Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008493
(1375 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030439.1| tetraspanin-13 [Bos taurus]. 370 e-102
Alignment gi|NP_001032684.1| tetraspanin-31 [Bos taurus]. 233 2e-61
Alignment gi|NP_991372.1| CD63 antigen [Bos taurus]. 57 5e-08
Alignment gi|NP_001095322.1| tetraspanin-4 [Bos taurus]. 54 3e-07
Alignment gi|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus]. 50 4e-06
Alignment gi|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus]. 50 4e-06
Alignment gi|NP_001030564.1| tetraspanin-3 [Bos taurus]. 49 8e-06
>ref|NP_001030439.1| tetraspanin-13 [Bos taurus].
Length = 204
Score = 370 bits (950), Expect = e-102
Identities = 181/204 (88%), Positives = 186/204 (91%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKNCLCA IGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTASARN 630
LVGLIGAVKHHQVLLFFYMIILLLVFI QFSVSCACLALNQ QQ+QLLEVGWNNTASAR+
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQAQLLEVGWNNTASARD 120
Query: 631 DIQRNLNCCGFRRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTE 810
DIQRNLNCCGFR NPNDTCLASC+KS H CSPCAPIIG+YAGEVL+FVGGIGLFFSFTE
Sbjct: 121 DIQRNLNCCGFRSFNPNDTCLASCVKSSHPCSPCAPIIGRYAGEVLRFVGGIGLFFSFTE 180
Query: 811 ILGVWLTYRYRNQKDPRANPSAFL 882
ILGVWLTYRYRNQKDPRANPSAFL
Sbjct: 181 ILGVWLTYRYRNQKDPRANPSAFL 204
>ref|NP_001032684.1| tetraspanin-31 [Bos taurus].
Length = 210
Score = 233 bits (595), Expect = 2e-61
Identities = 114/210 (54%), Positives = 143/210 (68%), Gaps = 6/210 (2%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKN LCA IG+AAW G GL+SS+ ++G VIAVG+FL LIA
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVG-WNNTASAR 627
+ GL+GAV HHQVLLFFYMIIL LVFIFQF +SC+CLA+N +Q+ ++ W + R
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDVINASWWVMSNKTR 120
Query: 628 NDIQRNLNCCGFRRLNPNDT-----CLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGL 792
++++R+ +CCG L D C A C +C C K++ E L+ +GG+GL
Sbjct: 121 DELERSFDCCGLFNLTTLDQQDYAFCTAVCKSRSPTCQMCGEKFLKHSDEALKILGGVGL 180
Query: 793 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 882
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|NP_991372.1| CD63 antigen [Bos taurus].
Length = 237
Score = 56.6 bits (135), Expect = 5e-08
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 38/197 (19%)
Frame = +1
Query: 352 IGIAAWGIGFGLISSLRVVG----------VVIAVGIFLFLIALVGLIGAVKHHQVLLFF 501
+G+ A G+G L+ + + V+IAVG FLFL+A VG GA K + L+
Sbjct: 26 VGLIAVGVGTHLVLNQTITHGATPSFLLPVVIIAVGAFLFLVAFVGCCGACKENYCLMIT 85
Query: 502 YMIILLLVFIFQFSVSCACLALNQGQQSQLLE---------VGWNNTASARNDIQRNLNC 654
+ I L L+ + + + + A +S+ + N TAS + +Q++ C
Sbjct: 86 FAIFLSLIMLVEVAAAIAGYVFRDKVRSEFNKDFRQQMKNYPKDNQTASILDKMQKDFEC 145
Query: 655 CGFRRLNPNDTCLA--------SCMKSRHSC-----------SPCAPIIGKYAGEVLQFV 777
CG + LA C+ H+C C I + + + V
Sbjct: 146 CGAANYTDWEKILAVTNKVPDSCCVNITHNCGINFVVKDIHTEGCVEKIAAWLRKNVLVV 205
Query: 778 GGIGLFFSFTEILGVWL 828
L +F EILG+ L
Sbjct: 206 VAAALGIAFVEILGIVL 222
>ref|NP_001095322.1| tetraspanin-4 [Bos taurus].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG IGA+K ++ LL + + LLLVF+ + ++ A
