Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008444
(1018 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015568.1| oxidative stress responsive 1 [Bos taurus]. 522 e-150
>ref|NP_001015568.1| oxidative stress responsive 1 [Bos taurus].
Length = 291
Score = 522 bits (1344), Expect(2) = e-150
Identities = 260/282 (92%), Positives = 268/282 (95%)
Frame = +2
Query: 116 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 295
MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEG SVRASVR A +D K K+ CASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGASVRASVRAAVEDAKPKSACASKD 60
Query: 296 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 475
SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIA++SS QLKHKSQTDSPDGSSG
Sbjct: 61 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSS-QLKHKSQTDSPDGSSG 119
Query: 476 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN 655
LGIS PKEFN GECS SLD+NHTGAV EPLRTSVPRLPSESKEEDSSD PQVSQASL+AN
Sbjct: 120 LGISTPKEFNAGECSSSLDTNHTGAVAEPLRTSVPRLPSESKEEDSSDAPQVSQASLQAN 179
Query: 656 DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS 835
DLSDFQSVSKLN GKPC C+GKECQC+RWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS
Sbjct: 180 DLSDFQSVSKLNLGKPCVCIGKECQCKRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS 239
Query: 836 LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK 961
LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK
Sbjct: 240 LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK 281
Score = 27.7 bits (60), Expect(2) = e-150
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 943 LVYSQKMSHMAEMMYT 990
L +KMSHMAEMMYT
Sbjct: 276 LYIPKKMSHMAEMMYT 291
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,949,793
Number of extensions: 959463
Number of successful extensions: 3299
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3298
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008444
(1018 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,565,521
Number of extensions: 988834
Number of successful extensions: 3322
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3316
Number of HSP's successfully gapped: 0
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008444
(1018 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361006.1| PREDICTED: uncharacterized protein C20orf111... 565 e-163
Alignment gi|XP_003360050.1| PREDICTED: uncharacterized protein C20orf111... 126 2e-29
>ref|XP_003361006.1| PREDICTED: uncharacterized protein C20orf111 homolog [Sus scrofa].
Length = 292
Score = 565 bits (1457), Expect(2) = e-163
Identities = 281/282 (99%), Positives = 281/282 (99%)
Frame = +2
Query: 116 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 295
MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 60
Query: 296 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 475
SWHGSTRKSSRGAVRT RRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG
Sbjct: 61 SWHGSTRKSSRGAVRTPRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 120
Query: 476 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN 655
LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN
Sbjct: 121 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN 180
Query: 656 DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS 835
DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS
Sbjct: 181 DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS 240
Query: 836 LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK 961
LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK
Sbjct: 241 LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK 282
Score = 27.7 bits (60), Expect(2) = e-163
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 943 LVYSQKMSHMAEMMYT 990
L +KMSHMAEMMYT
Sbjct: 277 LYIPKKMSHMAEMMYT 292
>ref|XP_003360050.1| PREDICTED: uncharacterized protein C20orf111 homolog [Sus scrofa].
Length = 64
Score = 126 bits (317), Expect = 2e-29
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +2
Query: 116 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 295
MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 60
Query: 296 SWHG 307
SWHG
Sbjct: 61 SWHG 64
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,748,424
Number of extensions: 613495
Number of successful extensions: 1960
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1957
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008444
(1018 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079975.2| oxidative stress responsive 1 [Mus musculus]. 488 e-139
>ref|NP_079975.2| oxidative stress responsive 1 [Mus musculus].
