Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008432
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698403.1| PREDICTED: interferon-induced protein with t... 390 e-108
Alignment gi|XP_001787879.1| PREDICTED: interferon-induced protein with t... 390 e-108
Alignment gi|NP_001069166.1| interferon-induced protein with tetratricope... 275 4e-74
Alignment gi|NP_001068882.1| interferon-induced protein with tetratricope... 261 5e-70
Alignment gi|XP_001787875.1| PREDICTED: interferon-induced protein with t... 246 2e-66
Alignment gi|XP_002698402.1| PREDICTED: interferon-induced protein with t... 245 2e-66
>ref|XP_002698403.1| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 5-like [Bos taurus].
Length = 478
Score = 390 bits (1001), Expect = e-108
Identities = 192/271 (70%), Positives = 219/271 (80%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MS ADEDQ+KDKL L+CHFTW+++I +TEIPDLENRVLEEI FLD KYNVGI+NLLAY
Sbjct: 1 MSYKADEDQLKDKLLLLRCHFTWDMIIAETEIPDLENRVLEEIMFLDIKYNVGIYNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHL+GQNE ALKSL+ AEDL+QQEH +QSEVR LVTWGNYAWL+Y ++AEAQIYLDK
Sbjct: 61 VKHLRGQNEEALKSLQKAEDLSQQEHANQSEVRSLVTWGNYAWLHYHMGQQAEAQIYLDK 120
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
VK+TCRKL N SSYRM CPQMDCEEGWALLKCGGKNYERAKVCF+KALE DPENPEFSTG
Sbjct: 121 VKNTCRKLGNSSSYRMACPQMDCEEGWALLKCGGKNYERAKVCFEKALEVDPENPEFSTG 180
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAI +YRL+ NK A FCLN LKQAV+LNP DAYIKAL L+L ++ E EGEKYI
Sbjct: 181 YAIVVYRLEGFNK-AQISAEFCLNTLKQAVKLNPNDAYIKALLGLKLQDVEQEAEGEKYI 239
Query: 902 KEALTKESQRPTSSDMQSSFTEERALWMKAL 994
KEALT S + + F + + +AL
Sbjct: 240 KEALTNASSKAYVFRYAAKFYRRKGVLDEAL 270
>ref|XP_001787879.1| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 5-like [Bos taurus].
Length = 478
Score = 390 bits (1001), Expect = e-108
Identities = 192/271 (70%), Positives = 219/271 (80%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MS ADEDQ+KDKL L+CHFTW+++I +TEIPDLENRVLEEI FLD KYNVGI+NLLAY
Sbjct: 1 MSYKADEDQLKDKLLLLRCHFTWDMIIAETEIPDLENRVLEEIMFLDIKYNVGIYNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHL+GQNE ALKSL+ AEDL+QQEH +QSEVR LVTWGNYAWL+Y ++AEAQIYLDK
Sbjct: 61 VKHLRGQNEEALKSLQKAEDLSQQEHANQSEVRSLVTWGNYAWLHYHMGQQAEAQIYLDK 120
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
VK+TCRKL N SSYRM CPQMDCEEGWALLKCGGKNYERAKVCF+KALE DPENPEFSTG
Sbjct: 121 VKNTCRKLGNSSSYRMACPQMDCEEGWALLKCGGKNYERAKVCFEKALEVDPENPEFSTG 180
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAI +YRL+ NK A FCLN LKQAV+LNP DAYIKAL L+L ++ E EGEKYI
Sbjct: 181 YAIVVYRLEGFNK-AQISAEFCLNTLKQAVKLNPNDAYIKALLGLKLQDVEQEAEGEKYI 239
Query: 902 KEALTKESQRPTSSDMQSSFTEERALWMKAL 994
KEALT S + + F + + +AL
Sbjct: 240 KEALTNASSKAYVFRYAAKFYRRKGVLDEAL 270
>ref|NP_001069166.1| interferon-induced protein with tetratricopeptide repeats 5 [Bos
taurus].
Length = 482
Score = 275 bits (704), Expect = 4e-74
Identities = 133/265 (50%), Positives = 190/265 (71%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
+D +K L +L+CHFTW L+ +D ++ D+E+ + +++EFL TK + ++NLLAYVKHLKG
Sbjct: 6 KDCLKTILLELECHFTWNLLKEDIDLFDVEDTIGQQLEFLTTKSRLTLYNLLAYVKHLKG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
QNE ALK LK AE++ ++EH+D+ VR LVTWGNYAW+YY + EAQ Y+ K+ C+
Sbjct: 66 QNEDALKCLKQAEEIIRREHSDKEGVRSLVTWGNYAWVYYDMGQLKEAQKYIGKIGSVCK 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
L++PS Y++E P++DCE+GWALLK GGK Y++AK F+KALEA+P+NPEF+ GYAIT+Y
Sbjct: 126 TLSSPSDYKLERPEIDCEKGWALLKFGGKYYQKAKAAFEKALEAEPDNPEFNIGYAITVY 185
Query: 740 RLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTK 919
RLD ++ G F L L++AV LNP+++YIK AL+L ++ E EGEKYI+E L +
Sbjct: 186 RLDDSDR-EGSIKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQ 244
Query: 920 ESQRPTSSDMQSSFTEERALWMKAL 994
S +P + F + W KAL
Sbjct: 245 ISAQPYVLRYAAKFYRRKNSWDKAL 269
>ref|NP_001068882.1| interferon-induced protein with tetratricopeptide repeats 3 [Bos
taurus].
Length = 485
Score = 261 bits (668), Expect = 5e-70
Identities = 130/241 (53%), Positives = 169/241 (70%)
Frame = +2
Query: 197 DEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLK 376
D++ ++ L QL+CHFTW L + + DLE+RV + EFL++++ +NLLAY+KHLK
Sbjct: 4 DKNSLEQILPQLRCHFTWNLFKKGSVSHDLEDRVCNQTEFLNSEFKATKYNLLAYIKHLK 63
Query: 377 GQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTC 556
GQNE AL+ L+ AE+ Q+EHTDQ+EVR LVTWGNYAW+YY R A+AQ+Y DKVK C
Sbjct: 64 GQNEAALECLRQAEEWIQREHTDQAEVRSLVTWGNYAWVYYHLGRFADAQLYADKVKRVC 123
Query: 557 RKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITI 736
+K ANP Y +ECP++DCEEGW L+KCGGK ERAKV F+KALE P NPEFS+G AI +
Sbjct: 124 QKFANP--YSIECPELDCEEGWTLVKCGGKKIERAKVYFQKALEEKPNNPEFSSGLAIAM 181
Query: 737 YRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALT 916
Y LD + L LKQAV L+P++ YIK L AL L + + EGE+ + EAL
Sbjct: 182 YYLDDRPEQQS-----SLEILKQAVELSPDNQYIKVLLALTLQKTNEQSEGEQLVVEALE 236
Query: 917 K 919
K
Sbjct: 237 K 237
>ref|XP_001787875.1| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 2 [Bos taurus].
