Frame = +2
Query: 191 FCFFTECCSQ---KGSLSREALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLS 361
+C F +CC + + S + L+ DL+ +L GQHL ++++L V G++ P+P+K L LS
Sbjct: 105 YCSFKDCCPRGDCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALS 164
Query: 362 LHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNV 541
HGW+GTGKNFV++++ EN+Y GL SD V +F+AT HFPH + LYK+QL S IR
Sbjct: 165 FHGWSGTGKNFVARMLVENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQ 224
Query: 542 SACARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQK--AIFIFLSNAGAERITDV 715
C +++FIFDE +K+H GL++ + P+L+ +G + IF+FLSN + I +V
Sbjct: 225 QLCHQTLFIFDEAEKLHPGLLEVLGPHLERRAP-EGHRAESPWTIFLFLSNLRGDIINEV 283
Query: 716 ALDFWRSGKQREEIRLRDMEHALSVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHL 895
L ++G REEI + +E L ++GF HS L+ NLIDYF+PFLPLEY+H+
Sbjct: 284 VLKLLKAGWSREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHV 343
Query: 896 KMCIRVEMQSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTVFTKLDYY 1051
++C R S+ E+ + ++A+ M + PKEE++FS QGCK++ +++Y+
Sbjct: 344 RLCARDAFLSQELLYKEETLDEIAQMMVYVPKEEQLFSSQGCKSISQRINYF 395
>ref|NP_569726.2| prosalusin isoform b [Homo sapiens].
Length = 253
Score = 167 bits (423), Expect = 2e-41
Identities = 76/146 (52%), Positives = 107/146 (73%)
Frame = +2
Query: 245 LQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIY 424
L+ DL L GQHLAK +++ A+ F+ +P P KPL LSLHGWTGTGK++VS ++A ++
Sbjct: 52 LECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLF 111
Query: 425 EGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLI 604
+GGL S VH F LHFPH S+I YK L+SW++GN++AC RS+F+FDEMDKM GL+
Sbjct: 112 QGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLM 171
Query: 605 DAIKPYLDYYDNLDGVSYQKAIFIFL 682
+ ++P+L + G +Y+KAIFIF+
Sbjct: 172 EVLRPFLGSSWVVYGTNYRKAIFIFI 197
>ref|NP_001127902.1| prosalusin isoform c [Homo sapiens].
Length = 242
Score = 167 bits (423), Expect = 2e-41
Identities = 76/146 (52%), Positives = 107/146 (73%)
Frame = +2
Query: 245 LQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIY 424
L+ DL L GQHLAK +++ A+ F+ +P P KPL LSLHGWTGTGK++VS ++A ++
Sbjct: 52 LECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLF 111
Query: 425 EGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARSIFIFDEMDKMHAGLI 604
+GGL S VH F LHFPH S+I YK L+SW++GN++AC RS+F+FDEMDKM GL+
Sbjct: 112 QGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLM 171
Query: 605 DAIKPYLDYYDNLDGVSYQKAIFIFL 682
+ ++P+L + G +Y+KAIFIF+
Sbjct: 172 EVLRPFLGSSWVVYGTNYRKAIFIFI 197
>ref|NP_060193.2| torsin family protein C9orf167 [Homo sapiens].
Length = 423
Score = 76.6 bits (187), Expect = 4e-14
Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 13/277 (4%)
Frame = +2
Query: 239 EALQKDLDSKLFGQHLAKKVILNAVSGFISNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 418
+ L+K L +FGQ A I+ + +++ +PL L+LHG +G GK+ V +++A +
Sbjct: 151 DGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH 210
Query: 419 IYEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSACARS----IFIFDEMDK 586
+S V + A H P +++L + V+ + + D+++
Sbjct: 211 FRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVEL 270
Query: 587 MHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERIT-------DVALDFWRSGKQ 745
M L+D + +L + + AI++ LS AG +T AL G +
Sbjct: 271 MPRPLLDELHGFLQPQRS---HHFHNAIYVLLSGAGGAEVTRFVLQNASRALPLRPDGFR 327
Query: 746 REEIRLRDMEHAL--SVSAFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEM 919
E E L S+ A ++ W ++ I VPFL L+ + + C R EM
Sbjct: 328 SAEAAAAQAEEDLRASLLAVLSREHPLWQAAAI--------VPFLLLDKRDVVSCFRDEM 379
Query: 920 QSRGYEIDEDIVSKVAEEMTFFPKEERVFSEQGCKTV 1030
G+ D+ +A +++F+ R F+ GCK V
Sbjct: 380 AGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQV 416
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,075,067
Number of extensions: 845968
Number of successful extensions: 2288
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2284
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008427
(1077 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 531 e-148
>Sscrofa_Chr01
|| Length = 315321322
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Minus
Query: 242 gcgctgcagaaggatctggacagcaagcttttcggacagcatcttgcaaagaaagtcatc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303881964 gcgctgcagaaggatctggacagcaagcttttcggacagcatcttgcaaagaaagtcatc 303881905
Query: 302 ttaaatgccgtctcaggcttcatcagcaacccgaagcccaagaagccgctcaccctctcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303881904 ttaaatgccgtctcaggcttcatcagcaacccgaagcccaagaagccgctcaccctctcc 303881845
Query: 362 ctacacgggtggacgggcaccggcaaaaattttgtcagcaagatcatcgcagagaatatt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303881844 ctacacgggtggacgggcaccggcaaaaattttgtcagcaagatcatcgcagagaatatt 303881785
