Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008445
(806 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015568.1| oxidative stress responsive 1 [Bos taurus]. 410 e-115
>ref|NP_001015568.1| oxidative stress responsive 1 [Bos taurus].
Length = 291
Score = 410 bits (1055), Expect = e-115
Identities = 204/228 (89%), Positives = 213/228 (93%)
Frame = +3
Query: 123 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 302
MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEG SVRASVR A +D K K+ CASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGASVRASVRAAVEDAKPKSACASKD 60
Query: 303 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 482
SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIA++SS QLKHKSQTDSPDGSSG
Sbjct: 61 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSS-QLKHKSQTDSPDGSSG 119
Query: 483 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSASKEEDSSDVPQVSQASLKAN 662
LGIS PKEFN GECS SLD+NHTGAV EPLRTSVPRLPS SKEEDSSD PQVSQASL+AN
Sbjct: 120 LGISTPKEFNAGECSSSLDTNHTGAVAEPLRTSVPRLPSESKEEDSSDAPQVSQASLQAN 179
Query: 663 DLSDFQSVSKLNQGKPCTCVGKECQCQKWHDMEVYSFSGLQNVPPLAP 806
DLSDFQSVSKLN GKPC C+GKECQC++WHDMEVYSFSGLQNVPPLAP
Sbjct: 180 DLSDFQSVSKLNLGKPCVCIGKECQCKRWHDMEVYSFSGLQNVPPLAP 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,431,557
Number of extensions: 713603
Number of successful extensions: 2271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2270
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 168
Effective length of database: 14,372,574
Effective search space: 2414592432
Effective search space used: 2414592432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008445
(806 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,770,141
Number of extensions: 739123
Number of successful extensions: 2261
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2259
Number of HSP's successfully gapped: 0
Length of query: 268
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 167
Effective length of database: 15,507,568
Effective search space: 2589763856
Effective search space used: 2589763856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008445
(806 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361006.1| PREDICTED: uncharacterized protein C20orf111... 454 e-128
Alignment gi|XP_003360050.1| PREDICTED: uncharacterized protein C20orf111... 126 1e-29
>ref|XP_003361006.1| PREDICTED: uncharacterized protein C20orf111 homolog [Sus scrofa].
Length = 292
Score = 454 bits (1168), Expect = e-128
Identities = 225/228 (98%), Positives = 226/228 (99%)
Frame = +3
Query: 123 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 302
MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 60
Query: 303 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 482
SWHGSTRKSSRGAVRT RRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG
Sbjct: 61 SWHGSTRKSSRGAVRTPRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 120
Query: 483 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSASKEEDSSDVPQVSQASLKAN 662
LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPS SKEEDSSDVPQVSQASLKAN
Sbjct: 121 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKAN 180
Query: 663 DLSDFQSVSKLNQGKPCTCVGKECQCQKWHDMEVYSFSGLQNVPPLAP 806
DLSDFQSVSKLNQGKPCTCVGKECQCQ+WHDMEVYSFSGLQNVPPLAP
Sbjct: 181 DLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAP 228
>ref|XP_003360050.1| PREDICTED: uncharacterized protein C20orf111 homolog [Sus scrofa].
Length = 64
Score = 126 bits (317), Expect = 1e-29
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +3
Query: 123 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 302
MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 60
Query: 303 SWHG 314
SWHG
Sbjct: 61 SWHG 64
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,283,855
Number of extensions: 457288
Number of successful extensions: 1399
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,928,923
Effective search space: 1526845833
Effective search space used: 1526845833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008445
(806 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079975.2| oxidative stress responsive 1 [Mus musculus]. 384 e-107
>ref|NP_079975.2| oxidative stress responsive 1 [Mus musculus].
