Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008463
(917 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029462.1| vesicle-associated membrane protein 8 [Bos t... 149 3e-36
Alignment gi|NP_001069098.2| vesicle-associated membrane protein 1 [Bos t... 61 1e-09
Alignment gi|NP_001039380.1| vesicle-associated membrane protein 3 [Bos t... 59 6e-09
Alignment gi|NP_001069906.1| vesicle-associated membrane protein 4 [Bos t... 58 1e-08
Alignment gi|NP_776908.1| vesicle-associated membrane protein 2 [Bos taur... 57 2e-08
Alignment gi|NP_001069770.1| vesicle-associated membrane protein 7 [Bos t... 56 4e-08
>ref|NP_001029462.1| vesicle-associated membrane protein 8 [Bos taurus].
Length = 100
Score = 149 bits (376), Expect = 3e-36
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = +1
Query: 283 EASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 462
EASGGGGDDRVRNLR EVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS
Sbjct: 2 EASGGGGDDRVRNLRDEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 61
Query: 463 QKVARKFWWKNVK 501
QKVARKFWWKNVK
Sbjct: 62 QKVARKFWWKNVK 74
>ref|NP_001069098.2| vesicle-associated membrane protein 1 [Bos taurus].
Length = 118
Score = 61.2 bits (147), Expect = 1e-09
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +IM NV+++L R +
Sbjct: 2 SAPAQPPTEGAEGAAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|NP_001039380.1| vesicle-associated membrane protein 3 [Bos taurus].
Length = 104
Score = 58.9 bits (141), Expect = 6e-09
Identities = 24/72 (33%), Positives = 47/72 (65%)
Frame = +1
Query: 286 ASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQ 465
++ G R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++
Sbjct: 10 SAAAGSSRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 69
Query: 466 KVARKFWWKNVK 501
K+ RK+WWKN K
Sbjct: 70 KLKRKYWWKNCK 81
>ref|NP_001069906.1| vesicle-associated membrane protein 4 [Bos taurus].
Length = 141
Score = 58.2 bits (139), Expect = 1e-08
Identities = 21/69 (30%), Positives = 47/69 (68%)
Frame = +1
Query: 295 GGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 474
G +D++++++++V+ V ++M +N+ +++ RGE LD L++K+E L + F S+++
Sbjct: 47 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
Query: 475 RKFWWKNVK 501
R+ WW+ K
Sbjct: 107 RQMWWRGCK 115
>ref|NP_776908.1| vesicle-associated membrane protein 2 [Bos taurus].
Length = 116
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/64 (35%), Positives = 45/64 (70%)
Frame = +1
Query: 310 RVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWW 489
R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 490 KNVK 501
KN+K
Sbjct: 91 KNLK 94
>ref|NP_001069770.1| vesicle-associated membrane protein 7 [Bos taurus].
Length = 220
Score = 56.2 bits (134), Expect = 4e-08
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
++ S G D+V +++V+ +K IM +N++ + RGE L+ L +KTE+L +S FKT
Sbjct: 114 LKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKT 173
Query: 457 TSQKVARKFWWKNVK 501
TS+ +AR KN+K
Sbjct: 174 TSRNLARAMCMKNLK 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,497,495
Number of extensions: 1025558
Number of successful extensions: 5111
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5087
Number of HSP's successfully gapped: 6
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008463
(917 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852312.1| PREDICTED: similar to vesicle-associated membra... 147 1e-35
Alignment gi|XP_865468.1| PREDICTED: similar to vesicle-associated membra... 104 1e-22
Alignment gi|XP_543853.2| PREDICTED: similar to Vesicle-associated membra... 60 4e-09
Alignment gi|XP_536630.2| PREDICTED: similar to Vesicle-associated membra... 59 5e-09
Alignment gi|XP_537195.1| PREDICTED: similar to Vesicle-associated membra... 58 1e-08
Alignment gi|XP_855489.1| PREDICTED: similar to Synaptobrevin-like protei... 56 5e-08
>ref|XP_852312.1| PREDICTED: similar to vesicle-associated membrane protein 8 isoform
2 [Canis familiaris].
