Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008473
(1938 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039860.2| CDP-diacylglycerol--glycerol-3-phosphate 3-p... 820 0.0
>ref|NP_001039860.2| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase,
mitochondrial precursor [Bos taurus].
Length = 556
Score = 820 bits (2119), Expect = 0.0
Identities = 414/468 (88%), Positives = 427/468 (91%)
Frame = +3
Query: 534 AVPQVPSPPCCLCPEGVHRFQWIRSLVPEFGVSSSHVRVLASPAEFFELMKGQIRAAQRR 713
AVP V SPPCCLC EGVHRFQWIR+LVPEFGVSSSHVRVL+SPAEFFELMKGQI+ A+RR
Sbjct: 61 AVPVVTSPPCCLCAEGVHRFQWIRNLVPEFGVSSSHVRVLSSPAEFFELMKGQIKVAKRR 120
Query: 714 VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL 893
VVMASLYLG GPLEQELVDCLESTLEKSLQAKFPS L+VSILLDFTRGSRGRKNSRTMLL
Sbjct: 121 VVMASLYLGIGPLEQELVDCLESTLEKSLQAKFPSGLRVSILLDFTRGSRGRKNSRTMLL 180
Query: 894 PLLQRFPEQVRVSLFHTPNLRGLFRLLLPERLNETIGLQHIKVYLFDDNVILSGANLSDS 1073
PLLQRFPEQVRVSLFHTPNLRGL RLL+PER NETIGLQHIKVYLFD+NVILSGANLSDS
Sbjct: 181 PLLQRFPEQVRVSLFHTPNLRGLLRLLIPERFNETIGLQHIKVYLFDNNVILSGANLSDS 240
Query: 1074 YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGMVHPYKGDRAAYC 1253
YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQ+VEGMVHPYKGDRAAYC
Sbjct: 241 YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQMVEGMVHPYKGDRAAYC 300
Query: 1254 KAANKRVMDVINSARIRQQMLHAQTFHGDSLWTQEDAAASGDRRPALDTWIYPLIQMKPF 1433
+AANKRVMDVINSAR+RQQMLHAQTFH D L TQEDAAA+GDRRPA DTWIYPLIQMKPF
Sbjct: 301 RAANKRVMDVINSARMRQQMLHAQTFHSDPLLTQEDAAAAGDRRPAPDTWIYPLIQMKPF 360
Query: 1434 AIQIDXXXXXXXXXXAERGARVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 1613
IQID AERGA+VYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG
Sbjct: 361 EIQIDEIVTETLLTEAERGAKVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 420
Query: 1614 AKGVAGAIPAAYVHIERQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPS 1793
AKGVAGAIPAAYVHIERQFYSEV SLGQQERVQLQEYWRR WTFHAKGLWLYLAGSSLP
Sbjct: 421 AKGVAGAIPAAYVHIERQFYSEVCSLGQQERVQLQEYWRRDWTFHAKGLWLYLAGSSLPC 480
Query: 1794 LTLIGSPYFGYRSVHRDLEAQIAIVTESRAXXXXXXXXXXXXXXRSGV 1937
LTLIGSP FGYRSVHRDLEAQIAIVTESRA R+GV
Sbjct: 481 LTLIGSPNFGYRSVHRDLEAQIAIVTESRALQQQLHQEQEQLYRRAGV 528
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,853,307
Number of extensions: 1549373
Number of successful extensions: 8238
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8221
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 537
Effective length of database: 14,074,782
Effective search space: 7558157934
Effective search space used: 7558157934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008473
(1938 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533128.2| PREDICTED: similar to phosphatidylglycerophosph... 837 0.0
>ref|XP_533128.2| PREDICTED: similar to phosphatidylglycerophosphate synthase [Canis
familiaris].