Length = 291
Score = 488 bits (1255), Expect(2) = e-139
Identities = 247/282 (87%), Positives = 255/282 (90%)
Frame = +2
Query: 116 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 295
MKSEAKDGEEESLQTAFKKLRVDASGSI SLSVGEG SVRAS RTAADDTK KT CASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIISLSVGEGPSVRASARTAADDTKPKTMCASKD 60
Query: 296 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 475
SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCST A SS QLKH+SQT+ PDG SG
Sbjct: 61 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTTAPPSSSQLKHRSQTEPPDGISG 120
Query: 476 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN 655
GIS PKEFN GE S SLD NHTGA +EPLR+SV RLPSESK E+ SD QVSQ SL AN
Sbjct: 121 RGISTPKEFNAGENSTSLDVNHTGAAIEPLRSSVLRLPSESKTEELSDATQVSQESLTAN 180
Query: 656 DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS 835
DLSDFQSVSKL+QGKPC CVGKECQC+RWHDMEVYSFSGLQNVPPLAPERRS LEDYSQS
Sbjct: 181 DLSDFQSVSKLSQGKPCVCVGKECQCKRWHDMEVYSFSGLQNVPPLAPERRS-LEDYSQS 239
Query: 836 LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK 961
LHTRTLSGSPRSCSEQARVYVDDVTIEDL+GYMEYYLYIPKK
Sbjct: 240 LHTRTLSGSPRSCSEQARVYVDDVTIEDLAGYMEYYLYIPKK 281
Score = 27.7 bits (60), Expect(2) = e-139
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 943 LVYSQKMSHMAEMMYT 990
L +KMSHMAEMMYT
Sbjct: 276 LYIPKKMSHMAEMMYT 291
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,220,286
Number of extensions: 827535
Number of successful extensions: 2683
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2680
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008444
(1018 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057554.4| oxidative stress responsive 1 [Homo sapiens]. 521 e-149
>ref|NP_057554.4| oxidative stress responsive 1 [Homo sapiens].
Length = 292
Score = 521 bits (1342), Expect(2) = e-149
Identities = 258/282 (91%), Positives = 269/282 (95%)
Frame = +2
Query: 116 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 295
MKSEAKDGEEESLQTAFKKLRVDASGS+ASLSVGEGT VRA VRTA DDTK KTTCASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSVASLSVGEGTGVRAPVRTATDDTKPKTTCASKD 60
Query: 296 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 475
SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIA++SS QLKHKSQTDSPDGSSG
Sbjct: 61 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSSSQLKHKSQTDSPDGSSG 120
Query: 476 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN 655
LGIS PKEF+ GE S SLD+NHTGAVVEPLRTSVPRLPSESK+EDSSD QV QASLKA+
Sbjct: 121 LGISSPKEFSAGESSTSLDANHTGAVVEPLRTSVPRLPSESKKEDSSDATQVPQASLKAS 180
Query: 656 DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQS 835
DLSDFQSVSKLNQGKPCTC+GKECQC+RWHDMEVYSFSGLQ+VPPLAPERRSTLEDYSQS
Sbjct: 181 DLSDFQSVSKLNQGKPCTCIGKECQCKRWHDMEVYSFSGLQSVPPLAPERRSTLEDYSQS 240
Query: 836 LHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKK 961
LH RTLSGSPRSCSEQARV+VDDVTIEDLSGYMEYYLYIPKK
Sbjct: 241 LHARTLSGSPRSCSEQARVFVDDVTIEDLSGYMEYYLYIPKK 282
Score = 27.7 bits (60), Expect(2) = e-149
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 943 LVYSQKMSHMAEMMYT 990
L +KMSHMAEMMYT
Sbjct: 277 LYIPKKMSHMAEMMYT 292
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,932,455
Number of extensions: 980196
Number of successful extensions: 3233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3232
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008444
(1018 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893285.2| Sus scrofa unplaced genomic scaffold ChrUScaf1170 1342 0.0
Sscrofa_Chr17 240 1e-60
>gb|GL893285.2| Sus scrofa unplaced genomic scaffold ChrUScaf1170
Length = 49380
Score = 1342 bits (677), Expect = 0.0
Identities = 690/693 (99%), Gaps = 1/693 (0%)
Strand = Plus / Plus
Query: 306 ggtctacaaggaagtcttcacgaggagcagtgagaacccagcgtcgtcgacgatccaagt 365
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 30276 ggtctacaaggaagtcttcacgaggagcagtgagaaccccgcgtcgtcgacgatccaagt 30335
Query: 366 ctcctgtccttcatcccccgaagtttatacattgcagtacaatagctgctgcttccagct 425
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30336 ctcctgtccttcatcctccgaagtttatacattgcagtacaatagctgctgcttccagct 30395
Query: 426 gccagctcaagcacaagagccagactgactcccctgatggcagcagcgggctgggaattt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30396 gccagctcaagcacaagagccagactgactcccctgatggcagcagcgggctgggaattt 30455
