Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008441
(978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029804.1| peptidyl-prolyl cis-trans isomerase NIMA-int... 305 3e-83
Alignment gi|NP_001099127.1| protein (peptidyl-prolyl cis/trans isomerase... 53 4e-07
>ref|NP_001029804.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Bos
taurus].
Length = 163
Score = 305 bits (782), Expect = 3e-83
Identities = 151/163 (92%), Positives = 152/163 (93%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXXQGEPTRVRCSHL 203
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP QGEPTRVRCSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSGSGKNGQGEPTRVRCSHL 60
Query: 204 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 383
LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDC+SAKARG
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 384 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
>ref|NP_001099127.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
(parvulin) [Bos taurus].
Length = 131
Score = 53.1 bits (126), Expect = 4e-07
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG + F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL + PVFT
Sbjct: 55 MEKLKSGMK-FNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPISVLDKPVFT 112
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 113 DPPVKTKFGYHIIM 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,050,238
Number of extensions: 1355391
Number of successful extensions: 6336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6281
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008441
(978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542080.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 305 3e-83
Alignment gi|XP_849819.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 52 1e-06
Alignment gi|XP_849005.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 49 6e-06
>ref|XP_542080.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
NIMA-interacting 1 (Rotamase Pin1) (PPIase Pin1) [Canis
familiaris].
Length = 163
Score = 305 bits (782), Expect = 3e-83
Identities = 151/163 (92%), Positives = 152/163 (93%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXXQGEPTRVRCSHL 203
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP QGEPTRVRCSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGSKNGQGEPTRVRCSHL 60
Query: 204 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 383
LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDC+SAKARG
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 384 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
>ref|XP_849819.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) [Canis
familiaris].
Length = 224
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL PVFT
Sbjct: 148 MEKLKSGMR-FNEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGPDEPVFT 205
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 206 DPPIRTEFGYHIIM 219
>ref|XP_849005.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4)
(Parvulin 14) (Par14) (Peptidyl-prolyl cis/trans
isomerase EPVH) (hPar14) [Canis familiaris].
Length = 131
Score = 49.3 bits (116), Expect = 6e-06
Identities = 32/73 (43%), Positives = 44/73 (60%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG F +A+Q+S+ + A+ GDLG +RG M PF+ A+FAL PVFT
Sbjct: 55 MEKLKSGMR-FNEVATQYSE-DKARQGGDLGWMTRGSMVGPFQAAAFALPVSGPDKPVFT 112
Query: 480 DSGIHIILRTE*G 518
D I RTE G
Sbjct: 113 DPPI----RTEFG 121
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,854,307
Number of extensions: 1395572
Number of successful extensions: 6146
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6052
Number of HSP's successfully gapped: 3
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008441
(978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354110.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 307 5e-84
Alignment gi|XP_003123277.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 307 5e-84
Alignment gi|XP_003135228.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 53 2e-07
>ref|XP_003354110.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
1-like [Sus scrofa].
Length = 163
Score = 307 bits (787), Expect = 5e-84
Identities = 152/163 (93%), Positives = 152/163 (93%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXXQGEPTRVRCSHL 203
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP QGEPTRVRCSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSGGSKNGQGEPTRVRCSHL 60
Query: 204 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 383
LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 120
Query: 384 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
>ref|XP_003123277.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
1-like [Sus scrofa].
Length = 163
Score = 307 bits (787), Expect = 5e-84
Identities = 152/163 (93%), Positives = 152/163 (93%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXXQGEPTRVRCSHL 203
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP QGEPTRVRCSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSGGSKNGQGEPTRVRCSHL 60
Query: 204 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 383
LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 120
Query: 384 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
>ref|XP_003135228.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
4-like [Sus scrofa].
Length = 131
Score = 53.1 bits (126), Expect = 2e-07
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG + F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL + PVFT
Sbjct: 55 MEKLKSGMK-FNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPISVLDKPVFT 112
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 113 DPPVKTKFGYHIIM 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,246,610
Number of extensions: 881483
Number of successful extensions: 3905
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3868
Number of HSP's successfully gapped: 3
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008441
(978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075860.1| peptidyl-prolyl cis-trans isomerase NIMA-intera... 294 8e-80
Alignment gi|NP_001028940.1| peptidylprolyl cis/trans isomerase, NIMA-int... 280 9e-76
Alignment gi|NP_081457.1| peptidyl-prolyl cis-trans isomerase NIMA-intera... 54 1e-07
Alignment gi|XP_897983.1| PREDICTED: peptidyl-prolyl cis-trans isomerase ... 54 1e-07
Alignment gi|XP_922271.1| PREDICTED: peptidyl-prolyl cis-trans isomerase ... 54 1e-07
>ref|NP_075860.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Mus
musculus].
