Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008478
(2788 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073696.1| ADP-ribosylation factor GTPase-activating pr... 875 0.0
Alignment gi|NP_001069442.1| ADP-ribosylation factor GTPase-activating pr... 458 e-128
Alignment gi|NP_001068732.1| ADP-ribosylation factor GTPase-activating pr... 103 6e-22
Alignment gi|NP_001069138.1| stromal membrane-associated protein 2 [Bos t... 89 3e-17
Alignment gi|XP_002690053.1| PREDICTED: small ArfGAP 1 isoform 1 [Bos tau... 85 3e-16
Alignment gi|XP_002690054.1| PREDICTED: small ArfGAP 1 isoform 2 [Bos tau... 82 3e-15
Alignment gi|NP_001077156.1| arf-GAP with coiled-coil, ANK repeat and PH ... 77 6e-14
Alignment gi|NP_787015.1| arf-GAP with SH3 domain, ANK repeat and PH doma... 77 8e-14
Alignment gi|NP_001178968.1| arf-GAP with GTPase, ANK repeat and PH domai... 74 7e-13
Alignment gi|XP_002687603.1| PREDICTED: ArfGAP with GTPase domain, ankyri... 74 7e-13
>ref|NP_001073696.1| ADP-ribosylation factor GTPase-activating protein 2 [Bos taurus].
Length = 520
Score = 875 bits (2262), Expect = 0.0
Identities = 446/520 (85%), Positives = 457/520 (87%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEP+KTEIQT FKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPNKTEIQTFFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDS W+WFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSTWSWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTDLW D++S+APSHSPEKK+SDFF EHTQPPAW+AP TDLSETQQPAPSA
Sbjct: 121 LGSAALARHGTDLWTDSVSTAPSHSPEKKESDFFLEHTQPPAWNAPVTDLSETQQPAPSA 180
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSF 749
ESSGLAQPEHGPNMDLLGTSPKASLE KTSLI QKVSSQSF
Sbjct: 181 ESSGLAQPEHGPNMDLLGTSPKASLEPKTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSF 240
Query: 750 SEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 929
SEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE
Sbjct: 241 SEIERQAQVAEKLREQQVADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 300
Query: 930 QAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 1109
QAERLGMG EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN
Sbjct: 301 QAERLGMGLVSRSSVSHSVLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 360
Query: 1110 PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA 1289
PFSLGESFGSRWD D AWGMDRMEEKEPEVT+SSIRP+SERVTNRREVESRSSGLESSEA
Sbjct: 361 PFSLGESFGSRWDTDTAWGMDRMEEKEPEVTVSSIRPVSERVTNRREVESRSSGLESSEA 420
Query: 1290 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLG 1469
RQKFAGAKAISSDMFFGREVD+EYEARSRLQQL DLFGD+DGAHGAGSVSLG
Sbjct: 421 RQKFAGAKAISSDMFFGREVDTEYEARSRLQQLSGSSAISSSDLFGDVDGAHGAGSVSLG 480
Query: 1470 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 520
>ref|NP_001069442.1| ADP-ribosylation factor GTPase-activating protein 3 [Bos taurus].
Length = 517
Score = 458 bits (1179), Expect = e-128
Identities = 256/527 (48%), Positives = 339/527 (64%), Gaps = 11/527 (2%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I T+FKRLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNANA++FF QHGC ND N KYNSRAAQ+YRE+I+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCDTNDTNAKYNSRAAQLYRERIKALAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAWSA--PATDLSETQQPA 560
A +HGTDLW+D+ PS SP K+ DFF+ H P W++ P L+ A
Sbjct: 123 QATRKHGTDLWLDSCVVPPS-SPPPKEEDFFASHASPEVSSTGWASAQPEPSLTPRNVDA 181
Query: 561 PSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSS 740
P+A S G+ PE GP+++ L KA++ +S+I QK+S+
Sbjct: 182 PAASSEGV--PEQGPSVEGLNVPTKAAVGEVSSIIKKKPNQAKRGLGAKKGSLGAQKLSN 239
Query: 741 QSFSEIERQAQVAEKLR-XXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEG 917
F+EIE+QAQ +K+ S+V+S+RLAY++L+I KK+EK N+ G
Sbjct: 240 TCFNEIEKQAQAVDKMNAQEDLLSRAAPKEESIVSSLRLAYKDLEIQMKKDEK--MNMSG 297
Query: 918 KKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPP 1094
KK+ ++ERLGMG +MQ IEQETP++AK + D DD ++ +
Sbjct: 298 KKKAESERLGMGFGNSRSGISHSVTSDMQTIEQETPITAKPRKKYGDDSDD--SYFTSSS 355
Query: 1095 KYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSS 1268
++ D P L S S WD +D+ W + +++ +P I ++R T RR+ +S +
Sbjct: 356 RFFDEPMELRSSSFSSWDDSSDSYWKKETIKDTDP---IPKNTGYTDRPTTRRKPDSEPA 412
Query: 1269 GLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHG 1448
+ EA++KF KAISSDM+FGR+ ++YEAR+RL++L DLF D
Sbjct: 413 E-NTDEAQKKFGNVKAISSDMYFGRQAKADYEARARLERLSASSSISSADLF-DEQRKQT 470
Query: 1449 AGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
AGS +L +VLPTA D+AQFKQGV+SVAGK++V ANGVM S+QDRYGS
Sbjct: 471 AGSYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS 517
>ref|NP_001068732.1| ADP-ribosylation factor GTPase-activating protein 1 [Bos taurus].
Length = 405
Score = 103 bits (258), Expect = 6e-22
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +RA N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFF--RQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHG 419
+L M+ GGNA F ++ KY+SRAA ++R+++ AALA G
Sbjct: 68 KDVELEKMKAGGNARFREFLESQEDYDPCWSLQEKYSSRAAALFRDRV-----AALA-EG 121
Query: 420 TDLWIDNMSSAPSHSPEKKDSDFFSEH 500
+ W S A S +P + + S H
Sbjct: 122 KE-WSLESSPAQSWTPPQPRTLLSSAH 147
>ref|NP_001069138.1| stromal membrane-associated protein 2 [Bos taurus].
Length = 429
Score = 88.6 bits (218), Expect = 3e-17
Identities = 63/218 (28%), Positives = 92/218 (42%), Gaps = 20/218 (9%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
Q + L NK C DC +K P WAS GVF+CI C+G+HR+LGVH+S ++S LD
Sbjct: 13 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD- 71
Query: 240 NWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKI-------RQLGS 398
W Q++CMQ GN A + + + + R+K R L
Sbjct: 72 QWTQEQIQCMQEMGNGKANRLYEAY-LPETFRRPQIDHAVEGFIRDKYEKKKYMDRSLDI 130
Query: 399 AALARHGTDLWIDNMSSAPSHS-----------PEKKDSDFFSEHTQPPAWSAPATDLSE 545
A + + W AP P+KK+ T P + AP DL
Sbjct: 131 NAFRKEKDNKWKRGSEPAPEKKMEPVVFEKVKMPQKKEDPQLPRKTSPKS-KAPVVDLLG 189
Query: 546 TQQPAPSAESSGLAQPEHGPNMDLLG--TSPKASLELK 653
P + ++G ++DLL +SP +S+ K
Sbjct: 190 LDAPVSCSIANGKTSNTLEKDLDLLASVSSPSSSVSRK 227
>ref|XP_002690053.1| PREDICTED: small ArfGAP 1 isoform 1 [Bos taurus].
Length = 444
Score = 85.1 bits (209), Expect = 3e-16
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 4/200 (2%)
Frame = +3
Query: 36 AEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 215
A+ + Q + +L NK C DC AK P WAS GVF+CI C+G+HR+LGVH+S
Sbjct: 10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 69
Query: 216 IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLG 395
++S LD W Q++CMQ GN A + +AN N R Q + +
Sbjct: 70 VKSVNLD-QWTPEQIQCMQDMGNTKARLLY--------EANLPENFRRPQ----TDQAVE 116
Query: 396 SAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPAT----DLSETQQPAP 563
++ + D + A ++ ++K + + +P + P T E QQ P
Sbjct: 117 FFIRDKYEKKKYYDKNAIAITNKEKEKKKEEKKKEKEPEKPTKPLTTEKLQKKEDQQLEP 176
Query: 564 SAESSGLAQPEHGPNMDLLG 623
+S E P +DLLG
Sbjct: 177 KKSTSPKKAAE--PTVDLLG 194
>ref|XP_002690054.1| PREDICTED: small ArfGAP 1 isoform 2 [Bos taurus].
Length = 471
Score = 82.0 bits (201), Expect = 3e-15
Identities = 44/110 (40%), Positives = 59/110 (53%)
Frame = +3
Query: 36 AEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 215
A+ + Q + +L NK C DC AK P WAS GVF+CI C+G+HR+LGVH+S
Sbjct: 10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 69
Query: 216 IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQ 365
++S LD W Q++CMQ GN A + +AN N R Q
Sbjct: 70 VKSVNLD-QWTPEQIQCMQDMGNTKARLLY--------EANLPENFRRPQ 110
>ref|NP_001077156.1| arf-GAP with coiled-coil, ANK repeat and PH domain-containing
protein 3 [Bos taurus].
Length = 833
Score = 77.4 bits (189), Expect = 6e-14
Identities = 37/82 (45%), Positives = 51/82 (62%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
+++ +R++ + N C DCG +P WASI GV LCI+CSG+HRSLGVH S +RS LDS
Sbjct: 403 ESVLQRVQNVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDS 462
Query: 240 NWNWFQLRCMQVGGNANATAFF 305
W L+ M GN+ +
Sbjct: 463 -WEPELLKLMCELGNSTVNQIY 483
>ref|NP_787015.1| arf-GAP with SH3 domain, ANK repeat and PH domain-containing
protein 1 [Bos taurus].
Length = 1129
Score = 77.0 bits (188), Expect = 8e-14
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 15 WEGEKMAAEPSKTEI-QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHR 191
+ GE+ A E S E+ + + + ++ +P N C DCG+ P+W S G+ CI+CSG+HR
Sbjct: 426 FRGEQSAGESSLEELTKAIIEDVQRLPGNDVCCDCGSAEPTWLSTNLGILTCIECSGIHR 485
Query: 192 SLGVHLSFIRSTELDSNWNWFQLRCMQVGGNA 287
+GVH+S I+S ELD L VG N+
Sbjct: 486 EMGVHISRIQSLELDKLGTSELLLAKNVGNNS 517
>ref|NP_001178968.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2
[Bos taurus].
Length = 1188
Score = 73.9 bits (180), Expect = 7e-13
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 7/73 (9%)
Frame = +3
Query: 39 EPSKTEIQT-------LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 197
E SK +++T + +R N C DCGA NP+WAS+ G +CI+CSG+HR+L
Sbjct: 913 ESSKVKLRTDSQSEAVAIQAIRNAKGNSICVDCGAPNPTWASLNLGALICIECSGIHRNL 972
Query: 198 GVHLSFIRSTELD 236
G HLS +RS +LD
Sbjct: 973 GTHLSRVRSLDLD 985
>ref|XP_002687603.1| PREDICTED: ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
[Bos taurus].
Length = 1188
Score = 73.9 bits (180), Expect = 7e-13
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 7/73 (9%)
Frame = +3
Query: 39 EPSKTEIQT-------LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 197
E SK +++T + +R N C DCGA NP+WAS+ G +CI+CSG+HR+L
Sbjct: 913 ESSKVKLRTDSQSEAVAIQAIRNAKGNSICVDCGAPNPTWASLNLGALICIECSGIHRNL 972
Query: 198 GVHLSFIRSTELD 236
G HLS +RS +LD
Sbjct: 973 GTHLSRVRSLDLD 985
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 117,939,750
Number of extensions: 3731274
Number of successful extensions: 16923
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 16828
Number of HSP's successfully gapped: 37
Length of query: 929
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 817
Effective length of database: 13,975,518
Effective search space: 11417998206
Effective search space used: 11417998206
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008478
(2788 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540747.2| PREDICTED: similar to zinc finger protein 289, ... 855 0.0
Alignment gi|XP_861391.1| PREDICTED: similar to zinc finger protein 289, ... 845 0.0
Alignment gi|XP_861361.1| PREDICTED: similar to zinc finger protein 289, ... 841 0.0
Alignment gi|XP_861332.1| PREDICTED: similar to zinc finger protein 289, ... 822 0.0
Alignment gi|XP_857369.1| PREDICTED: similar to ADP-ribosylation factor G... 437 e-122
Alignment gi|XP_848847.1| PREDICTED: similar to ADP-ribosylation factor G... 437 e-122
Alignment gi|XP_857414.1| PREDICTED: similar to ADP-ribosylation factor G... 432 e-121
Alignment gi|XP_857331.1| PREDICTED: similar to ADP-ribosylation factor G... 430 e-120
Alignment gi|XP_531706.2| PREDICTED: similar to ADP-ribosylation factor G... 426 e-119
Alignment gi|XP_861308.1| PREDICTED: similar to zinc finger protein 289, ... 329 8e-90
>ref|XP_540747.2| PREDICTED: similar to zinc finger protein 289, ID1 regulated isoform
1 [Canis familiaris].