Length = 463
Score = 246 bits (627), Expect(2) = 2e-66
Identities = 115/240 (47%), Positives = 171/240 (71%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
++ ++ L+QLK HFTW LV + + D E+RV + EF ++++ + N+ A++KH +G
Sbjct: 6 KNSLEHSLQQLKSHFTWNLVEGEHSLDDFEDRVCHQTEFQNSEFKATMCNIQAFIKHCRG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
Q++ AL+ L+ AE+ Q+EH DQ+EVR LVTWGN+AW+YY R A+AQ+Y+DKVK C+
Sbjct: 66 QHQAALECLRQAEEFIQREHADQAEVRSLVTWGNHAWVYYHLGRFADAQLYVDKVKRVCQ 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
K ++P YR+E P++DCEEGW LKCG ERAKVCF+KALE +P+NPEF++G AI Y
Sbjct: 126 KFSSP--YRIESPELDCEEGWTRLKCGRNQNERAKVCFEKALEKNPKNPEFASGLAIASY 183
Query: 740 RLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTK 919
RLD+ +N L+QA++LNP++ Y+K L AL+L ++ +DEGE+ ++EAL K
Sbjct: 184 RLDNQPPSQN-----PINPLRQAIQLNPDNQYVKVLLALKLQKMNKKDEGERLVEEALEK 238
Score = 26.2 bits (56), Expect(2) = 2e-66
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 931 TYVFRHAVKFYRRKGSLD 984
T V R A K YRRKG LD
Sbjct: 243 TDVIRGAAKLYRRKGDLD 260
>ref|XP_002698402.1| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 2 [Bos taurus].
Length = 463
Score = 245 bits (626), Expect(2) = 2e-66
Identities = 115/240 (47%), Positives = 171/240 (71%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
++ ++ L+QLK HFTW LV + + D E+RV + EF ++++ + N+ A++KH +G
Sbjct: 6 KNSLEHSLQQLKSHFTWNLVEGEHSLDDFEDRVCHQTEFQNSEFKATMCNIQAFIKHRRG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
Q++ AL+ L+ AE+ Q+EH DQ+EVR LVTWGN+AW+YY R A+AQ+Y+DKVK C+
Sbjct: 66 QHQAALECLRQAEEFIQREHADQAEVRSLVTWGNHAWVYYHLGRFADAQLYVDKVKRVCQ 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
K ++P YR+E P++DCEEGW LKCG ERAKVCF+KALE +P+NPEF++G AI Y
Sbjct: 126 KFSSP--YRIESPELDCEEGWTRLKCGRNQNERAKVCFEKALEKNPKNPEFASGLAIASY 183
Query: 740 RLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTK 919
RLD+ +N L+QA++LNP++ Y+K L AL+L ++ +DEGE+ ++EAL K
Sbjct: 184 RLDNQPPSQN-----PINPLRQAIQLNPDNQYVKVLLALKLQKMNKKDEGERLVEEALEK 238
Score = 26.2 bits (56), Expect(2) = 2e-66
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 931 TYVFRHAVKFYRRKGSLD 984
T V R A K YRRKG LD
Sbjct: 243 TDVIRGAAKLYRRKGDLD 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,895,369
Number of extensions: 957670
Number of successful extensions: 2591
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2581
Number of HSP's successfully gapped: 8
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008432
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848364.1| PREDICTED: similar to interferon-induced protei... 370 e-102
Alignment gi|XP_543917.2| PREDICTED: similar to Interferon-induced protei... 283 2e-76
Alignment gi|XP_848342.1| PREDICTED: similar to interferon-induced protei... 261 6e-70
Alignment gi|XP_536324.2| PREDICTED: similar to interferon-induced protei... 234 2e-62
Alignment gi|XP_848320.1| PREDICTED: similar to interferon-induced protei... 134 5e-33
>ref|XP_848364.1| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 1 isoform 1 [Canis
familiaris].
Length = 480
Score = 370 bits (950), Expect = e-102
Identities = 184/271 (67%), Positives = 207/271 (76%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MS N DE IKDKL+QL+CHFTWEL+ +DTE+PDLENR+L+EIEFLDTKY GIHNLLAY
Sbjct: 1 MSKNMDE--IKDKLDQLRCHFTWELLFEDTEMPDLENRILDEIEFLDTKYKAGIHNLLAY 58
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHLKGQN+ AL+SLK+AEDL QQEH QS+VR LVTWGNYAWLYY R AEAQ YLDK
Sbjct: 59 VKHLKGQNQEALESLKEAEDLIQQEHDIQSDVRSLVTWGNYAWLYYHMGRLAEAQAYLDK 118
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
V++TC K A PS YRMECPQMD EEGWALLKCG KNYERAK CF+KAL DPENPEFSTG
Sbjct: 119 VENTCMKFAAPSCYRMECPQMDGEEGWALLKCGRKNYERAKACFEKALAEDPENPEFSTG 178
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAIT+YRLD LN FCL LK+A+RLNPED YIK L AL+L +L E +GEKYI
Sbjct: 179 YAITMYRLDSLNMATETSEAFCLQPLKEAIRLNPEDVYIKVLLALKLQDLGQEADGEKYI 238
Query: 902 KEALTKESQRPTSSDMQSSFTEERALWMKAL 994
+EAL S + F + KAL
Sbjct: 239 EEALNNTSSQTYVFRYAGKFYRRKGCLDKAL 269
>ref|XP_543917.2| PREDICTED: similar to Interferon-induced protein with
tetratricopeptide repeats 5 (IFIT-5) (Retinoic acid- and
interferon-inducible 58 kDa protein) [Canis familiaris].