Sbjct: 50 SLSAANLLIVTGAFVMAIGFVGCIGAIKENKCLLLTFFVALLLVFLLEACITILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQRDLKKGLHLYGTPGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKMWLQENLLAVGVFGLCTALVQILGL 220
>ref|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 50.4 bits (119), Expect = 4e-06
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL +VIA+G + + +G +GA+K ++ LL + I+LL++ + + +
Sbjct: 141 SLSAANLVIAIGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMD 200
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+N+ + L E VG N A N IQ ++CCG F L N
Sbjct: 201 KVNENAKKDLKEGLLLYNSENNVGLKN---AWNIIQAEMHCCGVTDYKDWFSVLGENTVP 257
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
CM++ C + C + ++ + +G +G+ T+ILG+
Sbjct: 258 DRCCMENSQGCGQNNTTLVWKTGCYEKVTQWFADNKHVLGTVGMCLLITQILGM 311
>ref|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 50.4 bits (119), Expect = 4e-06
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL +VIA+G + + +G +GA+K ++ LL + I+LL++ + + +
Sbjct: 141 SLSAANLVIAIGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMD 200
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+N+ + L E VG N A N IQ ++CCG F L N
Sbjct: 201 KVNENAKKDLKEGLLLYNSENNVGLKN---AWNIIQAEMHCCGVTDYKDWFSVLGENTVP 257
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
CM++ C + C + ++ + +G +G+ T+ILG+
Sbjct: 258 DRCCMENSQGCGQNNTTLVWKTGCYEKVTQWFADNKHVLGTVGMCLLITQILGM 311
>ref|NP_001030564.1| tetraspanin-3 [Bos taurus].
Length = 253
Score = 49.3 bits (116), Expect = 8e-06
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 35/172 (20%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQL 591
V+IAVG LF+I L+G ++ + L ++IILLLVF+ + V ++++
Sbjct: 56 VIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEV 115
Query: 592 ---------LEVGWNNTASAR--NDIQRNLNCCG------------FRRLNPNDTCLASC 702
G N A++R + +QR L+CCG F+ L+ C
Sbjct: 116 DRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCC 175
Query: 703 MKSRHSCS------------PCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
++ SC+ C ++ K E++ V L F+ ++LG+
Sbjct: 176 RETASSCNGSLANPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGM 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,492,696
Number of extensions: 1197146
Number of successful extensions: 5407
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5386
Number of HSP's successfully gapped: 7
Length of query: 458
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,174,046
Effective search space: 4989264192
Effective search space used: 4989264192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008493
(1375 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539449.2| PREDICTED: similar to Tetraspanin-13 (Tspan-13)... 369 e-102
Alignment gi|XP_531651.1| PREDICTED: similar to sarcoma amplified sequenc... 236 3e-62
Alignment gi|XP_531624.2| PREDICTED: similar to CD63 antigen (Melanoma-as... 56 7e-08
Alignment gi|XP_854185.1| PREDICTED: similar to Tetraspanin-4 (Tspan-4) (... 55 2e-07
Alignment gi|XP_544788.2| PREDICTED: similar to Tetraspanin-3 (Tspan-3) (... 49 9e-06
>ref|XP_539449.2| PREDICTED: similar to Tetraspanin-13 (Tspan-13) (Transmembrane 4
superfamily member 13) (Tetraspan NET-6) [Canis
familiaris].