Length = 520
Score = 855 bits (2208), Expect = 0.0
Identities = 438/520 (84%), Positives = 449/520 (86%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEPSKTEIQTLFKRLR IPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPSKTEIQTLFKRLRGIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA+DANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTASDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTDLWIDN+SSAPSHSPEKKDSDFF+EHTQPPAW A D +ETQQ PS
Sbjct: 121 LGSAALARHGTDLWIDNVSSAPSHSPEKKDSDFFTEHTQPPAWKVQAPDPAETQQLTPST 180
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSF 749
E S LAQPEH PNMDLLGTSPKASLE +TSLI QKVSSQSF
Sbjct: 181 EISSLAQPEHSPNMDLLGTSPKASLEPRTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSF 240
Query: 750 SEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 929
SEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE
Sbjct: 241 SEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 300
Query: 930 QAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 1109
QAERLGMG EMQVIEQETPVSAKSSR+QLDLFDDVGTFASGPPKYKDN
Sbjct: 301 QAERLGMGLVSRSSISHSVLSEMQVIEQETPVSAKSSRAQLDLFDDVGTFASGPPKYKDN 360
Query: 1110 PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA 1289
PFSLGESF SRWD DAAWG+DRMEEKEPEVTISSIRPISERVTNRREVESR+SGLESSEA
Sbjct: 361 PFSLGESFSSRWDTDAAWGVDRMEEKEPEVTISSIRPISERVTNRREVESRNSGLESSEA 420
Query: 1290 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLG 1469
RQKFAGAKAISSDMFFGREVD+E+EARSRLQQL DLFGD+DGAHG GSVSLG
Sbjct: 421 RQKFAGAKAISSDMFFGREVDAEHEARSRLQQLSGSSAISSSDLFGDVDGAHGVGSVSLG 480
Query: 1470 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 520
>ref|XP_861391.1| PREDICTED: similar to zinc finger protein 289, ID1 regulated isoform
8 [Canis familiaris].
Length = 534
Score = 845 bits (2184), Expect = 0.0
Identities = 438/534 (82%), Positives = 449/534 (84%), Gaps = 14/534 (2%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEPSKTEIQTLFKRLR IPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPSKTEIQTLFKRLRGIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA+DANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTASDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTDLWIDN+SSAPSHSPEKKDSDFF+EHTQPPAW A D +ETQQ PS
Sbjct: 121 LGSAALARHGTDLWIDNVSSAPSHSPEKKDSDFFTEHTQPPAWKVQAPDPAETQQLTPST 180
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLEL--------------KTSLIXXXXXXXXXXXXXX 707
E S LAQPEH PNMDLLGTSPKASLE +TSLI
Sbjct: 181 EISSLAQPEHSPNMDLLGTSPKASLESMYLSPKGALPAREPRTSLIGKKKPAAAKKGLGA 240
Query: 708 XXXXXXQKVSSQSFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKK 887
QKVSSQSFSEIERQAQVAEKLR SMVASMRLAYQELQIDRKK
Sbjct: 241 KKGLGAQKVSSQSFSEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKK 300
Query: 888 EEKKLQNLEGKKREQAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDD 1067
EEKKLQNLEGKKREQAERLGMG EMQVIEQETPVSAKSSR+QLDLFDD
Sbjct: 301 EEKKLQNLEGKKREQAERLGMGLVSRSSISHSVLSEMQVIEQETPVSAKSSRAQLDLFDD 360
Query: 1068 VGTFASGPPKYKDNPFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRR 1247
VGTFASGPPKYKDNPFSLGESF SRWD DAAWG+DRMEEKEPEVTISSIRPISERVTNRR
Sbjct: 361 VGTFASGPPKYKDNPFSLGESFSSRWDTDAAWGVDRMEEKEPEVTISSIRPISERVTNRR 420
Query: 1248 EVESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFG 1427
EVESR+SGLESSEARQKFAGAKAISSDMFFGREVD+E+EARSRLQQL DLFG
Sbjct: 421 EVESRNSGLESSEARQKFAGAKAISSDMFFGREVDAEHEARSRLQQLSGSSAISSSDLFG 480
Query: 1428 DMDGAHGAGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
D+DGAHG GSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 DVDGAHGVGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 534
>ref|XP_861361.1| PREDICTED: similar to zinc finger protein 289, ID1 regulated isoform
7 [Canis familiaris].
Length = 525
Score = 841 bits (2173), Expect = 0.0
Identities = 435/525 (82%), Positives = 447/525 (85%), Gaps = 5/525 (0%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEPSKTEIQTLFKRLR IPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPSKTEIQTLFKRLRGIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA+DANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTASDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTDLWIDN+SSAPSHSPEKKDSDFF+EHTQPPAW A D +ETQQ PS
Sbjct: 121 LGSAALARHGTDLWIDNVSSAPSHSPEKKDSDFFTEHTQPPAWKVQAPDPAETQQLTPST 180
Query: 570 ESSGLAQP-----EHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
E S LA+ GPNMDLLGTSPKASLE +TSLI QKV
Sbjct: 181 EISSLAREFSPDFNQGPNMDLLGTSPKASLEPRTSLIGKKKPAAAKKGLGAKKGLGAQKV 240
Query: 735 SSQSFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLE 914
SSQSFSEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLE
Sbjct: 241 SSQSFSEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLE 300
Query: 915 GKKREQAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPP 1094
GKKREQAERLGMG EMQVIEQETPVSAKSSR+QLDLFDDVGTFASGPP
Sbjct: 301 GKKREQAERLGMGLVSRSSISHSVLSEMQVIEQETPVSAKSSRAQLDLFDDVGTFASGPP 360
Query: 1095 KYKDNPFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGL 1274
KYKDNPFSLGESF SRWD DAAWG+DRMEEKEPEVTISSIRPISERVTNRREVESR+SGL
Sbjct: 361 KYKDNPFSLGESFSSRWDTDAAWGVDRMEEKEPEVTISSIRPISERVTNRREVESRNSGL 420
Query: 1275 ESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAG 1454
ESSEARQKFAGAKAISSDMFFGREVD+E+EARSRLQQL DLFGD+DGAHG G
Sbjct: 421 ESSEARQKFAGAKAISSDMFFGREVDAEHEARSRLQQLSGSSAISSSDLFGDVDGAHGVG 480
Query: 1455 SVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
SVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 SVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 525
>ref|XP_861332.1| PREDICTED: similar to zinc finger protein 289, ID1 regulated isoform
6 [Canis familiaris].
Length = 522
Score = 822 bits (2124), Expect = 0.0
Identities = 430/532 (80%), Positives = 443/532 (83%), Gaps = 12/532 (2%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEPSKTEIQTLFKRLR IPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPSKTEIQTLFKRLRGIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA+DANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTASDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTDLWIDN+SSAPSHSPEKKDSDFF+EHTQ ++ETQQ PS
Sbjct: 121 LGSAALARHGTDLWIDNVSSAPSHSPEKKDSDFFTEHTQ----------VTETQQLTPST 170
Query: 570 ESSGL------------AQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXX 713
E S L +PEH PNMDLLGTSPKASLE +TSLI
Sbjct: 171 EISSLLCTLYLNSTIASTEPEHSPNMDLLGTSPKASLEPRTSLIGKKKPAAAKKGLGAKK 230
Query: 714 XXXXQKVSSQSFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEE 893
QKVSSQSFSEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEE
Sbjct: 231 GLGAQKVSSQSFSEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEE 290
Query: 894 KKLQNLEGKKREQAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVG 1073
KKLQNLEGKKREQAERLGMG EMQVIEQETPVSAKSSR+QLDLFDDVG
Sbjct: 291 KKLQNLEGKKREQAERLGMGLVSRSSISHSVLSEMQVIEQETPVSAKSSRAQLDLFDDVG 350
Query: 1074 TFASGPPKYKDNPFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREV 1253
TFASGPPKYKDNPFSLGESF SRWD DAAWG+DRMEEKEPEVTISSIRPISERVTNRREV
Sbjct: 351 TFASGPPKYKDNPFSLGESFSSRWDTDAAWGVDRMEEKEPEVTISSIRPISERVTNRREV 410
Query: 1254 ESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDM 1433
ESR+SGLESSEARQKFAGAKAISSDMFFGREVD+E+EARSRLQQL DLFGD+
Sbjct: 411 ESRNSGLESSEARQKFAGAKAISSDMFFGREVDAEHEARSRLQQLSGSSAISSSDLFGDV 470
Query: 1434 DGAHGAGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
DGAHG GSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 471 DGAHGVGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 522
>ref|XP_857369.1| PREDICTED: similar to ADP-ribosylation factor GTPase activating
protein 3 isoform 4 [Canis familiaris].
Length = 524
Score = 437 bits (1123), Expect = e-122
Identities = 247/534 (46%), Positives = 333/534 (62%), Gaps = 18/534 (3%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I ++F+RLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILSIFRRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNANA++FF QHGC ND N KYNSRAAQ+YRE+I+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAWSAPATDLS----ETQQ 554
A +HGTDLW+D+ P +P K+ DFF+ H P W++ ++S +
Sbjct: 123 QATRKHGTDLWLDS-CVVPPLTPPPKEEDFFASHVSPEVSGTGWASAQPEVSSLPPRNVE 181
Query: 555 PAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P+ G PE GP+++ L KA+ E+ +S+I QKV
Sbjct: 182 TTPANNEGG---PEQGPSVEGLNAPTKAASEV-SSIIKKKPNQAKRGLGAKKGSLGAQKV 237
Query: 735 SSQSFSEIERQAQVAEKLR-XXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNL 911
++ F+EIE+QAQ +K++ S+V+S+RLAY++L+I KK+EK N+
Sbjct: 238 TNTCFNEIEKQAQAVDKMKEQEDRLARAAPKEESIVSSLRLAYKDLEIQMKKDEK--VNM 295
Query: 912 EGKKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDD-----VG 1073
GKK+ ++ERLGMG +MQ IEQETP+ AK + D DD
Sbjct: 296 SGKKKIESERLGMGFGNCRSGISHSVTSDMQTIEQETPIVAKPRKKYSDDSDDSYFTSSS 355
Query: 1074 TFASGPPKYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERVTNRR 1247
+++ G +Y D P + S WD +++ W + +++ + TI S+R T RR
Sbjct: 356 SWSQGSSEYLDEPMEFRSNSFSSWDDSSESYWKKETIKDTD---TILKTTGYSDRSTARR 412
Query: 1248 EVESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFG 1427
+ + + EA++KF KAISSDM+FGR+ ++YE R+RL++L DLF
Sbjct: 413 KPDYEPVE-NTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERLSASSSISSADLF- 470
Query: 1428 DMDGAHGAGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
D AGS +L +VLPTA D+AQFKQGV+SVAGK++V ANGVM S+QDRYGS
Sbjct: 471 DEQRKQTAGSYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS 524
>ref|XP_848847.1| PREDICTED: similar to ADP-ribosylation factor GTPase activating
protein 3 isoform 2 [Canis familiaris].
Length = 517
Score = 437 bits (1123), Expect = e-122
Identities = 246/529 (46%), Positives = 332/529 (62%), Gaps = 13/529 (2%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I ++F+RLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILSIFRRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNANA++FF QHGC ND N KYNSRAAQ+YRE+I+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAWSAPATDLS----ETQQ 554
A +HGTDLW+D+ P +P K+ DFF+ H P W++ ++S +
Sbjct: 123 QATRKHGTDLWLDS-CVVPPLTPPPKEEDFFASHVSPEVSGTGWASAQPEVSSLPPRNVE 181
Query: 555 PAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P+ G PE GP+++ L KA+ E+ +S+I QKV
Sbjct: 182 TTPANNEGG---PEQGPSVEGLNAPTKAASEV-SSIIKKKPNQAKRGLGAKKGSLGAQKV 237
Query: 735 SSQSFSEIERQAQVAEKLR-XXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNL 911
++ F+EIE+QAQ +K++ S+V+S+RLAY++L+I KK+EK N+
Sbjct: 238 TNTCFNEIEKQAQAVDKMKEQEDRLARAAPKEESIVSSLRLAYKDLEIQMKKDEK--VNM 295
Query: 912 EGKKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASG 1088
GKK+ ++ERLGMG +MQ IEQETP+ AK + D DD ++ +
Sbjct: 296 SGKKKIESERLGMGFGNCRSGISHSVTSDMQTIEQETPIVAKPRKKYSDDSDD--SYFTS 353
Query: 1089 PPKYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESR 1262
+Y D P + S WD +++ W + +++ + TI S+R T RR+ +
Sbjct: 354 SSRYLDEPMEFRSNSFSSWDDSSESYWKKETIKDTD---TILKTTGYSDRSTARRKPDYE 410
Query: 1263 SSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGA 1442
+ EA++KF KAISSDM+FGR+ ++YE R+RL++L DLF D
Sbjct: 411 PVE-NTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERLSASSSISSADLF-DEQRK 468
Query: 1443 HGAGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
AGS +L +VLPTA D+AQFKQGV+SVAGK++V ANGVM S+QDRYGS
Sbjct: 469 QTAGSYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS 517
>ref|XP_857414.1| PREDICTED: similar to ADP-ribosylation factor GTPase activating
protein 3 isoform 5 [Canis familiaris].
