Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008457
(1174 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029546.1| microtubule-associated protein RP/EB family ... 88 2e-17
>ref|NP_001029546.1| microtubule-associated protein RP/EB family member 2 [Bos taurus].
Length = 326
Score = 87.8 bits (216), Expect = 2e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = +2
Query: 167 MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYR*WG 295
MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSY WG
Sbjct: 1 MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYS-WG 42
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,926,550
Number of extensions: 1399909
Number of successful extensions: 4988
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4980
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008457
(1174 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547609.2| PREDICTED: similar to Microtubule-associated pr... 124 2e-28
>ref|XP_547609.2| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 2 (APC-binding protein EB2) (End-binding protein
2) (EB2) [Canis familiaris].
Length = 500
Score = 124 bits (311), Expect = 2e-28
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +2
Query: 104 TQPPSSPASPRRFVPILGSAPMPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSY 283
T+PPSSPASP RFVP LGSAPMPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSY
Sbjct: 154 TRPPSSPASPPRFVPFLGSAPMPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSY 213
Query: 284 R*WG 295
WG
Sbjct: 214 S-WG 216
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,857,634
Number of extensions: 1417045
Number of successful extensions: 4964
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4956
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008457
(1174 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127947.2| PREDICTED: microtubule-associated protein RP... 88 1e-17
>ref|XP_003127947.2| PREDICTED: microtubule-associated protein RP/EB family member
2-like [Sus scrofa].
Length = 429
Score = 87.8 bits (216), Expect = 1e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = +2
Query: 167 MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYR*WG 295
MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSY WG
Sbjct: 1 MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYS-WG 42
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,193,341
Number of extensions: 943434
Number of successful extensions: 3210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3197
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008457
(1174 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694698.3| microtubule-associated protein RP/EB family mem... 88 1e-17
>ref|NP_694698.3| microtubule-associated protein RP/EB family member 2 isoform 1 [Mus
musculus].
Length = 326
Score = 87.8 bits (216), Expect = 1e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = +2
Query: 167 MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYR*WG 295
MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSY WG
Sbjct: 1 MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYS-WG 42
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,439,753
Number of extensions: 1168259
Number of successful extensions: 3966
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3949
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008457
(1174 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055083.1| microtubule-associated protein RP/EB family mem... 83 4e-16
>ref|NP_055083.1| microtubule-associated protein RP/EB family member 2 isoform 1
[Homo sapiens].
Length = 327
Score = 83.2 bits (204), Expect = 4e-16
Identities = 41/44 (93%), Positives = 41/44 (93%), Gaps = 1/44 (2%)
Frame = +2
Query: 167 MPGPTQTLSPNGENNNDIIQD-NGTIIPFRKHTVRGERSYR*WG 295
MPGPTQTLSPNGENNNDIIQD NGTIIPFRKHTVRGERSY WG
Sbjct: 1 MPGPTQTLSPNGENNNDIIQDNNGTIIPFRKHTVRGERSYS-WG 43
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,863,109
Number of extensions: 1388767
Number of successful extensions: 4904
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4889
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008457
(1174 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1600 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1600 bits (807), Expect = 0.0
Identities = 829/835 (99%), Gaps = 1/835 (0%)
Strand = Plus / Plus