Length = 291
Score = 384 bits (986), Expect = e-107
Identities = 193/228 (84%), Positives = 201/228 (88%)
Frame = +3
Query: 123 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 302
MKSEAKDGEEESLQTAFKKLRVDASGSI SLSVGEG SVRAS RTAADDTK KT CASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSIISLSVGEGPSVRASARTAADDTKPKTMCASKD 60
Query: 303 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 482
SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCST A SS QLKH+SQT+ PDG SG
Sbjct: 61 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTTAPPSSSQLKHRSQTEPPDGISG 120
Query: 483 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSASKEEDSSDVPQVSQASLKAN 662
GIS PKEFN GE S SLD NHTGA +EPLR+SV RLPS SK E+ SD QVSQ SL AN
Sbjct: 121 RGISTPKEFNAGENSTSLDVNHTGAAIEPLRSSVLRLPSESKTEELSDATQVSQESLTAN 180
Query: 663 DLSDFQSVSKLNQGKPCTCVGKECQCQKWHDMEVYSFSGLQNVPPLAP 806
DLSDFQSVSKL+QGKPC CVGKECQC++WHDMEVYSFSGLQNVPPLAP
Sbjct: 181 DLSDFQSVSKLSQGKPCVCVGKECQCKRWHDMEVYSFSGLQNVPPLAP 228
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,808,762
Number of extensions: 615534
Number of successful extensions: 1949
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1948
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 168
Effective length of database: 12,613,959
Effective search space: 2119145112
Effective search space used: 2119145112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008445
(806 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057554.4| oxidative stress responsive 1 [Homo sapiens]. 413 e-116
>ref|NP_057554.4| oxidative stress responsive 1 [Homo sapiens].
Length = 292
Score = 413 bits (1062), Expect = e-116
Identities = 204/228 (89%), Positives = 215/228 (94%)
Frame = +3
Query: 123 MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKD 302
MKSEAKDGEEESLQTAFKKLRVDASGS+ASLSVGEGT VRA VRTA DDTK KTTCASKD
Sbjct: 1 MKSEAKDGEEESLQTAFKKLRVDASGSVASLSVGEGTGVRAPVRTATDDTKPKTTCASKD 60
Query: 303 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSG 482
SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIA++SS QLKHKSQTDSPDGSSG
Sbjct: 61 SWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSSSQLKHKSQTDSPDGSSG 120
Query: 483 LGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSASKEEDSSDVPQVSQASLKAN 662
LGIS PKEF+ GE S SLD+NHTGAVVEPLRTSVPRLPS SK+EDSSD QV QASLKA+
Sbjct: 121 LGISSPKEFSAGESSTSLDANHTGAVVEPLRTSVPRLPSESKKEDSSDATQVPQASLKAS 180
Query: 663 DLSDFQSVSKLNQGKPCTCVGKECQCQKWHDMEVYSFSGLQNVPPLAP 806
DLSDFQSVSKLNQGKPCTC+GKECQC++WHDMEVYSFSGLQ+VPPLAP
Sbjct: 181 DLSDFQSVSKLNQGKPCTCIGKECQCKRWHDMEVYSFSGLQSVPPLAP 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,257,050
Number of extensions: 732114
Number of successful extensions: 2340
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2340
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 167
Effective length of database: 14,967,800
Effective search space: 2499622600
Effective search space used: 2499622600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008445
(806 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893285.2| Sus scrofa unplaced genomic scaffold ChrUScaf1170 932 0.0
Sscrofa_Chr17 240 1e-60
>gb|GL893285.2| Sus scrofa unplaced genomic scaffold ChrUScaf1170
Length = 49380
Score = 932 bits (470), Expect = 0.0
Identities = 488/494 (98%)
Strand = Plus / Plus
Query: 313 ggtctacaaggaagtcttcacgaggagcagtgagaacccagcgtcgtcgacgatccaagt 372
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 30276 ggtctacaaggaagtcttcacgaggagcagtgagaaccccgcgtcgtcgacgatccaagt 30335
Query: 373 ctcctgtccttcatcccccgaagtttatacattgcagtacaatagctgctgcttccagct 432
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30336 ctcctgtccttcatcctccgaagtttatacattgcagtacaatagctgctgcttccagct 30395
Query: 433 gccagctcaagcacaagagccagactgactcccctgatggcagcagcgggctgggaattt 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30396 gccagctcaagcacaagagccagactgactcccctgatggcagcagcgggctgggaattt 30455
