Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008465
(1020 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029713.1| methylmalonic aciduria (cobalamin deficiency... 551 e-157
>ref|NP_001029713.1| methylmalonic aciduria (cobalamin deficiency) cblD type, with
homocystinuria [Bos taurus].
Length = 296
Score = 551 bits (1419), Expect = e-157
Identities = 265/287 (92%), Positives = 271/287 (94%)
Frame = +3
Query: 159 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 338
MANVLCNRARL+SYLPGFCSLVK+VVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE
Sbjct: 1 MANVLCNRARLISYLPGFCSLVKRVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 60
Query: 339 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 518
TMGPFGPQDQRFQLPGNIGFDCHLNGT SQKKSQVH+TLPD+LAEPLSSERHEFVMAQYV
Sbjct: 61 TMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSQVHKTLPDVLAEPLSSERHEFVMAQYV 120
Query: 519 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 698
NEFQ NDAPVEQEINSAETYFESAKVECAIQTCPELLR+DFESLFPEVATNKLMILTVTQ
Sbjct: 121 NEFQGNDAPVEQEINSAETYFESAKVECAIQTCPELLRRDFESLFPEVATNKLMILTVTQ 180
Query: 699 KTKNDMTVWSXXXXXXXXXXXXKFINGAKEICYALRAEGYWADFIDPSSGLAFFGTYTNN 878
KTKNDMTVWS KFI+GAKEICYALRAEGYWADFIDPSSGLAFFG YTNN
Sbjct: 181 KTKNDMTVWSEEVENEREVLLEKFISGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNN 240
Query: 879 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVGVGSIFTNATPDS 1019
TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHV VGSIFTNATPDS
Sbjct: 241 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDS 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,258,742
Number of extensions: 822860
Number of successful extensions: 2145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2145
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008465
(1020 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849074.1| PREDICTED: similar to Protein C2orf25, mitochon... 537 e-153
Alignment gi|XP_533352.2| PREDICTED: similar to Protein C2orf25, mitochon... 369 e-102
>ref|XP_849074.1| PREDICTED: similar to Protein C2orf25, mitochondrial precursor
isoform 2 [Canis familiaris].
Length = 298
Score = 537 bits (1384), Expect = e-153
Identities = 257/287 (89%), Positives = 269/287 (93%)
Frame = +3
Query: 159 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 338
MA VLCNRARLVSY+PGFCSLVK+VV+P+AFSTAGSSGSDESHVATAPPDICSRTVWPDE
Sbjct: 1 MATVLCNRARLVSYVPGFCSLVKRVVSPKAFSTAGSSGSDESHVATAPPDICSRTVWPDE 60
Query: 339 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 518
TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQ+H+TLPD+LAEPLSSERHEFVMAQYV
Sbjct: 61 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQLHKTLPDVLAEPLSSERHEFVMAQYV 120
Query: 519 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 698
NEFQ N+APVEQEI+SAETYFE+AKVECAIQTCPELLR+DFESLFPE ATNKLMILT+TQ
Sbjct: 121 NEFQGNNAPVEQEISSAETYFENAKVECAIQTCPELLRRDFESLFPEGATNKLMILTITQ 180
Query: 699 KTKNDMTVWSXXXXXXXXXXXXKFINGAKEICYALRAEGYWADFIDPSSGLAFFGTYTNN 878
KTKNDMTVWS KFINGAKEICYALRAEGYWADFIDPSSGLAFFG YTNN
Sbjct: 181 KTKNDMTVWSEEVENEREMLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNN 240
Query: 879 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVGVGSIFTNATPDS 1019
TLFETDERYRHLGFSVDDLGCCKVIRH LWGTHV VGSIFTNATPDS
Sbjct: 241 TLFETDERYRHLGFSVDDLGCCKVIRHRLWGTHVVVGSIFTNATPDS 287
>ref|XP_533352.2| PREDICTED: similar to Protein C2orf25, mitochondrial precursor
isoform 1 [Canis familiaris].