Length = 528
Score = 432 bits (1112), Expect = e-121
Identities = 248/538 (46%), Positives = 331/538 (61%), Gaps = 22/538 (4%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I ++F+RLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILSIFRRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNANA++FF QHGC ND N KYNSRAAQ+YRE+I+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAWSAPATDLS----ETQQ 554
A +HGTDLW+D+ P +P K+ DFF+ H P W++ ++S +
Sbjct: 123 QATRKHGTDLWLDS-CVVPPLTPPPKEEDFFASHVSPEVSGTGWASAQPEVSSLPPRNVE 181
Query: 555 PAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P+ G PE GP+++ L KA+ E+ +S+I QKV
Sbjct: 182 TTPANNEGG---PEQGPSVEGLNAPTKAASEV-SSIIKKKPNQAKRGLGAKKGSLGAQKV 237
Query: 735 SSQSFSEIERQAQVAEKLR-XXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNL 911
++ F+EIE+QAQ +K++ S+V+S+RLAY++L+I KK+EK N+
Sbjct: 238 TNTCFNEIEKQAQAVDKMKEQEDRLARAAPKEESIVSSLRLAYKDLEIQMKKDEK--VNM 295
Query: 912 EGKKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASG 1088
GKK+ ++ERLGMG +MQ IEQETP+ AK + D DD +S
Sbjct: 296 SGKKKIESERLGMGFGNCRSGISHSVTSDMQTIEQETPIVAKPRKKYSDDSDDSYFTSSS 355
Query: 1089 ---------PPKYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERV 1235
KY D P + S WD +++ W + +++ + TI S+R
Sbjct: 356 RLFPWSDAKSAKYLDEPMEFRSNSFSSWDDSSESYWKKETIKDTD---TILKTTGYSDRS 412
Query: 1236 TNRREVESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXX 1415
T RR+ + + EA++KF KAISSDM+FGR+ ++YE R+RL++L
Sbjct: 413 TARRKPDYEPVE-NTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERLSASSSISSA 471
Query: 1416 DLFGDMDGAHGAGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
DLF D AGS +L +VLPTA D+AQFKQGV+SVAGK++V ANGVM S+QDRYGS
Sbjct: 472 DLF-DEQRKQTAGSYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS 528
>ref|XP_857331.1| PREDICTED: similar to ADP-ribosylation factor GTPase-activating
protein 3 (ARF GAP 3) isoform 3 [Canis familiaris].
Length = 517
Score = 430 bits (1105), Expect = e-120
Identities = 247/534 (46%), Positives = 332/534 (62%), Gaps = 18/534 (3%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I ++F+RLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILSIFRRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNANA++FF QHGC ND N KYNSRAAQ+YRE+I+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAWSAPATDLS----ETQQ 554
A +HGTDLW+D+ P +P K+ DFF+ H P W++ ++S +
Sbjct: 123 QATRKHGTDLWLDS-CVVPPLTPPPKEEDFFASHVSPEVSGTGWASAQPEVSSLPPRNVE 181
Query: 555 PAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P+ G PE GP+++ L KA+ E+ +S+I QKV
Sbjct: 182 TTPANNEGG---PEQGPSVEGLNAPTKAASEV-SSIIKKKPNQAKRGLGAKKGSLGAQKV 237
Query: 735 SSQSFSEIERQAQVAEKLR-XXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNL 911
++ F+EIE+QAQ +K++ S+V+S+RLAY++L+I KK+EK N+
Sbjct: 238 TNTCFNEIEKQAQAVDKMKEQEDRLARAAPKEESIVSSLRLAYKDLEIQMKKDEK--VNM 295
Query: 912 EGKKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASG 1088
GKK+ ++ERLGMG +MQ IEQETP+ AK + D DD +S
Sbjct: 296 SGKKKIESERLGMGFGNCRSGISHSVTSDMQTIEQETPIVAKPRKKYSDDSDDSYFTSSS 355
Query: 1089 -----PPKYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERVTNRR 1247
P +++ N F S WD +++ W + +++ + TI S+R T RR
Sbjct: 356 SCYYYPMEFRSNSF-------SSWDDSSESYWKKETIKDTD---TILKTTGYSDRSTARR 405
Query: 1248 EVESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFG 1427
+ + + EA++KF KAISSDM+FGR+ ++YE R+RL++L DLF
Sbjct: 406 KPDYEPVE-NTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERLSASSSISSADLF- 463
Query: 1428 DMDGAHGAGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
D AGS +L +VLPTA D+AQFKQGV+SVAGK++V ANGVM S+QDRYGS
Sbjct: 464 DEQRKQTAGSYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS 517
>ref|XP_531706.2| PREDICTED: similar to ADP-ribosylation factor GTPase activating
protein 3 isoform 1 [Canis familiaris].
Length = 542
Score = 426 bits (1095), Expect = e-119
Identities = 241/524 (45%), Positives = 327/524 (62%), Gaps = 13/524 (2%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I ++F+RLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILSIFRRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNANA++FF QHGC ND N KYNSRAAQ+YRE+I+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAWSAPATDLS----ETQQ 554
A +HGTDLW+D+ P +P K+ DFF+ H P W++ ++S +
Sbjct: 123 QATRKHGTDLWLDS-CVVPPLTPPPKEEDFFASHVSPEVSGTGWASAQPEVSSLPPRNVE 181
Query: 555 PAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P+ G PE GP+++ L KA+ E+ +S+I QKV
Sbjct: 182 TTPANNEGG---PEQGPSVEGLNAPTKAASEV-SSIIKKKPNQAKRGLGAKKGSLGAQKV 237
Query: 735 SSQSFSEIERQAQVAEKLR-XXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNL 911
++ F+EIE+QAQ +K++ S+V+S+RLAY++L+I KK+EK N+
Sbjct: 238 TNTCFNEIEKQAQAVDKMKEQEDRLARAAPKEESIVSSLRLAYKDLEIQMKKDEK--VNM 295
Query: 912 EGKKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASG 1088
GKK+ ++ERLGMG +MQ IEQETP+ AK + D DD ++ +
Sbjct: 296 SGKKKIESERLGMGFGNCRSGISHSVTSDMQTIEQETPIVAKPRKKYSDDSDD--SYFTS 353
Query: 1089 PPKYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESR 1262
+Y D P + S WD +++ W + +++ + TI S+R T RR+ +
Sbjct: 354 SSRYLDEPMEFRSNSFSSWDDSSESYWKKETIKDTD---TILKTTGYSDRSTARRKPDYE 410
Query: 1263 SSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGA 1442
+ EA++KF KAISSDM+FGR+ ++YE R+RL++L DLF D
Sbjct: 411 PVE-NTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERLSASSSISSADLF-DEQRK 468
Query: 1443 HGAGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQ 1571
AGS +L +VLPTA D+AQFKQGV+SVAGK++V ANGVM S+Q
Sbjct: 469 QTAGSYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQ 512
>ref|XP_861308.1| PREDICTED: similar to zinc finger protein 289, ID1 regulated
isoform 5 [Canis familiaris].
Length = 183
Score = 329 bits (844), Expect = 8e-90
Identities = 157/165 (95%), Positives = 161/165 (97%), Gaps = 3/165 (1%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEPSKTEIQTLFKRLR IPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPSKTEIQTLFKRLRGIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA+DANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTASDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQ---PPA 515
LGSAALARHGTDLWIDN+SSAPSHSPEKKDSDFF+EHTQ PP+
Sbjct: 121 LGSAALARHGTDLWIDNVSSAPSHSPEKKDSDFFTEHTQNREPPS 165
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 122,919,706
Number of extensions: 3833965
Number of successful extensions: 17514
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 17373
Number of HSP's successfully gapped: 42
Length of query: 929
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 817
Effective length of database: 15,140,872
Effective search space: 12370092424
Effective search space used: 12370092424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008478
(2788 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122862.1| PREDICTED: ADP-ribosylation factor GTPase-ac... 905 0.0
Alignment gi|XP_003361175.1| PREDICTED: ADP-ribosylation factor GTPase-ac... 895 0.0
Alignment gi|XP_003353922.1| PREDICTED: ADP-ribosylation factor GTPase-ac... 666 0.0
Alignment gi|XP_003126029.2| PREDICTED: ADP-ribosylation factor GTPase-ac... 287 2e-77
Alignment gi|XP_003355371.1| PREDICTED: ADP-ribosylation factor GTPase-ac... 167 4e-41
Alignment gi|XP_003355370.1| PREDICTED: ADP-ribosylation factor GTPase-ac... 93 7e-19
Alignment gi|NP_001121936.1| stromal membrane-associated protein 2 [Sus s... 90 6e-18
Alignment gi|XP_003121323.2| PREDICTED: stromal membrane-associated prote... 86 1e-16
Alignment gi|XP_003358807.1| PREDICTED: arf-GAP with coiled-coil, ANK rep... 80 8e-15
Alignment gi|XP_003127544.2| PREDICTED: arf-GAP with coiled-coil, ANK rep... 79 1e-14
>ref|XP_003122862.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2
isoform 1 [Sus scrofa].
Length = 520
Score = 905 bits (2338), Expect = 0.0
Identities = 465/520 (89%), Positives = 465/520 (89%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA
Sbjct: 121 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 180
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSF 749
ESSGLAQPEHGPNMDLLGTSPKASLELKTSLI QKVSSQSF
Sbjct: 181 ESSGLAQPEHGPNMDLLGTSPKASLELKTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSF 240
Query: 750 SEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 929
SEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE
Sbjct: 241 SEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 300
Query: 930 QAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 1109
QAERLGMG EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN
Sbjct: 301 QAERLGMGLVSRSSVSHSVLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 360
Query: 1110 PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA 1289
PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA
Sbjct: 361 PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA 420
Query: 1290 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLG 1469
RQKFAGAKAISSDMFFGREVDSEYEARSRLQQL DLFGDMDGAHGAGSVSLG
Sbjct: 421 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLSGSSAISSSDLFGDMDGAHGAGSVSLG 480
Query: 1470 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 520
>ref|XP_003361175.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like
[Sus scrofa].
Length = 545
Score = 895 bits (2313), Expect = 0.0
Identities = 460/519 (88%), Positives = 461/519 (88%)
Frame = +3
Query: 33 AAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLS 212
AAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLS
Sbjct: 27 AAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLS 86
Query: 213 FIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQL 392
FIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQL
Sbjct: 87 FIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQL 146
Query: 393 GSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSAE 572
GSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSAE
Sbjct: 147 GSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSAE 206
Query: 573 SSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSFS 752
SSGLAQPEHGPNMDLLGTSP + ELKTSLI QKVSSQSFS
Sbjct: 207 SSGLAQPEHGPNMDLLGTSPLSHTELKTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSFS 266
Query: 753 EIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQ 932
EIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQ
Sbjct: 267 EIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQ 326
Query: 933 AERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNP 1112
AERLGMG EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNP
Sbjct: 327 AERLGMGLVSRSSVSHSVLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNP 386
Query: 1113 FSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEAR 1292
FSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEAR
Sbjct: 387 FSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEAR 446
Query: 1293 QKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLGN 1472
QKFAGAKAISSDMFFGREVDSEYEARSRLQQL DLFGDMDGAHGAGSVSLGN
Sbjct: 447 QKFAGAKAISSDMFFGREVDSEYEARSRLQQLSGSSAISSSDLFGDMDGAHGAGSVSLGN 506
Query: 1473 VLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
VLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 507 VLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 545
>ref|XP_003353922.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2
isoform 2 [Sus scrofa].