Query: 341 aaatccgcccgttatataatggagcagacgctgcccccagaccgggctgcagacgtgcgt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132756 aaatccgcccgttatataatggagcagacgctgcccccagaccgggctgcagacgtgcgt 111132815
Query: 401 ttgtaaaggcggtagtgattatttgctatctgtttccatgtgtcatgttgggtgtgcacg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132816 ttgtaaaggcggtagtgattatttgctatctgtttccatgtgtcatgttgggtgtgcacg 111132875
Query: 461 gaggcttcccgattgcagatggaaagcatttcatgaataggtttgccgcctgcaaggggt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132876 gaggcttcccgattgcagatggaaagcatttcatgaataggtttgccgcctgcaaggggt 111132935
Query: 521 ctccctccatcgctttccttccacattgatgaaaaatgcaagcagttttccccctttctc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132936 ctccctccatcgctttccttccacattgatgaaaaatgcaagcagttttccccctttctc 111132995
Query: 581 caaagggagatagcctggagcacttcctttcctccttcctttttagattttaaaggaacc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132996 caaagggagatagcctggagcacttcctttcctccttcctttttagattttaaaggaacc 111133055
Query: 641 atgaggtaggctgtgcctgaagacagggaaccaggaggatggcgaggaaaaggtttgctc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111133056 atgaggtaggctgtgcctgaagacagggaaccaggaggatggcgaggaaaaggtttgctc 111133115
Query: 701 ttgccctggtgtgtgtatgcaggaaagatggaatcctctagattaagctgcagtctgtga 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111133116 ttgccctggtgtgtgtatgcaggaaagatggaatcctctagattaagctgcagtctgtga 111133175
Query: 761 tgttgaaccgccagattgatggagctttgtaagaattctgctcgctgattggtgcaagga 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111133176 tgttgaaccgccagattgatggagctttgtaagaattctgctcgctgattggtgcaagga 111133235
Query: 821 ttgacagcagaggtcacggtgtcagacattgaccaaaattttcttcatagaaccccaggt 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111133236 ttgacagcagaggtcacggtgtcagacattgaccaaaattttcttcatagaaccccaggt 111133295
Query: 881 ttattagaaagagactggactgcaatggacctgaaaagaactggttgctgttaagcattt 940
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 111133296 ttattagaaagagactggactgcaatggacctgaaaagaactggatgctgttaagcattt 111133355
Query: 941 tcttaggagtttatggcctctgcatgggtgggggcgcccgcccttcttatttacagtagg 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111133356 tcttaggagtttatggcctctgcatgggtgggggcgcccgcccttcttatttacagtagg 111133415
Query: 1001 aaggtgattcctggtattttgctgaagtctgatttgaggatgggactcatcttggtcatt 1060
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 111133416 aaggtgattcctggtattttgctgaggtctgatttgaggatgggactcatcttggtcatt 111133475
Query: 1061 gtattgtgagccctttgattaatgatcagcctgtatgttggcatcatttttacattagca 1120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111133476 gtattgtgagccttttgattaatgatcagcctgtatgttggcatcatttttacattagca 111133535
Query: 1121 tatctgggcatatgttctagcagataagctcattaaaattg-ttgcattgtttga 1174
||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 111133536 tatctggcaatatgttctagcagataagctcattaaaattgtttgcattgtttga 111133590
Score = 599 bits (302), Expect = e-168
Identities = 302/302 (100%)
Strand = Plus / Plus
Query: 4 gagagggcggggcgggagccgagcggggagaagggagccgcgagcagcacgcaggcggca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132419 gagagggcggggcgggagccgagcggggagaagggagccgcgagcagcacgcaggcggca 111132478
Query: 64 ggcacggtctgcgcgaggagcaggcgagcgggaaggcgagacgcagccaccttcctcacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132479 ggcacggtctgcgcgaggagcaggcgagcgggaaggcgagacgcagccaccttcctcacc 111132538
Query: 124 agccagcccacggaggtttgttcccatcctcgggagtgcgccaatgcccgggccgaccca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132539 agccagcccacggaggtttgttcccatcctcgggagtgcgccaatgcccgggccgaccca 111132598
Query: 184 aaccctgtccccaaatggcgagaacaacaacgacatcatccaggataacgggaccatcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132599 aaccctgtccccaaatggcgagaacaacaacgacatcatccaggataacgggaccatcat 111132658
Query: 244 ccctttccggaagcacacagtgcgcggggagcgttcctacaggtaatggggctggcacgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111132659 ccctttccggaagcacacagtgcgcggggagcgttcctacaggtaatggggctggcacgg 111132718
Query: 304 ga 305
||
Sbjct: 111132719 ga 111132720
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,711,595
Number of extensions: 365
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 2
Length of query: 1174
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1153
Effective length of database: 2,808,413,156
Effective search space: 3238100368868
Effective search space used: 3238100368868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)