Length = 216
Score = 369 bits (947), Expect = e-102
Identities = 175/190 (92%), Positives = 187/190 (98%)
Frame = +3
Query: 159 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 338
MA VLCNRARLVSY+PGFCSLVK+VV+P+AFSTAGSSGSDESHVATAPPDICSRTVWPDE
Sbjct: 1 MATVLCNRARLVSYVPGFCSLVKRVVSPKAFSTAGSSGSDESHVATAPPDICSRTVWPDE 60
Query: 339 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 518
TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQ+H+TLPD+LAEPLSSERHEFVMAQYV
Sbjct: 61 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQLHKTLPDVLAEPLSSERHEFVMAQYV 120
Query: 519 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 698
NEFQ N+APVEQEI+SAETYFE+AKVECAIQTCPELLR+DFESLFPE ATNKLMILT+TQ
Sbjct: 121 NEFQGNNAPVEQEISSAETYFENAKVECAIQTCPELLRRDFESLFPEGATNKLMILTITQ 180
Query: 699 KTKNDMTVWS 728
KTKNDMTVWS
Sbjct: 181 KTKNDMTVWS 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,712,131
Number of extensions: 841358
Number of successful extensions: 2255
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2254
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008465
(1020 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133306.1| PREDICTED: methylmalonic aciduria and homocy... 561 e-160
>ref|XP_003133306.1| PREDICTED: methylmalonic aciduria and homocystinuria type D homolog,
mitochondrial-like [Sus scrofa].
Length = 296
Score = 561 bits (1446), Expect = e-160
Identities = 273/287 (95%), Positives = 273/287 (95%)
Frame = +3
Query: 159 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 338
MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE
Sbjct: 1 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 60
Query: 339 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 518
TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV
Sbjct: 61 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 120
Query: 519 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 698
NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ
Sbjct: 121 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 180
Query: 699 KTKNDMTVWSXXXXXXXXXXXXKFINGAKEICYALRAEGYWADFIDPSSGLAFFGTYTNN 878
KTKNDMTVWS KFINGAKEICYALRAEGYWADFIDPSSGLAFFG YTNN
Sbjct: 181 KTKNDMTVWSEEVENEREMLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNN 240
Query: 879 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVGVGSIFTNATPDS 1019
TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHV VGSIFTNATPDS
Sbjct: 241 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDS 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,971,061
Number of extensions: 523667
Number of successful extensions: 1378
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008465
(1020 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598600.1| methylmalonic aciduria and homocystinuria type ... 535 e-152
>ref|NP_598600.1| methylmalonic aciduria and homocystinuria type D homolog,
mitochondrial precursor [Mus musculus].
Length = 296
Score = 535 bits (1378), Expect = e-152
Identities = 256/287 (89%), Positives = 269/287 (93%)
Frame = +3
Query: 159 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 338
MA+VLCNRARLVSYLPGFCSLVK+V+NPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE
Sbjct: 1 MAHVLCNRARLVSYLPGFCSLVKRVINPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 60
Query: 339 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 518
TMGPFGPQDQRFQLPGNIGFDCHLNGT SQKKSQ H+TLPD+LAEPLS+ERHEFVMAQYV
Sbjct: 61 TMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSQAHKTLPDVLAEPLSTERHEFVMAQYV 120
Query: 519 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 698
NEFQ++DAPVEQEINSAETYFESAKVECAIQTCPELLR+DFESLFPEVA +KLMILTVTQ
Sbjct: 121 NEFQDSDAPVEQEINSAETYFESAKVECAIQTCPELLRRDFESLFPEVANSKLMILTVTQ 180
Query: 699 KTKNDMTVWSXXXXXXXXXXXXKFINGAKEICYALRAEGYWADFIDPSSGLAFFGTYTNN 878
KT+NDMTVWS KFI+GAKEICYALRAEGYWADFIDPSSG+AFFG YTNN
Sbjct: 181 KTENDMTVWSEEVEVEREVLLEKFISGAKEICYALRAEGYWADFIDPSSGVAFFGPYTNN 240
Query: 879 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVGVGSIFTNATPDS 1019
TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHV VGSIFTNAT DS
Sbjct: 241 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATADS 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,167,544
Number of extensions: 721957
Number of successful extensions: 1885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1885
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008465
(1020 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056517.1| methylmalonic aciduria and homocystinuria type ... 543 e-154
>ref|NP_056517.1| methylmalonic aciduria and homocystinuria type D protein,
mitochondrial precursor [Homo sapiens].