Length = 623
Score = 837 bits (2161), Expect = 0.0
Identities = 420/468 (89%), Positives = 432/468 (92%)
Frame = +3
Query: 534 AVPQVPSPPCCLCPEGVHRFQWIRSLVPEFGVSSSHVRVLASPAEFFELMKGQIRAAQRR 713
AVPQV SPPCCLCPEGVHRFQWIR+LVPEFGVSSSHVRVLASPAEFFELMKGQI+ A+RR
Sbjct: 128 AVPQVTSPPCCLCPEGVHRFQWIRNLVPEFGVSSSHVRVLASPAEFFELMKGQIKVAKRR 187
Query: 714 VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL 893
VVMASLYLGTGPLEQELVDCLE+TLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL
Sbjct: 188 VVMASLYLGTGPLEQELVDCLENTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL 247
Query: 894 PLLQRFPEQVRVSLFHTPNLRGLFRLLLPERLNETIGLQHIKVYLFDDNVILSGANLSDS 1073
PLLQRFPEQVRVSLFHTPNLRGL RLL+PER NETIGLQHIKVYLFD+N+ILSGANLSDS
Sbjct: 248 PLLQRFPEQVRVSLFHTPNLRGLLRLLIPERFNETIGLQHIKVYLFDNNIILSGANLSDS 307
Query: 1074 YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGMVHPYKGDRAAYC 1253
YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGMVHPYKGDRAAYC
Sbjct: 308 YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGMVHPYKGDRAAYC 367
Query: 1254 KAANKRVMDVINSARIRQQMLHAQTFHGDSLWTQEDAAASGDRRPALDTWIYPLIQMKPF 1433
+AANKRVMDVINSAR RQQ+LHAQTFHGDSL TQEDAAA+GDRRPA DTWIYPLIQMKPF
Sbjct: 368 RAANKRVMDVINSARARQQVLHAQTFHGDSLLTQEDAAAAGDRRPAPDTWIYPLIQMKPF 427
Query: 1434 AIQIDXXXXXXXXXXAERGARVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 1613
IQID AERGA++YLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG
Sbjct: 428 EIQIDEIVTETLLTEAERGAKIYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 487
Query: 1614 AKGVAGAIPAAYVHIERQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPS 1793
AKGVAGAIPAAYVHIERQFY EV SLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLP
Sbjct: 488 AKGVAGAIPAAYVHIERQFYREVCSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPC 547
Query: 1794 LTLIGSPYFGYRSVHRDLEAQIAIVTESRAXXXXXXXXXXXXXXRSGV 1937
LTLIGSP FGYRSVHRDLEAQIAIVTESRA RSGV
Sbjct: 548 LTLIGSPNFGYRSVHRDLEAQIAIVTESRALQQQLHQEQEQLYLRSGV 595
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,487,693
Number of extensions: 1592586
Number of successful extensions: 8803
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8771
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 537
Effective length of database: 15,240,880
Effective search space: 8184352560
Effective search space used: 8184352560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008473
(1938 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361991.1| PREDICTED: CDP-diacylglycerol--glycerol-3-ph... 650 0.0
>ref|XP_003361991.1| PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase, mitochondrial-like, partial
[Sus scrofa].