Length = 165
Score = 294 bits (752), Expect = 8e-80
Identities = 147/165 (89%), Positives = 150/165 (90%), Gaps = 2/165 (1%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXX--QGEPTRVRCS 197
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP QGEP +VRCS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGGSTVGGSSKNGQGEPAKVRCS 60
Query: 198 HLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKA 377
HLLVKHSQSRRPSSWRQEKITR+KEEALELINGYIQKIKSGEEDFESLASQFSDC+SAKA
Sbjct: 61 HLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKA 120
Query: 378 RGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
RGDLG FSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
Sbjct: 121 RGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 165
>ref|NP_001028940.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1, pseudogene
1 [Mus musculus].
Length = 159
Score = 280 bits (717), Expect = 9e-76
Identities = 142/163 (87%), Positives = 148/163 (90%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXXQGEPTRVRCSHL 203
MADE KLPPGW+K MSRSSGR YYFNHITNASQWERP QGEP RVRCSHL
Sbjct: 1 MADE-KLPPGWKKYMSRSSGREYYFNHITNASQWERPSEGSSKNG---QGEPARVRCSHL 56
Query: 204 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 383
LVKHSQSRRPSSWRQEKITR+KEEALELINGYI+KIKSGEEDFESLASQFSDC+SAKARG
Sbjct: 57 LVKHSQSRRPSSWRQEKITRSKEEALELINGYIRKIKSGEEDFESLASQFSDCSSAKARG 116
Query: 384 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
DLGAFSRGQM+KPFEDASFALRTGEMSGPVFT+SGIHIILRTE
Sbjct: 117 DLGAFSRGQMEKPFEDASFALRTGEMSGPVFTESGIHIILRTE 159
>ref|NP_081457.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Mus
musculus].
Length = 131
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL M PVFT
Sbjct: 55 MEKLKSGMR-FSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFT 112
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 113 DPPVKTKFGYHIIM 126
>ref|XP_897983.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
4-like [Mus musculus].
Length = 131
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL M PVFT
Sbjct: 55 MEKLKSGMR-FSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFT 112
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 113 DPPVKTKFGYHIIM 126
>ref|XP_922271.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
4-like [Mus musculus].
Length = 131
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL M PVFT
Sbjct: 55 MEKLKSGMR-FSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFT 112
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 113 DPPVKTKFGYHIIM 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,807,142
Number of extensions: 1105274
Number of successful extensions: 5451
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5384
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008441
(978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006212.1| peptidyl-prolyl cis-trans isomerase NIMA-intera... 303 1e-82
Alignment gi|NP_006214.2| peptidyl-prolyl cis-trans isomerase NIMA-intera... 54 2e-07
>ref|NP_006212.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Homo
sapiens].
Length = 163
Score = 303 bits (777), Expect = 1e-82
Identities = 150/163 (92%), Positives = 151/163 (92%)
Frame = +3
Query: 24 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPXXXXXXXXXXXQGEPTRVRCSHL 203
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP QGEP RVRCSHL
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL 60
Query: 204 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSAKARG 383
LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDC+SAKARG
Sbjct: 61 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG 120
Query: 384 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 512
DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
Sbjct: 121 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
>ref|NP_006214.2| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 isoform 1
[Homo sapiens].
