Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008434
(1137 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035653.1| oxidoreductase HTATIP2 [Bos taurus]. 456 e-128
>ref|NP_001035653.1| oxidoreductase HTATIP2 [Bos taurus].
Length = 242
Score = 456 bits (1174), Expect = e-128
Identities = 226/241 (93%), Positives = 236/241 (97%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLT DEE
Sbjct: 1 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTLDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR+KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRKKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
+GGCKHFNLLS+KGADKSSNFLYLQVKGEVEAR+EELKFDRYSIFRPGVLLCDRQESRPG
Sbjct: 121 SGGCKHFNLLSSKGADKSSNFLYLQVKGEVEARVEELKFDRYSIFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSL 934
EWLVRKFFGSLPESWASGHSVPV+T+VRAMLNN VRPSD+KKELL+NKAI DLGKAD SL
Sbjct: 181 EWLVRKFFGSLPESWASGHSVPVITVVRAMLNNVVRPSDKKKELLDNKAIHDLGKADDSL 240
Query: 935 K 937
K
Sbjct: 241 K 241
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,412,558
Number of extensions: 1095226
Number of successful extensions: 4015
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4003
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008434
(1137 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534088.1| PREDICTED: similar to HIV-1 Tat interactive pro... 441 e-124
>ref|XP_534088.1| PREDICTED: similar to HIV-1 Tat interactive protein 2, 30kDa [Canis
familiaris].
Length = 242
Score = 441 bits (1133), Expect = e-124
Identities = 217/241 (90%), Positives = 231/241 (95%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA T ALPKLREDFRMQNKSVFILGASGETGRVLL+EILEQ+LFSKVTLIGRR+LTFDEE
Sbjct: 1 MAGTPALPKLREDFRMQNKSVFILGASGETGRVLLREILEQNLFSKVTLIGRRRLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR+KAGAEGFVRVDRDY+ KSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRKKAGAEGFVRVDRDYVFKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEAR+EEL+FDRYS+FRPGVLLCDRQESRP
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEARVEELQFDRYSVFRPGVLLCDRQESRPS 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSL 934
EWLVRKFFGSLPESWASGHSVPV+T+VRAMLNN V PS +KKELL+NKAI DLGKAD L
Sbjct: 181 EWLVRKFFGSLPESWASGHSVPVMTVVRAMLNNAVSPSGKKKELLDNKAIHDLGKADSCL 240
Query: 935 K 937
K
Sbjct: 241 K 241
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,179,641
Number of extensions: 1109950
Number of successful extensions: 3874
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3863
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008434
(1137 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122968.2| PREDICTED: oxidoreductase HTATIP2-like [Sus ... 283 2e-76
Alignment gi|XP_003353974.1| PREDICTED: hypothetical protein LOC100626454... 283 2e-76
Alignment gi|XP_003122969.1| PREDICTED: hypothetical protein LOC100521771... 178 4e-45
>ref|XP_003122968.2| PREDICTED: oxidoreductase HTATIP2-like [Sus scrofa].
Length = 161
Score = 283 bits (723), Expect = 2e-76
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +2
Query: 518 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 697
EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR
Sbjct: 21 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 80
Query: 698 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQK 877
YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQK
Sbjct: 81 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQK 140
Query: 878 KELLENKAILDLGKADGSLKT 940
KELLENKAILDLGKADGSLKT
Sbjct: 141 KELLENKAILDLGKADGSLKT 161
>ref|XP_003353974.1| PREDICTED: hypothetical protein LOC100626454 [Sus scrofa].
Length = 323
Score = 283 bits (723), Expect = 2e-76
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +2
Query: 518 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 697
EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR
Sbjct: 183 EGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDR 242
Query: 698 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQK 877
YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQK
Sbjct: 243 YSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQK 302
Query: 878 KELLENKAILDLGKADGSLKT 940
KELLENKAILDLGKADGSLKT
Sbjct: 303 KELLENKAILDLGKADGSLKT 323
>ref|XP_003122969.1| PREDICTED: hypothetical protein LOC100521771 [Sus scrofa].