Length = 707
Score = 650 bits (1678), Expect = 0.0
Identities = 365/528 (69%), Positives = 376/528 (71%), Gaps = 60/528 (11%)
Frame = +3
Query: 534 AVPQVPSPPCCLCPEGVHRFQWIRSLVPEFGVSSSHVRVLASPAEFFELMKGQIRAAQRR 713
AVPQVPSPPCCLCPEGVHRFQ PEFGVSSSHVRVLASPAEFFELMKGQIRAAQRR
Sbjct: 161 AVPQVPSPPCCLCPEGVHRFQXXXXXXPEFGVSSSHVRVLASPAEFFELMKGQIRAAQRR 220
Query: 714 VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL 893
VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL
Sbjct: 221 VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL 280
Query: 894 PLLQRFPEQVRVSLFHTPNLRGLFRLLLPERLNETIGLQHIKVYLFDDNVILS------- 1052
PLLQRFPEQV VSLFHTPNLRGLFRLLLPERLNE ++ +V V+
Sbjct: 281 PLLQRFPEQVWVSLFHTPNLRGLFRLLLPERLNE-XSRENSRVRNPGPLVLKQXFSSLTR 339
Query: 1053 -----GANLSDSYFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGM 1217
ANLSDSYFTNRQDRY IADFFTELVDAVGDVSLQLQGDDTVQVVEGM
Sbjct: 340 CFPPCSANLSDSYFTNRQDRY--------IADFFTELVDAVGDVSLQLQGDDTVQVVEGM 391
Query: 1218 VHPYKGDRA------------------------AYCKAANKRV----------------- 1274
VHPYKG RA A +AA ++
Sbjct: 392 VHPYKGPRAGMTAERRACSGKSESRPPARGPAGAGARAAGEKQPRGVGGVAAALGPLPSV 451
Query: 1275 -------MDVINSARIRQQMLHAQTFHGDSLWTQEDAAASGDRRPALDTWIYPLIQMKPF 1433
+ + S + + DSLWTQEDAAASGDRRPALDTWI MKPF
Sbjct: 452 RRGAFAGLRPVLSGHVLKDXXXXXXXXXDSLWTQEDAAASGDRRPALDTWIXXXXXMKPF 511
Query: 1434 AIQIDXXXXXXXXXXAERGARVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 1613
AIQID AERGARVYLTTGYFNLTQAYMD RAEYQILLASPEVNGFFG
Sbjct: 512 AIQIDELVTETLLTEAERGARVYLTTGYFNLTQAYMDXXXXXRAEYQILLASPEVNGFFG 571
Query: 1614 AKGVAGAIPAAYVHIERQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPS 1793
AKGVAGAIP RQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPS
Sbjct: 572 AKGVAGAIPXXXXXXXRQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPS 631
Query: 1794 LTLIGSPYFGYRSVHRDLEAQIAIVTESRAXXXXXXXXXXXXXXRSGV 1937
LTLIGSP FGYRSVHRDLEAQIAIVTESRA RSGV
Sbjct: 632 LTLIGSPNFGYRSVHRDLEAQIAIVTESRALQQQLTRLQEQLYLRSGV 679
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,345,918
Number of extensions: 1002777
Number of successful extensions: 5886
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5870
Number of HSP's successfully gapped: 2
Length of query: 646
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 541
Effective length of database: 8,729,747
Effective search space: 4722793127
Effective search space used: 4722793127
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008473
(1938 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598518.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phos... 819 0.0
>ref|NP_598518.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase,
mitochondrial [Mus musculus].
Length = 553
Score = 819 bits (2116), Expect = 0.0
Identities = 411/467 (88%), Positives = 430/467 (92%)
Frame = +3
Query: 537 VPQVPSPPCCLCPEGVHRFQWIRSLVPEFGVSSSHVRVLASPAEFFELMKGQIRAAQRRV 716
VPQV SPPCCLCPEGVHRFQWIR+LVPEFGVSSSHVRVL+SPAEFFELMKGQI+ A+RRV
Sbjct: 59 VPQVTSPPCCLCPEGVHRFQWIRNLVPEFGVSSSHVRVLSSPAEFFELMKGQIKIAKRRV 118
Query: 717 VMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLLP 896
VMASLYLGTGPLEQELVDCLES+LEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLLP
Sbjct: 119 VMASLYLGTGPLEQELVDCLESSLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLLP 178
Query: 897 LLQRFPEQVRVSLFHTPNLRGLFRLLLPERLNETIGLQHIKVYLFDDNVILSGANLSDSY 1076