Length = 101
Score = 147 bits (372), Expect = 1e-35
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
MEEASGG G+DRVRNL+SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT
Sbjct: 1 MEEASGGVGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 60
Query: 457 TSQKVARKFWWKNVK 501
TSQKVARKFWWKNVK
Sbjct: 61 TSQKVARKFWWKNVK 75
>ref|XP_865468.1| PREDICTED: similar to vesicle-associated membrane protein 8 isoform
3 [Canis familiaris].
Length = 75
Score = 104 bits (259), Expect = 1e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 355 MTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
MTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK
Sbjct: 1 MTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 49
>ref|XP_543853.2| PREDICTED: similar to Vesicle-associated membrane protein 1
(VAMP-1) (Synaptobrevin 1) [Canis familiaris].
Length = 126
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +IM NV+++L R E
Sbjct: 10 SAPAQPPTEGAEGTAPGGGPPGPPPNTTSNRRLQQTQAQVEEVVDIMRVNVDKVLKRDEI 69
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+ + F++++ K+ RK+WWKN K
Sbjct: 70 LSQLDDRADALQVGASQFESSAAKLKRKYWWKNCK 104
>ref|XP_536630.2| PREDICTED: similar to Vesicle-associated membrane protein 2
(VAMP-2) (Synaptobrevin 2) [Canis familiaris].
Length = 203
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Frame = +1
Query: 214 PPGRKPT*ASSAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQN 366
PP +P A + +A A GG + R++ +++V+ V +IM N
Sbjct: 77 PPPSRPPAAPAMSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVN 136
Query: 367 VERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
V+++L R + L L ++ + L+A + F+T++ K+ RK+WWKN+K
Sbjct: 137 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLK 181
>ref|XP_537195.1| PREDICTED: similar to Vesicle-associated membrane protein 4
(VAMP-4) [Canis familiaris].
Length = 141
Score = 57.8 bits (138), Expect = 1e-08
Identities = 21/69 (30%), Positives = 46/69 (66%)
Frame = +1
Query: 295 GGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 474
G D++++++++V+ V ++M +N+ +++ RGE LD L++K+E L + F S+++
Sbjct: 47 GPRSDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
Query: 475 RKFWWKNVK 501
R+ WW+ K
Sbjct: 107 RQMWWRGCK 115
>ref|XP_855489.1| PREDICTED: similar to Synaptobrevin-like protein 1 [Canis
familiaris].
Length = 331
Score = 55.8 bits (133), Expect = 5e-08
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
++ S G D+V +++V+ +K IM +N++ + RGE L+ L +KTE+L +S FKT
Sbjct: 225 LKHHSENKGIDKVVETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKT 284
Query: 457 TSQKVARKFWWKNVK 501
TS+ +AR KN+K
Sbjct: 285 TSRNLARAMCMKNLK 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,569,727
Number of extensions: 986647
Number of successful extensions: 5303
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5270
Number of HSP's successfully gapped: 6
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008463
(917 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354791.1| PREDICTED: vesicle-associated membrane prote... 154 5e-38
Alignment gi|XP_003126593.1| PREDICTED: vesicle-associated membrane prote... 60 2e-09
Alignment gi|XP_003362002.1| PREDICTED: hypothetical protein LOC100628225... 59 3e-09
Alignment gi|XP_003357579.1| PREDICTED: vesicle-associated membrane prote... 58 6e-09
Alignment gi|XP_003358329.1| PREDICTED: vesicle-associated membrane prote... 57 1e-08
Alignment gi|NP_001230522.1| vesicle-associated membrane protein 7 [Sus s... 56 2e-08
>ref|XP_003354791.1| PREDICTED: vesicle-associated membrane protein 8-like [Sus scrofa].