Length = 307
Score = 178 bits (452), Expect = 4e-45
Identities = 98/136 (72%), Positives = 98/136 (72%)
Frame = +2
Query: 2 MSPEDEVGKAPTREGPDXXXXXXXXXXXXXXXXXXXPVALXXXXXXXXXXXXXXXXXXXR 181
MSPEDEVGKAPTREGPD PVAL R
Sbjct: 1 MSPEDEVGKAPTREGPDRVGTERGGGAGRRHGRMSRPVALSAAGAAAAGAVLVAALLLLR 60
Query: 182 PEDEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTL 361
PEDEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTL
Sbjct: 61 PEDEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTL 120
Query: 362 IGRRKLTFDEEAYKNV 409
IGRRKLTFDEEAYKNV
Sbjct: 121 IGRRKLTFDEEAYKNV 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,929,175
Number of extensions: 737406
Number of successful extensions: 2527
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2525
Number of HSP's successfully gapped: 3
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008434
(1137 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058561.2| oxidoreductase HTATIP2 isoform a [Mus musculus]. 425 e-119
Alignment gi|NP_001139525.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 414 e-116
Alignment gi|NP_001139524.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 414 e-116
Alignment gi|NP_001139522.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 414 e-116
Alignment gi|NP_001139521.1| oxidoreductase HTATIP2 isoform b [Mus muscul... 414 e-116
>ref|NP_058561.2| oxidoreductase HTATIP2 isoform a [Mus musculus].
Length = 275
Score = 425 bits (1092), Expect = e-119
Identities = 210/244 (86%), Positives = 229/244 (93%)
Frame = +2
Query: 188 DEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIG 367
DEG GA SMA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIG
Sbjct: 25 DEGSGAAPSMADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIG 84
Query: 368 RRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDY 547
RRKLTF+EEAYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY
Sbjct: 85 RRKLTFEEEAYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDY 144
Query: 548 ILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLL 727
+LKSAELAKAGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLL
Sbjct: 145 VLKSAELAKAGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLL 204
Query: 728 CDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAIL 907
CDRQESRPGEWL RKFFGSLP+SWASG++VPV+T+VRAMLNN V PS + ELLENKAIL
Sbjct: 205 CDRQESRPGEWLARKFFGSLPDSWASGYAVPVVTVVRAMLNNLVSPSSGQMELLENKAIL 264
Query: 908 DLGK 919
LGK
Sbjct: 265 HLGK 268
>ref|NP_001139525.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 414 bits (1064), Expect = e-116
Identities = 204/235 (86%), Positives = 223/235 (94%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGK 919
EWL RKFFGSLP+SWASG++VPV+T+VRAMLNN V PS + ELLENKAIL LGK
Sbjct: 181 EWLARKFFGSLPDSWASGYAVPVVTVVRAMLNNLVSPSSGQMELLENKAILHLGK 235
>ref|NP_001139524.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 414 bits (1064), Expect = e-116
Identities = 204/235 (86%), Positives = 223/235 (94%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGK 919
EWL RKFFGSLP+SWASG++VPV+T+VRAMLNN V PS + ELLENKAIL LGK
Sbjct: 181 EWLARKFFGSLPDSWASGYAVPVVTVVRAMLNNLVSPSSGQMELLENKAILHLGK 235
>ref|NP_001139522.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 414 bits (1064), Expect = e-116
Identities = 204/235 (86%), Positives = 223/235 (94%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGK 919
EWL RKFFGSLP+SWASG++VPV+T+VRAMLNN V PS + ELLENKAIL LGK
Sbjct: 181 EWLARKFFGSLPDSWASGYAVPVVTVVRAMLNNLVSPSSGQMELLENKAILHLGK 235
>ref|NP_001139521.1| oxidoreductase HTATIP2 isoform b [Mus musculus].
Length = 242
Score = 414 bits (1064), Expect = e-116
Identities = 204/235 (86%), Positives = 223/235 (94%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MA+ EALPKLREDF+MQNKSVFILGASGETG+VLLKEIL Q+LFSKVTLIGRRKLTF+EE
Sbjct: 1 MADKEALPKLREDFKMQNKSVFILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLD YASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDVYASAFQGHDVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS++GADKSS+FLYLQVKGEVEA++EELKFDR S+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSRGADKSSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGK 919
EWL RKFFGSLP+SWASG++VPV+T+VRAMLNN V PS + ELLENKAIL LGK
Sbjct: 181 EWLARKFFGSLPDSWASGYAVPVVTVVRAMLNNLVSPSSGQMELLENKAILHLGK 235
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,765,228
Number of extensions: 908505
Number of successful extensions: 2930
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2926
Number of HSP's successfully gapped: 5
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008434
(1137 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091990.1| oxidoreductase HTATIP2 isoform a [Homo sapie... 461 e-130
Alignment gi|NP_001091992.1| oxidoreductase HTATIP2 isoform b [Homo sapie... 447 e-126
Alignment gi|NP_001091991.1| oxidoreductase HTATIP2 isoform b [Homo sapie... 447 e-126
Alignment gi|NP_006401.3| oxidoreductase HTATIP2 isoform b [Homo sapiens]. 447 e-126
Alignment gi|NP_001091993.1| oxidoreductase HTATIP2 isoform c [Homo sapie... 192 4e-49
>ref|NP_001091990.1| oxidoreductase HTATIP2 isoform a [Homo sapiens].