LLQRFPE+VRVSLFHTPNLRGL RLL+PER NETIGLQHIKVYLFD+NVILSGANLSDSY
Sbjct: 179 LLQRFPERVRVSLFHTPNLRGLLRLLIPERFNETIGLQHIKVYLFDNNVILSGANLSDSY 238
Query: 1077 FTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGMVHPYKGDRAAYCK 1256
FTNRQDRYVFLQDC EIADFFTELVDAVGDVSLQLQGDDTV+VV+GMVHPYKGDRAAYC+
Sbjct: 239 FTNRQDRYVFLQDCAEIADFFTELVDAVGDVSLQLQGDDTVEVVDGMVHPYKGDRAAYCR 298
Query: 1257 AANKRVMDVINSARIRQQMLHAQTFHGDSLWTQEDAAASGDRRPALDTWIYPLIQMKPFA 1436
AANKRVMDVI+SAR RQQMLHAQTFH DSL +QE+AAA+GDRRPA DTWIYPLIQMKPF
Sbjct: 299 AANKRVMDVIHSARARQQMLHAQTFHSDSLLSQEEAAAAGDRRPAPDTWIYPLIQMKPFE 358
Query: 1437 IQIDXXXXXXXXXXAERGARVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFGA 1616
IQID AERGA+V+LTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFGA
Sbjct: 359 IQIDEIVTETLLTEAERGAKVFLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFGA 418
Query: 1617 KGVAGAIPAAYVHIERQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPSL 1796
KGVAGAIPAAYVHIERQFYSEV SLGQQ+RVQLQEYWRRGWTFHAKGLWLYLAGSSLP L
Sbjct: 419 KGVAGAIPAAYVHIERQFYSEVCSLGQQDRVQLQEYWRRGWTFHAKGLWLYLAGSSLPCL 478
Query: 1797 TLIGSPYFGYRSVHRDLEAQIAIVTESRAXXXXXXXXXXXXXXRSGV 1937
TLIGSP FGYRSVHRDLEAQIAIVTESR+ RSGV
Sbjct: 479 TLIGSPNFGYRSVHRDLEAQIAIVTESRSLQQQLHQEQEQLYLRSGV 525
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,286,556
Number of extensions: 1286281
Number of successful extensions: 6407
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6392
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 538
Effective length of database: 12,373,671
Effective search space: 6657034998
Effective search space used: 6657034998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008473
(1938 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077733.3| CDP-diacylglycerol--glycerol-3-phosphate 3-phos... 821 0.0
>ref|NP_077733.3| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase,
mitochondrial precursor [Homo sapiens].
Length = 556
Score = 821 bits (2121), Expect = 0.0
Identities = 414/468 (88%), Positives = 430/468 (91%)
Frame = +3
Query: 534 AVPQVPSPPCCLCPEGVHRFQWIRSLVPEFGVSSSHVRVLASPAEFFELMKGQIRAAQRR 713
AVPQV SPPCCLCPEGVHRFQWIR+LVPEFGVSSSHVRVL+SPAEFFELMKGQIR A+RR
Sbjct: 61 AVPQVTSPPCCLCPEGVHRFQWIRNLVPEFGVSSSHVRVLSSPAEFFELMKGQIRVAKRR 120
Query: 714 VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLL 893
VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPS+LKVSILLDFTRGSRGRKNSRTMLL
Sbjct: 121 VVMASLYLGTGPLEQELVDCLESTLEKSLQAKFPSNLKVSILLDFTRGSRGRKNSRTMLL 180
Query: 894 PLLQRFPEQVRVSLFHTPNLRGLFRLLLPERLNETIGLQHIKVYLFDDNVILSGANLSDS 1073
PLL+RFPEQVRVSLFHTP+LRGL RLL+PER NETIGLQHIKVYLFD++VILSGANLSDS
Sbjct: 181 PLLRRFPEQVRVSLFHTPHLRGLLRLLIPERFNETIGLQHIKVYLFDNSVILSGANLSDS 240
Query: 1074 YFTNRQDRYVFLQDCPEIADFFTELVDAVGDVSLQLQGDDTVQVVEGMVHPYKGDRAAYC 1253
YFTNRQDRYVFLQDC EIADFFTELVDAVGDVSLQLQGDDTVQVV+GMVHPYKGDRA YC
Sbjct: 241 YFTNRQDRYVFLQDCAEIADFFTELVDAVGDVSLQLQGDDTVQVVDGMVHPYKGDRAEYC 300
Query: 1254 KAANKRVMDVINSARIRQQMLHAQTFHGDSLWTQEDAAASGDRRPALDTWIYPLIQMKPF 1433
KAANKRVMDVINSAR RQQMLHAQTFH +SL TQEDAAA+GDRRPA DTWIYPLIQMKPF
Sbjct: 301 KAANKRVMDVINSARTRQQMLHAQTFHSNSLLTQEDAAAAGDRRPAPDTWIYPLIQMKPF 360
Query: 1434 AIQIDXXXXXXXXXXAERGARVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 1613
IQID AERGA+VYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG
Sbjct: 361 EIQIDEIVTETLLTEAERGAKVYLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFG 420