Length = 743
Score = 283 bits (723), Expect = 2e-76
Identities = 131/265 (49%), Positives = 195/265 (73%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
++ +K L +L+CHFTW L+ +D ++ D+E+ + +++EFL TK + ++NLLAYVKHLKG
Sbjct: 267 KESLKAILLELECHFTWNLLKEDIDLFDVEDTIGQQLEFLTTKSRLTLYNLLAYVKHLKG 326
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
QNE ALK L+ AE++ ++EH+D+ E+R LVTWGNYAW+YY + E+Q Y+DK+ + C+
Sbjct: 327 QNEDALKCLEQAEEIIRREHSDKEEIRSLVTWGNYAWVYYHMDQLKESQKYIDKIGNVCK 386
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
KL++PS+Y++ECP++DCE+GWALLK GGK Y++AK F+KALE +P+NPEF+ GYAIT+Y
Sbjct: 387 KLSSPSNYKLECPEIDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVY 446
Query: 740 RLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTK 919
RLD ++ G F L L++AV LNP+++YIK AL+L ++ E EGE+YI+E L +
Sbjct: 447 RLDDSDR-EGSIKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGERYIEEILDQ 505
Query: 920 ESQRPTSSDMQSSFTEERALWMKAL 994
S +P + F + W KAL
Sbjct: 506 ISSQPYVLRYAAKFYRRKNSWDKAL 530
>ref|XP_848342.1| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 1-like [Canis familiaris].
Length = 464
Score = 261 bits (668), Expect = 6e-70
Identities = 138/236 (58%), Positives = 159/236 (67%)
Frame = +2
Query: 287 ENRVLEEIEFLDTKYNVGIHNLLAYVKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRL 466
ENR+ FL +K G+ + +N+ AL+SLK+AEDL QQEH QS+VR L
Sbjct: 38 ENRIF----FLFSKQPTGLCEI--------SENQEALESLKEAEDLIQQEHDIQSDVRSL 85
Query: 467 VTWGNYAWLYYLTYRKAEAQIYLDKVKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGK 646
VTWGNYAWLYY R AEAQ YLDKV++TC K A PS YRMECPQMD EEGWALLKCG K
Sbjct: 86 VTWGNYAWLYYHMGRLAEAQAYLDKVENTCMKFAAPSCYRMECPQMDGEEGWALLKCGRK 145
Query: 647 NYERAKVCFKKALEADPENPEFSTGYAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPE 826
NYERAK CF+KAL DPENPEFSTGYAIT+YRLD LN FCL LK+A+RLNPE
Sbjct: 146 NYERAKACFEKALAEDPENPEFSTGYAITMYRLDSLNMATETSEAFCLQPLKEAIRLNPE 205
Query: 827 DAYIKALFALELSELXPEDEGEKYIKEALTKESQRPTSSDMQSSFTEERALWMKAL 994
D YIK L AL+L +L E +GEKYI+EAL S + F + KAL
Sbjct: 206 DVYIKVLLALKLQDLGQEADGEKYIEEALNNTSSQTYVFRYAGKFYRRKGCLDKAL 261
>ref|XP_536324.2| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 2 [Canis familiaris].
Length = 474
Score = 234 bits (596), Expect(2) = 2e-62
Identities = 115/235 (48%), Positives = 161/235 (68%)
Frame = +2
Query: 221 LEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKGQNEGALK 400
L QLKCHFTW LV + D E++V + EF + ++ + N+LAY+KH +G N+ AL+
Sbjct: 19 LWQLKCHFTWTLVDGGKSLDDFEDKVCDATEFQNNEFKATVFNILAYIKHRRGHNKAALE 78
Query: 401 SLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCRKLANPSS 580
L AE+L Q+EH+DQ+E+R LVTWGNYAW+YY R A+AQIY+DKV+ C K +P
Sbjct: 79 CLWQAEELIQREHSDQAEIRSLVTWGNYAWVYYHLGRFADAQIYVDKVRRVCEKSHSP-- 136
Query: 581 YRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIYRLDHLNK 760
Y +E P++D +EGWA L+CG K+ ERAKVCF+KALE +P+NPEF +G AI YRL+
Sbjct: 137 YSLESPELDFQEGWARLQCGRKHNERAKVCFEKALERNPKNPEFISGLAIASYRLETWPL 196
Query: 761 VAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTKES 925
+N L++A+RLNP++ Y+K L AL+L ++ E EGE I+E L + S
Sbjct: 197 PQN-----PINPLRRAIRLNPDNQYVKVLLALKLQKMKEEGEGESLIEEVLEETS 246
Score = 24.6 bits (52), Expect(2) = 2e-62
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 931 TYVFRHAVKFYRRKGSLDESSQFSKLA 1011
T V A K Y+RKG+LD++ + K A
Sbjct: 249 TDVLCGAAKLYQRKGALDKAVELLKKA 275
>ref|XP_848320.1| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 3 [Canis familiaris].
Length = 382
Score = 134 bits (337), Expect(2) = 5e-33
Identities = 69/133 (51%), Positives = 90/133 (67%)
Frame = +2
Query: 515 AEAQIYLDKVKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEAD 694
A+AQIY+DKV+ C K +NP Y +EC ++ CEEGW LKCG + ERAKVCF+KALE
Sbjct: 4 ADAQIYVDKVRQVCEKFSNP--YSIECSELYCEEGWTRLKCGANHNERAKVCFEKALEEK 61
Query: 695 PENPEFSTGYAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELX 874
P NPEF++G AI +Y LD NK P +N LKQA+ LN ++ YIK L AL+L +
Sbjct: 62 PNNPEFASGLAIAMYCLD--NKP---QKPVSINILKQALELNHDNQYIKVLLALKLQRMN 116
Query: 875 PEDEGEKYIKEAL 913
E +GE+ + EAL
Sbjct: 117 EEADGEQLVLEAL 129
Score = 25.8 bits (55), Expect(2) = 5e-33
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 928 KTYVFRHAVKFYRRKGSLDES 990
+T V R+A FY++KG LD++
Sbjct: 135 QTDVLRNAATFYQKKGDLDKA 155
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,477,069
Number of extensions: 982118
Number of successful extensions: 2772
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 7
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008432
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133190.1| PREDICTED: interferon-induced protein with t... 504 e-153
Alignment gi|XP_001928759.1| PREDICTED: interferon-induced protein with t... 504 e-153
Alignment gi|XP_001925987.2| PREDICTED: interferon-induced protein with t... 274 5e-74
Alignment gi|NP_001191324.1| interferon-induced protein with tetratricope... 257 6e-69
Alignment gi|XP_001928706.2| PREDICTED: interferon-induced protein with t... 241 3e-65
>ref|XP_003133190.1| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 1 isoform 2 [Sus scrofa].