Length = 414
Score = 666 bits (1718), Expect = 0.0
Identities = 359/441 (81%), Positives = 359/441 (81%)
Frame = +3
Query: 267 MQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMS 446
MQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHGTD
Sbjct: 1 MQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHGTD------- 53
Query: 447 SAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSAESSGLAQPEHGPNMDLLGT 626
PPAWSAPATDLSETQQPAPSAESSGLAQPEHGPNMDLLGT
Sbjct: 54 --------------------PPAWSAPATDLSETQQPAPSAESSGLAQPEHGPNMDLLGT 93
Query: 627 SPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSFSEIERQAQVAEKLRXXXXX 806
SPKASLELKTSLI QKVSSQSFSEIERQAQVAEKLR
Sbjct: 94 SPKASLELKTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSFSEIERQAQVAEKLREQQAA 153
Query: 807 XXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMGXXXXXXXXXXX 986
SMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMG
Sbjct: 154 DAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMGLVSRSSVSHSV 213
Query: 987 XXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWDADAAWG 1166
EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWDADAAWG
Sbjct: 214 LSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWDADAAWG 273
Query: 1167 MDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEARQKFAGAKAISSDMFFGRE 1346
MDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEARQKFAGAKAISSDMFFGRE
Sbjct: 274 MDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEARQKFAGAKAISSDMFFGRE 333
Query: 1347 VDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLGNVLPTADIAQFKQGVKSVA 1526
VDSEYEARSRLQQL DLFGDMDGAHGAGSVSLGNVLPTADIAQFKQGVKSVA
Sbjct: 334 VDSEYEARSRLQQLSGSSAISSSDLFGDMDGAHGAGSVSLGNVLPTADIAQFKQGVKSVA 393
Query: 1527 GKMAVLANGVMNSLQDRYGSY 1589
GKMAVLANGVMNSLQDRYGSY
Sbjct: 394 GKMAVLANGVMNSLQDRYGSY 414
>ref|XP_003126029.2| PREDICTED: ADP-ribosylation factor GTPase-activating protein 3-like
isoform 2 [Sus scrofa].
Length = 439
Score = 287 bits (734), Expect = 2e-77
Identities = 183/445 (41%), Positives = 258/445 (57%), Gaps = 14/445 (3%)
Frame = +3
Query: 294 TAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMSSAPSHSPEK 473
++FF QHGC ND N KYNSRAAQ+YRE+I+ L S A +HGTDLW+D+ PS SP
Sbjct: 10 SSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPS-SPPP 68
Query: 474 KDSDFFSEHTQP----PAW-SAPATDLSETQQ--PAPSAESSGLAQPEHGPNMDLLGTSP 632
K+ DFF+ H P P W SAP S T + P A S G A E GP+++ L
Sbjct: 69 KEEDFFASHASPEGSVPGWASAPPEPSSLTLRNVDTPPANSEGGA--EQGPSVEGLNVPT 126
Query: 633 KASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSFSEIERQAQVAEKLR-XXXXXX 809
KA+LE+ +S+I QK+++ SF+EIE+QAQ +K++
Sbjct: 127 KAALEV-SSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLA 185
Query: 810 XXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMG-XXXXXXXXXXX 986
S+V+S+RLAY++L+I KKEEK N+ G+K+ ++ERLGMG
Sbjct: 186 RTASKEESIVSSLRLAYKDLEIQMKKEEK--MNMSGQKKVESERLGMGFGNCRSGISHSV 243
Query: 987 XXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWD--ADAA 1160
+MQ IEQETPV AK + D DD ++ + +Y D P L S S WD +D+
Sbjct: 244 TSDMQTIEQETPVVAKPRKKYSDDNDD--SYFTSTSRYFDEPMELRSSSFSSWDDSSDSY 301
Query: 1161 WGMDRMEEKEP--EVTISSIRPISERVTNRREVESRSSGLESSEARQKFAGAKAISSDMF 1334
W + +++ +P + T + RP + R + V+ ++ EA++KF KAISSDM+
Sbjct: 302 WKKETIKDTDPTLKTTGYTDRPAARRKPDHEPVD------DTDEAQKKFGNVKAISSDMY 355
Query: 1335 FGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLGNVLPTA-DIAQFKQG 1511
FGR+ ++YE R+RL++ DLF + AG+ +L +VLPTA D+AQFKQG
Sbjct: 356 FGRQAQADYETRARLERFSASSSISSADLF-EEQRKQTAGNYNLTSVLPTAPDMAQFKQG 414
Query: 1512 VKSVAGKMAVLANGVMNSLQDRYGS 1586
V+SVAGK++V ANGVM S+QDRYGS
Sbjct: 415 VRSVAGKLSVFANGVMTSIQDRYGS 439
>ref|XP_003355371.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 3-like
[Sus scrofa].
Length = 93
Score = 167 bits (422), Expect = 4e-41
Identities = 74/85 (87%), Positives = 81/85 (95%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I T+FKRLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANA 293
RSTELDSNW+WFQLRCMQVGGNA+A
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNASA 87
>ref|XP_003355370.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 3-like
[Sus scrofa].
Length = 146
Score = 93.2 bits (230), Expect = 7e-19
Identities = 41/72 (56%), Positives = 51/72 (70%)
Frame = +3
Query: 294 TAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMSSAPSHSPEK 473
++FF QHGC ND N KYNSRAAQ+YRE+I+ L S A +HGTDLW+D+ PS SP
Sbjct: 35 SSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPS-SPPP 93
Query: 474 KDSDFFSEHTQP 509
K+ DFF+ H P
Sbjct: 94 KEEDFFASHASP 105
>ref|NP_001121936.1| stromal membrane-associated protein 2 [Sus scrofa].
Length = 429
Score = 90.1 bits (222), Expect = 6e-18
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
Q + L NK C DC +K P WAS GVF+CI C+G+HR+LGVH+S ++S LD
Sbjct: 13 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD- 71
Query: 240 NWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKI-------RQLGS 398
W Q++CMQ GN A + + + + R+K R L
Sbjct: 72 QWTQEQIQCMQEMGNGKANRLYEAY-LPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDI 130
Query: 399 AALARHGTDLWIDNMSSAPSHS-----------PEKKDSDFFSEHTQPPAWSAPATDLSE 545
AL + D W AP P+KK+ + P + +AP DL
Sbjct: 131 NALRKEKDDKWKRGSEPAPEKKMEPVVFEKVKMPQKKEDPQLPRKSSPKS-TAPVMDLLG 189
Query: 546 TQQPAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLI 665
P + ++ ++DLL + P S + ++
Sbjct: 190 LDAPVSCSTANNKTSNTLEKDLDLLASVPSPSSSVSRKVV 229
>ref|XP_003121323.2| PREDICTED: stromal membrane-associated protein 1 [Sus scrofa].
Length = 441
Score = 85.5 bits (210), Expect = 1e-16
Identities = 68/233 (29%), Positives = 96/233 (41%), Gaps = 23/233 (9%)
Frame = +3
Query: 36 AEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 215
A+ + Q + +L NK C DC AK P WAS GVF+CI C+G+HR+LGVH+S
Sbjct: 10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 69
Query: 216 IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYR------- 374
++S LD W Q++CMQ GN A + +AN N R Q +
Sbjct: 70 VKSVNLD-QWTPEQIQCMQDMGNTKARLLY--------EANLPENFRRPQTDQAVEFFIR 120
Query: 375 ---EKIRQLGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEH-------------TQ 506
EK + A+A S PE++ + SE T
Sbjct: 121 DKYEKKKYYDKNAIAISNVIKRKKKQQKQRSWRPEQQTRELASEQLSKEDQQLEPKKSTS 180
Query: 507 PPAWSAPATDLSETQQPAPSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLI 665
P + P DL PA + ++G N DL P S L T+++
Sbjct: 181 PKKAAEPTVDLLGLDGPAEAPVTNGNTATVPALNDDLDIFGPMISNPLPTTVM 233
>ref|XP_003358807.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH
domain-containing protein 2 [Sus scrofa].
Length = 555
Score = 79.7 bits (195), Expect = 8e-15
Identities = 58/195 (29%), Positives = 87/195 (44%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
++ +R++ IP N +C DCG +P WASI G+ LCI+CSG+HRSLGVH S +RS LD+
Sbjct: 176 ESALQRVQCIPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDT 235
Query: 240 NWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHG 419
W L+ M GN + AN +EK + + + R
Sbjct: 236 -WEPELLKLMCELGNDVINRVYE-----ANVEKMGVKKPQPGQRQEKEAYIRAKYVERKF 289
Query: 420 TDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSAESSGLAQPEH 599
D + ++SS+P +K S E + P+ + Q + + SG+ Q
Sbjct: 290 VDKY--SISSSPPEQEKKIVSKSSEEKRLSISKLGPSEQVRAFPQSSVKSNDSGIQQSSD 347
Query: 600 GPNMDLLGTSPKASL 644
L T SL
Sbjct: 348 DGRESLPSTVSTNSL 362
>ref|XP_003127544.2| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH
domain-containing protein 3 [Sus scrofa].
Length = 865
Score = 79.3 bits (194), Expect = 1e-14
Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
+++ +R++ + N C DCG +P WASI GV LCI+CSG+HRSLGVH S +RS LDS
Sbjct: 435 ESVLQRVQGVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDS 494
Query: 240 NWNWFQLRCMQVGGNANATAFFR-------QHGCTANDANTKYNSRAAQMYREK--IRQL 392
W L+ M GN+ + TAN + Y EK +R+L
Sbjct: 495 -WEPELLKLMCELGNSTMNQIYEAQCEGLGSRKPTANSPRQDKEAWIKDKYVEKKFVRKL 553
Query: 393 GSAALARHGTDLW 431
SA AR W
Sbjct: 554 PSAP-AREAPRRW 565
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 76,276,227
Number of extensions: 2418225
Number of successful extensions: 11284
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 11070
Number of HSP's successfully gapped: 25
Length of query: 929
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 821
Effective length of database: 8,655,056
Effective search space: 7105800976
Effective search space used: 7105800976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008478
(2788 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076343.2| ADP-ribosylation factor GTPase-activating prote... 833 0.0
Alignment gi|NP_001159496.1| ADP-ribosylation factor GTPase-activating pr... 823 0.0
Alignment gi|NP_079721.2| ADP-ribosylation factor GTPase-activating prote... 434 e-121
Alignment gi|XP_003086028.1| PREDICTED: ADP-ribosylation factor GTPase-ac... 273 7e-73
Alignment gi|NP_001171180.1| ADP-ribosylation factor GTPase-activating pr... 105 2e-22
Alignment gi|NP_001171179.1| ADP-ribosylation factor GTPase-activating pr... 105 2e-22
Alignment gi|NP_001171178.1| ADP-ribosylation factor GTPase-activating pr... 105 2e-22
Alignment gi|NP_001171177.1| ADP-ribosylation factor GTPase-activating pr... 105 2e-22
Alignment gi|NP_665703.2| ADP-ribosylation factor GTPase-activating prote... 105 2e-22
Alignment gi|NP_598477.2| stromal membrane-associated protein 2 [Mus musc... 86 1e-16
>ref|NP_076343.2| ADP-ribosylation factor GTPase-activating protein 2 isoform 2 [Mus
musculus].
Length = 520
Score = 833 bits (2151), Expect = 0.0
Identities = 425/520 (81%), Positives = 446/520 (85%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAA PSKTEIQT+FKRLRAIPTNKACFDCGAK+PSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAASPSKTEIQTIFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNW+W QLRCMQVGGNANATAFFRQHGC ANDANTKY SRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCMANDANTKYTSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAAL RHGTDLWID+M+SAPSHSPEKKDSDFF+EHTQ PAW ATD S TQQPA +
Sbjct: 121 LGSAALTRHGTDLWIDSMNSAPSHSPEKKDSDFFTEHTQAPAWDTAATDPSGTQQPALPS 180
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSF 749
ESS LAQPE GPN DLLGTSP+ASLELK+S+I QKVS+QSF
Sbjct: 181 ESSSLAQPEQGPNTDLLGTSPQASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSNQSF 240
Query: 750 SEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 929
+EIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE
Sbjct: 241 TEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 300
Query: 930 QAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 1109
QAERLGMG EMQ+IEQETP+SAKSSRSQLDLFDDVGTFASGPPKYKDN
Sbjct: 301 QAERLGMGLVSRSSISHSVLSEMQMIEQETPLSAKSSRSQLDLFDDVGTFASGPPKYKDN 360
Query: 1110 PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA 1289
PFSLGE+FGSRWD+DAAWGMDR+EEKEPEVTISSIRPISER +RREVE+RSSGLESSEA
Sbjct: 361 PFSLGETFGSRWDSDAAWGMDRVEEKEPEVTISSIRPISERTASRREVETRSSGLESSEA 420
Query: 1290 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLG 1469
RQKFAGAKAISSDMFFGREVDSEYEARSRLQQL DLFG+MDGAHG G+VSLG
Sbjct: 421 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLSGSSAISSSDLFGNMDGAHGGGTVSLG 480
Query: 1470 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 520
>ref|NP_001159496.1| ADP-ribosylation factor GTPase-activating protein 2 isoform 1 [Mus
musculus].