Query: 1614 AKGVAGAIPAAYVHIERQFYSEVRSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPS 1793
AKGVAGAIPAAYVHIERQF+SEV SLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLP
Sbjct: 421 AKGVAGAIPAAYVHIERQFFSEVCSLGQQERVQLQEYWRRGWTFHAKGLWLYLAGSSLPC 480
Query: 1794 LTLIGSPYFGYRSVHRDLEAQIAIVTESRAXXXXXXXXXXXXXXRSGV 1937
LTLIGSP FGYRSVHRDLEAQIAIVTE++A RSGV
Sbjct: 481 LTLIGSPNFGYRSVHRDLEAQIAIVTENQALQQQLHQEQEQLYLRSGV 528
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,066,930
Number of extensions: 1552433
Number of successful extensions: 8052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8027
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 537
Effective length of database: 14,704,088
Effective search space: 7896095256
Effective search space used: 7896095256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008473
(1938 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896153.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 262 6e-67
>gb|GL896153.1| Sus scrofa unplaced genomic scaffold chrU_scaffold521
Length = 32724
Score = 262 bits (132), Expect = 6e-67
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 1754 aggcctctggctctacctggcagggagcagcctgccctctctcacgttgattggctctcc 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26909 aggcctctggctctacctggcagggagcagcctgccctctctcacgttgattggctctcc 26968
Query: 1814 ctattttgggtacaggtcagtgcaccgggacctggaggcccagatcgccatcgtgacgga 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26969 taattttgggtacaggtcagtgcaccgggacctggaggcccagatcgccatcgtgacgga 27028
Query: 1874 gagccgggccctgcagcagcagct 1897
||||||||| ||||||||||||||
Sbjct: 27029 gagccgggctctgcagcagcagct 27052
Score = 258 bits (130), Expect = 1e-65
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 863 aggaaggaagaactcgcgcacgatgctgctcccgctcctgcagaggtttccagagcaggt 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12035 aggaaggaagaactcgcgcacgatgctgctcccgctcctgcagaggtttccagagcaggt 12094
Query: 923 ccgggtctccctcttccacacgcctaacctgcgggggctcttccggctcctcctccccga 982
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12095 ctgggtctccctcttccacacgcctaacctgcgggggctcttccggctcctcctccccga 12154
Query: 983 gcgcctcaacgaga 996
||||||||||||||
Sbjct: 12155 gcgcctcaacgaga 12168
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1421 gatgaagccctttgcgattcagatcgacgagctcgtcaccgagaccctgctgacggaggc 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16174 gatgaagccctttgcgattcagatcgacgagctcgtcaccgagaccctgctgacggaggc 16233
Query: 1481 cgagcgaggcgccagggtctacctcaccaccggctacttcaacctgacccaggcctacat 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16234 cgagcgaggcgccagggtctacctcaccaccggctacttcaacctgacccaggcctacat 16293
Query: 1541 ggac 1544
||||
Sbjct: 16294 ggac 16297
Score = 222 bits (112), Expect = 6e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1124 gattgcagacttcttcacggagctggtggacgcggtgggggacgtgtccctgcagttgca 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12775 gattgcagacttcttcacggagctggtggacgcggtgggggacgtgtccctgcagttgca 12834
Query: 1184 gggggacgacacggtgcaggtggtggaggggatggtgcatccgtacaaaggt 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12835 gggggacgacacggtgcaggtggtggaggggatggtgcatccgtacaaaggt 12886
Score = 202 bits (102), Expect = 5e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 764 ggtggattgcctggaaagcactctagagaagtcactccaagcgaagtttccttctgatct 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11118 ggtggattgcctggaaagcactctagagaagtcactccaagcgaagtttccttctgatct 11177
