Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008450
(1480 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106765.1| 28S ribosomal protein S29, mitochondrial [Bo... 609 0.0
>ref|NP_001106765.1| 28S ribosomal protein S29, mitochondrial [Bos taurus].
Length = 397
Score = 609 bits (1571), Expect(2) = 0.0
Identities = 295/330 (89%), Positives = 309/330 (93%)
Frame = +2
Query: 362 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 541
MLKG+TRL+SRVHKLDPG ++GTQAPQ AHLDNQVP + RAISRT E+DPAKH E
Sbjct: 1 MLKGMTRLVSRVHKLDPGRFSHLGTQAPQCPVAHLDNQVPTERTRAISRTLENDPAKHGE 60
Query: 542 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 721
QH GQHYNIS+QELKTVFPHGLPPRF MQVKTFNEACLMVRKPALELLHYLKNTNFAHPA
Sbjct: 61 QHVGQHYNISIQELKTVFPHGLPPRFVMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 120
Query: 722 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 901
VRYVLYGEKGTGKTLSLCHI+HFCAKQ+WLILHIPDAH+WVKNCRDLLQS YNKQRFDQP
Sbjct: 121 VRYVLYGEKGTGKTLSLCHIIHFCAKQDWLILHIPDAHLWVKNCRDLLQSTYNKQRFDQP 180
Query: 902 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 1081
LEAS WLKNFKTANE FLSQIKVQ+KY+WNKRESTEKG PL EVVEQGIMRVRNATDAVG
Sbjct: 181 LEASIWLKNFKTANERFLSQIKVQDKYIWNKRESTEKGSPLAEVVEQGIMRVRNATDAVG 240
Query: 1082 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 1261
IVLKELKRQSSLG+F LLVAVDGVNALWGRTTLKREDKSPI PEELALI+NLRKMVKNDW
Sbjct: 241 IVLKELKRQSSLGVFRLLVAVDGVNALWGRTTLKREDKSPITPEELALIYNLRKMVKNDW 300
Query: 1262 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
QGGAIVLTVSQTGSLFKPR AYLPQELLGK
Sbjct: 301 QGGAIVLTVSQTGSLFKPRKAYLPQELLGK 330
Score = 95.9 bits (237), Expect(2) = 0.0
Identities = 42/49 (85%), Positives = 43/49 (87%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFD LDPFIPILVSNY PKEFE CIQYYLENNWLQHEKAHT
Sbjct: 324 PQELLGKEGFDTLDPFIPILVSNYNPKEFEGCIQYYLENNWLQHEKAHT 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,654,800
Number of extensions: 1415798
Number of successful extensions: 4612
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4596
Number of HSP's successfully gapped: 2
Length of query: 493
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 387
Effective length of database: 14,174,046
Effective search space: 5485355802
Effective search space used: 5485355802
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008450
(1480 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537250.1| PREDICTED: similar to death-associated protein ... 555 e-180
>ref|XP_537250.1| PREDICTED: similar to death-associated protein 3 [Canis familiaris].
Length = 393
Score = 555 bits (1429), Expect(2) = e-180
Identities = 272/330 (82%), Positives = 295/330 (89%)
Frame = +2
Query: 362 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 541
ML+ +TRL+S +LDPG L+ G+ APQSL AHLD+Q PRA+S TSEDDPA+H E
Sbjct: 1 MLRRMTRLLSGARQLDPGRFLHRGSPAPQSLDAHLDDQ----RPRAVSCTSEDDPARHGE 56
Query: 542 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 721
QH HY+I LQ+LKTVFP GLPPRF MQVKTFNEACLMVRKPALELLHYLKNTNFAHPA
Sbjct: 57 QHAALHYHIPLQDLKTVFPQGLPPRFIMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 116
Query: 722 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 901
VRYVLYGEKGTGKTLSLCH++HFCAKQ+WLILHIPDAH+WVKNCR LLQS+YNKQRFDQP
Sbjct: 117 VRYVLYGEKGTGKTLSLCHVVHFCAKQDWLILHIPDAHLWVKNCRGLLQSSYNKQRFDQP 176
Query: 902 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 1081
+EAS WLKNFKTANE FLSQIKVQEKYVWNKRESTEKG PLG VVEQG+ RVRNATDAVG
Sbjct: 177 VEASIWLKNFKTANERFLSQIKVQEKYVWNKRESTEKGSPLGAVVEQGLTRVRNATDAVG 236
Query: 1082 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 1261
IVLKELK QS LG FHLLVAVDGVNALWGRT+LKREDKS IAPEELAL+ +LRKMV+NDW
Sbjct: 237 IVLKELKNQSCLGAFHLLVAVDGVNALWGRTSLKREDKSLIAPEELALVCSLRKMVRNDW 296
Query: 1262 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
GGAIVLT+SQTGSLFKPR AYLPQELLGK
Sbjct: 297 HGGAIVLTLSQTGSLFKPRKAYLPQELLGK 326
Score = 96.7 bits (239), Expect(2) = e-180
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLEN WLQHEKAHT
Sbjct: 320 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENKWLQHEKAHT 368
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,008,382
Number of extensions: 1454304
Number of successful extensions: 4891
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4884
Number of HSP's successfully gapped: 2
Length of query: 493
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 386
Effective length of database: 15,307,552
Effective search space: 5908715072
Effective search space used: 5908715072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008450
(1480 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361167.1| PREDICTED: 28S ribosomal protein S29, mitoch... 674 0.0
Alignment gi|XP_003355180.1| PREDICTED: 28S ribosomal protein S29, mitoch... 674 0.0
Alignment gi|XP_003355181.1| PREDICTED: 28S ribosomal protein S29, mitoch... 572 0.0
>ref|XP_003361167.1| PREDICTED: 28S ribosomal protein S29, mitochondrial-like [Sus
scrofa].
