Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008476
(1202 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015660.1| hypothetical protein LOC535402 [Bos taurus]. 330 1e-90
Alignment gi|NP_001193232.1| hypothetical protein LOC519943 [Bos taurus]. 266 2e-71
Alignment gi|XP_002692995.1| PREDICTED: CG4452-like [Bos taurus]. 266 2e-71
>ref|NP_001015660.1| hypothetical protein LOC535402 [Bos taurus].
Length = 307
Score = 330 bits (847), Expect = 1e-90
Identities = 155/170 (91%), Positives = 155/170 (91%), Gaps = 1/170 (0%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGG-HYN 568
LLCWLCTLSYKRVLQKTKEQRKHLSSSSR SH EKEQYSRLSGG HYN
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRASHHEKEQYSRLSGGSHYN 170
>ref|NP_001193232.1| hypothetical protein LOC519943 [Bos taurus].
Length = 339
Score = 266 bits (681), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHAKHHHHHH 176
>ref|XP_002692995.1| PREDICTED: CG4452-like [Bos taurus].
Length = 339
Score = 266 bits (681), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHAKHHHHHH 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,274,504
Number of extensions: 1102595
Number of successful extensions: 2503
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2484
Number of HSP's successfully gapped: 3
Length of query: 400
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 296
Effective length of database: 14,240,222
Effective search space: 4215105712
Effective search space used: 4215105712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008476
(1202 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535343.1| PREDICTED: similar to CG4452-PA, isoform A [Can... 326 2e-89
Alignment gi|XP_856060.1| PREDICTED: similar to CG4452-PA, isoform A isof... 266 2e-71
Alignment gi|XP_542235.2| PREDICTED: similar to CG4452-PA, isoform A isof... 266 2e-71
Alignment gi|XP_855985.1| PREDICTED: similar to CG4452-PA, isoform A isof... 266 2e-71
Alignment gi|XP_848326.1| PREDICTED: similar to CG4452-PA, isoform A isof... 266 2e-71
>ref|XP_535343.1| PREDICTED: similar to CG4452-PA, isoform A [Canis familiaris].
Length = 306
Score = 326 bits (836), Expect = 2e-89
Identities = 151/169 (89%), Positives = 151/169 (89%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRKHLSSSSR SHQEKEQY G HYN
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRASHQEKEQYRLSGGSHYN 169
>ref|XP_856060.1| PREDICTED: similar to CG4452-PA, isoform A isoform 6 [Canis
familiaris].
Length = 233
Score = 266 bits (681), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHH 176
>ref|XP_542235.2| PREDICTED: similar to CG4452-PA, isoform A isoform 1 [Canis
familiaris].
Length = 231
Score = 266 bits (681), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHH 176
>ref|XP_855985.1| PREDICTED: similar to CG4452-PA, isoform A isoform 5 [Canis
familiaris].
Length = 315
Score = 266 bits (681), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHH 176
>ref|XP_848326.1| PREDICTED: similar to CG4452-PA, isoform A isoform 2 [Canis
familiaris].
Length = 339
Score = 266 bits (681), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHH 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,797,485
Number of extensions: 804978
Number of successful extensions: 2596
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 5
Length of query: 400
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 295
Effective length of database: 15,374,224
Effective search space: 4535396080
Effective search space used: 4535396080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008476
(1202 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230389.1| family with sequence similarity 76, member A... 341 5e-94
Alignment gi|XP_003129841.2| PREDICTED: protein FAM76B-like isoform 1 [Su... 266 2e-71
>ref|NP_001230389.1| family with sequence similarity 76, member A [Sus scrofa].
Length = 170
Score = 341 bits (874), Expect = 5e-94
Identities = 158/170 (92%), Positives = 158/170 (92%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGGHYNR 571
LLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGGHYNR
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGGHYNR 170
>ref|XP_003129841.2| PREDICTED: protein FAM76B-like isoform 1 [Sus scrofa].