Length = 276
Score = 461 bits (1186), Expect = e-130
Identities = 230/253 (90%), Positives = 241/253 (95%)
Frame = +2
Query: 179 RPEDEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVT 358
R ED G GAG SMAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVT
Sbjct: 23 RREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVT 82
Query: 359 LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVD 538
LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVD
Sbjct: 83 LIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVD 142
Query: 539 RDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPG 718
RDY+LKSAELAKAGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPG
Sbjct: 143 RDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPG 202
Query: 719 VLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENK 898
VLLCDRQESRPGEWLVRKFFGSLP+SWASGHSVPV+T+VRAMLNN VRP D++ ELLENK
Sbjct: 203 VLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENK 262
Query: 899 AILDLGKADGSLK 937
AI DLGKA GSLK
Sbjct: 263 AIHDLGKAHGSLK 275
>ref|NP_001091992.1| oxidoreductase HTATIP2 isoform b [Homo sapiens].
Length = 242
Score = 447 bits (1151), Expect = e-126
Identities = 222/241 (92%), Positives = 233/241 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSL 934
EWLVRKFFGSLP+SWASGHSVPV+T+VRAMLNN VRP D++ ELLENKAI DLGKA GSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 935 K 937
K
Sbjct: 241 K 241
>ref|NP_001091991.1| oxidoreductase HTATIP2 isoform b [Homo sapiens].
Length = 242
Score = 447 bits (1151), Expect = e-126
Identities = 222/241 (92%), Positives = 233/241 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSL 934
EWLVRKFFGSLP+SWASGHSVPV+T+VRAMLNN VRP D++ ELLENKAI DLGKA GSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 935 K 937
K
Sbjct: 241 K 241
>ref|NP_006401.3| oxidoreductase HTATIP2 isoform b [Homo sapiens].
Length = 242
Score = 447 bits (1151), Expect = e-126
Identities = 222/241 (92%), Positives = 233/241 (96%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAK 574
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGAEGFVRVDRDY+LKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 575 AGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPG 754
AGGCKHFNLLS+KGADKSSNFLYLQVKGEVEA++EELKFDRYS+FRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 755 EWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSL 934
EWLVRKFFGSLP+SWASGHSVPV+T+VRAMLNN VRP D++ ELLENKAI DLGKA GSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 935 K 937
K
Sbjct: 241 K 241
>ref|NP_001091993.1| oxidoreductase HTATIP2 isoform c [Homo sapiens].
Length = 133
Score = 192 bits (489), Expect = 4e-49
Identities = 97/101 (96%), Positives = 98/101 (97%)
Frame = +2
Query: 215 MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEE 394
MAETEAL KLREDFRMQNKSVFILGASGETGRVLLKEILEQ LFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 395 AYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGA 517
AYKNVNQEVVDFEKLDDYASAFQGH+VGFCCLGTTR KAGA
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,212,828
Number of extensions: 1085923
Number of successful extensions: 3873
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3860
Number of HSP's successfully gapped: 5
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008434
(1137 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 789 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 789 bits (398), Expect = 0.0
Identities = 417/422 (98%), Gaps = 1/422 (0%)
Strand = Plus / Plus
Query: 717 gagttctgttatgtgataggcaagaatctcgcccaggtgaatggttggttaggaagttct 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41979494 gagttctgttatgtgataggcaagaatctcgcccaggtgaatggttggttaggaagttct 41979553
Query: 777 ttggctccttaccagaatcttgggccagcggacactctgtgccagtgctgactttggtta 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41979554 ttggctccttaccagaatcttgggccagcggacactctgtgccagtgctgactttggtta 41979613
Query: 837 gagcgatgctgaacaacacagtgagaccaagcgaccagaagaaggaactgctggaaaaca 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41979614 gagcgatgctgaacaacacagtgagaccaagcgaccagaagaaggaactgctggaaaaca 41979673