Length = 100
Score = 154 bits (390), Expect = 5e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT
Sbjct: 1 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 60
Query: 457 TSQKVARKFWWKNVK 501
TSQKVARKFWWKNVK
Sbjct: 61 TSQKVARKFWWKNVK 75
>ref|XP_003126593.1| PREDICTED: vesicle-associated membrane protein 1-like [Sus scrofa].
Length = 118
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +I+ NV+++L R +
Sbjct: 2 SAPAQPPTEGAEGAAPGGGPPGPPPNTTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|XP_003362002.1| PREDICTED: hypothetical protein LOC100628225, partial [Sus scrofa].
Length = 210
Score = 59.3 bits (142), Expect = 3e-09
Identities = 24/72 (33%), Positives = 48/72 (66%)
Frame = +1
Query: 286 ASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQ 465
++ G + R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++
Sbjct: 116 SAAAGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 175
Query: 466 KVARKFWWKNVK 501
K+ RK+WWKN K
Sbjct: 176 KLKRKYWWKNCK 187
>ref|XP_003357579.1| PREDICTED: vesicle-associated membrane protein 4-like isoform 2
[Sus scrofa].
Length = 141
Score = 58.2 bits (139), Expect = 6e-09
Identities = 21/69 (30%), Positives = 47/69 (68%)
Frame = +1
Query: 295 GGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 474
G +D++++++++V+ V ++M +N+ +++ RGE LD L++K+E L + F S+++
Sbjct: 47 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
Query: 475 RKFWWKNVK 501
R+ WW+ K
Sbjct: 107 RQMWWRGCK 115
>ref|XP_003358329.1| PREDICTED: vesicle-associated membrane protein 2-like [Sus scrofa].
Length = 116
Score = 57.4 bits (137), Expect = 1e-08
Identities = 23/64 (35%), Positives = 45/64 (70%)
Frame = +1
Query: 310 RVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWW 489
R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 490 KNVK 501
KN+K
Sbjct: 91 KNLK 94
>ref|NP_001230522.1| vesicle-associated membrane protein 7 [Sus scrofa].
Length = 220
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
++ S G D+V +++V+ +K IM +N++ + RGE L+ L +KTE+L +S FKT
Sbjct: 114 LKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKT 173
Query: 457 TSQKVARKFWWKNVK 501
TS+ +AR KN+K
Sbjct: 174 TSRNLARAMCMKNLK 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,082,009
Number of extensions: 784674
Number of successful extensions: 3364
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3355
Number of HSP's successfully gapped: 6
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008463
(917 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058074.2| vesicle-associated membrane protein 8 [Mus musc... 146 2e-35
Alignment gi|NP_001074026.1| vesicle-associated membrane protein 1 isofor... 62 8e-10
Alignment gi|NP_033522.1| vesicle-associated membrane protein 1 isoform a... 62 8e-10
Alignment gi|NP_033524.1| vesicle-associated membrane protein 3 [Mus musc... 59 7e-09
Alignment gi|NP_058076.2| vesicle-associated membrane protein 4 [Mus musc... 58 9e-09
Alignment gi|NP_033523.1| vesicle-associated membrane protein 2 [Mus musc... 57 2e-08
Alignment gi|NP_035645.1| vesicle-associated membrane protein 7 [Mus musc... 56 4e-08
>ref|NP_058074.2| vesicle-associated membrane protein 8 [Mus musculus].
Length = 101
Score = 146 bits (369), Expect = 2e-35
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
MEEASG G+DRVRNL+SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT
Sbjct: 1 MEEASGSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 60
Query: 457 TSQKVARKFWWKNVK 501
TSQKVARKFWWKNVK
Sbjct: 61 TSQKVARKFWWKNVK 75
>ref|NP_001074026.1| vesicle-associated membrane protein 1 isoform b [Mus musculus].
Length = 117
Score = 61.6 bits (148), Expect = 8e-10
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +IM NV+++L R +
Sbjct: 2 SAPAQPPAEGTEGAAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|NP_033522.1| vesicle-associated membrane protein 1 isoform a [Mus musculus].