Length = 378
Score = 266 bits (680), Expect = 2e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKGLGSSHSNSSSSSLTEKDQHHSKHHHHHH 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,865,943
Number of extensions: 1188568
Number of successful extensions: 1636
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1627
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,829,335
Effective search space: 2639971165
Effective search space used: 2639971165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008476
(1202 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157264.1| hypothetical protein LOC230789 isoform B [Mu... 332 5e-91
Alignment gi|NP_663528.1| hypothetical protein LOC230789 isoform A [Mus m... 332 5e-91
Alignment gi|NP_789806.1| hypothetical protein LOC72826 [Mus musculus]. 263 2e-70
>ref|NP_001157264.1| hypothetical protein LOC230789 isoform B [Mus musculus].
Length = 278
Score = 332 bits (850), Expect = 5e-91
Identities = 156/170 (91%), Positives = 156/170 (91%), Gaps = 1/170 (0%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGG-HYN 568
LLCWLCTLSYKRVLQKTKEQRKHLSSSSR SHQEKEQYSRLSGG HYN
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRGSHQEKEQYSRLSGGSHYN 170
>ref|NP_663528.1| hypothetical protein LOC230789 isoform A [Mus musculus].
Length = 307
Score = 332 bits (850), Expect = 5e-91
Identities = 156/170 (91%), Positives = 156/170 (91%), Gaps = 1/170 (0%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLSGG-HYN 568
LLCWLCTLSYKRVLQKTKEQRKHLSSSSR SHQEKEQYSRLSGG HYN
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRGSHQEKEQYSRLSGGSHYN 170
>ref|NP_789806.1| hypothetical protein LOC72826 [Mus musculus].
Length = 339
Score = 263 bits (673), Expect = 2e-70
Identities = 126/173 (72%), Positives = 140/173 (80%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYG P +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGAPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHH 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,683,975
Number of extensions: 694803
Number of successful extensions: 2449
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2429
Number of HSP's successfully gapped: 3
Length of query: 400
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 296
Effective length of database: 12,493,815
Effective search space: 3698169240
Effective search space used: 3698169240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008476
(1202 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001137386.1| hypothetical protein LOC199870 isoform 4 [Ho... 331 9e-91
Alignment gi|NP_689873.1| hypothetical protein LOC199870 isoform 3 [Homo ... 331 9e-91
Alignment gi|NP_001137385.1| hypothetical protein LOC199870 isoform 2 [Ho... 311 6e-85
Alignment gi|NP_001137384.1| hypothetical protein LOC199870 isoform 1 [Ho... 311 6e-85
Alignment gi|NP_653265.3| hypothetical protein LOC143684 [Homo sapiens]. 266 3e-71
Alignment gi|NP_001137387.1| hypothetical protein LOC199870 isoform 5 [Ho... 206 5e-53
>ref|NP_001137386.1| hypothetical protein LOC199870 isoform 4 [Homo sapiens].
Length = 278
Score = 331 bits (848), Expect = 9e-91
Identities = 155/170 (91%), Positives = 155/170 (91%), Gaps = 1/170 (0%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLS-GGHYN 568
LLCWLCTLSYKRVLQKTKEQRKHLSSSSR HQEKEQYSRLS GGHYN
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRAGHQEKEQYSRLSGGGHYN 170
>ref|NP_689873.1| hypothetical protein LOC199870 isoform 3 [Homo sapiens].
Length = 307
Score = 331 bits (848), Expect = 9e-91
Identities = 155/170 (91%), Positives = 155/170 (91%), Gaps = 1/170 (0%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF
Sbjct: 61 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVD 120
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLS-GGHYN 568
LLCWLCTLSYKRVLQKTKEQRKHLSSSSR HQEKEQYSRLS GGHYN
Sbjct: 121 GKLLCWLCTLSYKRVLQKTKEQRKHLSSSSRAGHQEKEQYSRLSGGGHYN 170
>ref|NP_001137385.1| hypothetical protein LOC199870 isoform 2 [Homo sapiens].
Length = 312
Score = 311 bits (798), Expect = 6e-85
Identities = 154/204 (75%), Positives = 154/204 (75%), Gaps = 35/204 (17%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQES----------- 208
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQE
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
Query: 209 -----------------------KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 319
KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ
Sbjct: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
Query: 320 RCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXXXXLLCWLCTLSYKRVLQKTKEQRKHL 499
RCTNSEKKYGPPYSCEQCKQQCAF LLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
Query: 500 SSSSRTSHQEKEQYSRLS-GGHYN 568
SSSSR HQEKEQYSRLS GGHYN
Sbjct: 181 SSSSRAGHQEKEQYSRLSGGGHYN 204
>ref|NP_001137384.1| hypothetical protein LOC199870 isoform 1 [Homo sapiens].