Length = 313
Score = 369 bits (948), Expect = e-102
Identities = 190/235 (80%), Positives = 195/235 (82%), Gaps = 1/235 (0%)
Frame = +1
Query: 181 PKARTKR-LSGGSAGARFYL*RSLPGTTGYKMVCGGFACSKNCLCAXXXXXXXXXXXXIG 357
P+ R +R GG A A F R +MVCGGFACSKNCLCA IG
Sbjct: 80 PQRRGQRGRPGGPARATFTCGRGQAARAA-EMVCGGFACSKNCLCALNLLYTLVSLLLIG 138
Query: 358 IAAWGIGFGLISSLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQ 537
IAAWGIGFGLISSLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFI Q
Sbjct: 139 IAAWGIGFGLISSLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQ 198
Query: 538 FSVSCACLALNQGQQSQLLEVGWNNTASARNDIQRNLNCCGFRRLNPNDTCLASCMKSRH 717
FSVSCACLALN+ QQ QLLEVGWNNTASARNDIQRNLNCCGFR NPNDTCLASC KS H
Sbjct: 199 FSVSCACLALNEEQQGQLLEVGWNNTASARNDIQRNLNCCGFRSFNPNDTCLASCAKSSH 258
Query: 718 SCSPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGVWLTYRYRNQKDPRANPSAFL 882
CS CAPIIGKYAGEVL+FVGGIGLFFSFTEILGVWLTYRYRNQKDPRANPSAFL
Sbjct: 259 PCSLCAPIIGKYAGEVLRFVGGIGLFFSFTEILGVWLTYRYRNQKDPRANPSAFL 313
>ref|XP_531651.1| PREDICTED: similar to sarcoma amplified sequence [Canis
familiaris].
Length = 210
Score = 236 bits (603), Expect = 3e-62
Identities = 117/213 (54%), Positives = 146/213 (68%), Gaps = 9/213 (4%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKN LCA IG+AAWG G GL+SS+ ++G VIAVG+FL LIA
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGW----NNTA 618
+ GL+GAV HHQVLLFFYMIIL LVFIFQF +SC+CLA+N+ +Q+ ++ W NNT
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINRSKQTDVINASWWVMSNNT- 119
Query: 619 SARNDIQRNLNCCGFRRL-----NPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGG 783
R++++R+ +CCG L C A C +C C K++ E L+ +GG
Sbjct: 120 --RDELERSFDCCGLFNLTTLYQQDYAFCTAICKSRSSTCQMCGEKFLKHSDEALKILGG 177
Query: 784 IGLFFSFTEILGVWLTYRYRNQKDPRANPSAFL 882
+GLFFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 178 VGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|XP_531624.2| PREDICTED: similar to CD63 antigen (Melanoma-associated antigen
ME491) (Lysosome-associated membrane glycoprotein 3)
(LAMP-3) (Ocular melanoma-associated antigen) (OMA81H)
(Granulophysin) (Tetraspanin-30) (Tspan-30) [Canis
familiaris].
Length = 238
Score = 56.2 bits (134), Expect = 7e-08
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 42/199 (21%)
Frame = +1
Query: 352 IGIAAWGIGFGLISSLRVVG----------VVIAVGIFLFLIALVGLIGAVKHHQVLLFF 501
+G+ A G+G L+ S +V V+IAVG FLFL+A VG GA K + L+
Sbjct: 26 VGLIAVGVGAQLVLSQTIVQGATPGSLLPVVIIAVGAFLFLVAFVGCCGACKENYCLMIT 85
Query: 502 YMIILLLVFIFQFSVSCA--------CLALNQGQQSQLLEVGWNN-TASARNDIQRNLNC 654
+ I L L+ + + + + A N+ + Q+ NN TAS + +Q + C
Sbjct: 86 FAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNKDFREQMKNYQKNNHTASILDRMQEDFKC 145
Query: 655 CGFRR--------LNPN----DTCLASCMKSRHSC-----------SPCAPIIGKYAGEV 765
CG L P D+C C+ C C IG +
Sbjct: 146 CGAANYTDWQTVSLMPKGQVPDSC---CINVTKDCGISFNVKNIYSEGCVEKIGGWLRSN 202
Query: 766 LQFVGGIGLFFSFTEILGV 822
+ V L +F E+LG+
Sbjct: 203 VLVVAAAALGIAFVEVLGI 221
>ref|XP_854185.1| PREDICTED: similar to Tetraspanin-4 (Tspan-4) (Transmembrane 4
superfamily member 7) (Novel antigen 2) (NAG-2) [Canis
familiaris].