Length = 156
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 IQKIKSGEEDFESLASQFSDCNSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 479
++K+KSG F +A+Q+S+ + A+ GDLG +RG M PF++A+FAL M PVFT
Sbjct: 80 MEKLKSGMR-FNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFT 137
Query: 480 DS------GIHIIL 503
D G HII+
Sbjct: 138 DPPVKTKFGYHIIM 151
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,798,235
Number of extensions: 1352152
Number of successful extensions: 6001
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5916
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008441
(978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1003 0.0
Sscrofa_Chr16 373 e-100
>Sscrofa_Chr02
|| Length = 162569375
Score = 1003 bits (506), Expect = 0.0
Identities = 563/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Plus
Query: 404 aggtcagatgcagaagccatttgaagacgcctcctttgctctgcggacaggggagatgag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68956578 aggtcagatgcagaagccatttgaagacgcctcctttgctctgcggacaggggagatgag 68956637
Query: 464 cgggcccgtgttcacggattccggcatccacatcatcctgcgcacggagtgaggggtgtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68956638 cgggcccgtgttcacggattccggcatccacatcatcctgcgcacggagtgaggggtgtg 68956697
Query: 524 gacagctcaggcctggcctcccggtgtggggtggggcgggacggggtggctgggcccaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68956698 gacagctcaggcctggcctcccggtgtggggtggggcgggacggggtggctgggcccaca 68956757
Query: 584 gaccctgctccctgctgccagccgacctgtgggtccccctgcctgctaacgtcacacagt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68956758 gaccctgctccctgctgccagccgacctgtgggtccccctgcctgctaacgtcacacagt 68956817
Query: 644 atttattgatcccaacatggctggaaggggggctcttcaccatcggggtctccctgccag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68956818 atttattgatcccaacatggctggaaggggggctcttcaccatcggggtctccctgccag 68956877
Query: 704 actcccctcccttttaggaattgacttcagaagggcctggggtggagaggccctccaggc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68956878 actcccctcccttttaggaattgacttcagaagggcctggggtggagaggccctccaggc 68956937
Query: 764 tcccagacccagcaggtgggggtgacctgtcccaaa-agaaggcctagttagccgagcca 822
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 68956938 tcccagacccagcaggtgggggtgacctgtcccaaagagaaggcctagttagccgagcca 68956997
Query: 823 ccccctgtgttccccca-gtccaggaaaggggtnnnnnnncgtgcgggcaagagggcctt 881
||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||
Sbjct: 68956998 ccccctgtgttcccccaggtccaggaagggggtgggggggcgtgcgggcaggagggcctt 68957057
Query: 882 aatttg-ttctggttatgccatgttcctcttttcaa-tgcaaaaagcagatgctccgctt 939
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 68957058 aagttgtttctggttatgccatgttcctcttttcaattgcaaaaagcagatgctccgctt 68957117
Query: 940 ggggccccagctgcctgctgcttcggggctctctctaca 978
||||||| ||||||||||||||||||||||||||||||
Sbjct: 68957118 ggggcccaggctgcctgctgcttcggggctctctctaca 68957156
Score = 1003 bits (506), Expect = 0.0
Identities = 563/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Plus
Query: 404 aggtcagatgcagaagccatttgaagacgcctcctttgctctgcggacaggggagatgag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69058625 aggtcagatgcagaagccatttgaagacgcctcctttgctctgcggacaggggagatgag 69058684
Query: 464 cgggcccgtgttcacggattccggcatccacatcatcctgcgcacggagtgaggggtgtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69058685 cgggcccgtgttcacggattccggcatccacatcatcctgcgcacggagtgaggggtgtg 69058744
Query: 524 gacagctcaggcctggcctcccggtgtggggtggggcgggacggggtggctgggcccaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69058745 gacagctcaggcctggcctcccggtgtggggtggggcgggacggggtggctgggcccaca 69058804
Query: 584 gaccctgctccctgctgccagccgacctgtgggtccccctgcctgctaacgtcacacagt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69058805 gaccctgctccctgctgccagccgacctgtgggtccccctgcctgctaacgtcacacagt 69058864