Length = 341
Score = 311 bits (798), Expect = 6e-85
Identities = 154/204 (75%), Positives = 154/204 (75%), Gaps = 35/204 (17%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQES----------- 208
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQE
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
Query: 209 -----------------------KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 319
KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ
Sbjct: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
Query: 320 RCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXXXXLLCWLCTLSYKRVLQKTKEQRKHL 499
RCTNSEKKYGPPYSCEQCKQQCAF LLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
Query: 500 SSSSRTSHQEKEQYSRLS-GGHYN 568
SSSSR HQEKEQYSRLS GGHYN
Sbjct: 181 SSSSRAGHQEKEQYSRLSGGGHYN 204
>ref|NP_653265.3| hypothetical protein LOC143684 [Homo sapiens].
Length = 339
Score = 266 bits (680), Expect = 3e-71
Identities = 127/173 (73%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = +2
Query: 65 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQN 244
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQESKTNTICKKCAQN
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQN 63
Query: 245 VQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAF-XXXXXXXXXX 421
V+ +GTPKPCQYCNIIAAFIG KCQRCTNSEKKYGPP +CEQCKQQCAF
Sbjct: 64 VKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVD 123
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHL----SSSSRTSHQEKEQYSRLSGGHYN 568
LLCWLCTLSYKRVLQKTKEQRK L S+SS +S EK+Q+ H++
Sbjct: 124 GKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHH 176
>ref|NP_001137387.1| hypothetical protein LOC199870 isoform 5 [Homo sapiens].
Length = 227
Score = 206 bits (523), Expect = 5e-53
Identities = 110/170 (64%), Positives = 110/170 (64%), Gaps = 1/170 (0%)
Frame = +2
Query: 62 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 241
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQ 60
Query: 242 NVQLYGTPKPCQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFXXXXXXXXXX 421
NVQLYGT C
Sbjct: 61 NVQLYGTVDGKLLC---------------------------------------------- 74
Query: 422 XXLLCWLCTLSYKRVLQKTKEQRKHLSSSSRTSHQEKEQYSRLS-GGHYN 568
WLCTLSYKRVLQKTKEQRKHLSSSSR HQEKEQYSRLS GGHYN
Sbjct: 75 -----WLCTLSYKRVLQKTKEQRKHLSSSSRAGHQEKEQYSRLSGGGHYN 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,364,999
Number of extensions: 788501
Number of successful extensions: 2638
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2613
Number of HSP's successfully gapped: 9
Length of query: 400
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 295
Effective length of database: 14,835,944
Effective search space: 4376603480
Effective search space used: 4376603480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008476
(1202 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 769 0.0
Sscrofa_Chr09 113 2e-22
>Sscrofa_Chr06
|| Length = 157765593
Score = 769 bits (388), Expect = 0.0
Identities = 388/388 (100%)
Strand = Plus / Minus
Query: 414 aggtagatgggaaattgctgtgctggctgtgtacactttcatataaacgggtccttcaga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78435429 aggtagatgggaaattgctgtgctggctgtgtacactttcatataaacgggtccttcaga 78435370
Query: 474 agaccaaagagcagaggaagcacctgagcagctcttcccgtacaagccaccaggagaagg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78435369 agaccaaagagcagaggaagcacctgagcagctcttcccgtacaagccaccaggagaagg 78435310
Query: 534 agcagtacagtcgactgagtggtggccattataacaggtaaccccaagatgcataagact 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78435309 agcagtacagtcgactgagtggtggccattataacaggtaaccccaagatgcataagact 78435250
Query: 594 tagaggtgctaggaggtcagatgtcatacagaatgtaatgcagagttagccatggaatac 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78435249 tagaggtgctaggaggtcagatgtcatacagaatgtaatgcagagttagccatggaatac 78435190