Length = 397
Score = 674 bits (1740), Expect(2) = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Frame = +2
Query: 362 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 541
MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE
Sbjct: 1 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 60
Query: 542 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 721
QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA
Sbjct: 61 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 120
Query: 722 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 901
VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP
Sbjct: 121 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 180
Query: 902 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 1081
LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG
Sbjct: 181 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 240
Query: 1082 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 1261
IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW
Sbjct: 241 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 300
Query: 1262 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
QGGAIVLTVSQTGSLFKPRNAYLPQELLGK
Sbjct: 301 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 330
Score = 99.0 bits (245), Expect(2) = 0.0
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKAHT
Sbjct: 324 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAHT 372
>ref|XP_003355180.1| PREDICTED: 28S ribosomal protein S29, mitochondrial isoform 1 [Sus
scrofa].
Length = 397
Score = 674 bits (1740), Expect(2) = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Frame = +2
Query: 362 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 541
MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE
Sbjct: 1 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 60
Query: 542 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 721
QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA
Sbjct: 61 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 120
Query: 722 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 901
VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP
Sbjct: 121 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 180
Query: 902 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 1081
LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG
Sbjct: 181 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 240
Query: 1082 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 1261
IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW
Sbjct: 241 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 300
Query: 1262 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
QGGAIVLTVSQTGSLFKPRNAYLPQELLGK
Sbjct: 301 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 330
Score = 99.0 bits (245), Expect(2) = 0.0
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKAHT
Sbjct: 324 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAHT 372
>ref|XP_003355181.1| PREDICTED: 28S ribosomal protein S29, mitochondrial isoform 2 [Sus
scrofa].
Length = 356
Score = 572 bits (1474), Expect(2) = 0.0
Identities = 289/330 (87%), Positives = 289/330 (87%)
Frame = +2
Query: 362 MLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHRE 541
MLKGVTRLISRVHK AKHRE
Sbjct: 1 MLKGVTRLISRVHK-----------------------------------------AKHRE 19
Query: 542 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 721
QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA
Sbjct: 20 QHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHPA 79
Query: 722 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 901
VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP
Sbjct: 80 VRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQP 139
Query: 902 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 1081
LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG
Sbjct: 140 LEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVG 199
Query: 1082 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 1261
IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW
Sbjct: 200 IVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDW 259
Query: 1262 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
QGGAIVLTVSQTGSLFKPRNAYLPQELLGK
Sbjct: 260 QGGAIVLTVSQTGSLFKPRNAYLPQELLGK 289
Score = 99.0 bits (245), Expect(2) = 0.0
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKAHT
Sbjct: 283 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAHT 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,179,056
Number of extensions: 908406
Number of successful extensions: 3078
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3069
Number of HSP's successfully gapped: 7
Length of query: 493
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,779,541
Effective search space: 3424020990
Effective search space used: 3424020990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008450
(1480 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075370.2| 28S ribosomal protein S29, mitochondrial isofor... 549 e-174
Alignment gi|NP_001158005.1| 28S ribosomal protein S29, mitochondrial iso... 506 e-160
>ref|NP_075370.2| 28S ribosomal protein S29, mitochondrial isoform 2 [Mus musculus].