Length = 118
Score = 61.6 bits (148), Expect = 8e-10
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +IM NV+++L R +
Sbjct: 2 SAPAQPPAEGTEGAAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|NP_033524.1| vesicle-associated membrane protein 3 [Mus musculus].
Length = 103
Score = 58.5 bits (140), Expect = 7e-09
Identities = 24/68 (35%), Positives = 46/68 (67%)
Frame = +1
Query: 298 GGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 477
G + R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ R
Sbjct: 14 GSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 73
Query: 478 KFWWKNVK 501
K+WWKN K
Sbjct: 74 KYWWKNCK 81
>ref|NP_058076.2| vesicle-associated membrane protein 4 [Mus musculus].
Length = 141
Score = 58.2 bits (139), Expect = 9e-09
Identities = 21/69 (30%), Positives = 47/69 (68%)
Frame = +1
Query: 295 GGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 474
G +D++++++++V+ V ++M +N+ +++ RGE LD L++K+E L + F S+++
Sbjct: 47 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
Query: 475 RKFWWKNVK 501
R+ WW+ K
Sbjct: 107 RQMWWRGCK 115
>ref|NP_033523.1| vesicle-associated membrane protein 2 [Mus musculus].
Length = 116
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/64 (35%), Positives = 45/64 (70%)
Frame = +1
Query: 310 RVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWW 489
R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 490 KNVK 501
KN+K
Sbjct: 91 KNLK 94
>ref|NP_035645.1| vesicle-associated membrane protein 7 [Mus musculus].
Length = 220
Score = 55.8 bits (133), Expect = 4e-08
Identities = 27/65 (41%), Positives = 44/65 (67%)
Frame = +1
Query: 307 DRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFW 486
D+V +++V+ +K IM +N++ + RGE L+ L +KTE+L +S FKTTS+ +AR
Sbjct: 124 DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMC 183
Query: 487 WKNVK 501
KN+K
Sbjct: 184 MKNIK 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,020,556
Number of extensions: 771651
Number of successful extensions: 3860
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3837
Number of HSP's successfully gapped: 7
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008463
(917 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003752.2| vesicle-associated membrane protein 8 [Homo sap... 146 2e-35
Alignment gi|NP_954740.1| vesicle-associated membrane protein 1 isoform 2... 60 3e-09
Alignment gi|NP_055046.1| vesicle-associated membrane protein 1 isoform 1... 60 3e-09
Alignment gi|NP_058439.1| vesicle-associated membrane protein 1 isoform 3... 60 3e-09
Alignment gi|NP_004772.1| vesicle-associated membrane protein 3 [Homo sap... 59 8e-09
Alignment gi|NP_001172056.1| vesicle-associated membrane protein 4 isofor... 58 1e-08
Alignment gi|NP_003753.2| vesicle-associated membrane protein 4 isoform 1... 58 1e-08
Alignment gi|NP_055047.2| vesicle-associated membrane protein 2 [Homo sap... 57 2e-08
Alignment gi|NP_005629.1| vesicle-associated membrane protein 7 isoform 1... 56 4e-08
Alignment gi|NP_001138621.1| vesicle-associated membrane protein 7 isofor... 56 4e-08
>ref|NP_003752.2| vesicle-associated membrane protein 8 [Homo sapiens].
Length = 100
Score = 146 bits (369), Expect = 2e-35
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
MEEAS GGG+DRVRNL+SEVEGVKNIMTQNVERILARGENL+HLRNKTEDLEATSEHFKT
Sbjct: 1 MEEASEGGGNDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKT 60
Query: 457 TSQKVARKFWWKNVK 501
TSQKVARKFWWKNVK
Sbjct: 61 TSQKVARKFWWKNVK 75
>ref|NP_954740.1| vesicle-associated membrane protein 1 isoform 2 [Homo sapiens].