Length = 478
Score = 504 bits (1299), Expect(2) = e-153
Identities = 244/250 (97%), Positives = 246/250 (98%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY
Sbjct: 1 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK
Sbjct: 61 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 120
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG
Sbjct: 121 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 180
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFAL+L EL EDEGEKYI
Sbjct: 181 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALKLQELGQEDEGEKYI 240
Query: 902 KEALTKESQR 931
KEALTKES +
Sbjct: 241 KEALTKESSK 250
Score = 57.4 bits (137), Expect(2) = e-153
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 925 SKTYVFRHAVKFYRRKGSLDESSQFSKLA 1011
SKTYVFRHAVKFYRRKGSLDE+ QFSKLA
Sbjct: 249 SKTYVFRHAVKFYRRKGSLDEALQFSKLA 277
>ref|XP_001928759.1| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 1 isoform 1 [Sus scrofa].
Length = 478
Score = 504 bits (1299), Expect(2) = e-153
Identities = 244/250 (97%), Positives = 246/250 (98%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY
Sbjct: 1 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK
Sbjct: 61 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 120
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG
Sbjct: 121 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 180
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFAL+L EL EDEGEKYI
Sbjct: 181 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALKLQELGQEDEGEKYI 240
Query: 902 KEALTKESQR 931
KEALTKES +
Sbjct: 241 KEALTKESSK 250
Score = 57.4 bits (137), Expect(2) = e-153
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 925 SKTYVFRHAVKFYRRKGSLDESSQFSKLA 1011
SKTYVFRHAVKFYRRKGSLDE+ QFSKLA
Sbjct: 249 SKTYVFRHAVKFYRRKGSLDEALQFSKLA 277
>ref|XP_001925987.2| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 5 [Sus scrofa].
Length = 482
Score = 274 bits (701), Expect = 5e-74
Identities = 130/265 (49%), Positives = 191/265 (72%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
+D +K L +L+CHFTW L+ +D ++ D+E+ + +++EFL TK + ++NLLAYVKHLKG
Sbjct: 6 KDSLKAILLELECHFTWNLLKEDIDLFDVEDTIGQQLEFLTTKSRLTLYNLLAYVKHLKG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
QN+ AL LK AE++ Q+EH+D+ EVR LVTWGNYAW+YY + E Q Y++KV + C+
Sbjct: 66 QNKDALDCLKQAEEIIQREHSDKEEVRSLVTWGNYAWVYYHMDQLKETQNYIEKVGNVCK 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
+ ++PS+Y++E P++DCE+GWALLK GGK Y++AK F++ALE +P+NPEF+ GYAIT+Y
Sbjct: 126 QFSSPSNYKLERPEIDCEKGWALLKFGGKYYQKAKAAFEQALEVEPDNPEFNIGYAITVY 185
Query: 740 RLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTK 919
RLD ++ G F L L++AV LNP+++YIK AL+L ++ E EGEKYI+E L +
Sbjct: 186 RLDDSDR-EGSIKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQ 244
Query: 920 ESQRPTSSDMQSSFTEERALWMKAL 994
S +P + F + W KAL
Sbjct: 245 ISSQPYVLRYAAKFYRRKNSWDKAL 269
>ref|NP_001191324.1| interferon-induced protein with tetratricopeptide repeats 3 [Sus
scrofa].
Length = 509
Score = 257 bits (657), Expect = 6e-69
Identities = 127/244 (52%), Positives = 173/244 (70%)
Frame = +2
Query: 188 NNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVK 367
+ +++ ++ L QLKCHFTW L ++ DLE+RV + E L++++ ++NLLAY+K
Sbjct: 2 SEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIK 61
Query: 368 HLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVK 547
HL GQNE AL+ L+ AE+ QQEHTDQ+E+R LVTWGNYAW+YY R +EAQIY+DKVK
Sbjct: 62 HLNGQNEAALEYLQQAEEFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVK 121
Query: 548 DTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYA 727
C K +NP Y +ECP++DCEEGW LLKCGGK E+AKV F+KALE P+NPEFS+G A
Sbjct: 122 QVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLA 179
Query: 728 ITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKE 907
I +Y L+ K A ++ LK+A+ L+P++ YIK L AL L ++ E EGE+ + E
Sbjct: 180 IAMYFLN--GKPAQQSS---VDILKEAIELSPDNQYIKVLLALTLQKMNEEAEGEELVVE 234
Query: 908 ALTK 919
AL K
Sbjct: 235 ALEK 238
>ref|XP_001928706.2| PREDICTED: interferon-induced protein with tetratricopeptide
repeats 2 [Sus scrofa].
Length = 473
Score = 241 bits (614), Expect(2) = 3e-65
Identities = 117/249 (46%), Positives = 171/249 (68%)
Frame = +2
Query: 173 TATMSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNL 352
TA MS ++ ++ L+QLKCHFTW LV ++ + D E+RV + EF ++++ + N+
Sbjct: 3 TAIMSETT-KNSLESCLQQLKCHFTWNLVEGESSLDDFEDRVCNKTEFQNSEFKATMCNI 61
Query: 353 LAYVKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIY 532
AY+K +GQ+E AL+ L+ AE+ ++EH Q+E+R LVTWGNYAW+YY R AEAQIY
Sbjct: 62 QAYIKDCRGQHEAALECLRQAEEFIRREHASQAEIRSLVTWGNYAWVYYHLGRLAEAQIY 121
Query: 533 LDKVKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEF 712
+DKVK C+K ++P YR+E +MDCEEGW LKCGG ERAK+CF+KAL P++PE
Sbjct: 122 VDKVKQVCKKFSSP--YRIERSEMDCEEGWTRLKCGGNQNERAKMCFQKALAKSPKDPEV 179
Query: 713 STGYAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGE 892
++G AI YRLD+ ++ L+QAVRLNP++ Y+K L A++L ++ +EGE
Sbjct: 180 TSGLAIASYRLDNWPPPRN-----SIDPLRQAVRLNPDNQYVKVLLAMKLRKMNEANEGE 234
Query: 893 KYIKEALTK 919
+ ++EAL K
Sbjct: 235 RLVEEALKK 243
Score = 26.6 bits (57), Expect(2) = 3e-65
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 931 TYVFRHAVKFYRRKGSLDESSQFSKLA 1011
T V R A K YR KG LD++ + + A
Sbjct: 248 TDVLRRAAKLYRSKGDLDQAIELLRQA 274
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,684,094
Number of extensions: 609825
Number of successful extensions: 1670
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1663
Number of HSP's successfully gapped: 8
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008432
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032357.2| interferon-induced protein with tetratricopepti... 275 2e-75
Alignment gi|NP_001103987.1| hypothetical protein LOC667373 isoform 1 [Mu... 270 1e-72
Alignment gi|NP_001095075.1| hypothetical protein LOC667373 isoform 2 [Mu... 269 2e-72
Alignment gi|NP_444447.1| hypothetical protein LOC112419 [Mus musculus]. 259 1e-71
Alignment gi|NP_034631.1| interferon-induced protein with tetratricopepti... 243 2e-65
Alignment gi|NP_001005858.2| interferon-induced protein with tetratricope... 242 5e-65
Alignment gi|NP_032358.1| interferon-induced protein with tetratricopepti... 239 2e-63
>ref|NP_032357.2| interferon-induced protein with tetratricopeptide repeats 1 [Mus
musculus].