Length = 396
Score = 549 bits (1415), Expect(2) = e-174
Identities = 265/332 (79%), Positives = 294/332 (88%)
Frame = +2
Query: 356 EVMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKH 535
+ ML G+TRL SRV KLDP L+M QA Q+ +QVP + PR +SRTS+ DPAKH
Sbjct: 4 KTMLTGITRLFSRVQKLDPRCFLHMSVQATQN------SQVPAERPRTVSRTSDSDPAKH 57
Query: 536 REQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAH 715
EQHEGQHY+I LQ+LKTVFPHGLPPR+ MQVKTF EACLMVRKPALELL YLKNTNFAH
Sbjct: 58 GEQHEGQHYSIPLQDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLGYLKNTNFAH 117
Query: 716 PAVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFD 895
PAVRY+LYGEKGTGKTLSLCH +HFCA+ +WLILHIPDAH+WVKNCR+LLQS +NKQRFD
Sbjct: 118 PAVRYLLYGEKGTGKTLSLCHAVHFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRFD 177
Query: 896 QPLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDA 1075
QPLEASTWLKNFKT NE FLSQIKVQEKYVWNKRESTEKG PLGEVVEQG+ RVRNATDA
Sbjct: 178 QPLEASTWLKNFKTTNERFLSQIKVQEKYVWNKRESTEKGSPLGEVVEQGLTRVRNATDA 237
Query: 1076 VGIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKN 1255
VG+VLKELK QS+LG+FHLLVAVDGVNALWGRTTLK+ED++ IAPEEL+L+HNLRKMVKN
Sbjct: 238 VGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTLIAPEELSLVHNLRKMVKN 297
Query: 1256 DWQGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
DW GGAIVL++SQTGSLFK R AYLP ELLGK
Sbjct: 298 DWHGGAIVLSLSQTGSLFKSRTAYLPHELLGK 329
Score = 83.2 bits (204), Expect(2) = e-174
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P GKEGF+AL+PF+PIL+ NY PKEFES QYYLENNWLQHEKA T
Sbjct: 323 PHELLGKEGFNALEPFLPILIPNYNPKEFESSFQYYLENNWLQHEKAST 371
>ref|NP_001158005.1| 28S ribosomal protein S29, mitochondrial isoform 1 [Mus musculus].
Length = 366
Score = 506 bits (1304), Expect(2) = e-160
Identities = 242/304 (79%), Positives = 270/304 (88%)
Frame = +2
Query: 356 EVMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKH 535
+ ML G+TRL SRV KLDP L+M QA Q+ +QVP + PR +SRTS+ DPAKH
Sbjct: 4 KTMLTGITRLFSRVQKLDPRCFLHMSVQATQN------SQVPAERPRTVSRTSDSDPAKH 57
Query: 536 REQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAH 715
EQHEGQHY+I LQ+LKTVFPHGLPPR+ MQVKTF EACLMVRKPALELL YLKNTNFAH
Sbjct: 58 GEQHEGQHYSIPLQDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLGYLKNTNFAH 117
Query: 716 PAVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFD 895
PAVRY+LYGEKGTGKTLSLCH +HFCA+ +WLILHIPDAH+WVKNCR+LLQS +NKQRFD
Sbjct: 118 PAVRYLLYGEKGTGKTLSLCHAVHFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRFD 177
Query: 896 QPLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDA 1075
QPLEASTWLKNFKT NE FLSQIKVQEKYVWNKRESTEKG PLGEVVEQG+ RVRNATDA
Sbjct: 178 QPLEASTWLKNFKTTNERFLSQIKVQEKYVWNKRESTEKGSPLGEVVEQGLTRVRNATDA 237
Query: 1076 VGIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKN 1255
VG+VLKELK QS+LG+FHLLVAVDGVNALWGRTTLK+ED++ IAPEEL+L+HNLRKMVKN
Sbjct: 238 VGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTLIAPEELSLVHNLRKMVKN 297
Query: 1256 DWQG 1267
DW+G
Sbjct: 298 DWEG 301
Score = 77.4 bits (189), Expect(2) = e-160
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = +3
Query: 1353 EGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
EGF+AL+PF+PIL+ NY PKEFES QYYLENNWLQHEKA T
Sbjct: 300 EGFNALEPFLPILIPNYNPKEFESSFQYYLENNWLQHEKAST 341
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,652,185
Number of extensions: 1217422
Number of successful extensions: 4040
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4031
Number of HSP's successfully gapped: 4
Length of query: 493
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 388
Effective length of database: 12,463,779
Effective search space: 4835946252
Effective search space used: 4835946252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008450
(1480 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186778.1| 28S ribosomal protein S29, mitochondrial iso... 611 0.0
Alignment gi|NP_004623.1| 28S ribosomal protein S29, mitochondrial isofor... 611 0.0
Alignment gi|NP_387506.1| 28S ribosomal protein S29, mitochondrial isofor... 611 0.0
Alignment gi|NP_001186779.1| 28S ribosomal protein S29, mitochondrial iso... 532 e-173
Alignment gi|NP_001186780.1| 28S ribosomal protein S29, mitochondrial iso... 524 e-170
>ref|NP_001186778.1| 28S ribosomal protein S29, mitochondrial isoform 1 [Homo sapiens].