Length = 257
Score = 55.1 bits (131), Expect = 2e-07
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG IGA+K H+ LL + + LLLV + + +V+ A
Sbjct: 69 SLSAANLLIVTGTFVMAIGFVGCIGAIKEHKCLLLTFFVTLLLVLLLEVTVTVLFFAYTD 128
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 129 KIDRYAQQDLKKGLHLYGTPGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 185
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + ++LG+
Sbjct: 186 DSCCLEFSESCGLHAPGTWWKAPCYETVKTWLQENLLAVGIFGLCTALVQLLGL 239
>ref|XP_544788.2| PREDICTED: similar to Tetraspanin-3 (Tspan-3) (Transmembrane 4
superfamily member 8) (Tetraspanin TM4-A) [Canis
familiaris].
Length = 424
Score = 49.3 bits (116), Expect = 9e-06
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 35/172 (20%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQL 591
V+IAVG LF+I L+G ++ + L ++IILLLVF+ + V ++++
Sbjct: 227 VIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEV 286
Query: 592 ---------LEVGWNNTASAR--NDIQRNLNCCG------------FRRLNPNDTCLASC 702
G N A++R + +QR L+CCG F+ L+ C
Sbjct: 287 DRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCC 346
Query: 703 MKSRHSCS------------PCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
++ SC+ C ++ K E++ V L F+ ++LG+
Sbjct: 347 RETASSCNGSLAHPSNLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGM 398
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,297,474
Number of extensions: 1223492
Number of successful extensions: 5459
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5341
Number of HSP's successfully gapped: 5
Length of query: 458
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 352
Effective length of database: 15,340,888
Effective search space: 5399992576
Effective search space used: 5399992576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008493
(1375 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357506.1| PREDICTED: tetraspanin-13-like [Sus scrofa]. 391 e-109
Alignment gi|XP_003360785.1| PREDICTED: tetraspanin-31-like [Sus scrofa]. 237 1e-62
Alignment gi|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa]. 54 2e-07
Alignment gi|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa]. 51 2e-06
>ref|XP_003357506.1| PREDICTED: tetraspanin-13-like [Sus scrofa].
Length = 204
Score = 391 bits (1005), Expect = e-109
Identities = 192/204 (94%), Positives = 192/204 (94%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKNCLCA IGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTASARN 630
LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTASARN
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTASARN 120
Query: 631 DIQRNLNCCGFRRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTE 810
DIQRNLNCCGFRRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTE
Sbjct: 121 DIQRNLNCCGFRRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTE 180
Query: 811 ILGVWLTYRYRNQKDPRANPSAFL 882
ILGVWLTYRYRNQKDPRANPSAFL
Sbjct: 181 ILGVWLTYRYRNQKDPRANPSAFL 204
>ref|XP_003360785.1| PREDICTED: tetraspanin-31-like [Sus scrofa].
Length = 210
Score = 237 bits (605), Expect = 1e-62
Identities = 115/210 (54%), Positives = 144/210 (68%), Gaps = 6/210 (2%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKN LCA IG+AAW G GL+SS+ ++G VIAVG+FL LIA
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTAS-AR 627
+ GL+GAV HHQVLLFFYMIIL LVFIFQF +SC+CLA+N +Q+ ++ W ++ R
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTR 120
Query: 628 NDIQRNLNCCGFRRLNPNDT-----CLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGL 792
N+++R+ +CCG L D C A C SC C +++ E L+ +GG+GL
Sbjct: 121 NELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGL 180
Query: 793 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 882
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa].
Length = 238
Score = 54.3 bits (129), Expect = 2e-07
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++IA G + I VG IGA+K ++ LL + ++LLLVF+ + +V+
Sbjct: 50 SLSAANLLIATGTLVMAIGFVGCIGAIKENRCLLLTFFVVLLLVFLLEATVAVLFFTYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQRDLKKGLHLYGTPGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKMWLQENLLAVGVFGLCTALVQILGL 220
>ref|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa].