Query: 897 aggccatccttgacctgggaaaagctgatggctctctcaagacataaccatgctggagaa 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41979674 aggccatccttgacctgggaaaagctgatggctctctcaagacataaccatgctggagaa 41979733
Query: 957 atgctttttattgtaaaattc-acactttgtacctcatcggtaatttcagggtctaaaaa 1015
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41979734 atgctttttattgtaaaattcaacactttgtacctcatcggtaatttcagggtctaaaaa 41979793
Query: 1016 agttagcacgccttaactgtagttttactattcctagccccccagatccaatcaaaaaat 1075
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41979794 agttagcacgccttaactgtagttttactattcttagccccccagatccaatcaaaaaat 41979853
Query: 1076 gatcgcgctctgcatcagcattttagaggctagttgtacatatgtaaacttcacccaggg 1135
|||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 41979854 gatcgcactctgcatcagcattttagaggctagttgtacatatgtaaacatcaaccaggg 41979913
Query: 1136 at 1137
||
Sbjct: 41979914 at 41979915
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 212 agcatggccgagacagaagcgctgccgaagcttcgggaagacttcaggatgcagaataaa 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41964072 agcatggccgagacagaagcgctgccgaagcttcgggaagacttcaggatgcagaataaa 41964131
Query: 272 tccgtctttattctgggcgccagcggggaaaccggccgagtgctgctgaaggaaatcctg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41964132 tccgtctttattctgggcgccagcggggaaaccggccgagtgctgctgaaggaaatcctg 41964191
Query: 332 gaacagagcctattttccaaagtcacgctcattggccggaggaagctcacattcgacgag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41964192 gaacagagcctattttccaaagtcacgctcattggccggaggaagctcacattcgacgag 41964251
Query: 392 gaagcttataaaaacgtg 409
||||||||||||||||||
Sbjct: 41964252 gaagcttataaaaacgtg 41964269
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 517 ggagggatttgttcgtgttgatcgagattacatcctcaagtctgcagagctggccaaagc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41975617 ggagggatttgttcgtgttgatcgagattacatcctcaagtctgcagagctggccaaagc 41975676
Query: 577 tggagggtgcaaacatttcaacttgctgtccgctaagggagctgataagtcaagcaactt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41975677 tggagggtgcaaacatttcaacttgctgtccgctaagggagctgataagtcaagcaactt 41975736
Query: 637 tttatatctgcaagtcaagg 656
||||||||||||||||||||
Sbjct: 41975737 tttatatctgcaagtcaagg 41975756
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gatgtcaccggaagacgaagtagggaaggcgccaacccgggaggggcccgatcgagttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41963509 gatgtcaccggaagacgaagtagggaaggcgccaacccgggaggggcccgatcgagttgg 41963568
Query: 61 gacagaacgaggaggaggcgcaggcaggaggcatggccggatgtcgcggcccgtagccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41963569 gacagaacgaggaggaggcgcaggcaggaggcatggccggatgtcgcggcccgtagccct 41963628
Query: 121 aa 122
||
Sbjct: 41963629 aa 41963630
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 409 gaatcaagaagtggtggactttgaaaagttggatgactacgcttctgcctttcaaggtca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41965733 gaatcaagaagtggtggactttgaaaagttggatgactacgcttctgcctttcaaggtca 41965792
Query: 469 tgaggttggattctgttgcctgggtactaccagaagaaaagctggggcgg 518
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41965793 tgaggttggattctgttgcctgggtactaccagaagaaaagctggggcgg 41965842
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 654 agggagaagtggaagctagaattgaagaattaaaatttgatcgttactccatatttaggc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978713 agggagaagtggaagctagaattgaagaattaaaatttgatcgttactccatatttaggc 41978772
Query: 714 cagg 717
||||
Sbjct: 41978773 cagg 41978776
Score = 121 bits (61), Expect = 9e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 153 tgctagtggccgccctgctcctgttgcggcctgaggacgaagggctgggggccgggtcca 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41963661 tgctagtggccgccctgctcctgttgcggcctgaggacgaagggctgggggccgggtcca 41963720
Query: 213 g 213
|
Sbjct: 41963721 g 41963721
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,204,342
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 7
Length of query: 1137
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1116
Effective length of database: 2,808,413,156
Effective search space: 3134189082096
Effective search space used: 3134189082096
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)