Length = 398
Score = 611 bits (1575), Expect(2) = 0.0
Identities = 290/331 (87%), Positives = 317/331 (95%)
Frame = +2
Query: 359 VMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHR 538
+MLKG+TRLISR+HKLDPG L+MGTQA QS+AAHLDNQVPV+SPRAISRT+E+DPAKH
Sbjct: 1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG 60
Query: 539 EQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHP 718
+QHEGQHYNIS Q+L+TVFPHGLPPRF MQVKTF+EACLMVRKPALELLHYLKNT+FA+P
Sbjct: 61 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 120
Query: 719 AVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQ 898
A+RY+LYGEKGTGKTLSLCH++HFCAKQ+WLILHIPDAH+WVKNCRDLLQS+YNKQRFDQ
Sbjct: 121 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 180
Query: 899 PLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAV 1078
PLEASTWLKNFKT NE FL+QIKVQEKYVWNKRESTEKG PLGEVVEQGI RVRNATDAV
Sbjct: 181 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 240
Query: 1079 GIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKND 1258
GIVLKELKRQSSLG+FHLLVAVDG+NALWGRTTLKREDKSPIAPEELAL+HNLRKM+KND
Sbjct: 241 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 300
Query: 1259 WQGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
W GGAIV +SQTGSLFKPR AYLPQELLGK
Sbjct: 301 WHGGAIVSALSQTGSLFKPRKAYLPQELLGK 331
Score = 95.1 bits (235), Expect(2) = 0.0
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKA T
Sbjct: 325 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPT 373
>ref|NP_004623.1| 28S ribosomal protein S29, mitochondrial isoform 1 [Homo sapiens].
Length = 398
Score = 611 bits (1575), Expect(2) = 0.0
Identities = 290/331 (87%), Positives = 317/331 (95%)
Frame = +2
Query: 359 VMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHR 538
+MLKG+TRLISR+HKLDPG L+MGTQA QS+AAHLDNQVPV+SPRAISRT+E+DPAKH
Sbjct: 1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG 60
Query: 539 EQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHP 718
+QHEGQHYNIS Q+L+TVFPHGLPPRF MQVKTF+EACLMVRKPALELLHYLKNT+FA+P
Sbjct: 61 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 120
Query: 719 AVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQ 898
A+RY+LYGEKGTGKTLSLCH++HFCAKQ+WLILHIPDAH+WVKNCRDLLQS+YNKQRFDQ
Sbjct: 121 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 180
Query: 899 PLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAV 1078
PLEASTWLKNFKT NE FL+QIKVQEKYVWNKRESTEKG PLGEVVEQGI RVRNATDAV
Sbjct: 181 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 240
Query: 1079 GIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKND 1258
GIVLKELKRQSSLG+FHLLVAVDG+NALWGRTTLKREDKSPIAPEELAL+HNLRKM+KND
Sbjct: 241 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 300
Query: 1259 WQGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
W GGAIV +SQTGSLFKPR AYLPQELLGK
Sbjct: 301 WHGGAIVSALSQTGSLFKPRKAYLPQELLGK 331
Score = 95.1 bits (235), Expect(2) = 0.0
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKA T
Sbjct: 325 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPT 373
>ref|NP_387506.1| 28S ribosomal protein S29, mitochondrial isoform 1 [Homo sapiens].