Length = 237
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--------L 567
V+IAVG FLFL+A VG G K + L+ + I L L+ + + + + A
Sbjct: 56 VIIAVGAFLFLVAFVGCCGTCKENYCLMVTFAIFLSLIMLVEVAAAIAGYVFRDKVKAEF 115
Query: 568 NQGQQSQLLEVGWNN-TASARNDIQRNLNCCGFRRLNPNDTCLASCMKSRHSC------- 723
N+ Q Q+ NN TA + +Q + CCG + L S + SC
Sbjct: 116 NKDFQQQMQNYPKNNHTALILDRMQEDFKCCGAANYTDWEKILLSPKRVPDSCCVNVTQH 175
Query: 724 ------------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
C IG + + L +F E+LG+
Sbjct: 176 CGVNFNVKEIHNEGCVEKIGSWLRSNVLVAAAAALGIAFVEVLGI 220
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,832,964
Number of extensions: 761797
Number of successful extensions: 3619
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3557
Number of HSP's successfully gapped: 4
Length of query: 458
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,804,438
Effective search space: 3134379928
Effective search space used: 3134379928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008493
(1375 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079635.1| tetraspanin-13 [Mus musculus]. 359 3e-99
Alignment gi|NP_080258.1| tetraspanin-31 [Mus musculus]. 236 4e-62
Alignment gi|NP_444312.1| tetraspanin-4 [Mus musculus]. 57 4e-08
Alignment gi|NP_001036045.1| CD63 antigen [Mus musculus]. 54 3e-07
Alignment gi|NP_031679.1| CD63 antigen [Mus musculus]. 54 3e-07
Alignment gi|XP_003086153.1| PREDICTED: CD63 antigen-like [Mus musculus]. 53 6e-07
Alignment gi|NP_062767.3| tetraspanin-3 [Mus musculus]. 50 5e-06
>ref|NP_079635.1| tetraspanin-13 [Mus musculus].
Length = 204
Score = 359 bits (921), Expect = 3e-99
Identities = 177/204 (86%), Positives = 181/204 (88%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGF+CSKNCLCA IGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA
Sbjct: 1 MVCGGFSCSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTASARN 630
LVGLIGAVKHHQVLLFFYMIILLLVFI QFSVSCACLALN+ QQ QLLEVGWNNTASARN
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNREQQGQLLEVGWNNTASARN 120
Query: 631 DIQRNLNCCGFRRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTE 810
DIQRNLNCCGFR NPNDTC ASC KS CS CAPIIG+YAGEVL+FVGGIGLFFSFTE
Sbjct: 121 DIQRNLNCCGFRSYNPNDTCPASCAKSTQKCSSCAPIIGEYAGEVLRFVGGIGLFFSFTE 180
Query: 811 ILGVWLTYRYRNQKDPRANPSAFL 882
ILGVWLTYRYRNQKDPRANPSAFL
Sbjct: 181 ILGVWLTYRYRNQKDPRANPSAFL 204
>ref|NP_080258.1| tetraspanin-31 [Mus musculus].
Length = 210
Score = 236 bits (601), Expect = 4e-62
Identities = 112/210 (53%), Positives = 147/210 (70%), Gaps = 6/210 (2%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACS+N LCA IG+AAWG G G++SS+ ++G VIAVG+FL LIA
Sbjct: 1 MVCGGFACSRNALCALNVVYMLVGFLLIGVAAWGKGLGVVSSIHIIGGVIAVGVFLLLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTA-SAR 627
+ GL+GA HHQVLLFFYMIIL LVFIFQF +SC+CLA+N+ Q+ ++ W+ + S R
Sbjct: 61 VAGLVGAANHHQVLLFFYMIILGLVFIFQFGISCSCLAINRNTQADVINASWSVLSNSTR 120
Query: 628 NDIQRNLNCCGF-----RRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGL 792
++++R+ +CCG RL + +C A C +C C K++ + L+ +GG+GL
Sbjct: 121 HELERSFDCCGLFNLTTLRLQDDTSCSAVCKTKSSTCQMCGERFLKHSDKALKILGGVGL 180
Query: 793 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 882
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|NP_444312.1| tetraspanin-4 [Mus musculus].