Query: 486 cacctcctaaagagttcaatacaggagaatgctcaccttctctcgattctaatcacacag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30456 cacctcctaaagagttcaatacaggagaatgctcaccttctctcgattctaatcacacag 30515
Query: 546 gggcggttgttgagcctttgagaacctcggttccaaggctcccatcagagagtaaggagg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30516 gggcggttgttgagcctttgagaacctcggttccaaggctcccatcagagagtaaggagg 30575
Query: 606 aagactcctctgatgtcccccaagtctcccaagcaagtctcaaggccaatgatctctctg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30576 aagactcctctgatgtcccccaagtctcccaagcaagtctcaaggccaatgatctctctg 30635
Query: 666 actttcagtctgtttccaagctaaaccagggcaagccgtgtacatgcgtaggcaaggagt 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30636 actttcagtctgtttccaagctaaaccagggcaagccgtgtacatgcgtaggcaaggagt 30695
Query: 726 gccagtgtcagaggtggcatgatatggaggtgtattccttttcaggcctgcagaacgtcc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30696 gccagtgtcagaggtggcatgatatggaggtgtattccttttcaggcctgcagaacgtcc 30755
Query: 786 ctcccttggccccagagcgaagatccacgcttgaggactactctcagtcgcttcacacaa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30756 ctcccttggccccagagcgaagatccacgcttgaggactactctcagtcgcttcacacaa 30815
Query: 846 gaactctgtctggctctccccgctcctgttctgagcaagcccgggtctacgtggatgacg 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30816 gaactctgtctggctctccccgctcctgttctgagcaagcccgggtctacgtggatgacg 30875
Query: 906 tgaccatcgaggacctgtcaggctacatggaatattacttgtatattcccaa-aaaatgt 964
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 30876 tgaccatcgaggacctgtcaggctacatggaatattacttgtatattcccaagaaaatgt 30935
Query: 965 cccacatggccgaaatgatgtacacctgagagc 997
|||||||||||||||||||||||||||||||||
Sbjct: 30936 cccacatggccgaaatgatgtacacctgagagc 30968
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 192 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26292 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 26351
Query: 252 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26352 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 26408
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 115 aatgaaatctgaagccaaggatggagaggaggagagtctacaaaccgctttcaagaagtt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22820 aatgaaatctgaagccaaggatggagaggaggagagtctacaaaccgctttcaagaagtt 22879
Query: 175 aagagtggatgcatcagggt 194
||||||||||||||||||||
Sbjct: 22880 aagagtggatgcatcagggt 22899
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 41 agactggctcaccggagcgaccctgccgcgaggag 75
|||||||||||||||||||||||||||||||||||
Sbjct: 19001 agactggctcaccggagcgaccctgccgcgaggag 19035
>Sscrofa_Chr17
|| Length = 69701581
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 74 agtattaacggtaacatccatagtagtgtaaaaactttcacaatgaaatctgaagccaag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52130390 agtattaacggtaacatccatagtagtgtaaaaactttcacaatgaaatctgaagccaag 52130331
Query: 134 gatggagaggaggagagtctacaaaccgctttcaagaagttaagagtggatgcatcaggg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52130330 gatggagaggaggagagtctacaaaccgctttcaagaagttaagagtggatgcatcaggg 52130271
Query: 194 t 194
|
Sbjct: 52130270 t 52130270
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 192 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 251
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Sbjct: 52127010 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 52126951
Query: 252 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52126950 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 52126894
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 1 gtcaggcgcgacgatcggggagagacgatctgaactgacgagactggctcaccggagcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52134324 gtcaggcgcgacgatcggggagagacgatctgaactgacgagactggctcaccggagcga 52134265
Query: 61 ccctgccgcgaggag 75
|||||||||||||||
Sbjct: 52134264 ccctgccgcgaggag 52134250
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,846,891
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 7
Length of query: 1018
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 997
Effective length of database: 2,808,413,156
Effective search space: 2799987916532
Effective search space used: 2799987916532
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)