Length = 398
Score = 611 bits (1575), Expect(2) = 0.0
Identities = 290/331 (87%), Positives = 317/331 (95%)
Frame = +2
Query: 359 VMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHR 538
+MLKG+TRLISR+HKLDPG L+MGTQA QS+AAHLDNQVPV+SPRAISRT+E+DPAKH
Sbjct: 1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG 60
Query: 539 EQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHP 718
+QHEGQHYNIS Q+L+TVFPHGLPPRF MQVKTF+EACLMVRKPALELLHYLKNT+FA+P
Sbjct: 61 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 120
Query: 719 AVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQ 898
A+RY+LYGEKGTGKTLSLCH++HFCAKQ+WLILHIPDAH+WVKNCRDLLQS+YNKQRFDQ
Sbjct: 121 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 180
Query: 899 PLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAV 1078
PLEASTWLKNFKT NE FL+QIKVQEKYVWNKRESTEKG PLGEVVEQGI RVRNATDAV
Sbjct: 181 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 240
Query: 1079 GIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKND 1258
GIVLKELKRQSSLG+FHLLVAVDG+NALWGRTTLKREDKSPIAPEELAL+HNLRKM+KND
Sbjct: 241 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 300
Query: 1259 WQGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
W GGAIV +SQTGSLFKPR AYLPQELLGK
Sbjct: 301 WHGGAIVSALSQTGSLFKPRKAYLPQELLGK 331
Score = 95.1 bits (235), Expect(2) = 0.0
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKA T
Sbjct: 325 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPT 373
>ref|NP_001186779.1| 28S ribosomal protein S29, mitochondrial isoform 2 [Homo sapiens].
Length = 364
Score = 532 bits (1371), Expect(2) = e-173
Identities = 262/331 (79%), Positives = 286/331 (86%)
Frame = +2
Query: 359 VMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHR 538
+MLKG+TRLISR+HKLDPG L+MGTQA QS+AAHLDNQVPV+SPRAISRT+E+DP
Sbjct: 1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP---- 56
Query: 539 EQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHP 718
VKTF+EACLMVRKPALELLHYLKNT+FA+P
Sbjct: 57 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP 86
Query: 719 AVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQ 898
A+RY+LYGEKGTGKTLSLCH++HFCAKQ+WLILHIPDAH+WVKNCRDLLQS+YNKQRFDQ
Sbjct: 87 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 146
Query: 899 PLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAV 1078
PLEASTWLKNFKT NE FL+QIKVQEKYVWNKRESTEKG PLGEVVEQGI RVRNATDAV
Sbjct: 147 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 206
Query: 1079 GIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKND 1258
GIVLKELKRQSSLG+FHLLVAVDG+NALWGRTTLKREDKSPIAPEELAL+HNLRKM+KND
Sbjct: 207 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 266
Query: 1259 WQGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
W GGAIV +SQTGSLFKPR AYLPQELLGK
Sbjct: 267 WHGGAIVSALSQTGSLFKPRKAYLPQELLGK 297
Score = 95.1 bits (235), Expect(2) = e-173
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKA T
Sbjct: 291 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPT 339
>ref|NP_001186780.1| 28S ribosomal protein S29, mitochondrial isoform 3 [Homo sapiens].
Length = 357
Score = 524 bits (1350), Expect(2) = e-170
Identities = 257/331 (77%), Positives = 279/331 (84%)
Frame = +2
Query: 359 VMLKGVTRLISRVHKLDPGHVLYMGTQAPQSLAAHLDNQVPVKSPRAISRTSEDDPAKHR 538
+MLKG+TRLISR+HK AKH
Sbjct: 1 MMLKGITRLISRIHK-----------------------------------------AKHG 19
Query: 539 EQHEGQHYNISLQELKTVFPHGLPPRFAMQVKTFNEACLMVRKPALELLHYLKNTNFAHP 718
+QHEGQHYNIS Q+L+TVFPHGLPPRF MQVKTF+EACLMVRKPALELLHYLKNT+FA+P
Sbjct: 20 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP 79
Query: 719 AVRYVLYGEKGTGKTLSLCHILHFCAKQNWLILHIPDAHIWVKNCRDLLQSNYNKQRFDQ 898
A+RY+LYGEKGTGKTLSLCH++HFCAKQ+WLILHIPDAH+WVKNCRDLLQS+YNKQRFDQ
Sbjct: 80 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ 139
Query: 899 PLEASTWLKNFKTANEHFLSQIKVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAV 1078
PLEASTWLKNFKT NE FL+QIKVQEKYVWNKRESTEKG PLGEVVEQGI RVRNATDAV
Sbjct: 140 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV 199
Query: 1079 GIVLKELKRQSSLGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKND 1258
GIVLKELKRQSSLG+FHLLVAVDG+NALWGRTTLKREDKSPIAPEELAL+HNLRKM+KND
Sbjct: 200 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND 259
Query: 1259 WQGGAIVLTVSQTGSLFKPRNAYLPQELLGK 1351
W GGAIV +SQTGSLFKPR AYLPQELLGK
Sbjct: 260 WHGGAIVSALSQTGSLFKPRKAYLPQELLGK 290