Query: 654 catttcagctaaattttcctattttctctctagatactatagagggactctcctttgttg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78435189 catttcagctaaattttcctattttctctctagatactatagagggactctcctttgttg 78435130
Query: 714 tgtttatgttcatgtatcattcaagggccagagagacatctgtaaggattttcagactgg 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78435129 tgtttatgttcatgtatcattcaagggccagagagacatctgtaaggattttcagactgg 78435070
Query: 774 tttttgttgtgtcttaaaagtttgtgga 801
||||||||||||||||||||||||||||
Sbjct: 78435069 tttttgttgtgtcttaaaagtttgtgga 78435042
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 262 gcccaaaccttgtcagtattgcaacataattgcagcatttattggcaacaaatgccagcg 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 78441277 gcccaaaccttgtcagtattgcaacataattgcagcgtttattggcaacaaatgccagcg 78441218
Query: 322 ttgcacaaattcagagaagaagtatggaccaccatattcttgtgaacagtgcaaacagca 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78441217 ttgcacaaattcagagaagaagtatggaccaccatattcttgtgaacagtgcaaacagca 78441158
Query: 382 gtgtgcatttgacaggaaagatgatagaaagaaggta 418
|||||||||||||||||||||||||||||||||||||
Sbjct: 78441157 gtgtgcatttgacaggaaagatgatagaaagaaggta 78441121
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 41 tgagcacggcccgggccggacatggcggcgctctacgcctgcaccaagtgccaccagcgc 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78446556 tgagcacggcccgggccggacatggcggcgctctacgcctgcaccaagtgccaccagcgc 78446497
Query: 101 ttccccttcgaggcgctgtctcaggggcagcagctgtgcaagg 143
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78446496 ttccccttcgaggcgctgtctcaggggcagcagctgtgcaagg 78446454
Score = 151 bits (76), Expect = 1e-33
Identities = 86/90 (95%)
Strand = Plus / Minus
Query: 1043 ttccaggaacagatttccaagagaaagaggctgtcctctctgagaactatgaccnntcta 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 78434800 ttccaggaacagatttccaagagaaagaggctgtcctctctgagaactatgacctcttaa 78434741
Query: 1103 atctcagttcagtcaaaatgagatgttctt 1132
||||||||||||||||||||||||||||||
Sbjct: 78434740 atctcagttcagtcaaaatgagatgttctt 78434711
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 141 aggaatgtcggattgcacaccctgttgtgaagtgcacctactgtaggactgagtaccagc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78445142 aggaatgtcggattgcacaccctgttgtgaagtgcacctactgtaggactgagtaccagc 78445083
Query: 201 aggagag 207
|||||||
Sbjct: 78445082 aggagag 78445076
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 206 agtaaaaccaatactatatgcaagaaatgtgctcagaatgtgcagttgtatggaacg 262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78442202 agtaaaaccaatactatatgcaagaaatgtgctcagaatgtgcagttgtatggaacg 78442146
>Sscrofa_Chr09
|| Length = 153670197
Score = 113 bits (57), Expect = 2e-22
Identities = 108/125 (86%)
Strand = Plus / Minus
Query: 269 ccttgtcagtattgcaacataattgcagcatttattggcaacaaatgccagcgttgcaca 328
||||||||||| || ||||||||||||||||||||||| | || || ||||||||||||
Sbjct: 31724420 ccttgtcagtactgtaacataattgcagcatttattggtacaaagtgtcagcgttgcaca 31724361
Query: 329 aattcagagaagaagtatggaccaccatattcttgtgaacagtgcaaacagcagtgtgca 388
|||||||| || || ||||||||||| | | ||||||||||||||||| ||||||||
Sbjct: 31724360 aattcagaaaaaaaatatggaccacctcagacctgtgaacagtgcaaacaacagtgtgct 31724301
Query: 389 tttga 393
|||||
Sbjct: 31724300 tttga 31724296
Score = 67.9 bits (34), Expect = 1e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 74 tacgcctgcaccaagtgccaccagcgcttccccttcgaggcgctgtctcaggggcagcag 133
|||||||||||||||||| |||||||| |||||||||| ||| || ||||| ||||||
Sbjct: 31727606 tacgcctgcaccaagtgcacccagcgctatcccttcgaggagctctcccagggccagcag 31727547
Query: 134 ctgtgcaagg 143
|| |||||||
Sbjct: 31727546 ctctgcaagg 31727537
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,767,512
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 1202
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1181
Effective length of database: 2,808,413,156
Effective search space: 3316735937236
Effective search space used: 3316735937236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)