Length = 463
Score = 275 bits (704), Expect(2) = 2e-75
Identities = 135/248 (54%), Positives = 176/248 (70%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
M NAD DQ+ + L QL+CHFTW+L+ ++ +IPDLE R+ E+++FLD K +G+HNLLAY
Sbjct: 1 MGENADGDQVMENLLQLRCHFTWKLLFENNDIPDLEVRISEQVQFLDIKNPLGMHNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
V+HLKGQ + AL+SLK+AE L Q E Q R L TWGN AWL+Y AEAQIYLDK
Sbjct: 61 VRHLKGQQDEALQSLKEAEALIQSE---QLSKRSLATWGNCAWLHYHRGSLAEAQIYLDK 117
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
V+ C++ ++P YR+EC +MDCEEGWALLKCGG NY++A CF KAL+ +PENPE++TG
Sbjct: 118 VEKVCKEFSSPFRYRLECAEMDCEEGWALLKCGGGNYKQAMACFAKALKVEPENPEYNTG 177
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YA+ YR D D L L++AVRLNPED Y+K L AL+L +L E E +I
Sbjct: 178 YAVVAYRQDL------DDNFISLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHI 231
Query: 902 KEALTKES 925
+EAL+ S
Sbjct: 232 EEALSSTS 239
Score = 26.2 bits (56), Expect(2) = 2e-75
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 928 KTYVFRHAVKFYRRKGSLDES 990
++YV R+A K++RRK +D++
Sbjct: 241 QSYVIRYAAKYFRRKHRVDKA 261
>ref|NP_001103987.1| hypothetical protein LOC667373 isoform 1 [Mus musculus].
Length = 470
Score = 270 bits (691), Expect = 1e-72
Identities = 136/273 (49%), Positives = 184/273 (67%)
Frame = +2
Query: 176 ATMSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLL 355
+ MS + I D L +L+CHFTW+LVI+ ++PDLE R+ E EF D Y++G+HNLL
Sbjct: 8 SNMSAKSHSCLIYDSLVELRCHFTWKLVIEKVDMPDLEVRI-SETEFFDASYSIGMHNLL 66
Query: 356 AYVKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYL 535
AYV+HLKGQ E AL+SLK+AE L Q E Q RRLVTWGN AWL+Y AEAQ+YL
Sbjct: 67 AYVRHLKGQQEEALQSLKEAEALIQSE---QLSKRRLVTWGNCAWLHYHRGSLAEAQVYL 123
Query: 536 DKVKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFS 715
DKV+ C++ ++P YR+EC +MDCEEGWALLKCG +NY+ A CF KAL+ +PENPE++
Sbjct: 124 DKVEKVCKEFSSPFQYRLECAEMDCEEGWALLKCGIQNYKGAMACFAKALKVEPENPEYN 183
Query: 716 TGYAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEK 895
GYA+ YRLDH++ + L L++AV + PED Y+K L AL+L +L +E EK
Sbjct: 184 AGYAVVAYRLDHIDGTS-------LQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEK 236
Query: 896 YIKEALTKESQRPTSSDMQSSFTEERALWMKAL 994
+I+E L + S +P + F + L +AL
Sbjct: 237 HIEETLPRISSQPYVFGYVAKFYRRKGLVKEAL 269
>ref|NP_001095075.1| hypothetical protein LOC667373 isoform 2 [Mus musculus].
Length = 470
Score = 269 bits (688), Expect = 2e-72
Identities = 134/262 (51%), Positives = 180/262 (68%)
Frame = +2
Query: 209 IKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKGQNE 388
I D L +L+CHFTW+LVI+ ++PDLE R+ E EF D Y++G+HNLLAYV+HLKGQ E
Sbjct: 19 IYDSLVELRCHFTWKLVIEKVDMPDLEVRI-SETEFFDASYSIGMHNLLAYVRHLKGQQE 77
Query: 389 GALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCRKLA 568
AL+SLK+AE L Q E Q RRLVTWGN AWL+Y AEAQ+YLDKV+ C++ +
Sbjct: 78 EALQSLKEAEALIQSE---QLSKRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFS 134
Query: 569 NPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIYRLD 748
+P YR+EC +MDCEEGWALLKCG +NY+ A CF KAL+ +PENPE++ GYA+ YRLD
Sbjct: 135 SPFQYRLECAEMDCEEGWALLKCGIQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLD 194
Query: 749 HLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTKESQ 928
H++ + L L++AV + PED Y+K L AL+L +L +E EK+I+E L + S
Sbjct: 195 HIDGTS-------LQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISS 247
Query: 929 RPTSSDMQSSFTEERALWMKAL 994
+P + F + L +AL
Sbjct: 248 QPYVFGYVAKFYRRKGLVKEAL 269
>ref|NP_444447.1| hypothetical protein LOC112419 [Mus musculus].
Length = 466
Score = 259 bits (661), Expect(2) = 1e-71
Identities = 133/252 (52%), Positives = 173/252 (68%), Gaps = 1/252 (0%)
Frame = +2
Query: 176 ATMSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLL 355
+ MS + + I D L++L+CHFTWEL I+D I DLE ++ E EF D Y++G+HNLL
Sbjct: 8 SNMSEESHKSHIHDSLDELRCHFTWELDIKDKHIHDLEIKI-SETEFRDPIYSIGMHNLL 66
Query: 356 AYVKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYL 535
AYV+HLKGQ + AL+SLK+AE L Q E Q R L TWGN AWL+Y AEAQ+YL
Sbjct: 67 AYVRHLKGQQDEALQSLKEAEALIQSE---QLSKRSLATWGNCAWLHYHRGSLAEAQVYL 123
Query: 536 DKVKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFS 715
DKV+ C++ ++P YR+EC +MDCEEGWAL KCG +NY RA CF++AL+ +PENPE++
Sbjct: 124 DKVEKVCKEFSSPFRYRLECAEMDCEEGWALRKCGSQNYTRAMACFERALKVEPENPEYN 183
Query: 716 TGYAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEK 895
GYA Y LD+ +DG L LK+AV + PED Y+K L AL+L +L DE EK
Sbjct: 184 AGYADVAYHLDY------YDGN-SLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEK 236
Query: 896 YIKEA-LTKESQ 928
+IKEA LT SQ
Sbjct: 237 HIKEATLTISSQ 248
Score = 30.0 bits (66), Expect(2) = 1e-71
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 925 SKTYVFRHAVKFYRRKGSLDESSQFSKLA 1011
S+ +F + KFYRRKG ++E+ F K A
Sbjct: 247 SQNNIFGYVAKFYRRKGCVEEALGFLKKA 275
>ref|NP_034631.1| interferon-induced protein with tetratricopeptide repeats 3 [Mus
musculus].