Score = 95.1 bits (235), Expect(2) = e-170
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3
Query: 1332 PRSCWGKEGFDALDPFIPILVSNYXPKEFESCIQYYLENNWLQHEKAHT 1478
P+ GKEGFDALDPFIPILVSNY PKEFESCIQYYLENNWLQHEKA T
Sbjct: 284 PQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPT 332
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,061,753
Number of extensions: 1441966
Number of successful extensions: 4860
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4850
Number of HSP's successfully gapped: 11
Length of query: 493
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 386
Effective length of database: 14,770,016
Effective search space: 5701226176
Effective search space used: 5701226176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008450
(1480 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 706 0.0
gb|GL893665.2| Sus scrofa unplaced genomic scaffold ChrUScaf1550 323 2e-85
Sscrofa_Chr02 238 7e-60
>Sscrofa_Chr04
|| Length = 143465943
Score = 706 bits (356), Expect = 0.0
Identities = 356/356 (100%)
Strand = Plus / Plus
Query: 1 ttcccattagctgcagcagcgggggagaaaaggacagacgaaacgggcagaagttgccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103011771 ttcccattagctgcagcagcgggggagaaaaggacagacgaaacgggcagaagttgccgt 103011830
Query: 61 taggattggaattaccccagtggccagtagacacctatgactatttacctcgatggctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103011831 taggattggaattaccccagtggccagtagacacctatgactatttacctcgatggctga 103011890
Query: 121 ggcgccaaggcgacacggctcgctccccccacctcgtcctggccgcggtgagcggctcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103011891 ggcgccaaggcgacacggctcgctccccccacctcgtcctggccgcggtgagcggctcgg 103011950
Query: 181 gggcggcctagcgcccctctgctgacaagtagttggaggccgcggcggctgcgcggtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103011951 gggcggcctagcgcccctctgctgacaagtagttggaggccgcggcggctgcgcggtgag 103012010
Query: 241 cagcttcctgccaaacgacccgagcttgcttctctgctgcgggacaagcgctgtggagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103012011 cagcttcctgccaaacgacccgagcttgcttctctgctgcgggacaagcgctgtggagcc 103012070
Query: 301 agcccttgactgtgcctgtcgttcaccgcatcaggaaagcggatccacgactctcg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103012071 agcccttgactgtgcctgtcgttcaccgcatcaggaaagcggatccacgactctcg 103012126
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1039 acagggcataatgcgagtgaggaatgccacagatgcagttggaattgtgctcaaagagct 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103042140 acagggcataatgcgagtgaggaatgccacagatgcagttggaattgtgctcaaagagct 103042199
Query: 1099 taaaaggcaaagttctttgggtatttttcacctcctggtggcagtggatggggtcaatgc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103042200 taaaaggcaaagttctttgggtatttttcacctcctggtggcagtggatggggtcaatgc 103042259
Query: 1159 tctctggggaaggaccacgctgaagagagaagataaaagccca 1201
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103042260 tctctggggaaggaccacgctgaagagagaagataaaagccca 103042302
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 830 gctcatatttgggtcaaaaactgccgggatctactgcagtccaactacaacaaacagcgc 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103041269 gctcatatttgggtcaaaaactgccgggatctactgcagtccaactacaacaaacagcgc 103041328
Query: 890 tttgatcaacctttagaggcttcaacctggctgaagaatttcaaaactgcaaatgaacat 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103041329 tttgatcaacctttagaggcttcaacctggctgaagaatttcaaaactgcaaatgaacat 103041388
Query: 950 ttcttgagtcag 961
||||||||||||
Sbjct: 103041389 ttcttgagtcag 103041400
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 402 agttggaccctggacatgttttgtatatggggacccaggcaccccaaagccttgctgctc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103035833 agttggaccctggacatgttttgtatatggggacccaggcaccccaaagccttgctgctc 103035892
Query: 462 atctggataaccaggttccagttaagagtcccagagctatttctcgcaccagtgaggatg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103035893 atctggataaccaggttccagttaagagtcccagagctatttctcgcaccagtgaggatg 103035952
Query: 522 atccgg 527
||||||
Sbjct: 103035953 atccgg 103035958
Score = 224 bits (113), Expect = 1e-55
Identities = 118/120 (98%)
Strand = Plus / Plus
Query: 1351 aggaaggatttgacgctctggatccctttattcccatcctggtttctaactacnacccaa 1410
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 103045878 aggaaggatttgacgctctggatccctttattcccatcctggtttccaactacaacccaa 103045937