Length = 534
Score = 823 bits (2126), Expect = 0.0
Identities = 425/534 (79%), Positives = 446/534 (83%), Gaps = 14/534 (2%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAA PSKTEIQT+FKRLRAIPTNKACFDCGAK+PSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAASPSKTEIQTIFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNW+W QLRCMQVGGNANATAFFRQHGC ANDANTKY SRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCMANDANTKYTSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAAL RHGTDLWID+M+SAPSHSPEKKDSDFF+EHTQ PAW ATD S TQQPA +
Sbjct: 121 LGSAALTRHGTDLWIDSMNSAPSHSPEKKDSDFFTEHTQAPAWDTAATDPSGTQQPALPS 180
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLE--------------LKTSLIXXXXXXXXXXXXXX 707
ESS LAQPE GPN DLLGTSP+ASLE LK+S+I
Sbjct: 181 ESSSLAQPEQGPNTDLLGTSPQASLESMYLSAKGPSCTRELKSSIIGKKKPAAAKKGLGA 240
Query: 708 XXXXXXQKVSSQSFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKK 887
QKVS+QSF+EIERQAQVAEKLR SMVASMRLAYQELQIDRKK
Sbjct: 241 KKGLGAQKVSNQSFTEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKK 300
Query: 888 EEKKLQNLEGKKREQAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDD 1067
EEKKLQNLEGKKREQAERLGMG EMQ+IEQETP+SAKSSRSQLDLFDD
Sbjct: 301 EEKKLQNLEGKKREQAERLGMGLVSRSSISHSVLSEMQMIEQETPLSAKSSRSQLDLFDD 360
Query: 1068 VGTFASGPPKYKDNPFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRR 1247
VGTFASGPPKYKDNPFSLGE+FGSRWD+DAAWGMDR+EEKEPEVTISSIRPISER +RR
Sbjct: 361 VGTFASGPPKYKDNPFSLGETFGSRWDSDAAWGMDRVEEKEPEVTISSIRPISERTASRR 420
Query: 1248 EVESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFG 1427
EVE+RSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQL DLFG
Sbjct: 421 EVETRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLSGSSAISSSDLFG 480
Query: 1428 DMDGAHGAGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
+MDGAHG G+VSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 NMDGAHGGGTVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 534
>ref|NP_079721.2| ADP-ribosylation factor GTPase-activating protein 3 [Mus musculus].
Length = 524
Score = 434 bits (1115), Expect = e-121
Identities = 254/534 (47%), Positives = 329/534 (61%), Gaps = 18/534 (3%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I +FKRLR++PTNK CFDCGAKNPSWASI+YGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGN+NA++FF QHGC D N KYNSRAAQ+YREKI+ L +
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCATKDTNAKYNSRAAQLYREKIKTLAT 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQ---PPAWSAPATDLSETQQP---- 557
A RHGTDLW+D+ +AP SP K+ DFF+ H A A A S + P
Sbjct: 123 QATRRHGTDLWLDS-CAAPPVSPPPKEEDFFASHASLEVSGAMQASAQPESASSTPWGLE 181
Query: 558 -APSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P G P GP+++ L T KA+ E+ +S+I QK+
Sbjct: 182 TTPEKHEGG---PGQGPSVEGLNTPGKAAPEV-SSIIKKKPNQAKKGLGAKKGSLGAQKL 237
Query: 735 SSQSFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLE 914
++ SF+EIE+QAQ +K + S+V+S+RLAY++L+I RKK+E+ NL
Sbjct: 238 TNTSFTEIEKQAQAVDKRKEQEDLARGAPKEESIVSSLRLAYKDLEISRKKDER--LNLS 295
Query: 915 GKKREQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRS-QLDLFDDVGTFAS- 1085
G+K+ +AERLGMG +MQ IEQE+P AK R Q D D + +S
Sbjct: 296 GQKKVEAERLGMGFGSCRSGISHSVTSDMQTIEQESPTLAKPRRKYQEDPEDSYFSSSSK 355
Query: 1086 ----GPPKYKDNPFSLGESFGSRWD--ADAAWGMDRMEEKEPEVTISSIRPISERVTNRR 1247
+Y D+P L S S WD AD+ W D + EP + + S+R + RR
Sbjct: 356 WSEQSSSRYFDDPMELRSSSFSSWDDGADSYWKKDSSRDPEPAMRSTG---SSDRPSARR 412
Query: 1248 EVESRSSGLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFG 1427
+ E G + EA++KF KAISSDM+FG + +++E R+RL++L DLF
Sbjct: 413 KPEYEPIG-STDEAQKKFGNVKAISSDMYFGIQAQTDFETRARLERLSTSSSISSADLF- 470
Query: 1428 DMDGAHGAGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
D AG+ +L NVLP A D+AQFKQGV+SVAGK++V ANGVM S+QDRYGS
Sbjct: 471 DEQRKQTAGNYNLSNVLPNAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS 524
>ref|XP_003086028.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 3-like
[Mus musculus].
Length = 389
Score = 273 bits (697), Expect = 7e-73
Identities = 146/300 (48%), Positives = 184/300 (61%), Gaps = 8/300 (2%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I +FKRLR++PTNK CFDCGAKNPSWASI+YGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGN+NA++FF QHGC D N KYNSRAAQ+YREKI+ L +
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCATKDTNAKYNSRAAQLYREKIKTLAT 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQ---PPAWSAPATDLSETQQP---- 557
A RHGTDLW+D+ +AP SP K+ DFF+ H A A A S + P
Sbjct: 123 QATRRHGTDLWLDS-CAAPPVSPPPKEEDFFASHASLEVSGAMQASAQPESASSTPWGLE 181
Query: 558 -APSAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKV 734
P G P GP+++ L T KA+ +S+I QK+
Sbjct: 182 TTPEKHEGG---PGQGPSVEGLNTPGKAAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKL 238
Query: 735 SSQSFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLE 914
++ SF+EIE+QAQ +K + SM ++ R E + +KK N++
Sbjct: 239 TNTSFTEIEKQAQAVDKRKEQEDLARGAPKEESMPSARRKPEYEPIGSTDEAQKKFGNVK 298
Score = 107 bits (266), Expect = 7e-23
Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Frame = +3
Query: 1158 AWGMDRMEEKEPEVTISSIRPISERVTN-RREVESRSSGLESSEARQKFAGAKAISSDMF 1334
A +D+ +E+E ++ P E + + RR+ E G + EA++KF KAISSDM+
Sbjct: 250 AQAVDKRKEQED---LARGAPKEESMPSARRKPEYEPIG-STDEAQKKFGNVKAISSDMY 305
Query: 1335 FGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLGNVLPTA-DIAQFKQG 1511
FG + +++E R+RL++L DLF D AG+ +L NVLP A D+AQFKQG
Sbjct: 306 FGIQAQTDFETRARLERLSTSSSISSADLF-DEQRKQTAGNYNLSNVLPNAPDMAQFKQG 364
Query: 1512 VKSVAGKMAVLANGVMNSLQDRYGS 1586
V+SVAGK++V ANGVM S+QDRYGS
Sbjct: 365 VRSVAGKLSVFANGVMTSIQDRYGS 389
>ref|NP_001171180.1| ADP-ribosylation factor GTPase-activating protein 1 isoform b [Mus
musculus].
Length = 392
Score = 105 bits (261), Expect = 2e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +RA N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFFRQHGCTAND------ANTKYNSRAAQMYREKIRQLGSAAL 407
+L M+ GGNA FR+ T +D KY+SRAA ++R+K+ L
Sbjct: 68 KDIELEKMKAGGNAK----FREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEG-- 121
Query: 408 ARHGTDLWIDNMSSAPSHSPEKKDSDFFSEH 500
W S A + +P + + F+ H
Sbjct: 122 -----KEWSLESSPAQNWTPPQPKTLQFTAH 147
>ref|NP_001171179.1| ADP-ribosylation factor GTPase-activating protein 1 isoform c [Mus
musculus].
Length = 394
Score = 105 bits (261), Expect = 2e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +RA N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFFRQHGCTAND------ANTKYNSRAAQMYREKIRQLGSAAL 407
+L M+ GGNA FR+ T +D KY+SRAA ++R+K+ L
Sbjct: 68 KDIELEKMKAGGNAK----FREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEG-- 121
Query: 408 ARHGTDLWIDNMSSAPSHSPEKKDSDFFSEH 500
W S A + +P + + F+ H
Sbjct: 122 -----KEWSLESSPAQNWTPPQPKTLQFTAH 147
>ref|NP_001171178.1| ADP-ribosylation factor GTPase-activating protein 1 isoform c [Mus
musculus].
Length = 394
Score = 105 bits (261), Expect = 2e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +RA N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFFRQHGCTAND------ANTKYNSRAAQMYREKIRQLGSAAL 407
+L M+ GGNA FR+ T +D KY+SRAA ++R+K+ L
Sbjct: 68 KDIELEKMKAGGNAK----FREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEG-- 121
Query: 408 ARHGTDLWIDNMSSAPSHSPEKKDSDFFSEH 500
W S A + +P + + F+ H
Sbjct: 122 -----KEWSLESSPAQNWTPPQPKTLQFTAH 147
>ref|NP_001171177.1| ADP-ribosylation factor GTPase-activating protein 1 isoform b [Mus
musculus].
Length = 392
Score = 105 bits (261), Expect = 2e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +RA N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFFRQHGCTAND------ANTKYNSRAAQMYREKIRQLGSAAL 407
+L M+ GGNA FR+ T +D KY+SRAA ++R+K+ L
Sbjct: 68 KDIELEKMKAGGNAK----FREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEG-- 121
Query: 408 ARHGTDLWIDNMSSAPSHSPEKKDSDFFSEH 500
W S A + +P + + F+ H
Sbjct: 122 -----KEWSLESSPAQNWTPPQPKTLQFTAH 147
>ref|NP_665703.2| ADP-ribosylation factor GTPase-activating protein 1 isoform a [Mus
musculus].
Length = 414
Score = 105 bits (261), Expect = 2e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +RA N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFFRQHGCTAND------ANTKYNSRAAQMYREKIRQLGSAAL 407
+L M+ GGNA FR+ T +D KY+SRAA ++R+K+ L
Sbjct: 68 KDIELEKMKAGGNAK----FREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEG-- 121
Query: 408 ARHGTDLWIDNMSSAPSHSPEKKDSDFFSEH 500
W S A + +P + + F+ H
Sbjct: 122 -----KEWSLESSPAQNWTPPQPKTLQFTAH 147
>ref|NP_598477.2| stromal membrane-associated protein 2 [Mus musculus].
Length = 428
Score = 86.3 bits (212), Expect = 1e-16
Identities = 60/212 (28%), Positives = 88/212 (41%), Gaps = 18/212 (8%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
Q + L NK C DC +K P WAS GVF+CI C+G+HR+LGVH+S ++S LD
Sbjct: 13 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD- 71
Query: 240 NWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKI-------RQLGS 398
W Q++CMQ GN A + + + + R+K R L
Sbjct: 72 QWTQEQIQCMQEMGNGKANRLYEAY-LPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDI 130
Query: 399 AALARHGTDLWIDNMSSAPSHS-----------PEKKDSDFFSEHTQPPAWSAPATDLSE 545
L + D W AP P+KK+ + P + +AP DL
Sbjct: 131 NVLRKEKDDKWKRGNEPAPEKKMEPVVFEKVKMPQKKEDAQLPRKSSPKS-AAPVMDLLG 189
Query: 546 TQQPAPSAESSGLAQPEHGPNMDLLGTSPKAS 641
P + ++ ++DLL + P S
Sbjct: 190 LDAPVACSIANSKTSNALEKDLDLLASVPSPS 221
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 101,489,283
Number of extensions: 3105497
Number of successful extensions: 13649
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 13564
Number of HSP's successfully gapped: 37
Length of query: 929
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 818
Effective length of database: 12,283,563
Effective search space: 10047954534
Effective search space used: 10047954534
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008478
(2788 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115765.2| ADP-ribosylation factor GTPase-activating prote... 876 0.0
Alignment gi|NP_001229761.1| ADP-ribosylation factor GTPase-activating pr... 811 0.0
Alignment gi|NP_055385.3| ADP-ribosylation factor GTPase-activating prote... 445 e-125
Alignment gi|NP_001135765.1| ADP-ribosylation factor GTPase-activating pr... 360 5e-99
Alignment gi|NP_783202.1| ADP-ribosylation factor GTPase-activating prote... 103 1e-21
Alignment gi|NP_060679.1| ADP-ribosylation factor GTPase-activating prote... 103 1e-21
Alignment gi|NP_073570.1| stromal membrane-associated protein 2 isoform 1... 86 2e-16
Alignment gi|NP_001037770.1| stromal membrane-associated protein 1 isofor... 83 1e-15
Alignment gi|NP_068759.2| stromal membrane-associated protein 1 isoform B... 83 1e-15
Alignment gi|NP_036419.3| arf-GAP with coiled-coil, ANK repeat and PH dom... 79 3e-14
>ref|NP_115765.2| ADP-ribosylation factor GTPase-activating protein 2 isoform 1 [Homo
sapiens].