Query: 422 tacgagggtggtctgaacagtgactatgtccacctgtttgtggccacactgcacttcccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303881784 tacgagggtggtctgaacagtgactatgtccacctgtttgtggccacactgcacttcccc 303881725
Query: 482 cacatctccaacatcaccctgtacaagg 509
||||||||||||||||||||||||||||
Sbjct: 303881724 cacatctccaacatcaccctgtacaagg 303881697
Score = 490 bits (247), Expect = e-136
Identities = 259/263 (98%)
Strand = Plus / Minus
Query: 813 gtggcttctggcacagcagcttaattgaccgaaatctcattgattattttgttcccttcc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303873469 gtggcttctggcacagcagcttaattgaccgaaatctcattgattattttgttcccttcc 303873410
Query: 873 tgcccctggaatacaaacacctaaaaatgtgcatcagagtcgaaatgcagtcccgaggct 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303873409 tgcccctggaatacaaacacctaaaaatgtgcatcagagtcgaaatgcagtcccgaggct 303873350
Query: 933 acgagattgacgaggacattgtgagcaaagtggccgaggagatgacgtttttccccaaag 992
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303873349 acgaggttgacgaggacattgtgagcaaagtggccgaggagatgacgtttttccccaaag 303873290
Query: 993 aggagagagttttctcggaacaaggctgcaaaactgtgttcaccaagttggattattact 1052
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 303873289 aggagagagttttctcggacaaaggctgcaaaactgtgttcaccaagttggattattact 303873230
Query: 1053 acaatgattgatggattgctggc 1075
|| ||||||||||||||||||||
Sbjct: 303873229 acgatgattgatggattgctggc 303873207
Score = 480 bits (242), Expect = e-133
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 1 gttggcggtagcgccgatccgcggtaggcgcgagaacgcgccgggcagcgccggtctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303882845 gttggcggtagcgccgatccgcggtaggcgcgagaacgcgccgggcagcgccggtctggg 303882786
Query: 61 catgaagctgggccgggccgcgctgggcctgctgctgctggcgccgttggcggtgcgggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303882785 catgaagctgggccgggccgcgctgggcctgctgctgctggcgccgttggcggtgcgggc 303882726
Query: 121 ggtagagcccatcagtctgggactggccctggccggcgtcctcaccggctacatctccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303882725 ggtagagcccatcagtctgggactggccctggccggcgtcctcaccggctacatctccta 303882666
Query: 181 cccgcgcctcttctgcttcttcaccgagtgctgcagccagaaggggagcctcagccggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303882665 cccgcgcctcttctgcttcttcaccgagtgctgcagccagaaggggagcctcagccggga 303882606
Query: 241 gg 242
||
Sbjct: 303882605 gg 303882604
Score = 345 bits (174), Expect = 3e-92
Identities = 177/178 (99%)
Strand = Plus / Minus
Query: 507 aggatcagttacagtcgtggatccgcggcaacgtgagtgcctgtgccaggtccatcttca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303878498 aggatcagttacagtcgtggatccgcggcaacgtgagtgcctgtgccaggtccatcttca 303878439
Query: 567 tatttgacgaaatggataagatgcacgctggcctcatagacgccatcaagccctacctgg 626
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 303878438 tatttgacgaaatggataagatgcacgctggcctcatagacgccatcaagccttacctgg 303878379
Query: 627 actattacgacaacctggacggggtctcctatcagaaagccatcttcatttttctcag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303878378 actattacgacaacctggacggggtctcctatcagaaagccatcttcatttttctcag 303878321
Score = 248 bits (125), Expect = 5e-63
Identities = 131/133 (98%)
Strand = Plus / Minus
Query: 682 cagcaatgctggcgccgagaggatcacagacgtggctttagatttctggagaagtgggaa 741
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 303878218 cagcaatgctggcgccgagaggatcacagacgtggctttagatttctggagaagcgggaa 303878159
Query: 742 gcagcgggaagaaatcagactgagagacatggagcacgcgctgtctgtgtcggccttcaa 801
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 303878158 gcagcgggaagaaatcaggctgagagacatggagcacgcgctgtctgtgtcggccttcaa 303878099
Query: 802 caacaagaacagt 814
|||||||||||||
Sbjct: 303878098 caacaagaacagt 303878086
Score = 60.0 bits (30), Expect = 3e-06
Identities = 105/130 (80%)
Strand = Plus / Plus
Query: 507 aggatcagttacagtcgtggatccgcggcaacgtgagtgcctgtgccaggtccatcttca 566
|||| ||||||||| |||||| || ||||||||||| |||||||||| || | ||||
Sbjct: 303867592 aggaccagttacagaggtggattcggggcaacgtgagcgcctgtgccaactctgtgttca 303867651
Query: 567 tatttgacgaaatggataagatgcacgctggcctcatagacgccatcaagccctacctgg 626
| ||||| || ||||||||| ||||| | || ||||| || || |||||||| | |||||
Sbjct: 303867652 tctttgatgagatggataagttgcacccggggctcattgatgcgatcaagccgttcctgg 303867711
Query: 627 actattacga 636
| || |||||
Sbjct: 303867712 attactacga 303867721
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 941 gacgaggacattgtgagcaaagtggccgaggagatgacgtttttccccaaagaggaga 998
|||||||||||||| | ||| ||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 303869147 gacgaggacattgtcaccaaggtggcagaggaaatgacatttttccccaaagacgaga 303869204
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,891,090
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 7
Length of query: 1077
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1056
Effective length of database: 2,808,413,156
Effective search space: 2965684292736
Effective search space used: 2965684292736
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)