Query: 644 atttattgatcccaacatggctggaaggggggctcttcaccatcggggtctccctgccag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69058865 atttattgatcccaacatggctggaaggggggctcttcaccatcggggtctccctgccag 69058924
Query: 704 actcccctcccttttaggaattgacttcagaagggcctggggtggagaggccctccaggc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69058925 actcccctcccttttaggaattgacttcagaagggcctggggtggagaggccctccaggc 69058984
Query: 764 tcccagacccagcaggtgggggtgacctgtcccaaa-agaaggcctagttagccgagcca 822
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 69058985 tcccagacccagcaggtgggggtgacctgtcccaaagagaaggcctagttagccgagcca 69059044
Query: 823 ccccctgtgttccccca-gtccaggaaaggggtnnnnnnncgtgcgggcaagagggcctt 881
||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||
Sbjct: 69059045 ccccctgtgttcccccaggtccaggaagggggtgggggggcgtgcgggcaggagggcctt 69059104
Query: 882 aatttg-ttctggttatgccatgttcctcttttcaa-tgcaaaaagcagatgctccgctt 939
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 69059105 aagttgtttctggttatgccatgttcctcttttcaattgcaaaaagcagatgctccgctt 69059164
Query: 940 ggggccccagctgcctgctgcttcggggctctctctaca 978
||||||| ||||||||||||||||||||||||||||||
Sbjct: 69059165 ggggcccaggctgcctgctgcttcggggctctctctaca 69059203
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 79 caggccgggtgtactacttcaatcacatcactaatgccagccagtgggagcggccaagtg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68946261 caggccgggtgtactacttcaatcacatcactaatgccagccagtgggagcggccaagtg 68946320
Query: 139 gcaacagcagtggcggcagcaaaaatggacaaggagagcccaccagggtccgctgttcgc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68946321 gcaacagcagtggcggcagcaaaaatggacaaggagagcccaccagggtccgctgttcgc 68946380
Query: 199 atctgctggtcaagcacagccagtcccggcggccctcatcctggcggcaggagaagatca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68946381 atctgctggtcaagcacagccagtcccggcggccctcatcctggcggcaggagaagatca 68946440
Query: 259 cccggactaaggaggaggctctggagctgatcaacgg 295
|||||||||||||||||||||||||||||||||||||
Sbjct: 68946441 cccggactaaggaggaggctctggagctgatcaacgg 68946477
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 79 caggccgggtgtactacttcaatcacatcactaatgccagccagtgggagcggccaagtg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69048309 caggccgggtgtactacttcaatcacatcactaatgccagccagtgggagcggccaagtg 69048368
Query: 139 gcaacagcagtggcggcagcaaaaatggacaaggagagcccaccagggtccgctgttcgc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69048369 gcaacagcagtggcggcagcaaaaatggacaaggagagcccaccagggtccgctgttcgc 69048428
Query: 199 atctgctggtcaagcacagccagtcccggcggccctcatcctggcggcaggagaagatca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69048429 atctgctggtcaagcacagccagtcccggcggccctcatcctggcggcaggagaagatca 69048488
Query: 259 cccggactaaggaggaggctctggagctgatcaacgg 295
|||||||||||||||||||||||||||||||||||||
Sbjct: 69048489 cccggactaaggaggaggctctggagctgatcaacgg 69048525
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 294 ggctatatccagaagattaagtcgggagaggaggactttgaatctctggcctcacagttc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68955573 ggctatatccagaagattaagtcgggagaggaggactttgaatctctggcctcacagttc 68955632
Query: 354 agcgactgcaactccgccaaggccaggggagacctgggtgccttcagcagaggt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68955633 agcgactgcaactccgccaaggccaggggagacctgggtgccttcagcagaggt 68955686
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 294 ggctatatccagaagattaagtcgggagaggaggactttgaatctctggcctcacagttc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69057620 ggctatatccagaagattaagtcgggagaggaggactttgaatctctggcctcacagttc 69057679
Query: 354 agcgactgcaactccgccaaggccaggggagacctgggtgccttcagcagaggt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69057680 agcgactgcaactccgccaaggccaggggagacctgggtgccttcagcagaggt 69057733
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 2 gggctctgccgcaggagggaagatggcggacgaagagaaactgccacccggctgggagaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68943661 gggctctgccgcaggagggaagatggcggacgaagagaaactgccacccggctgggagaa 68943720