Length = 521
Score = 876 bits (2263), Expect = 0.0
Identities = 449/521 (86%), Positives = 458/521 (87%), Gaps = 1/521 (0%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEP+KTEIQTLFKRLRA+PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSA-PSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPS 566
LGSAALARHGTDLWIDNMSSA P+HSPEKKDSDFF+EHTQPPAW APAT+ S TQQPAPS
Sbjct: 121 LGSAALARHGTDLWIDNMSSAVPNHSPEKKDSDFFTEHTQPPAWDAPATEPSGTQQPAPS 180
Query: 567 AESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQS 746
ESSGLAQPEHGPN DLLGTSPKASLELK+S+I QKVSSQS
Sbjct: 181 TESSGLAQPEHGPNTDLLGTSPKASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSSQS 240
Query: 747 FSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKR 926
FSEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKR
Sbjct: 241 FSEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKR 300
Query: 927 EQAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKD 1106
EQAERLGMG EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKD
Sbjct: 301 EQAERLGMGLVSRSSVSHSVLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKD 360
Query: 1107 NPFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSE 1286
NPFSLGESFGSRWD DAAWGMDR+EEKEPEVTISSIRPISER TNRREVESRSSGLESSE
Sbjct: 361 NPFSLGESFGSRWDTDAAWGMDRVEEKEPEVTISSIRPISERATNRREVESRSSGLESSE 420
Query: 1287 ARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSL 1466
ARQKFAGAKAISSDMFFGREVD+EYEARSRLQQL DLFGDMDGAHGAGSVSL
Sbjct: 421 ARQKFAGAKAISSDMFFGREVDAEYEARSRLQQLSGSSAISSSDLFGDMDGAHGAGSVSL 480
Query: 1467 GNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
GNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 481 GNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 521
>ref|NP_001229761.1| ADP-ribosylation factor GTPase-activating protein 2 isoform 2 [Homo
sapiens].
Length = 493
Score = 811 bits (2095), Expect = 0.0
Identities = 424/520 (81%), Positives = 431/520 (82%)
Frame = +3
Query: 30 MAAEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 209
MAAEP+KTEIQTLFKRLRA+PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL
Sbjct: 1 MAAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 60
Query: 210 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 389
SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ
Sbjct: 61 SFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQ 120
Query: 390 LGSAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATDLSETQQPAPSA 569
LGSAALARHGTD PPAW APAT+ S TQQPAPS
Sbjct: 121 LGSAALARHGTD---------------------------PPAWDAPATEPSGTQQPAPST 153
Query: 570 ESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQSF 749
ESSGLAQPEHGPN DLLGTSPKASLELK+S+I QKVSSQSF
Sbjct: 154 ESSGLAQPEHGPNTDLLGTSPKASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSSQSF 213
Query: 750 SEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 929
SEIERQAQVAEKLR SMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE
Sbjct: 214 SEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKRE 273
Query: 930 QAERLGMGXXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 1109
QAERLGMG EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN
Sbjct: 274 QAERLGMGLVSRSSVSHSVLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDN 333
Query: 1110 PFSLGESFGSRWDADAAWGMDRMEEKEPEVTISSIRPISERVTNRREVESRSSGLESSEA 1289
PFSLGESFGSRWD DAAWGMDR+EEKEPEVTISSIRPISER TNRREVESRSSGLESSEA
Sbjct: 334 PFSLGESFGSRWDTDAAWGMDRVEEKEPEVTISSIRPISERATNRREVESRSSGLESSEA 393
Query: 1290 RQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHGAGSVSLG 1469
RQKFAGAKAISSDMFFGREVD+EYEARSRLQQL DLFGDMDGAHGAGSVSLG
Sbjct: 394 RQKFAGAKAISSDMFFGREVDAEYEARSRLQQLSGSSAISSSDLFGDMDGAHGAGSVSLG 453
Query: 1470 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 1589
NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY
Sbjct: 454 NVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGSY 493
>ref|NP_055385.3| ADP-ribosylation factor GTPase-activating protein 3 isoform 1 [Homo
sapiens].
Length = 516
Score = 445 bits (1145), Expect = e-125
Identities = 252/527 (47%), Positives = 332/527 (62%), Gaps = 11/527 (2%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I T+FKRLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNA+A++FF QHGC+ ND N KYNSRAAQ+YREKI+ L S
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLAS 122
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQP----PAW-SAPATDLSETQQPAP 563
A +HGTDLW+D+ P SP K+ DFF+ H P AW SA A S T +P
Sbjct: 123 QATRKHGTDLWLDS-CVVPPLSPPPKEEDFFASHVSPEVSDTAWASAIAEPSSLTSRPVE 181
Query: 564 SAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQ 743
+ + E GP+++ L KA+LE+ +S+I QK+++
Sbjct: 182 TTLENNEGGQEQGPSVEGLNVPTKATLEV-SSIIKKKPNQAKKGLGAKKGSLGAQKLANT 240
Query: 744 SFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKK 923
F+EIE+QAQ A+K++ S+V+S+RLAY++L+I KK+EK N+ GKK
Sbjct: 241 CFNEIEKQAQAADKMKEQEDLAKVVSKEESIVSSLRLAYKDLEIQMKKDEK--MNISGKK 298
Query: 924 REQAERLGMG-XXXXXXXXXXXXXEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKY 1100
++RLGMG +MQ IEQE+P+ AK + D DD ++ + Y
Sbjct: 299 NVDSDRLGMGFGNCRSVISHSVTSDMQTIEQESPIMAKPRKKYNDDSDD--SYFTSSSSY 356
Query: 1101 KDNPFSLGESFGSRWD--ADAAWGMDRMEEKEP--EVTISSIRPISERVTNRREVESRSS 1268
D P L S S WD +D+ W + ++ E + T S RP + R + VE+
Sbjct: 357 FDEPVELRSSSFSSWDDSSDSYWKKETSKDTETVLKTTGYSDRPTARRKPDYEPVEN--- 413
Query: 1269 GLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHG 1448
+ EA++KF KAISSDM+FGR+ ++YE R+RL++L DLF +
Sbjct: 414 ---TDEAQKKFGNVKAISSDMYFGRQSQADYETRARLERLSASSSISSADLF-EEPRKQP 469
Query: 1449 AGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
AG+ SL +VLP A D+AQFKQGV+SVAGK++V ANGV+ S+QDRYGS
Sbjct: 470 AGNYSLSSVLPNAPDMAQFKQGVRSVAGKLSVFANGVVTSIQDRYGS 516
>ref|NP_001135765.1| ADP-ribosylation factor GTPase-activating protein 3 isoform 2 [Homo
sapiens].
Length = 472
Score = 360 bits (923), Expect = 5e-99
Identities = 223/527 (42%), Positives = 297/527 (56%), Gaps = 11/527 (2%)
Frame = +3
Query: 39 EPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFI 218
+PSK +I T+FKRLR++PTNK CFDCGAKNPSWASITYGVFLCIDCSG HRSLGVHLSFI
Sbjct: 3 DPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFI 62
Query: 219 RSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGS 398
RSTELDSNW+WFQLRCMQVGGNA+A
Sbjct: 63 RSTELDSNWSWFQLRCMQVGGNASA----------------------------------- 87
Query: 399 AALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPP----AW-SAPATDLSETQQPAP 563
LW+D+ P SP K+ DFF+ H P AW SA A S T +P
Sbjct: 88 ---------LWLDSCV-VPPLSPPPKEEDFFASHVSPEVSDTAWASAIAEPSSLTSRPVE 137
Query: 564 SAESSGLAQPEHGPNMDLLGTSPKASLELKTSLIXXXXXXXXXXXXXXXXXXXXQKVSSQ 743
+ + E GP+++ L KA+LE+ +S+I QK+++
Sbjct: 138 TTLENNEGGQEQGPSVEGLNVPTKATLEV-SSIIKKKPNQAKKGLGAKKGSLGAQKLANT 196
Query: 744 SFSEIERQAQVAEKLRXXXXXXXXXXXXXSMVASMRLAYQELQIDRKKEEKKLQNLEGKK 923
F+EIE+QAQ A+K++ S+V+S+RLAY++L+I KK+EK N+ GKK
Sbjct: 197 CFNEIEKQAQAADKMKEQEDLAKVVSKEESIVSSLRLAYKDLEIQMKKDEK--MNISGKK 254
Query: 924 REQAERLGMGXXXXXXXXXXXXX-EMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKY 1100
++RLGMG +MQ IEQE+P+ AK + D DD ++ + Y
Sbjct: 255 NVDSDRLGMGFGNCRSVISHSVTSDMQTIEQESPIMAKPRKKYNDDSDD--SYFTSSSSY 312
Query: 1101 KDNPFSLGESFGSRWD--ADAAWGMDRMEEKEP--EVTISSIRPISERVTNRREVESRSS 1268
D P L S S WD +D+ W + ++ E + T S RP + R + VE+
Sbjct: 313 FDEPVELRSSSFSSWDDSSDSYWKKETSKDTETVLKTTGYSDRPTARRKPDYEPVEN--- 369
Query: 1269 GLESSEARQKFAGAKAISSDMFFGREVDSEYEARSRLQQLXXXXXXXXXDLFGDMDGAHG 1448
+ EA++KF KAISSDM+FGR+ ++YE R+RL++L DLF +
Sbjct: 370 ---TDEAQKKFGNVKAISSDMYFGRQSQADYETRARLERLSASSSISSADLFEE-PRKQP 425
Query: 1449 AGSVSLGNVLPTA-DIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS 1586
AG+ SL +VLP A D+AQFKQGV+SVAGK++V ANGV+ S+QDRYGS
Sbjct: 426 AGNYSLSSVLPNAPDMAQFKQGVRSVAGKLSVFANGVVTSIQDRYGS 472
>ref|NP_783202.1| ADP-ribosylation factor GTPase-activating protein 1 isoform b [Homo
sapiens].
Length = 414
Score = 103 bits (256), Expect = 1e-21
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +R N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFF--RQHGCTANDANTKYNSRAAQMYREKI 383
+L M+ GGNA F ++ KYNSRAA ++R+K+
Sbjct: 68 KDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 115
>ref|NP_060679.1| ADP-ribosylation factor GTPase-activating protein 1 isoform a [Homo
sapiens].
Length = 406
Score = 103 bits (256), Expect = 1e-21
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Frame = +3
Query: 66 LFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 245
+ K +R N CF+CGA NP W S+TYG+++C++CSG HR LGVHLSF+RS +D W
Sbjct: 9 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 67
Query: 246 NWFQLRCMQVGGNANATAFF--RQHGCTANDANTKYNSRAAQMYREKI 383
+L M+ GGNA F ++ KYNSRAA ++R+K+
Sbjct: 68 KDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 115
>ref|NP_073570.1| stromal membrane-associated protein 2 isoform 1 [Homo sapiens].
Length = 429
Score = 85.5 bits (210), Expect = 2e-16
Identities = 59/212 (27%), Positives = 87/212 (41%), Gaps = 18/212 (8%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
Q + L NK C DC +K P WAS GVF+CI C+G+HR+LGVH+S ++S LD
Sbjct: 13 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD- 71
Query: 240 NWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKI-------RQLGS 398
W Q++CMQ GN A + + + + R+K R L
Sbjct: 72 QWTQEQIQCMQEMGNGKANRLYEAY-LPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDI 130
Query: 399 AALARHGTDLWIDNMSSAPSHS-----------PEKKDSDFFSEHTQPPAWSAPATDLSE 545
A + D W P P+KK+ + P + +AP DL
Sbjct: 131 NAFRKEKDDKWKRGSEPVPEKKLEPVVFEKVKMPQKKEDPQLPRKSSPKS-TAPVMDLLG 189
Query: 546 TQQPAPSAESSGLAQPEHGPNMDLLGTSPKAS 641
P + ++ ++DLL + P S
Sbjct: 190 LDAPVACSIANSKTSNTLEKDLDLLASVPSPS 221
>ref|NP_001037770.1| stromal membrane-associated protein 1 isoform A [Homo sapiens].
Length = 467
Score = 83.2 bits (204), Expect = 1e-15
Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Frame = +3
Query: 36 AEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 215
A+ + Q + +L NK C DC AK P WAS GVF+CI C+G+HR+LGVH+S
Sbjct: 10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 69
Query: 216 IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYR------- 374
++S LD W Q++CMQ GN A + +AN N R Q +
Sbjct: 70 VKSVNLD-QWTAEQIQCMQDMGNTKARLLY--------EANLPENFRRPQTDQAVEFFIR 120
Query: 375 ---EKIRQLGSAALA---RHGTDLWIDNMSSAPS------------HSPEKKDSDFFSEH 500
EK + A+A +D + + S+PS +KK+ +
Sbjct: 121 DKYEKKKYYDKNAIAITNISSSDAPLQPLVSSPSLQAAVDKNKLEKEKEKKKEEKKREKE 180
Query: 501 TQPPAWSAPATDL-SETQQPAPSAESSGLAQPEHGPNMDLLG 623
+ PA A L + QQ P +S E P +DLLG
Sbjct: 181 PEKPAKPLTAEKLQKKDQQLEPKKSTSPKKAAE--PTVDLLG 220
>ref|NP_068759.2| stromal membrane-associated protein 1 isoform B [Homo sapiens].
