Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008438
(1032 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030210.1| MYG1 protein precursor [Bos taurus]. 585 e-167
>ref|NP_001030210.1| MYG1 protein precursor [Bos taurus].
Length = 381
Score = 585 bits (1509), Expect = e-167
Identities = 289/332 (87%), Positives = 297/332 (89%)
Frame = +3
Query: 36 MGHRFLRGXXXXXXXXXXXXXXWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCD 215
MGHRFLRG PH LSLE V PSKRPRSHLMAPPRIGTHNGTFHCD
Sbjct: 1 MGHRFLRGFLRVLLPPLPLR---SPHLKLSLEPVAPSKRPRSHLMAPPRIGTHNGTFHCD 57
Query: 216 EALACALLRLLPEYWDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMS 395
EALACALLRLLPEY +AEIVRTRDPEKLA+CDIVVDVGGEYDPQRHRYDHHQRSFTETMS
Sbjct: 58 EALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRYDHHQRSFTETMS 117
Query: 396 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDN 575
SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEED +VG LYDKMYENFVEEVDAVDN
Sbjct: 118 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDN 177
Query: 576 GIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQH 755
GI+QWEEGEPRY LTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQ+
Sbjct: 178 GISQWEEGEPRYLLTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQN 237
Query: 756 SWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQ 935
SWLPAR LVEEALA+RFQVD SG+IIEL KGGCPWKEHLY LEL LSP I+FVIYTDQ
Sbjct: 238 SWLPARTLVEEALAKRFQVDPSGEIIELGKGGCPWKEHLYQLELGLSPAGTIAFVIYTDQ 297
Query: 936 AGQWRVQCVPKELHSFQSRLPLPEPCRGLRDE 1031
AGQWRVQCVPKE HSFQSRLPL EP RGLRDE
Sbjct: 298 AGQWRVQCVPKEPHSFQSRLPLLEPWRGLRDE 329
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,616,539
Number of extensions: 1322756
Number of successful extensions: 4784
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4774
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008438
(1032 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849816.1| PREDICTED: similar to MYG1 protein [Canis famil... 568 e-162
>ref|XP_849816.1| PREDICTED: similar to MYG1 protein [Canis familiaris].
Length = 358
Score = 568 bits (1464), Expect = e-162
Identities = 272/304 (89%), Positives = 286/304 (94%)
Frame = +3
Query: 120 LSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCDEALACALLRLLPEYWDAEIVRTRDPEKL 299
L E V P KRPR LMAP RIGTH+GTFHCDEALACALLRLLPEY DAEIVRTRDPEKL
Sbjct: 2 LRAEPVPPPKRPRGGLMAPARIGTHDGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKL 61
Query: 300 ASCDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLA 479
A+CD+VVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGK WQTKLSSAGL+YLHFGHKLLA
Sbjct: 62 AACDVVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKRWQTKLSSAGLVYLHFGHKLLA 121
Query: 480 QLLGTSEEDSVVGILYDKMYENFVEEVDAVDNGIAQWEEGEPRYALTTTLSARVARLNPT 659
QLLGTSEEDS+VG +YDKMYENFVEEVDAVDNGI+QWEEGEPRY LTTTLSARVARLNPT
Sbjct: 122 QLLGTSEEDSMVGTIYDKMYENFVEEVDAVDNGISQWEEGEPRYVLTTTLSARVARLNPT 181
Query: 660 WNQPNQDTEAGFKRAMDLVREEFLQRLDFYQHSWLPARALVEEALAQRFQVDASGKIIEL 839
WNQPNQDTEAGF+RAMDLVREEFLQR+DFYQHSWLPARALV+EALAQRFQVD SG+I+EL
Sbjct: 182 WNQPNQDTEAGFQRAMDLVREEFLQRVDFYQHSWLPARALVQEALAQRFQVDPSGEIVEL 241
Query: 840 AKGGCPWKEHLYHLELDLSPPVAISFVIYTDQAGQWRVQCVPKELHSFQSRLPLPEPCRG 1019
AKGGCPWKEHLYHLE LSPPV ++FVIYTDQAGQWRVQCVPKE HSFQSRLPLPEP RG
Sbjct: 242 AKGGCPWKEHLYHLESGLSPPVTVAFVIYTDQAGQWRVQCVPKEPHSFQSRLPLPEPWRG 301
Query: 1020 LRDE 1031
LRDE
Sbjct: 302 LRDE 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,430,490
Number of extensions: 1361061
Number of successful extensions: 4807
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4795
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008438
(1032 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126234.2| PREDICTED: UPF0160 protein MYG1, mitochondri... 649 0.0
>ref|XP_003126234.2| PREDICTED: UPF0160 protein MYG1, mitochondrial-like [Sus scrofa].