Length = 403
Score = 243 bits (621), Expect(2) = 2e-65
Identities = 119/244 (48%), Positives = 170/244 (69%)
Frame = +2
Query: 188 NNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVK 367
+ + + ++ L QLKCHFTW L + + +E+RV ++E L+++ +++LLAY+K
Sbjct: 2 SEVNRESLEAILPQLKCHFTWNLFREGSMSSHMEDRVCNQVEHLNSEEKATMYDLLAYIK 61
Query: 368 HLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVK 547
HL G+++ AL+ L AEDL + EH DQSE+RRLVTWGNYAW+YY R +EAQ Y+DKV+
Sbjct: 62 HLDGESKAALECLGQAEDLRKSEHNDQSEIRRLVTWGNYAWIYYHMGRLSEAQAYVDKVR 121
Query: 548 DTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYA 727
C+K ANP Y MECP+++CEEGW LKCG ERAK+CF+KALE P++PE S+G A
Sbjct: 122 QVCQKFANP--YSMECPELECEEGWTRLKCG--RNERAKMCFEKALEEKPKDPECSSGMA 177
Query: 728 ITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKE 907
I ++RL+ + F ++ALKQA+ LNP++ Y+K L AL+L + E EGE+ IK+
Sbjct: 178 IAMFRLEEKP-----EKQFSVDALKQAMELNPQNQYLKVLLALKLLRMGEEAEGERLIKD 232
Query: 908 ALTK 919
AL K
Sbjct: 233 ALGK 236
Score = 25.0 bits (53), Expect(2) = 2e-65
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 925 SKTYVFRHAVKFYRRKGSLDES 990
++T V + A +FY++KG+LD +
Sbjct: 239 NQTDVLQKAAQFYKKKGNLDRA 260
>ref|NP_001005858.2| interferon-induced protein with tetratricopeptide repeats 3-like
[Mus musculus].
Length = 403
Score = 242 bits (617), Expect(2) = 5e-65
Identities = 118/244 (48%), Positives = 170/244 (69%)
Frame = +2
Query: 188 NNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVK 367
+ + + ++ L QLKCHFTW L + + +E+RV ++E L+++ +++LLAY+K
Sbjct: 2 SEVNRESLEAILPQLKCHFTWNLFREGSMSSHMEDRVCNQLEHLNSEEKATMYDLLAYIK 61
Query: 368 HLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVK 547
HL G+++ AL+ L AEDL + EH DQ+E+RRLVTWGNYAW+YY R +EAQ Y+DKV+
Sbjct: 62 HLDGESKAALECLGQAEDLRKSEHKDQAEIRRLVTWGNYAWIYYHMGRLSEAQAYVDKVR 121
Query: 548 DTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYA 727
C+K ANP Y MECP+++CEEGW LKCG ERAK+CF+KALE P++PE S+G A
Sbjct: 122 QVCQKFANP--YSMECPELECEEGWTRLKCG--RNERAKMCFEKALEEKPKDPECSSGMA 177
Query: 728 ITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKE 907
I ++RL+ + F ++ALKQA+ LNP++ Y+K L AL+L + E EGE+ IK+
Sbjct: 178 IAMFRLEEKP-----EKQFSVDALKQAMELNPQNQYVKVLLALKLLRMGEEAEGERLIKD 232
Query: 908 ALTK 919
AL K
Sbjct: 233 ALGK 236
Score = 25.0 bits (53), Expect(2) = 5e-65
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 925 SKTYVFRHAVKFYRRKGSLDES 990
++T V + A +FY++KG+LD +
Sbjct: 239 NQTDVLQKAAQFYKKKGNLDRA 260
>ref|NP_032358.1| interferon-induced protein with tetratricopeptide repeats 2 [Mus
musculus].
Length = 470
Score = 239 bits (611), Expect = 2e-63
Identities = 115/248 (46%), Positives = 170/248 (68%), Gaps = 3/248 (1%)
Frame = +2
Query: 188 NNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVK 367
+ ++ ++ L QLKCHFTW L+ +D + + E+RV + EF ++++ + N+LAYVK
Sbjct: 2 STTSKESLESNLRQLKCHFTWNLIAEDESLDEFEDRVFNKDEFQNSEFKATMCNILAYVK 61
Query: 368 HLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVK 547
H +G NE AL+ L +AE QQ+H DQ E+R LVTWGNYAW+YY + ++AQ YLDKVK
Sbjct: 62 HCRGLNEAALQCLGEAEGFIQQQHPDQVEIRSLVTWGNYAWVYYHMGQFSKAQAYLDKVK 121
Query: 548 DTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYA 727
C+K ++P YR+E P +DCEEGWA LKC ER KVCF+KALE DP+NPEF++G+A
Sbjct: 122 QVCKKFSSP--YRIENPALDCEEGWARLKCTKNQNERVKVCFQKALEKDPKNPEFTSGWA 179
Query: 728 ITIYRLDHLNKVAGFDGP---FCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKY 898
I YRLD D P +C+++L+QA++L+P++ Y+K L AL+L + +++
Sbjct: 180 IANYRLD--------DWPARNYCIDSLEQAIQLSPDNTYVKVLLALKLDAVH-KNQAMAL 230
Query: 899 IKEALTKE 922
++EAL K+
Sbjct: 231 VEEALKKD 238
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,432,304
Number of extensions: 835890
Number of successful extensions: 2244
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2221
Number of HSP's successfully gapped: 11
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008432
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010987.1| interferon-induced protein with tetratricope... 361 e-100
Alignment gi|NP_001539.3| interferon-induced protein with tetratricopepti... 357 1e-98
Alignment gi|NP_036552.1| interferon-induced protein with tetratricopepti... 281 5e-76
Alignment gi|NP_001538.4| interferon-induced protein with tetratricopepti... 256 1e-69
Alignment gi|NP_001540.2| interferon-induced protein with tetratricopepti... 260 1e-69
Alignment gi|NP_001026853.1| interferon-induced protein with tetratricope... 260 1e-69
>ref|NP_001010987.1| interferon-induced protein with tetratricopeptide repeats 1B [Homo
sapiens].