Length = 440
Score = 83.2 bits (204), Expect = 1e-15
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 3/199 (1%)
Frame = +3
Query: 36 AEPSKTEIQTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 215
A+ + Q + +L NK C DC AK P WAS GVF+CI C+G+HR+LGVH+S
Sbjct: 10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 69
Query: 216 IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLG 395
++S LD W Q++CMQ GN A + +AN N R Q + +
Sbjct: 70 VKSVNLD-QWTAEQIQCMQDMGNTKARLLY--------EANLPENFRRPQ----TDQAVE 116
Query: 396 SAALARHGTDLWIDNMSSAPSHSPEKKDSDFFSEHTQPPAWSAPATD---LSETQQPAPS 566
++ + D + A ++ ++K + +P + P T + QQ P
Sbjct: 117 FFIRDKYEKKKYYDKNAIAITNKEKEKKKEEKKREKEPEKPAKPLTAEKLQKKDQQLEPK 176
Query: 567 AESSGLAQPEHGPNMDLLG 623
+S E P +DLLG
Sbjct: 177 KSTSPKKAAE--PTVDLLG 193
>ref|NP_036419.3| arf-GAP with coiled-coil, ANK repeat and PH domain-containing
protein 2 [Homo sapiens].
Length = 778
Score = 78.6 bits (192), Expect = 3e-14
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +3
Query: 60 QTLFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS 239
++ +R++ IP N +C DCG +P WASI G+ LCI+CSG+HRSLGVH S +RS LD+
Sbjct: 399 ESALQRVQCIPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDT 458
Query: 240 NWNWFQLRCMQVGGN 284
W L+ M GN
Sbjct: 459 -WEPELLKLMCELGN 472
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 120,408,264
Number of extensions: 3753599
Number of successful extensions: 16843
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 16732
Number of HSP's successfully gapped: 48
Length of query: 929
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 817
Effective length of database: 14,605,196
Effective search space: 11932445132
Effective search space used: 11932445132
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008478
(2788 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2377 0.0
gb|GL893675.2| Sus scrofa unplaced genomic scaffold ChrUScaf1560 1727 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 2377 bits (1199), Expect = 0.0
Identities = 1214/1219 (99%)
Strand = Plus / Plus
Query: 1570 aggatcgctatggttcctactgatccagggtcatggctcagacgtatggtgttgacagca 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623564 aggatcgctatggttcctactgatccagggtcatggctcagacgtatggtgttgacagca 16623623
Query: 1630 gcaaaaacctcatgattcccaggcctgggatgcttgcctcgtggaagctggggaggaatg 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623624 gcaaaaacctcatgattcccaggcctgggatgcttgcctcgtggaagctggggaggaatg 16623683
Query: 1690 gttcttttttacatgtggtgtgtgagtggggtggcctttgaggatctcgggtgagggatg 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623684 gttcttttttacatgtggtgtgtgagtggggtggcctttgaggatctcgggtgagggatg 16623743
Query: 1750 ggcgggtaccagcccctgacctctgcctggagactgagcccttattctcctccctcacac 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623744 ggcgggtaccagcccctgacctctgcctggagactgagcccttattctcctccctcacac 16623803
Query: 1810 ctccacccctgtgtgctaggttctcgttcttccactcctgccccaaagctgctgctcacc 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623804 ctccacccctgtgtgctaggttctcgttcttccactcctgccccaaagctgctgctcacc 16623863
Query: 1870 tgtcctgccgcgctgggagtgaggggagggagtcccctcaggatggctgattctgggtct 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623864 tgtcctgccgcgctgggagtgaggggagggagtcccctcaggatggctgattctgggtct 16623923
Query: 1930 agctcttccccaaattggggcagtaaaaagagtaaggctttttgctggctctaggatcct 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623924 agctcttccccaaattggggcagtaaaaagagtaaggctttttgctggctctaggatcct 16623983
Query: 1990 tccaggccgtctgggggtttggcccccgtcctctgaaaccagcagggaggtctagaaagt 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623984 tccaggccgtctgggggtttggcccccgtcctctgaaaccagcagggaggtctagaaagt 16624043
Query: 2050 tctgctgcacaccggcccctgggggaggcaggccctggacttgctgctgccgttgctgct 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624044 tctgctgcacaccggcccctgggggaggcaggccctggacttgctgctgccgttgctgct 16624103
Query: 2110 ccgggagaggacaggggaggggaaggaccttcgtctgggcctcactaagggctagaacct 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624104 ccgggagaggacaggggaggggaaggaccttcgtctgggcctcactaagggctagaacct 16624163
Query: 2170 tcacctggtacctaacgggatcagactggaggcccaagtggtctcttgctgtcccacggc 2229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624164 tcacctggtacctaacgggatcagactggaggcccaagtggtctcttgctgtcccacggc 16624223
Query: 2230 ccctttttacagtgatcacctggaggggtctctctccttctgggtgtctctgagtccccc 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16624224 ccctttttacagtgatcacctggaggggtctctctccttctgggtgtctctgagtcctcc 16624283
Query: 2290 tataccatccatcgtagaccacagaaccctctgtcccctcctgagcctctgtcccttctc 2349
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624284 tatactatccatcgtggaccacagaaccctctgtcccctcctgagcctctgtcccttctc 16624343
Query: 2350 cccctgcttggtggccatgaaaggtctcatgtgccccatactctgctctggatgctgtga 2409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624344 cccctgcttggtggccatgaaaggtctcatgtgccccatactctgctctggatgctgtga 16624403
Query: 2410 gcataatgctggctcaggaagagaggatgtgagggacagaaacaggctcccggggctcac 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624404 gcataatgctggctcaggaagagaggatgtgagggacagaaacaggctcccggggctcac 16624463
Query: 2470 ctttcttcctcggcatcatcttggttttagggggccctggacagcacccaacccgagagc 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624464 ctttcttcctcggcatcatcttggttttagggggccctggacagcacccaacccgagagc 16624523
Query: 2530 ctggggcgcctacagagctgcaggtcttaccccccaggccacgcactgtgccatccttgg 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624524 ctggggcgcctacagagctgcaggtcttaccccccaggccacgcactgtgccatccttgg 16624583
Query: 2590 tgccatcttccctgccgtgccggcagcctggacccgccccacccctgttgggctgaggat 2649
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 16624584 tgccatcttccctgccgtgccggcagcctggacccaccccacccctggtgggctgaggat 16624643
Query: 2650 tgggctcccaagcagcacagaccactgtccccaccaccctctcccctgaagggatgtgac 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624644 tgggctcccaagcagcacagaccactgtccccaccaccctctcccctgaagggatgtgac 16624703
Query: 2710 tttctttctggactgtttgtattgaaacaaagtagtgtcaaataaagccctgatggggcc 2769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16624704 tttctttctggactgtttgtattgaaacaaagtagtgtcaaataaagccctgatggggcc 16624763
Query: 2770 ctgggcctctgttggtctg 2788
|||||||||||||||||||
Sbjct: 16624764 ctgggcctctgttggtctg 16624782
Score = 276 bits (139), Expect = 6e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 698 gctgggtgccaagaaaggcctaggggcccagaaggtgagcagccagagtttcagtgagat 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16618567 gctgggtgccaagaaaggcctaggggcccagaaggtgagcagccagagtttcagtgagat 16618626
Query: 758 tgagcggcaggcacaggtagccgagaagctccgtgagcagcaggcagctgatgccaagaa 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16618627 tgagcggcaggcacaggtagccgagaagctccgtgagcagcaggcagctgatgccaagaa 16618686
Query: 818 gcaggctgaggagtccatg 836
|||||||||||||||||||
Sbjct: 16618687 gcaggctgaggagtccatg 16618705
Score = 270 bits (136), Expect = 4e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1097 gtacaaggacaaccccttttccctgggggagagttttggttcccgctgggatgcagatgc 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16621250 gtacaaggacaaccccttttccctgggggagagttttggttcccgctgggatgcagatgc 16621309
Query: 1157 tgcctggggtatggacaggatggaggagaaggagccagaagtgaccatctcaagcatccg 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16621310 tgcctggggtatggacaggatggaggagaaggagccagaagtgaccatctcaagcatccg 16621369
Query: 1217 gcccatttcagaaagg 1232
||||||||||||||||
Sbjct: 16621370 gcccatttcagaaagg 16621385
Score = 266 bits (134), Expect = 6e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 966 agctctgtttcccactcggtgctgtctgagatgcaggtgatcgagcaggaaaccccagtg 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16621040 agctctgtttcccactcggtgctgtctgagatgcaggtgatcgagcaggaaaccccagtg 16621099
Query: 1026 agtgcaaaatcctcccgctcgcagctggacttgttcgacgatgttggtactttcgcctct 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16621100 agtgcaaaatcctcccgctcgcagctggacttgttcgacgatgttggtactttcgcctct 16621159
Query: 1086 ggacccccaaagta 1099
||||||||||||||
Sbjct: 16621160 ggacccccaaagta 16621173
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 293 gacagctttcttccgccaacatggatgcacagccaatgatgccaacaccaaatataatag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16615673 gacagctttcttccgccaacatggatgcacagccaatgatgccaacaccaaatataatag 16615732
Query: 353 cagagctgcccagatgtaccgggaaaagatccggcagctggggagtgcggccctggctag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16615733 cagagctgcccagatgtaccgggaaaagatccggcagctggggagtgcggccctggctag 16615792
Query: 413 gcatggcactgat 425
|||||||||||||
Sbjct: 16615793 gcatggcactgat 16615805
Score = 262 bits (132), Expect = 9e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 836 ggttgcctccatgcgtctggcctaccaggagctccagattgaccgtaagaaggaggagaa 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16618807 ggttgcctccatgcgtctggcctaccaggagctccagattgaccgtaagaaggaggagaa 16618866
Query: 896 gaagctacagaatctggaagggaagaagcgagagcaggcagagaggctgggcatgggctt 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16618867 gaagctacagaatctggaagggaagaagcgagagcaggcagagaggctgggcatgggctt 16618926
Query: 956 ggtgtcccgaag 967
||||||||||||
Sbjct: 16618927 ggtgtcccgaag 16618938
Score = 256 bits (129), Expect = 6e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1230 agggtcacaaaccggagggaagtggaaagccggagctcaggccttgagtcgagtgaggca 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16622501 agggtcacaaaccggagggaagtggaaagccggagctcaggccttgagtcgagtgaggca 16622560
Query: 1290 cggcagaaatttgcaggagccaaagccatctcatctgacatgttctttgggcgggaggta 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16622561 cggcagaaatttgcaggagccaaagccatctcatctgacatgttctttgggcgggaggta 16622620
Query: 1350 gattctgag 1358
|||||||||
Sbjct: 16622621 gattctgag 16622629
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 100 aggcctgttttgactgtggcgccaagaatccgagttgggctagcatcacgtatggtgttt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16614422 aggcctgttttgactgtggcgccaagaatccgagttgggctagcatcacgtatggtgttt 16614481
Query: 160 tcttgtgcattgattgctccggggtgcatcgctccctgggcgtccatctcagcttcatca 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16614482 tcttgtgcattgattgctccggggtgcatcgctccctgggcgtccatctcagcttcatca 16614541
Query: 220 ggt 222
|||
Sbjct: 16614542 ggt 16614544
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1450 caggtagcgtatctctggggaatgtgctgcccacggctgacattgcccagtttaagcagg 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16622982 caggtagcgtatctctggggaatgtgctgcccacggctgacattgcccagtttaagcagg 16623041
Query: 1510 gtgtcaagtctgtggccgggaagatggctgtgctggccaatggtgtgatgaattctttgc 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16623042 gtgtcaagtctgtggccgggaagatggctgtgctggccaatggtgtgatgaattctttgc 16623101
Query: 1570 agg 1572
|||
Sbjct: 16623102 agg 16623104
Score = 198 bits (100), Expect = 1e-47
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1357 agtatgaagccagatctcggctacagcagctctcaggcagcagtgccatcagctcttcag 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16622785 agtatgaagccagatctcggctacagcagctctcaggcagcagtgccatcagctcttcag 16622844
Query: 1417 acctctttggggacatggatggagctcatggagcaggtag 1456
||||||||||||||||||||||||||||||||||||||||
Sbjct: 16622845 acctctttggggacatggatggagctcatggagcaggtag 16622884
Score = 196 bits (99), Expect = 5e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 4 gcgctggaatctgggaaggagagaaaatggcggccgagccgagcaagacagagatccaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16614157 gcgctggaatctgggaaggagagaaaatggcggccgagccgagcaagacagagatccaaa 16614216
Query: 64 ctctttttaagaggcttcgcgcaattccaaccaacaagg 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 16614217 ctctttttaagaggcttcgcgcaattccaaccaacaagg 16614255