Length = 238
Score = 56.6 bits (135), Expect = 4e-08
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQ 573
SL ++I G F+ I VG IGA+K ++ LL + ++LLLVF+ + +++ A +
Sbjct: 50 SLSAANLLIVTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSD 109
Query: 574 GQQS---QLLEVGWN--------NTASARNDIQRNLNCCG-------FRRLNPNDTCLAS 699
S Q L+ G + +A + IQ + CCG F N +
Sbjct: 110 KIDSYAQQDLKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSC 169
Query: 700 CMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
C++ SC SPC + + E L VG GL + +ILG+
Sbjct: 170 CLEFSDSCGLHEPGTWWKSPCYETVKAWLQENLLAVGIFGLCTALVQILGL 220
>ref|NP_001036045.1| CD63 antigen [Mus musculus].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--------L 567
V+IAVG FLFL+A VG GA K + L+ + I L L+ + + +V+ A
Sbjct: 56 VIIAVGAFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEF 115
Query: 568 NQGQQSQLLE-VGWNNTASARNDIQRNLNCCGFRRLN-------------PNDTCL---A 696
N+ Q Q+ + N TA+ + +Q+ NCCG P+ C+
Sbjct: 116 NKSFQQQMQNYLKDNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDSCCINITV 175
Query: 697 SC----MKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
C +S C I + + + V L +F E+LG+
Sbjct: 176 GCGNDFKESTIHTQGCVETIAIWLRKNILLVAAAALGIAFVEVLGI 221
>ref|NP_031679.1| CD63 antigen [Mus musculus].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--------L 567
V+IAVG FLFL+A VG GA K + L+ + I L L+ + + +V+ A
Sbjct: 56 VIIAVGAFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEF 115
Query: 568 NQGQQSQLLE-VGWNNTASARNDIQRNLNCCGFRRLN-------------PNDTCL---A 696
N+ Q Q+ + N TA+ + +Q+ NCCG P+ C+
Sbjct: 116 NKSFQQQMQNYLKDNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDSCCINITV 175
Query: 697 SC----MKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
C +S C I + + + V L +F E+LG+
Sbjct: 176 GCGNDFKESTIHTQGCVETIAIWLRKNILLVAAAALGIAFVEVLGI 221
>ref|XP_003086153.1| PREDICTED: CD63 antigen-like [Mus musculus].
Length = 238
Score = 52.8 bits (125), Expect = 6e-07
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--------L 567
++IAVG FLFL+A VG GA K + L+ + I L L+ + + +V+ A
Sbjct: 56 IIIAVGAFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEF 115
Query: 568 NQGQQSQLLE-VGWNNTASARNDIQRNLNCCGFRRLN-------------PNDTCL---A 696
N+ Q Q+ + N TA+ + +Q+ NCCG P+ C+
Sbjct: 116 NKSFQQQMQNYLKDNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDACCINITV 175
Query: 697 SC----MKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
C +S C I + + + V L +F E+LG+
Sbjct: 176 GCGNDFKESTIHTQGCVETIAIWLRKNILLVAAAALGIAFVEVLGI 221
>ref|NP_062767.3| tetraspanin-3 [Mus musculus].
Length = 253
Score = 49.7 bits (117), Expect = 5e-06
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 35/172 (20%)
Frame = +1
Query: 412 VVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQL 591
V+IAVG LF+I L+G ++ + L ++ ILLLVF+ + V ++++
Sbjct: 56 VIIAVGALLFIIGLIGCCATIRESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEV 115
Query: 592 ---------LEVGWNNTASAR--NDIQRNLNCCG------------FRRLNPNDTCLASC 702
G N+ A++R + +QR L+CCG F+ L+ C
Sbjct: 116 DRSIQKVYKTYNGTNSDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCC 175
Query: 703 MKSRHSCS------------PCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
++ SC+ C ++ K E+L V L F+ ++LG+
Sbjct: 176 RETAKSCNGSLANPSDLYAEGCEALVVKKLQEILMHVIWAALAFAAIQLLGM 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,846,280
Number of extensions: 1034251
Number of successful extensions: 4322
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4281
Number of HSP's successfully gapped: 7
Length of query: 458
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 353
Effective length of database: 12,463,779
Effective search space: 4399713987
Effective search space used: 4399713987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008493
(1375 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055214.1| tetraspanin-13 [Homo sapiens]. 373 e-103
Alignment gi|NP_005972.1| tetraspanin-31 [Homo sapiens]. 236 3e-62
Alignment gi|NP_001771.1| CD63 antigen isoform A [Homo sapiens]. 57 4e-08
Alignment gi|NP_001035123.1| CD63 antigen isoform B [Homo sapiens]. 55 2e-07
Alignment gi|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens]. 54 3e-07
Alignment gi|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens]. 54 3e-07
Alignment gi|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens]. 54 3e-07
Alignment gi|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens]. 54 3e-07
Alignment gi|NP_001020405.1| tetraspanin-4 isoform a [Homo sapiens]. 54 3e-07
Alignment gi|NP_003262.1| tetraspanin-4 isoform a [Homo sapiens]. 54 3e-07
>ref|NP_055214.1| tetraspanin-13 [Homo sapiens].