Query: 824 caaggtgtccattctcttagacttcacgcggggctcacgagg 865
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11178 caaggtgtccattctcttagacttcacgcggggctcacgagg 11219
Score = 198 bits (100), Expect = 8e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 498 aggtcaccatggctgttggctccgctgctgtccccagccgtcccccaggtcccctcgcct 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280 aggtcaccatggctgttggctccgctgctgtccccagccgtcccccaggtcccctcgcct 5339
Query: 558 ccttgctgcctgtgtccagagggcgtgcatcgcttccagt 597
||||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 ccttgctgcctgtgtccagagggcgtgcatcgcttccagt 5379
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1661 gcggcagttctacagcgaggtgcgcagcctggggcagcaggagcgggtccagctgcagga 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16580 gcggcagttctacagcgaggtgcgcagcctggggcagcaggagcgggtccagctgcagga 16639
Query: 1721 gtactggcggaggggctggacgtttcacgccaaagg 1756
||||||||||||||||||||||||||||||||||||
Sbjct: 16640 gtactggcggaggggctggacgtttcacgccaaagg 16675
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 685 aggggcagataagagcagcccagcggcgagtggtgatggcgtcgctctacctggggacgg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8796 aggggcagataagagcagcccagcggcgagtggtgatggcgtcgctctacctggggacgg 8855
Query: 745 gccctttggagcaggagctggt 766
||||||||||||||||||||||
Sbjct: 8856 gccctttggagcaggagctggt 8877
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1558 cgcgggccgagtaccagatcctgctggcctcgccggaggtgaacggcttcttcggggcca 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16398 cgcgggccgagtaccagatcctgctggcctcgccggaggtgaacggcttcttcggggcca 16457
Query: 1618 agggggtggcgggcgccatccc 1639
||||||||||||||||||||||
Sbjct: 16458 agggggtggcgggcgccatccc 16479
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 615 ccagagtttggggtctccagctctcacgtcagggtgcttgcttcgccagcagagtttttt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 ccagagtttggggtctccagctctcacgtcagggtgcttgcttcgccagcagagtttttt 5539
Query: 675 gagctcatgaagg 687
|||||||||||||
Sbjct: 5540 gagctcatgaagg 5552
Score = 139 bits (70), Expect = 6e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1338 gactccctctggacccaggaagacgcggcggcctctggtgaccggaggccggccctggac 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16004 gactccctctggacccaggaagacgcggcggcctctggtgaccggaggccggccctggac 16063
Query: 1398 acctggatct 1407
||||||||||
Sbjct: 16064 acctggatct 16073
Score = 99.6 bits (50), Expect = 6e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 1054 gtgcaaacctgagtgactcctacttcaccaaccggcaggaccgctacgtg 1103
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12625 gtgcaaacctgagtgactcctacttcaccaaccggcaggaccgctacgtg 12674
Score = 77.8 bits (39), Expect = 2e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 1896 cttcaccaggagcaggagcagctctacctgaggtcgggggtgg 1938
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 32044 cttccccaggagcaggagcagctctacctgaggtcgggggtgg 32086
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,338,116
Number of extensions: 247
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 13
Length of query: 1938
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1916
Effective length of database: 2,808,408,574
Effective search space: 5380910827784
Effective search space used: 5380910827784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)