Length = 384
Score = 649 bits (1675), Expect = 0.0
Identities = 316/332 (95%), Positives = 316/332 (95%)
Frame = +3
Query: 36 MGHRFLRGXXXXXXXXXXXXXXWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCD 215
MGHRFLRG WGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCD
Sbjct: 1 MGHRFLRGLLPLLLPLPPVPTLWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCD 60
Query: 216 EALACALLRLLPEYWDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMS 395
EALACALLRLLPEY DAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMS
Sbjct: 61 EALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMS 120
Query: 396 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDN 575
SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDN
Sbjct: 121 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDN 180
Query: 576 GIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQH 755
GIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQH
Sbjct: 181 GIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQH 240
Query: 756 SWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQ 935
SWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQ
Sbjct: 241 SWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQ 300
Query: 936 AGQWRVQCVPKELHSFQSRLPLPEPCRGLRDE 1031
AGQWRVQCVPKELHSFQSRLPLPEP RGLRDE
Sbjct: 301 AGQWRVQCVPKELHSFQSRLPLPEPWRGLRDE 332
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,233,321
Number of extensions: 860015
Number of successful extensions: 3153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3148
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008438
(1032 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068359.1| melanocyte proliferating gene 1 precursor [Mus ... 568 e-162
>ref|NP_068359.1| melanocyte proliferating gene 1 precursor [Mus musculus].
Length = 380
Score = 568 bits (1464), Expect = e-162
Identities = 277/332 (83%), Positives = 297/332 (89%)
Frame = +3
Query: 36 MGHRFLRGXXXXXXXXXXXXXXWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCD 215
MG RFLRG HR L E P+KRPR++LMAPPRIGTHNGTFHCD
Sbjct: 1 MGRRFLRGILTLPLRSVLQ----AQHRMLGSEQDPPAKRPRNNLMAPPRIGTHNGTFHCD 56
Query: 216 EALACALLRLLPEYWDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMS 395
EALACALLRLLPEY +AEIVRTRDPEKLASCDIVVDVGGEY+PQ HRYDHHQR+FTETMS
Sbjct: 57 EALACALLRLLPEYANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRYDHHQRTFTETMS 116
Query: 396 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDN 575
SL PGKPWQTKLSSAGL+YLHFG KLLAQLLGTSEEDSVV +YDKMYENFVEEVDAVDN
Sbjct: 117 SLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDN 176
Query: 576 GIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQH 755
GI+QW EGEPRYA+TTTLSARVARLNPTWNQPNQDTEAGF+RAMDLV+EEFLQRL+FYQH
Sbjct: 177 GISQWAEGEPRYAMTTTLSARVARLNPTWNQPNQDTEAGFRRAMDLVQEEFLQRLNFYQH 236
Query: 756 SWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQ 935
SWLPARALVEEALAQRF+VD+SG+I+ELAKGGCPWKEHLYHLE +LSP VAI+FVIYTDQ
Sbjct: 237 SWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPKVAITFVIYTDQ 296
Query: 936 AGQWRVQCVPKELHSFQSRLPLPEPCRGLRDE 1031
AGQWRVQCVPKE HSFQSRLPLPEP RGLRD+
Sbjct: 297 AGQWRVQCVPKEPHSFQSRLPLPEPWRGLRDK 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,388,179
Number of extensions: 1095658
Number of successful extensions: 3900
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3892
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008438
(1032 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067653.3| MYG1 protein precursor [Homo sapiens]. 583 e-166
>ref|NP_067653.3| MYG1 protein precursor [Homo sapiens].
Length = 376
Score = 583 bits (1502), Expect = e-166
Identities = 287/332 (86%), Positives = 297/332 (89%)
Frame = +3
Query: 36 MGHRFLRGXXXXXXXXXXXXXXWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCD 215
MGH+FLRG + HR L E V P KR RS LMAPPRIGTHNGTFHCD
Sbjct: 1 MGHQFLRGLLTLLLPPPPL---YTRHRMLGPESVPPPKRSRSKLMAPPRIGTHNGTFHCD 57
Query: 216 EALACALLRLLPEYWDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMS 395
EALACALLRLLPEY DAEIVRTRDPEKLASCDIVVDVGGEYDP+RHRYDHHQRSFTETMS
Sbjct: 58 EALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPRRHRYDHHQRSFTETMS 117
Query: 396 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDN 575
SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDS+VG LYDKMYENFVEEVDAVDN
Sbjct: 118 SLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSMVGTLYDKMYENFVEEVDAVDN 177
Query: 576 GIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQH 755
GI+QW EGEPRYALTTTLSARVARLNPTWN P+QDTEAGFKRAMDLV+EEFLQRLDFYQH
Sbjct: 178 GISQWAEGEPRYALTTTLSARVARLNPTWNHPDQDTEAGFKRAMDLVQEEFLQRLDFYQH 237
Query: 756 SWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQ 935
SWLPARALVEEALAQRFQVD SG+I+ELAKG CPWKEHLYHLE LSPPVAI FVIYTDQ
Sbjct: 238 SWLPARALVEEALAQRFQVDPSGEIVELAKGACPWKEHLYHLESGLSPPVAIFFVIYTDQ 297
Query: 936 AGQWRVQCVPKELHSFQSRLPLPEPCRGLRDE 1031
AGQWR+QCVPKE HSFQSRLPLPEP RGLRDE
Sbjct: 298 AGQWRIQCVPKEPHSFQSRLPLPEPWRGLRDE 329