Length = 117
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +I+ NV+++L R +
Sbjct: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|NP_055046.1| vesicle-associated membrane protein 1 isoform 1 [Homo sapiens].
Length = 118
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +I+ NV+++L R +
Sbjct: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|NP_058439.1| vesicle-associated membrane protein 1 isoform 3 [Homo sapiens].
Length = 116
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Frame = +1
Query: 244 SAAARPQPLGDMEEASGGG---------GDDRVRNLRSEVEGVKNIMTQNVERILARGEN 396
SA A+P G A GGG + R++ +++VE V +I+ NV+++L R +
Sbjct: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 397 LDHLRNKTEDLEATSEHFKTTSQKVARKFWWKNVK 501
L L ++ + L+A + F++++ K+ RK+WWKN K
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCK 96
>ref|NP_004772.1| vesicle-associated membrane protein 3 [Homo sapiens].
Length = 100
Score = 58.5 bits (140), Expect = 8e-09
Identities = 24/68 (35%), Positives = 46/68 (67%)
Frame = +1
Query: 298 GGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 477
G + R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ R
Sbjct: 10 GSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 69
Query: 478 KFWWKNVK 501
K+WWKN K
Sbjct: 70 KYWWKNCK 77
>ref|NP_001172056.1| vesicle-associated membrane protein 4 isoform 2 [Homo sapiens].
Length = 140
Score = 58.2 bits (139), Expect = 1e-08
Identities = 21/69 (30%), Positives = 47/69 (68%)
Frame = +1
Query: 295 GGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 474
G +D++++++++V+ V ++M +N+ +++ RGE LD L++K+E L + F S+++
Sbjct: 46 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 105
Query: 475 RKFWWKNVK 501
R+ WW+ K
Sbjct: 106 RQMWWRGCK 114
>ref|NP_003753.2| vesicle-associated membrane protein 4 isoform 1 [Homo sapiens].
Length = 141
Score = 58.2 bits (139), Expect = 1e-08
Identities = 21/69 (30%), Positives = 47/69 (68%)
Frame = +1
Query: 295 GGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 474
G +D++++++++V+ V ++M +N+ +++ RGE LD L++K+E L + F S+++
Sbjct: 47 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
Query: 475 RKFWWKNVK 501
R+ WW+ K
Sbjct: 107 RQMWWRGCK 115
>ref|NP_055047.2| vesicle-associated membrane protein 2 [Homo sapiens].
Length = 116
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/64 (35%), Positives = 45/64 (70%)
Frame = +1
Query: 310 RVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARKFWW 489
R++ +++V+ V +IM NV+++L R + L L ++ + L+A + F+T++ K+ RK+WW
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 490 KNVK 501
KN+K
Sbjct: 91 KNLK 94
>ref|NP_005629.1| vesicle-associated membrane protein 7 isoform 1 [Homo sapiens].
Length = 220
Score = 56.2 bits (134), Expect = 4e-08
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
++ S G D+V +++V+ +K IM +N++ + RGE L+ L +KTE+L +S FKT
Sbjct: 114 LKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKT 173
Query: 457 TSQKVARKFWWKNVK 501
TS+ +AR KN+K
Sbjct: 174 TSRNLARAMCMKNLK 188
>ref|NP_001138621.1| vesicle-associated membrane protein 7 isoform 2 [Homo sapiens].