Length = 474
Score = 361 bits (926), Expect = e-100
Identities = 174/271 (64%), Positives = 210/271 (77%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MS +D I+D L QL+CHFTW+L+I+ EIPDLENR+ EEI+FLDTKYNVGIHNLLAY
Sbjct: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHLKGQNE AL SLK AEDL Q+EH +Q+++R LVTWGN+AW+YY R AEAQ YLDK
Sbjct: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
V++TC+K ANPS YRMECP++DCEEGWAL KCGGKNYERAK CF+KALE +PENPEF+TG
Sbjct: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAIT+YRLD N +G + F L+ LK+AVRLNP+D YI+ L AL+L + E EGEKYI
Sbjct: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
Query: 902 KEALTKESQRPTSSDMQSSFTEERALWMKAL 994
+EALT S + + F + KAL
Sbjct: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKAL 271
>ref|NP_001539.3| interferon-induced protein with tetratricopeptide repeats 1 isoform
2 [Homo sapiens].
Length = 478
Score = 357 bits (915), Expect = 1e-98
Identities = 174/271 (64%), Positives = 205/271 (75%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MS N D+ Q+KD LEQL+CHFTWEL I D E+PDLENRVL++IEFLDTKY+VGIHNLLAY
Sbjct: 1 MSTNGDDHQVKDSLEQLRCHFTWELSIDDDEMPDLENRVLDQIEFLDTKYSVGIHNLLAY 60
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
VKHLKGQNE ALKSLK+AE+L Q+EH +Q+ VR LVTWGN+AW+YY R AEAQ YLDK
Sbjct: 61 VKHLKGQNEEALKSLKEAENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDK 120
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
V++ C+KL+NP YRMECP++DCEEGWALLKCGGKNYERAK CF+K LE DPENPE S G
Sbjct: 121 VENICKKLSNPFRYRMECPEIDCEEGWALLKCGGKNYERAKACFEKVLEVDPENPESSAG 180
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYI 901
YAI+ YRLD PF L L+QAVRLNP++ YIK L AL+L + E EGEKYI
Sbjct: 181 YAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYI 240
Query: 902 KEALTKESQRPTSSDMQSSFTEERALWMKAL 994
+EAL S + + F + KAL
Sbjct: 241 EEALANMSSQTYVFRYAAKFYRRKGSVDKAL 271
>ref|NP_036552.1| interferon-induced protein with tetratricopeptide repeats 5 [Homo
sapiens].
Length = 482
Score = 281 bits (720), Expect = 5e-76
Identities = 133/265 (50%), Positives = 192/265 (72%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
+D +K L +L+CHFTW L+ +D ++ ++E+ + +++EFL TK + ++NLLAYVKHLKG
Sbjct: 6 KDTLKAILLELECHFTWNLLKEDIDLFEVEDTIGQQLEFLTTKSRLALYNLLAYVKHLKG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
QN+ AL+ L+ AE++ QQEH+D+ EVR LVTWGNYAW+YY + EAQ Y K+ + C+
Sbjct: 66 QNKDALECLEQAEEIIQQEHSDKEEVRSLVTWGNYAWVYYHMDQLEEAQKYTGKIGNVCK 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
KL++PS+Y++ECP+ DCE+GWALLK GGK Y++AK F+KALE +P+NPEF+ GYAIT+Y
Sbjct: 126 KLSSPSNYKLECPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVY 185
Query: 740 RLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALTK 919
RLD ++ G F L L++AV LNP+++YIK AL+L ++ E EGEKYI+E L +
Sbjct: 186 RLDDSDR-EGSVKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQ 244
Query: 920 ESQRPTSSDMQSSFTEERALWMKAL 994
S +P + F + W KAL
Sbjct: 245 ISSQPYVLRYAAKFYRRKNSWNKAL 269
>ref|NP_001538.4| interferon-induced protein with tetratricopeptide repeats 2 [Homo
sapiens].
Length = 472
Score = 256 bits (655), Expect(2) = 1e-69
Identities = 127/250 (50%), Positives = 173/250 (69%), Gaps = 4/250 (1%)
Frame = +2
Query: 182 MSNNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAY 361
MS N +++ ++ L QLKCHFTW L+ + + D E++V EF + ++ + NLLAY
Sbjct: 1 MSEN-NKNSLESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAY 59
Query: 362 VKHLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDK 541
+KHLKGQNE AL+ L+ AE+L QQEH DQ+E+R LVTWGNYAW+YY R ++ QIY+DK
Sbjct: 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119
Query: 542 VKDTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTG 721
VK C K ++P YR+E P++DCEEGW LKCGG ERAKVCF+KALE P+NPEF++G
Sbjct: 120 VKHVCEKFSSP--YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 722 YAITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSEL----XPEDEG 889
AI YRLD+ ++ L+QA+RLNP++ Y+K L AL+L ++ E EG
Sbjct: 178 LAIASYRLDNWPPSQN-----AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 890 EKYIKEALTK 919
EK ++EAL K
Sbjct: 233 EKLVEEALEK 242
Score = 26.2 bits (56), Expect(2) = 1e-69
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 931 TYVFRHAVKFYRRKGSLDESSQFSKLA 1011
T V R A KFYRRK D++ + K A
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKA 273
>ref|NP_001540.2| interferon-induced protein with tetratricopeptide repeats 3 [Homo
sapiens].
Length = 490
Score = 260 bits (665), Expect = 1e-69
Identities = 131/254 (51%), Positives = 177/254 (69%), Gaps = 1/254 (0%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
++ ++ L QLKCHFTW L +D+ DLE+RV +IEFL+T++ ++NLLAY+KHL G
Sbjct: 6 KNSLEKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAYIKHLDG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
NE AL+ L+ AE+L QQEH DQ+E+R LVTWGNYAW+YY R ++AQIY+DKVK TC+
Sbjct: 66 NNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKVKQTCK 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
K +NP Y +E ++DCEEGW LKCG ERAKVCF+KALE P NPEFS+G AI +Y
Sbjct: 126 KFSNP--YSIEYSELDCEEGWTQLKCG--RNERAKVCFEKALEEKPNNPEFSSGLAIAMY 181
Query: 740 RLD-HLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALT 916
LD H K F + LKQA+ L+P++ Y+K L L+L ++ E EGE++++EAL
Sbjct: 182 HLDNHPEK------QFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALE 235
Query: 917 KESQRPTSSDMQSS 958
K P +D+ S
Sbjct: 236 KS---PCQTDVLRS 246
>ref|NP_001026853.1| interferon-induced protein with tetratricopeptide repeats 3 [Homo
sapiens].