Length = 296
Score = 543 bits (1399), Expect = e-154
Identities = 262/287 (91%), Positives = 267/287 (93%)
Frame = +3
Query: 159 MANVLCNRARLVSYLPGFCSLVKKVVNPRAFSTAGSSGSDESHVATAPPDICSRTVWPDE 338
MANVLCNRARLVSYLPGFCSLVK+VVNP+AFSTAGSSGSDESHVA APPDICSRTVWPDE
Sbjct: 1 MANVLCNRARLVSYLPGFCSLVKRVVNPKAFSTAGSSGSDESHVAAAPPDICSRTVWPDE 60
Query: 339 TMGPFGPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFVMAQYV 518
TMGPFGPQDQRFQLPGNIGFDCHLNGT SQKKS VH+TLPD+LAEPLSSERHEFVMAQYV
Sbjct: 61 TMGPFGPQDQRFQLPGNIGFDCHLNGTASQKKSLVHKTLPDVLAEPLSSERHEFVMAQYV 120
Query: 519 NEFQNNDAPVEQEINSAETYFESAKVECAIQTCPELLRKDFESLFPEVATNKLMILTVTQ 698
NEFQ NDAPVEQEINSAETYFESA+VECAIQTCPELLRKDFESLFPEVA KLMILTVTQ
Sbjct: 121 NEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEVANGKLMILTVTQ 180
Query: 699 KTKNDMTVWSXXXXXXXXXXXXKFINGAKEICYALRAEGYWADFIDPSSGLAFFGTYTNN 878
KTKNDMTVWS KFINGAKEICYALRAEGYWADFIDPSSGLAFFG YTNN
Sbjct: 181 KTKNDMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNN 240
Query: 879 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVGVGSIFTNATPDS 1019
TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHV VGSIFTNATPDS
Sbjct: 241 TLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDS 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,225,345
Number of extensions: 840983
Number of successful extensions: 2230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2229
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008465
(1020 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 432 e-118
>Sscrofa_Chr15
|| Length = 157681621
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Plus
Query: 313 gctctcgaacagtatggccggatgaaactatgggaccatttgggcctcaggatcagagat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892251 gctctcgaacagtatggccggatgaaactatgggaccatttgggcctcaggatcagagat 1892310
Query: 373 tccagcttcctggaaacataggttttgattgtcatctcaatgggaccacatcacagaaga 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892311 tccagcttcctggaaacataggttttgattgtcatctcaatgggaccacatcacagaaga 1892370
Query: 433 aaagccaggttcatagaactttacctgatattttagcagaacctttatcaagtgaaagac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892371 aaagccaggttcatagaactttacctgatattttagcagaacctttatcaagtgaaagac 1892430
Query: 493 atgagtttgtaatggcacagtatgtgaatgaatttcag 530
||||||||||||||||||||||||||||||||||||||
Sbjct: 1892431 atgagtttgtaatggcacagtatgtgaatgaatttcag 1892468
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Plus
Query: 313 gctctcgaacagtatggccggatgaaactatgggaccatttgggcctcaggatcagagat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938230 gctctcgaacagtatggccggatgaaactatgggaccatttgggcctcaggatcagagat 1938289
Query: 373 tccagcttcctggaaacataggttttgattgtcatctcaatgggaccacatcacagaaga 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938290 tccagcttcctggaaacataggttttgattgtcatctcaatgggaccacatcacagaaga 1938349
Query: 433 aaagccaggttcatagaactttacctgatattttagcagaacctttatcaagtgaaagac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938350 aaagccaggttcatagaactttacctgatattttagcagaacctttatcaagtgaaagac 1938409
Query: 493 atgagtttgtaatggcacagtatgtgaatgaatttcag 530
||||||||||||||||||||||||||||||||||||||
Sbjct: 1938410 atgagtttgtaatggcacagtatgtgaatgaatttcag 1938447
Score = 305 bits (154), Expect = 3e-80
Identities = 163/166 (98%)
Strand = Plus / Plus
Query: 855 ttttttggaacatatacaaacaacactctttttgagacagatgaacgctatcgacattta 914
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948966 ttttttggaccatatacaaacaacactctttttgagacagatgaacgctatcgacattta 1949025