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,496,683
Number of extensions: 1325357
Number of successful extensions: 4842
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4832
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008438
(1032 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 509 e-142
>Sscrofa_Chr05
|| Length = 111506441
Score = 509 bits (257), Expect = e-142
Identities = 257/257 (100%)
Strand = Plus / Plus
Query: 1 cttccggttcagcgccctccttctgggtaagctgcatgggacaccgcttcctgcgcggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18952904 cttccggttcagcgccctccttctgggtaagctgcatgggacaccgcttcctgcgcggtc 18952963
Query: 61 tcctacctctgctgctcccgctgccgccggtgccaaccctttggggtccgcatcgcacgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18952964 tcctacctctgctgctcccgctgccgccggtgccaaccctttggggtccgcatcgcacgc 18953023
Query: 121 tcagcctggagttcgtcttgccctccaaaaggccccgcagccacctcatggctccgcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18953024 tcagcctggagttcgtcttgccctccaaaaggccccgcagccacctcatggctccgcccc 18953083
Query: 181 gaatcgggacacacaatggcaccttccactgcgacgaggcgctggcctgcgcgttgctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18953084 gaatcgggacacacaatggcaccttccactgcgacgaggcgctggcctgcgcgttgctgc 18953143
Query: 241 gcctcctgcccgagtac 257
|||||||||||||||||
Sbjct: 18953144 gcctcctgcccgagtac 18953160
Score = 329 bits (166), Expect = 2e-87
Identities = 180/187 (96%)
Strand = Plus / Plus
Query: 806 ccaggtggatgcaagtgggaagataatagaactggcaaagggtggatgcccctggaagga 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18961048 ccaggtggatgcaagtgggaagataatagaactggcaaagggtggatgcccctggaagga 18961107
Query: 866 gcacctctaccacctggaattggatctgtnnnnnnnggtggccatctcctttgtcatcta 925
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18961108 gcacctctaccacctggaattggatctgtcccccccggtggccatctcctttgtcatcta 18961167
Query: 926 cactgaccaggctggacagtggcgggtacagtgtgtgcctaaggagctccattcattcca 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18961168 cactgaccaggctggacagtggcgggtacagtgtgtgcctaaggagctccattcattcca 18961227
Query: 986 gagcagg 992
|||||||
Sbjct: 18961228 gagcagg 18961234
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 372 aggtctttcacagagaccatgagctccctgtcccctgggaagccgtggcagaccaagctg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18956272 aggtctttcacagagaccatgagctccctgtcccctgggaagccgtggcagaccaagctg 18956331
Query: 432 agcagtgcgggactcatctatctgcacttcgggcacaagctgctggcccagttgctgggc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18956332 agcagtgcgggactcatctatctgcacttcgggcacaagctgctggcccagttgctgggc 18956391
Query: 492 actagcgaagaggacagcgtggtgggcatcctctatgacaag 533
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18956392 actagcgaagaggacagcgtggtgggcatcctctatgacaag 18956433
Score = 293 bits (148), Expect = 1e-76
Identities = 154/156 (98%)
Strand = Plus / Plus
Query: 532 agatgtatgagaacttcgtggaggaggtggatgcggtggacaatgggatcgcccagtggg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18960529 agatgtatgagaacttcgtggaggaggtggatgcggtggacaatgggatcgcccagtggg 18960588
Query: 592 aggagggagagcctcggtacgcgctgaccacgaccctgagtgcccgggttgctcggctca 651
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 18960589 aggagggagaacctcggtatgcgctgaccacgaccctgagtgcccgggttgctcggctca 18960648
Query: 652 atcccacctggaaccagcccaaccaagacactgagg 687
||||||||||||||||||||||||||||||||||||
Sbjct: 18960649 atcccacctggaaccagcccaaccaagacactgagg 18960684
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 685 aggccgggttcaagcgtgcaatggatctggttcgagaggagtttctacagagactagact 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18960826 aggccgggttcaagcgtgcaatggatctggttcgagaggagtttctacagagactagact 18960885
Query: 745 tctaccagcacagctggctgccagcccgggccctggtggaagaggccctggcccagcggt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18960886 tctaccagcacagctggctgccagcccgggccctggtggaagaggccctggcccagcggt 18960945
Query: 805 tccaggt 811
|||||||
Sbjct: 18960946 tccaggt 18960952
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 260 ggatgcagagattgtgcggacccgggaccccgagaaactggcttcttgtgacatcgtggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18953358 ggatgcagagattgtgcggacccgggaccccgagaaactggcttcttgtgacatcgtggt 18953417
Query: 320 agacgtgggtggagagtacgaccctcagagacaccgatatgaccatcaccagaggt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18953418 agacgtgggtggagagtacgaccctcagagacaccgatatgaccatcaccagaggt 18953473
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 990 aggctgcccctgccagagccatgccggggtcttcgggatgagg 1032
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 18961390 aggctgcccctgccagagccatggcggggtcttcgggatgagg 18961432
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,773,840
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 7
Length of query: 1032
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1011
Effective length of database: 2,808,413,156
Effective search space: 2839305700716
Effective search space used: 2839305700716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)