Length = 490
Score = 260 bits (665), Expect = 1e-69
Identities = 131/254 (51%), Positives = 177/254 (69%), Gaps = 1/254 (0%)
Frame = +2
Query: 200 EDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVKHLKG 379
++ ++ L QLKCHFTW L +D+ DLE+RV +IEFL+T++ ++NLLAY+KHL G
Sbjct: 6 KNSLEKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAYIKHLDG 65
Query: 380 QNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVKDTCR 559
NE AL+ L+ AE+L QQEH DQ+E+R LVTWGNYAW+YY R ++AQIY+DKVK TC+
Sbjct: 66 NNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKVKQTCK 125
Query: 560 KLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYAITIY 739
K +NP Y +E ++DCEEGW LKCG ERAKVCF+KALE P NPEFS+G AI +Y
Sbjct: 126 KFSNP--YSIEYSELDCEEGWTQLKCG--RNERAKVCFEKALEEKPNNPEFSSGLAIAMY 181
Query: 740 RLD-HLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALELSELXPEDEGEKYIKEALT 916
LD H K F + LKQA+ L+P++ Y+K L L+L ++ E EGE++++EAL
Sbjct: 182 HLDNHPEK------QFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALE 235
Query: 917 KESQRPTSSDMQSS 958
K P +D+ S
Sbjct: 236 KS---PCQTDVLRS 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,962,560
Number of extensions: 983721
Number of successful extensions: 2727
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2714
Number of HSP's successfully gapped: 7
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008432
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1552 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1552 bits (783), Expect = 0.0
Identities = 821/830 (98%), Gaps = 3/830 (0%)
Strand = Plus / Plus
Query: 185 agtaataatgctgatgaagatcagatcaaggataagctggaacagttgaaatgtcatttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110233781 agtaataatgctgatgaagatcagatcaaggataagctggaacagttgaaatgtcatttt 110233840
Query: 245 acatgggagttggtcattcaagacactgaaatacctgatttagaaaacagggtcttggag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110233841 acatgggagttggtcattcaagacactgaaatacctgatttagaaaacagggtcttggag 110233900
Query: 305 gagattgagttcctcgacaccaaatacaatgtgggaatacacaacctactggcctatgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110233901 gagattgagttcctcgacaccaaatacaatgtgggaatacacaacctactggcctatgtg 110233960
Query: 365 aaacacctgaaaggccagaatgagggagccctgaagagtttgaaagatgctgaagattta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110233961 aaacacctgaaaggccagaatgagggagccctgaagagtttgaaagatgctgaagattta 110234020
Query: 425 acccaacaagaacatactgaccaatcagaggtgagaaggctggttacctggggcaactat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234021 acccaacaagaacatactgaccaatcagaggtgagaaggctggttacctggggcaactat 110234080
Query: 485 gcctggctgtattaccttacgtatcgaaaggcagaagcccagatttacctggacaaggtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234081 gcctggctgtattaccttacgtatcgaaaggcagaagcccagatttacctggacaaggtg 110234140
Query: 545 aaggacacttgcaggaagcttgcaaatccctccagctatagaatggagtgtcctcagatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234141 aaggacacttgcaggaagcttgcaaatccctccagctatagaatggagtgtcctcagatg 110234200
Query: 605 gactgtgaggaaggatgggccttgctaaaatgtggaggaaagaattatgaacgggccaag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234201 gactgtgaggaaggatgggccttgctaaaatgtggaggaaagaattatgaacgggccaag 110234260
Query: 665 gtctgcttcaaaaaagctctggaagcagaccctgaaaatcctgaattcagcactgggtat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234261 gtctgcttcaaaaaagctctggaagcagaccctgaaaatcctgaattcagcactgggtat 110234320
Query: 725 gcaatcaccatctatcgcctagaccaccttaacaaagtagcaggtttcgatgggccattt 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234321 gcaatcaccatctatcgcctagaccaccttaacaaagtagcaggtttcgatgggccattt 110234380
Query: 785 tgtctgaatgctctaaaacaggctgtcaggctaaatccagaagatgcatatattaaggct 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110234381 tgtctgaatgctctaaaacaggctgtcaggctaaatccagaagatgcatatattaaggct 110234440
Query: 845 ctctttgccctggagctttcagaattangaccagaagatgaaggagaaaagtacattaaa 904
|||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 110234441 ctctttgccctgaagcttcaagaattaggacaagaagatgaaggagaaaagtacattaaa 110234500
Query: 905 gaagcactgaccaaggagt-ctcaaagacctacgtcttccgacatgcagtcaagttttac 963
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 110234501 gaagcactgaccaaggagtcctcaaagacctacgtcttccgacacgcagtcaagttttac 110234560
Query: 964 cgaagaaagggctctctggatgaaagctc-tcagttctcaaaactggcct 1012
|||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 110234561 cgaagaaagggctctctggatg-aagctcttcagttctcaaaactggcct 110234609
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 1 atctttgcaacaacacacccacagattacatcactagctcttgtttaccccacttatacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110223608 atctttgcaacaacacacccacagattacatcactagctcttgtttaccccacttatacg 110223667
Query: 61 tacagccctgctctagggcttaaatttatctggaaatccacaagacagactagacagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110223668 tacagccctgctctagggcttaaatttatctggaaatccacaagacagactagacagatc 110223727
Query: 121 acagaggagcccatccagctaaaccaaacaccgcagaactgctgcctgactcacagcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110223728 acagaggagcccatccagctaaaccaaacaccgcagaactgctgcctgactcacagcaac 110223787
Query: 181 catgag 186
||||||
Sbjct: 110223788 catgag 110223793
Score = 60.0 bits (30), Expect = 2e-06
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 413 gctgaagatttaacccaacaagaacatactgaccaatcagaggtgagaaggctggttacc 472
|||||||| || | ||| |||||||| |||||||| |||| | ||||| |||||||||
Sbjct: 110209569 gctgaagagtttatccagcaagaacacactgaccaggcagaaatcagaagcctggttacc 110209628
Query: 473 tggggcaactatgcctgg 490
||||| ||||||||||||
Sbjct: 110209629 tggggaaactatgcctgg 110209646
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,714,944
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 3
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)