Length = 204
Score = 373 bits (958), Expect = e-103
Identities = 183/204 (89%), Positives = 187/204 (91%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKNCLCA IGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVGWNNTASARN 630
LVGLIGAVKHHQVLLFFYMIILLLVFI QFSVSCACLALNQ QQ QLLEVGWNNTASARN
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTASARN 120
Query: 631 DIQRNLNCCGFRRLNPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGLFFSFTE 810
DIQRNLNCCGFR +NPNDTCLASC+KS HSCSPCAPIIG+YAGEVL+FVGGIGLFFSFTE
Sbjct: 121 DIQRNLNCCGFRSVNPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGIGLFFSFTE 180
Query: 811 ILGVWLTYRYRNQKDPRANPSAFL 882
ILGVWLTYRYRNQKDPRANPSAFL
Sbjct: 181 ILGVWLTYRYRNQKDPRANPSAFL 204
>ref|NP_005972.1| tetraspanin-31 [Homo sapiens].
Length = 210
Score = 236 bits (603), Expect = 3e-62
Identities = 115/210 (54%), Positives = 145/210 (69%), Gaps = 6/210 (2%)
Frame = +1
Query: 271 MVCGGFACSKNCLCAXXXXXXXXXXXXIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 450
MVCGGFACSKN LCA IG+AAWG G GL+SS+ ++G VIAVG+FL LIA
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVSLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 451 LVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLALNQGQQSQLLEVG-WNNTASAR 627
+ GL+GAV HHQVLLFFYMIIL LVFIFQF +SC+CLA+N+ +Q+ ++ W + R
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTR 120
Query: 628 NDIQRNLNCCGFRRL-----NPNDTCLASCMKSRHSCSPCAPIIGKYAGEVLQFVGGIGL 792
++++R+ +CCG L D C A C +C C K++ E L+ +GG+GL
Sbjct: 121 DELERSFDCCGLFNLTTLYQQDYDFCTAICKSQSPTCQMCGEKFLKHSDEALKILGGVGL 180
Query: 793 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 882
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>ref|NP_001771.1| CD63 antigen isoform A [Homo sapiens].
Length = 238
Score = 57.0 bits (136), Expect = 4e-08
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 39/196 (19%)
Frame = +1
Query: 352 IGIAAWGIGFGLISSLRVVG----------VVIAVGIFLFLIALVGLIGAVKHHQVLLFF 501
+G+ A G+G L+ S ++ V+IAVG+FLFL+A VG GA K + L+
Sbjct: 26 VGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVAFVGCCGACKENYCLMIT 85
Query: 502 YMIILLLVFIFQFSVSCA--------CLALNQGQQSQLLEVGWNN-TASARNDIQRNLNC 654
+ I L L+ + + + + A N + Q+ NN TAS + +Q + C
Sbjct: 86 FAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASILDRMQADFKC 145
Query: 655 CG---------FRRLNPNDTCLASCMKSRHSC-----------SPCAPIIGKYAGEVLQF 774
CG ++ N + C+ C C IG + + +
Sbjct: 146 CGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLV 205
Query: 775 VGGIGLFFSFTEILGV 822
V L +F E+LG+
Sbjct: 206 VAAAALGIAFVEVLGI 221
>ref|NP_001035123.1| CD63 antigen isoform B [Homo sapiens].