Query: 1411 aggaatttgaaagttgtattcagtattatttggagaataactggcttcaacatgaaaaag 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103045938 aggaatttgaaagttgtattcagtattatttggagaataactggcttcaacatgaaaaag 103045997
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 627 aggtgaagacattcaatgaagcttgcctgatggtaagaaaaccagccctagagcttctgc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103039986 aggtgaagacattcaatgaagcttgcctgatggtaagaaaaccagccctagagcttctgc 103040045
Query: 687 actacctaaaaaacaccaattttgctcatccagctgtacgatatgttctct 737
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103040046 actacctaaaaaacaccaattttgctcatccagctgtacgatatgttctct 103040096
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 526 ggccaagcatagggagcagcacgagggtcagcactacaacatatccctccaggagctgaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103037368 ggccaagcatagggagcagcacgagggtcagcactacaacatatccctccaggagctgaa 103037427
Query: 586 gactgtcttcccccatggcctgcctcctcgctttgcaatgcaggtg 631
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103037428 gactgtcttcccccatggcctgcctcctcgctttgcaatgcaggtg 103037473
Score = 184 bits (93), Expect = 9e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 738 atggtgagaagggaacaggaaaaactctcagtctttgccatattcttcatttctgtgcaa 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103040230 atggtgagaagggaacaggaaaaactctcagtctttgccatattcttcatttctgtgcaa 103040289
Query: 798 aacagaactggctgatactgcatattccagatg 830
|||||||||||||||||||||||||||||||||
Sbjct: 103040290 aacagaactggctgatactgcatattccagatg 103040322
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1261 gcaaggaggtgccattgtgttgactgtgagccagactggttctctctttaagccacggaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103043716 gcaaggaggtgccattgtgttgactgtgagccagactggttctctctttaagccacggaa 103043775
Query: 1321 tgcttatctgccccaggagttgctggg 1347
|||||||||||||||||||||||||||
Sbjct: 103043776 tgcttatctgccccaggagttgctggg 103043802
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 960 agataaaagttcaagagaagtacgtctggaataagcgagaaagcactgagaagggccgtc 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103041975 agataaaagttcaagagaagtacgtctggaataagcgagaaagcactgagaagggccgtc 103042034
Query: 1020 ctctgggagaagtagtggaacagg 1043
||||||||||||||||||||||||
Sbjct: 103042035 ctctgggagaagtagtggaacagg 103042058
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1202 attgccccagaagagctagcgcttattcacaacctgaggaaaatggtgaaaaatgactgg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103043158 attgccccagaagagctagcgcttattcacaacctgaggaaaatggtgaaaaatgactgg 103043217
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 356 gaggtaatgctgaaaggagtaacaaggctcatctccagggtccataag 403
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103031529 gaggtaatgctgaaaggagtaacaaggctcatctccagggtccataag 103031576
>gb|GL893665.2| Sus scrofa unplaced genomic scaffold ChrUScaf1550
Length = 55544
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1039 acagggcataatgcgagtgaggaatgccacagatgcagttggaattgtgctcaaagagct 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19081 acagggcataatgcgagtgaggaatgccacagatgcagttggaattgtgctcaaagagct 19140
Query: 1099 taaaaggcaaagttctttgggtatttttcacctcctggtggcagtggatggggtcaatgc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19141 taaaaggcaaagttctttgggtatttttcacctcctggtggcagtggatggggtcaatgc 19200
Query: 1159 tctctggggaaggaccacgctgaagagagaagataaaagccca 1201
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19201 tctctggggaaggaccacgctgaagagagaagataaaagccca 19243
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 830 gctcatatttgggtcaaaaactgccgggatctactgcagtccaactacaacaaacagcgc 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18401 gctcatatttgggtcaaaaactgccgggatctactgcagtccaactacaacaaacagcgc 18460
Query: 890 tttgatcaacctttagaggcttcaacctggctgaagaatttcaaaactgcaaatgaacat 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18461 tttgatcaacctttagaggcttcaacctggctgaagaatttcaaaactgcaaatgaacat 18520
Query: 950 ttcttgagtcag 961
||||||||||||
Sbjct: 18521 ttcttgagtcag 18532
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 402 agttggaccctggacatgttttgtatatggggacccaggcaccccaaagccttgctgctc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12679 agttggaccctggacatgttttgtatatggggacccaggcaccccaaagccttgctgctc 12738
Query: 462 atctggataaccaggttccagttaagagtcccagagctatttctcgcaccagtgaggatg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12739 atctggataaccaggttccagttaagagtcccagagctatttctcgcaccagtgaggatg 12798