Query: 493 cacctcctaaagagttcaatacaggagaatgctcaccttctctcgattctaatcacacag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30456 cacctcctaaagagttcaatacaggagaatgctcaccttctctcgattctaatcacacag 30515
Query: 553 gggcggttgttgagcctttgagaacctcggttccaaggctcccatcagcgagtaaggagg 612
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 30516 gggcggttgttgagcctttgagaacctcggttccaaggctcccatcagagagtaaggagg 30575
Query: 613 aagactcctctgatgtcccccaagtctcccaagcaagtctcaaggccaatgatctctctg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30576 aagactcctctgatgtcccccaagtctcccaagcaagtctcaaggccaatgatctctctg 30635
Query: 673 actttcagtctgtttccaagctaaaccagggcaagccgtgtacatgcgtaggcaaggagt 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30636 actttcagtctgtttccaagctaaaccagggcaagccgtgtacatgcgtaggcaaggagt 30695
Query: 733 gccagtgtcagaagtggcatgatatggaggtgtattccttttcaggcctgcaaaacgtcc 792
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 30696 gccagtgtcagaggtggcatgatatggaggtgtattccttttcaggcctgcagaacgtcc 30755
Query: 793 ctcccctggcccca 806
||||| ||||||||
Sbjct: 30756 ctcccttggcccca 30769
Score = 232 bits (117), Expect = 2e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 199 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26292 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 26351
Query: 259 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26352 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 26408
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 122 aatgaaatctgaagccaaggatggagaggaggagagtctacaaaccgctttcaagaagtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22820 aatgaaatctgaagccaaggatggagaggaggagagtctacaaaccgctttcaagaagtt 22879
Query: 182 aagagtggatgcatcagggt 201
||||||||||||||||||||
Sbjct: 22880 aagagtggatgcatcagggt 22899
Score = 69.9 bits (35), Expect = 2e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 48 agactggctcaccggagcgaccctgccgcgaggag 82
|||||||||||||||||||||||||||||||||||
Sbjct: 19001 agactggctcaccggagcgaccctgccgcgaggag 19035
>Sscrofa_Chr17
|| Length = 69701581
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 81 agtattaacggtaacatccatagtagtgtaaaaactttcacaatgaaatctgaagccaag 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52130390 agtattaacggtaacatccatagtagtgtaaaaactttcacaatgaaatctgaagccaag 52130331
Query: 141 gatggagaggaggagagtctacaaaccgctttcaagaagttaagagtggatgcatcaggg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52130330 gatggagaggaggagagtctacaaaccgctttcaagaagttaagagtggatgcatcaggg 52130271
Query: 201 t 201
|
Sbjct: 52130270 t 52130270
Score = 232 bits (117), Expect = 2e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 199 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52127010 ggtccatagcatctctgtctgttggagaaggcacgagtgtgagagcatcagtcagaacag 52126951
Query: 259 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52126950 cagcagatgatacaaaactgaaaaccacatgtgcatctaaagacagttggcacgggt 52126894
Score = 161 bits (81), Expect = 7e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 2 gggtcagtcaggcgcgacgatcggggagagacgatctgaactgacgagactggctcaccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52134330 gggtcagtcaggcgcgacgatcggggagagacgatctgaactgacgagactggctcaccg 52134271
Query: 62 gagcgaccctgccgcgaggag 82
|||||||||||||||||||||
Sbjct: 52134270 gagcgaccctgccgcgaggag 52134250
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,751,420
Number of extensions: 126
Number of successful extensions: 126
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 7
Length of query: 806
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 785
Effective length of database: 2,808,413,156
Effective search space: 2204604327460
Effective search space used: 2204604327460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)