Query: 915 ggattctccgttgatgatcttggctgctgtaaagtgattcgtcacagtctctggggtacc 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949026 ggattctccgttgatgatcttggctgctgtaaagtgattcgtcacagtctctggggtacc 1949085
Query: 975 cacgtgggtgtaggaagtatcttcactaatgcaacacccgacagcc 1020
||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 1949086 cacgtggttgtaggaagtatcttcactaatgcaacaccggacagcc 1949131
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 168 gtgctctgtaacagagccagattggtttcctatctgccaggattttgctctttagttaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1935308 gtgctctgtaacagagccagattggtttcctatctgccaggattttgctctttagttaaa 1935367
Query: 228 aaggttgtcaatccaagagccttttcaactgcaggatcttcaggttctgatgagtctcat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1935368 aaggttgtcaatccaagagccttttcaactgcaggatcttcaggttctgatgagtctcat 1935427
Query: 288 gtggccactgcacctccagatatatg 313
||||||||||||||||||||||||||
Sbjct: 1935428 gtggccactgcacctccagatatatg 1935453
Score = 256 bits (129), Expect = 2e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 635 agattttgaatcactgtttccagaggtagctaccaacaaactaatgatcctgactgtaac 694
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1942827 agattttgaatcactgtttccagaggtagccaccaacaaactaatgatcctgactgtaac 1942886
Query: 695 acagaaaactaagaatgatatgactgtttggagtgaggaggtagaaaatgaaagagaaat 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942887 acagaaaactaagaatgatatgactgtttggagtgaggaggtagaaaatgaaagagaaat 1942946
Query: 755 gctcttagaaaag 767
|||||||||||||
Sbjct: 1942947 gctcttagaaaag 1942959
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 529 agaataatgatgcacctgttgagcaagaaattaacagtgcagaaacctactttgaaagtg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941929 agaataatgatgcacctgttgagcaagaaattaacagtgcagaaacctactttgaaagtg 1941988
Query: 589 ccaaagtagagtgtgcaatccagacatgtccagaattgctgcgaaaag 636
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941989 ccaaagtagagtgtgcaatccagacatgtccagaattgctgcgaaaag 1942036
Score = 198 bits (100), Expect = 4e-48
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 1 gtctgctcgctgcccccgtacgctcaccccgccgccgtcgcgccgccattttgaagccgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1931289 gtctgctcgctgcccccgtacgctcaccccgccgccgtcgcgccgccattttgaagacgg 1931348
Query: 61 gcagcgtagagcgctgggacagctggaggcggcggcggtggtgactgg 108
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931349 gaagcgtagagcgctgggacagctggaggcggcggcggtggtgactgg 1931396
Score = 168 bits (85), Expect = 4e-39
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 766 agttcatcaacggtgctaaagaaatctgctatgctcttcgagcggaaggctattgggctg 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947373 agttcatcaacggtgctaaagaaatctgctatgctcttcgagcggaaggctattgggctg 1947432
Query: 826 actttattgacccatcatctggtttggca 854
|||||||||| ||||||||||||||||||
Sbjct: 1947433 actttattgatccatcatctggtttggca 1947461
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 107 ggcataactttacgaaaggaaagataatttgcgtctgccctttccgccagaaatggccaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931976 ggcataactttacgaaaggaaagataatttgcgtctgccctttccgccagaaatggccaa 1932035
Query: 167 tgtg 170
||||
Sbjct: 1932036 tgtg 1932039
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,376,878
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 9
Length of query: 1020
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 999
Effective length of database: 2,808,413,156
Effective search space: 2805604742844
Effective search space used: 2805604742844
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)