Length = 179
Score = 56.2 bits (134), Expect = 4e-08
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 277 MEEASGGGGDDRVRNLRSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 456
++ S G D+V +++V+ +K IM +N++ + RGE L+ L +KTE+L +S FKT
Sbjct: 73 LKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKT 132
Query: 457 TSQKVARKFWWKNVK 501
TS+ +AR KN+K
Sbjct: 133 TSRNLARAMCMKNLK 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,641,150
Number of extensions: 937891
Number of successful extensions: 4806
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4776
Number of HSP's successfully gapped: 10
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008463
(917 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 636 e-180
>Sscrofa_Chr03
|| Length = 144787322
Score = 636 bits (321), Expect = e-180
Identities = 321/321 (100%)
Strand = Plus / Minus
Query: 574 ccttaaaataacttagggaaccccttccaccctgccctcctcttcagggcaaccttccat 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62249338 ccttaaaataacttagggaaccccttccaccctgccctcctcttcagggcaaccttccat 62249279
Query: 634 agtgggtgccgagaggggccctctctcccatgctcctccacaaagaatgctgctcgagcc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62249278 agtgggtgccgagaggggccctctctcccatgctcctccacaaagaatgctgctcgagcc 62249219
Query: 694 tcccgcctctcactctgagacccccgcactgtctgcccccgtgagtaccttggtccctgg 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62249218 tcccgcctctcactctgagacccccgcactgtctgcccccgtgagtaccttggtccctgg 62249159
Query: 754 aaggagagagccagactgtggctgtgtctcagggggcctcagaggtggttggagagacag 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62249158 aaggagagagccagactgtggctgtgtctcagggggcctcagaggtggttggagagacag 62249099
Query: 814 acccagagggcccagcatgtggctgggaagctgatggaactgacggtggccagtgggcaa 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62249098 acccagagggcccagcatgtggctgggaagctgatggaactgacggtggccagtgggcaa 62249039
Query: 874 taaagacctttctgtatccct 894
|||||||||||||||||||||
Sbjct: 62249038 taaagacctttctgtatccct 62249018
Score = 533 bits (269), Expect = e-149
Identities = 272/273 (99%)
Strand = Plus / Minus
Query: 8 ccctggttcctgatacgtgagaagaattgtggtgccagggagccctgtggctttaagcct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62254141 ccctggttcctgatacgtgagaagaattgtggtgccagggagccctgtggctttaagcct 62254082
Query: 68 aagccctggcaggggaggagactgggagggctgtggagggtgcccgcctacctggggaac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62254081 aagccctggcaggggaggagactgggagggctgtggagggtgcccgcctacctggggaac 62254022
Query: 128 ctgcgcgaggtgtggccggagcggctcgggatgcgaggtgggcgggggcgggctgaaagt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62254021 ctgcgcgaggtgtggccggagcggctcgggatgcgaggtgggcgggggcgggctgaaagt 62253962
Query: 188 tggacaagcaggaagtgaaccgacggccgcccgggaggaaaccgacttaggcgagttctg 247
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 62253961 tggacaagcaggaagtgaaccgacggccgcccgggaggaaaccgatttaggcgagttctg 62253902
Query: 248 ctgccgccaggccccagccgctcggagacatgg 280
|||||||||||||||||||||||||||||||||
Sbjct: 62253901 ctgccgccaggccccagccgctcggagacatgg 62253869
Score = 317 bits (160), Expect = 6e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 279 ggaggaggccagtggcggtggaggggatgaccgcgtgcggaacctgcggagtgaagtgga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62251926 ggaggaggccagtggcggtggaggggatgaccgcgtgcggaacctgcggagtgaagtgga 62251867
Query: 339 gggagtcaagaatattatgacccagaatgtggagcggatcctggcccggggagaaaactt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62251866 gggagtcaagaatattatgacccagaatgtggagcggatcctggcccggggagaaaactt 62251807
Query: 399 ggaccatctccgcaacaagacagaggatctggaagccaca 438
||||||||||||||||||||||||||||||||||||||||
Sbjct: 62251806 ggaccatctccgcaacaagacagaggatctggaagccaca 62251767
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 439 tctgagcacttcaagaccacgtcccagaaggtggctcggaagttctggtggaagaacgtg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62249473 tctgagcacttcaagaccacgtcccagaaggtggctcggaagttctggtggaagaacgtg 62249414
Query: 499 aa 500
||
Sbjct: 62249413 aa 62249412
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,386,174
Number of extensions: 170
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 4
Length of query: 917
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 896
Effective length of database: 2,808,413,156
Effective search space: 2516338187776
Effective search space used: 2516338187776
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)