Query: 522 atccgg 527
||||||
Sbjct: 12799 atccgg 12804
Score = 224 bits (113), Expect = 1e-55
Identities = 118/120 (98%)
Strand = Plus / Plus
Query: 1351 aggaaggatttgacgctctggatccctttattcccatcctggtttctaactacnacccaa 1410
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 22819 aggaaggatttgacgctctggatccctttattcccatcctggtttccaactacaacccaa 22878
Query: 1411 aggaatttgaaagttgtattcagtattatttggagaataactggcttcaacatgaaaaag 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22879 aggaatttgaaagttgtattcagtattatttggagaataactggcttcaacatgaaaaag 22938
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 627 aggtgaagacattcaatgaagcttgcctgatggtaagaaaaccagccctagagcttctgc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17132 aggtgaagacattcaatgaagcttgcctgatggtaagaaaaccagccctagagcttctgc 17191
Query: 687 actacctaaaaaacaccaattttgctcatccagctgtacgatatgttctct 737
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17192 actacctaaaaaacaccaattttgctcatccagctgtacgatatgttctct 17242
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 526 ggccaagcatagggagcagcacgagggtcagcactacaacatatccctccaggagctgaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14214 ggccaagcatagggagcagcacgagggtcagcactacaacatatccctccaggagctgaa 14273
Query: 586 gactgtcttcccccatggcctgcctcctcgctttgcaatgcaggtg 631
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14274 gactgtcttcccccatggcctgcctcctcgctttgcaatgcaggtg 14319
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 738 atggtgagaagggaacaggaaaaactctcagtctttgccatattcttcatttctgtgcaa 797
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17376 atggtgagaagggaacgggaaaaactctcagtctttgccatattcttcatttctgtgcaa 17435
Query: 798 aacagaactggctgatactgcatattccagatg 830
|||||||||||||||||||||||||||||||||
Sbjct: 17436 aacagaactggctgatactgcatattccagatg 17468
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1261 gcaaggaggtgccattgtgttgactgtgagccagactggttctctctttaagccacggaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20657 gcaaggaggtgccattgtgttgactgtgagccagactggttctctctttaagccacggaa 20716
Query: 1321 tgcttatctgccccaggagttgctggg 1347
|||||||||||||||||||||||||||
Sbjct: 20717 tgcttatctgccccaggagttgctggg 20743
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 960 agataaaagttcaagagaagtacgtctggaataagcgagaaagcactgagaagggccgtc 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18916 agataaaagttcaagagaagtacgtctggaataagcgagaaagcactgagaagggccgtc 18975
Query: 1020 ctctgggagaagtagtggaacagg 1043
||||||||||||||||||||||||
Sbjct: 18976 ctctgggagaagtagtggaacagg 18999
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1202 attgccccagaagagctagcgcttattcacaacctgaggaaaatggtgaaaaatgactgg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20099 attgccccagaagagctagcgcttattcacaacctgaggaaaatggtgaaaaatgactgg 20158
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 356 gaggtaatgctgaaaggagtaacaaggctcatctccagggtccataag 403
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8239 gaggtaatgctgaaaggagtaacaaggctcatctccagggtccataag 8286
>Sscrofa_Chr02
|| Length = 162569375
Score = 238 bits (120), Expect = 7e-60
Identities = 129/132 (97%)
Strand = Plus / Minus
Query: 830 gctcatatttgggtcaaaaactgccgggatctactgcagtccaactacaacaaacagcgc 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12362686 gctcatatttgggtcaaaaactgccgggatctactgcagtccaactacaacaaacagcgc 12362627
Query: 890 tttgatcaacctttagaggcttcaacctggctgaagaatttcaaaactgcaaatgaacat 949
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 12362626 tttgatcaacctttagaggcttcaacctggctgaagaatttcgaaattgcaaatgaacat 12362567
Query: 950 ttcttgagtcag 961
||| ||||||||
Sbjct: 12362566 ttcctgagtcag 12362555
Score = 85.7 bits (43), Expect = 6e-14
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 960 agataaaagttcaagagaagtacgtctggaataagcgagaaagcactgaga 1010
||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 12362010 agataaaagttcaagagaagtacatctggaataagtgagaaagcactgaga 12361960
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,445,500
Number of extensions: 304
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 25
Length of query: 1480
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1459
Effective length of database: 2,808,413,156
Effective search space: 4097474794604
Effective search space used: 4097474794604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)