Query: 62 gcgcatgagccgcagctcagg 82
|||||||||||||||||||||
Sbjct: 68943721 gcgcatgagccgcagctcagg 68943741
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 2 gggctctgccgcaggagggaagatggcggacgaagagaaactgccacccggctgggagaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69045711 gggctctgccgcaggagggaagatggcggacgaagagaaactgccacccggctgggagaa 69045770
Query: 62 gcgcatgagccgcagctcagg 82
|||||||||||||||||||||
Sbjct: 69045771 gcgcatgagccgcagctcagg 69045791
>Sscrofa_Chr16
|| Length = 86898991
Score = 373 bits (188), Expect = e-100
Identities = 420/496 (84%), Gaps = 26/496 (5%)
Strand = Plus / Plus
Query: 282 gagctgatcaacggctatatccagaagattaagtcgggagaggaggactttgaatctctg 341
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 76935883 gagctgatcaaaggctacatccaaaagattaagtcgggagaggaggactttgaatctctg 76935942
Query: 342 gcctcacagttcagcgactgcaactccgccaaggccaggggagacctgggt-gccttcag 400
|||| ||||||||| || |||| ||| ||||||||||||||||||| |||| ||||||||
Sbjct: 76935943 gccttacagttcagtgaatgcagctctgccaaggccaggggagaccggggtggccttcag 76936002
Query: 401 cagaggtcagatgcagaagccatttgaagacgcctcctttgctctgcggacaggggag-- 458
|||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||| |
Sbjct: 76936003 cagaggtcggatgcagaagccatttgaagatgcctcctttgcactgtagacaggggcggg 76936062
Query: 459 ------------atgagcgggcccgtgttcacggattccggcatccacatcatcctgcgc 506
|||||| ||||| |||||||||||||||| ||||||||||||||| ||
Sbjct: 76936063 ggtgggggcggaatgagcaggcccatgttcacggattccggtatccacatcatcctgtgc 76936122
Query: 507 acggagtgaggggtgtggacagctcaggcctggcctcccggtgtggggtggggcgggac- 565
||||| |||||| |||||||||| | |||| |||||| || || |||||||||||||
Sbjct: 76936123 acggactgagggatgtggacagccccggccaagcctccagg-atgcggtggggcgggaca 76936181
Query: 566 -----ggggtggctgggcccacagaccctgctccctgctgccagccgacctgtg-ggtcc 619
| || |||||||||| ||||| |||||||||||||||||| |||| ||| ||
Sbjct: 76936182 aggaggaggaggctgggcccgcagactctgctccctgctgccagctgaccagtgccctca 76936241
Query: 620 ccc---tgcctgctaacgtcacacagtatttattgatcccaacatggctggaaggggggc 676
||| |||||||| ||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct: 76936242 ccccaacccctgctaatgtcacactgtatttattgatcccagcatggctgggaggggggc 76936301
Query: 677 tcttcaccatcggggtctccctgccagactcccctcccttttaggaattgacttcagaag 736
||||||||||||||| |||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 76936302 tcttcaccatcgggggctccctgccagactcctcttccctttaggaactgacttcagaag 76936361
Query: 737 ggcctggggtggagag 752
|||| ||||||||||
Sbjct: 76936362 ggcccagggtggagag 76936377
Score = 109 bits (55), Expect = 3e-21
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 41 actgccacccggctgggagaagcgcatgagccgcagctcaggccgggtgtactacttcaa 100
|||||| ||| | |||||||||||||||| | || ||||||||| ||||||| ||||| |
Sbjct: 76935683 actgccgcccaggtgggagaagcgcatgaactgcggctcaggccaggtgtaccacttcga 76935742
Query: 101 tcacatcactaatgccagccagtgggagcggccaagtggcaac 143
|||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 76935743 tcacatcactaacaccagccagtgggagcagccaagtggcaac 76935785
Score = 60.0 bits (30), Expect = 2e-06
Identities = 83/98 (84%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 867 gggcaagagggccttaatttgtt-ctggttatgccatgttcctcttttcaat-gcaaaaa 924
||||| ||||||||||| ||||| ||||||| | ||||||||| |||||| | |||||
Sbjct: 76936456 gggcaggagggccttaagttgtttctggttaggttgtgttcctctattcaattgtaaaaa 76936515
Query: 925 gcagatgctccgcttggggccccagctgcctgctgctt 962
||||||||||| | |||||||| || |||||||||||
Sbjct: 76936516 gcagatgctcctcctggggcccaggcagcctgctgctt 76936553
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,772,853
Number of extensions: 226
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 13
Length of query: 978
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 957
Effective length of database: 2,808,413,156
Effective search space: 2687651390292
Effective search space used: 2687651390292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)