Score = 163 bits (82), Expect = 6e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 507 ccccctgcctggagtgcaccagctactgatctgtctgagacccagcagccagccccatct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16616684 ccccctgcctggagtgcaccagctactgatctgtctgagacccagcagccagccccatct 16616743
Query: 567 gcagagagcagtggcctggcac 588
||||||||||||||||||||||
Sbjct: 16616744 gcagagagcagtggcctggcac 16616765
Score = 161 bits (81), Expect = 3e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 426 ctttggatagacaatatgagtagtgctcccagccactccccagagaagaaggactctgat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16615893 ctttggatagacaatatgagtagtgctcccagccactccccagagaagaaggactctgat 16615952
Query: 486 ttcttctccgaacacactcaa 506
|||||||||||||||||||||
Sbjct: 16615953 ttcttctccgaacacactcaa 16615973
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 218 caggtccacagagttggattccaactggaactggttccagctgaggtgtatgcaggtcgg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16615085 caggtccacagagttggattccaactggaactggttccagctgaggtgtatgcaggtcgg 16615144
Query: 278 cgggaatgccaatgcg 293
||||||||||||||||
Sbjct: 16615145 cgggaatgccaatgcg 16615160
Score = 113 bits (57), Expect = 5e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 589 aaccagagcacggccccaacatggacctgcttggcacctcacccaaagcctctctgg 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16617043 aaccagagcacggccccaacatggacctgcttggcacctcacccaaagcctctctgg 16617099
Score = 107 bits (54), Expect = 3e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 645 gaactgaaaacctccctcattggcaagaagaagccagcggcagctaagaaaggg 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16618138 gaactgaaaacctccctcattggcaagaagaagccagcggcagctaagaaaggg 16618191
>gb|GL893675.2| Sus scrofa unplaced genomic scaffold ChrUScaf1560
Length = 118150
Score = 1727 bits (871), Expect = 0.0
Identities = 902/912 (98%), Gaps = 4/912 (0%)
Strand = Plus / Minus
Query: 1881 gctgggagtgaggggagggagtcccctcaggatggctgattctgggtctagctcttcccc 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51645 gctgggagtgaggggagggagtcccctcaggatggctgattctgggtctagctcttcccc 51586
Query: 1941 aaattggggcagtaaaaagagtaaggctttttgctggctctaggatccttccaggccgtc 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51585 aaattggggcagtaaaaagagtaaggctttttgctggctctaggatccttccaggccgtc 51526
Query: 2001 tgggggtttggcccccgtcctctgaaaccagcagggaggtctagaaagttctgctgcaca 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51525 tgggggtttggcccccgtcctctgaaaccagcagggaggtctagaaagttctgctgcaca 51466
Query: 2061 ccggcccctgggggaggcaggccctggacttgctgctgccgttgctgctccgggagagga 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51465 ccggcccctgggggaggcaggccctggacttgctgctgccgttgctgctccgggagagga 51406
Query: 2121 caggggaggggaaggaccttcgtctgggcctcactaagggctagaaccttcacctggtac 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51405 caggggaggggaaggaccttcgtctgggcctcactaagggctagaaccttcacctggtac 51346
Query: 2181 ctaacgggatcagactggaggcccaagtggtctcttgctgtcccacggcccctttttaca 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51345 ctaacgggatcagactggaggcccaagtggtctcttgctgtcccacggcccctttttaca 51286
Query: 2241 gtgatcacctggaggggtctctctccttctgggtgtctctgagtccccctataccatcca 2300
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 51285 gtgatcacctggaggggtctctctccttctgggtgtctctgagtcctcctatactatcca 51226
Query: 2301 tcgtagaccacagaaccctctgtcccctcctgagcctctgtcccttctccccctgcttgg 2360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51225 tcgtggaccacagaaccctctgtcccctcctgagcctctgtcccttctccccctgcttgg 51166
Query: 2361 tggccatgaaaggtctcatgtgccccatactctgctctggatgctgtgagcataatgctg 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51165 tggccatgaaaggtctcatgtgccccatactctgctctggatgctgtgagcataatgctg 51106
Query: 2421 gctcaggaagagaggatgtgagggacagaaacaggctcccggggctcacctttcttcctc 2480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51105 gctcaggaagagaggatgtgagggacagaaacaggctcccggggctcacctttcttcctc 51046
Query: 2481 ggcatcatcttggttttagggggccctggacagcacccaacccgagagcctggggcgcct 2540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51045 ggcatcatcttggttttagggggccctggacagcacccaacccgagagcctggggcgcct 50986
Query: 2541 acagagctgcaggtcttaccccccaggccacgcactgtgccatccttggtgccatcttcc 2600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50985 acagagctgcaggtcttaccccccaggccacgcactgtgccatccttggtgccatcttcc 50926
Query: 2601 ctgccgtgccggcagcctggacccgccccacccctgttgggctgaggattgggctcccaa 2660
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 50925 ctgccgtgccggcagcctggacccaccccacccctggtgggctgaggattgggctcccaa 50866
Query: 2661 gcagcacagaccactgtccccaccaccctctcccctgaagggatgtgactttctttctgg 2720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50865 gcagcacagaccactgtccccaccaccctctcccctgaagggatgtgactttctttctgg 50806
Query: 2721 actgtttgtattgaaacaa----agtagtgtcaaataaagccctgatggggccctgggcc 2776
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 50805 actgtttgtattgaaacaaagtnagtagtgtcaaacaaagccctgatggggccctgggcc 50746
Query: 2777 tctgttggtctg 2788
||||||||||||
Sbjct: 50745 tctgttggtctg 50734
Score = 583 bits (294), Expect = e-163
Identities = 294/294 (100%)
Strand = Plus / Minus
Query: 1570 aggatcgctatggttcctactgatccagggtcatggctcagacgtatggtgttgacagca 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52039 aggatcgctatggttcctactgatccagggtcatggctcagacgtatggtgttgacagca 51980
Query: 1630 gcaaaaacctcatgattcccaggcctgggatgcttgcctcgtggaagctggggaggaatg 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51979 gcaaaaacctcatgattcccaggcctgggatgcttgcctcgtggaagctggggaggaatg 51920
Query: 1690 gttcttttttacatgtggtgtgtgagtggggtggcctttgaggatctcgggtgagggatg 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51919 gttcttttttacatgtggtgtgtgagtggggtggcctttgaggatctcgggtgagggatg 51860
Query: 1750 ggcgggtaccagcccctgacctctgcctggagactgagcccttattctcctccctcacac 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51859 ggcgggtaccagcccctgacctctgcctggagactgagcccttattctcctccctcacac 51800
Query: 1810 ctccacccctgtgtgctaggttctcgttcttccactcctgccccaaagctgctg 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51799 ctccacccctgtgtgctaggttctcgttcttccactcctgccccaaagctgctg 51746
Score = 270 bits (136), Expect = 4e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 1097 gtacaaggacaaccccttttccctgggggagagttttggttcccgctgggatgcagatgc 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54416 gtacaaggacaaccccttttccctgggggagagttttggttcccgctgggatgcagatgc 54357
Query: 1157 tgcctggggtatggacaggatggaggagaaggagccagaagtgaccatctcaagcatccg 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54356 tgcctggggtatggacaggatggaggagaaggagccagaagtgaccatctcaagcatccg 54297
Query: 1217 gcccatttcagaaagg 1232
||||||||||||||||
Sbjct: 54296 gcccatttcagaaagg 54281
Score = 266 bits (134), Expect = 6e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 966 agctctgtttcccactcggtgctgtctgagatgcaggtgatcgagcaggaaaccccagtg 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54626 agctctgtttcccactcggtgctgtctgagatgcaggtgatcgagcaggaaaccccagtg 54567
Query: 1026 agtgcaaaatcctcccgctcgcagctggacttgttcgacgatgttggtactttcgcctct 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54566 agtgcaaaatcctcccgctcgcagctggacttgttcgacgatgttggtactttcgcctct 54507
Query: 1086 ggacccccaaagta 1099
||||||||||||||
Sbjct: 54506 ggacccccaaagta 54493
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 293 gacagctttcttccgccaacatggatgcacagccaatgatgccaacaccaaatataatag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57974 gacagctttcttccgccaacatggatgcacagccaatgatgccaacaccaaatataatag 57915
Query: 353 cagagctgcccagatgtaccgggaaaagatccggcagctggggagtgcggccctggctag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57914 cagagctgcccagatgtaccgggaaaagatccggcagctggggagtgcggccctggctag 57855
Query: 413 gcatggcactgat 425
|||||||||||||
Sbjct: 57854 gcatggcactgat 57842
Score = 256 bits (129), Expect = 6e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1230 agggtcacaaaccggagggaagtggaaagccggagctcaggccttgagtcgagtgaggca 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53165 agggtcacaaaccggagggaagtggaaagccggagctcaggccttgagtcgagtgaggca 53106
Query: 1290 cggcagaaatttgcaggagccaaagccatctcatctgacatgttctttgggcgggaggta 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53105 cggcagaaatttgcaggagccaaagccatctcatctgacatgttctttgggcgggaggta 53046
Query: 1350 gattctgag 1358
|||||||||
Sbjct: 53045 gattctgag 53037
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1450 caggtagcgtatctctggggaatgtgctgcccacggctgacattgcccagtttaagcagg 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52684 caggtagcgtatctctggggaatgtgctgcccacggctgacattgcccagtttaagcagg 52625
Query: 1510 gtgtcaagtctgtggccgggaagatggctgtgctggccaatggtgtgatgaattctttgc 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52624 gtgtcaagtctgtggccgggaagatggctgtgctggccaatggtgtgatgaattctttgc 52565
Query: 1570 agg 1572
|||
Sbjct: 52564 agg 52562
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 100 aggcctgttttgactgtggcgccaagaatccgagttgggctagcatcacgtatggtgttt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59297 aggcctgttttgactgtggcgccaagaatccgagttgggctagcatcacgtatggtgttt 59238
Query: 160 tcttgtgcattgattgctccggggtgcatcgctccctgggcgtccatctcagcttcatca 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59237 tcttgtgcattgattgctccggggtgcatcgctccctgggcgtccatctcagcttcatca 59178
Query: 220 ggt 222
|||
Sbjct: 59177 ggt 59175
Score = 198 bits (100), Expect = 1e-47
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1357 agtatgaagccagatctcggctacagcagctctcaggcagcagtgccatcagctcttcag 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52881 agtatgaagccagatctcggctacagcagctctcaggcagcagtgccatcagctcttcag 52822
Query: 1417 acctctttggggacatggatggagctcatggagcaggtag 1456
||||||||||||||||||||||||||||||||||||||||
Sbjct: 52821 acctctttggggacatggatggagctcatggagcaggtag 52782
Score = 163 bits (82), Expect = 6e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 507 ccccctgcctggagtgcaccagctactgatctgtctgagacccagcagccagccccatct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56876 ccccctgcctggagtgcaccagctactgatctgtctgagacccagcagccagccccatct 56817
Query: 567 gcagagagcagtggcctggcac 588
||||||||||||||||||||||
Sbjct: 56816 gcagagagcagtggcctggcac 56795
Score = 161 bits (81), Expect = 3e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 426 ctttggatagacaatatgagtagtgctcccagccactccccagagaagaaggactctgat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57754 ctttggatagacaatatgagtagtgctcccagccactccccagagaagaaggactctgat 57695
Query: 486 ttcttctccgaacacactcaa 506
|||||||||||||||||||||
Sbjct: 57694 ttcttctccgaacacactcaa 57674
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 218 caggtccacagagttggattccaactggaactggttccagctgaggtgtatgcaggtcgg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58562 caggtccacagagttggattccaactggaactggttccagctgaggtgtatgcaggtcgg 58503
Query: 278 cgggaatgccaatgcg 293
||||||||||||||||
Sbjct: 58502 cgggaatgccaatgcg 58487
Score = 141 bits (71), Expect = 2e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 32 ggcggccgagccgagcaagacagagatccaaactctttttaagaggcttcgcgcaattcc 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59534 ggcggccgagccgagcaagacagagatccaaactctttttaagaggcttcgcgcaattcc 59475
Query: 92 aaccaacaagg 102
|||||||||||
Sbjct: 59474 aaccaacaagg 59464
Score = 79.8 bits (40), Expect = 7e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 589 aaccagagcacggccccaacatggacctgcttggcacctc 628
||||||||||||||||||||||||||||||||||||||||
Sbjct: 56517 aaccagagcacggccccaacatggacctgcttggcacctc 56478
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 84,176,657
Number of extensions: 698
Number of successful extensions: 698
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 30
Length of query: 2788
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2766
Effective length of database: 2,808,408,574
Effective search space: 7768058115684
Effective search space used: 7768058115684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)