Length = 236
Score = 55.1 bits (131), Expect = 2e-07
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Frame = +1
Query: 352 IGIAAWGIGFGLISSLRVVG----------VVIAVGIFLFLIALVGLIGAVKHHQVLLFF 501
+G+ A G+G L+ S ++ V+IAVG+FLFL+A VG GA K + L+
Sbjct: 26 VGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVAFVGCCGACKENYCLMIT 85
Query: 502 YMIILLLVFIFQFSVSCA--------CLALNQGQQSQLLEVGWNN-TASARNDIQRNLNC 654
+ I L L+ + + + + A N + Q+ NN TAS + +Q + C
Sbjct: 86 FAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASILDRMQADFKC 145
Query: 655 CG 660
CG
Sbjct: 146 CG 147
>ref|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG +GA+K ++ LL + ++LLLVF+ + +++ A
Sbjct: 50 SLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>ref|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG +GA+K ++ LL + ++LLLVF+ + +++ A
Sbjct: 50 SLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>ref|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG +GA+K ++ LL + ++LLLVF+ + +++ A
Sbjct: 50 SLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>ref|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG +GA+K ++ LL + ++LLLVF+ + +++ A
Sbjct: 50 SLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>ref|NP_001020405.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG +GA+K ++ LL + ++LLLVF+ + +++ A
Sbjct: 50 SLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>ref|NP_003262.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Frame = +1
Query: 394 SLRVVGVVIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIFQFSVSCACLA--- 564
SL ++I G F+ I VG +GA+K ++ LL + ++LLLVF+ + +++ A
Sbjct: 50 SLSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTD 109
Query: 565 -LNQGQQSQLLE----------VGWNNTASARNDIQRNLNCCG-------FRRLNPNDTC 690
+++ Q L + VG N S IQ + CCG F N
Sbjct: 110 KIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVP 166
Query: 691 LASCMKSRHSC----------SPCAPIIGKYAGEVLQFVGGIGLFFSFTEILGV 822
+ C++ SC +PC + + E L VG GL + +ILG+
Sbjct: 167 DSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,665,936
Number of extensions: 1213068
Number of successful extensions: 5533
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5378
Number of HSP's successfully gapped: 10
Length of query: 458
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,802,980
Effective search space: 5210648960
Effective search space used: 5210648960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008493
(1375 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1049 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1049 bits (529), Expect = 0.0
Identities = 549/553 (99%), Gaps = 2/553 (0%)
Strand = Plus / Minus
Query: 809 agatcctgggtgtttggctgacctacagatacaggaaccagaaagatcctcgtgctaatc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94865206 agatcctgggtgtttggctgacctacagatacaggaaccagaaagatcctcgtgctaatc 94865147
Query: 869 ctagcgcattcctttgatgagaaaacaagaacaatgtttcatattctcatcttgtacact 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94865146 ctagcgcattcctttgatgagaaaacaagaacaatgtttcatattctcatcttgtacact 94865087
Query: 929 tcctctaactttacgtttaagctaatttgcctgttaaaggaaacagtatctgaaaaacta 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94865086 tcctctaactttacgtttaagctaatttgcctgttaaaggaaacagtatctgaaaaacta 94865027
Query: 989 cgttattgacagtggaattatatatttttactttatgtttctctaaatgtttatcatttg 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94865026 cgttattgacagtggaattatatatttttactttatgtttctctaaatgtttatcatttg 94864967
Query: 1049 tccattgctgagaaaaatctgaaacttgtggtctcctctgtacctcagtggtacctgtaa 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94864966 tccattgctgagaaaaatctgaaacttgtggtctcctctgtacctcagtggtacctgtaa 94864907
Query: 1109 tctcctatattaacagtgtctggcactgtccactgttgcctttcttagcgtttttacctg 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94864906 tctcctatattaacagtgtctggcactgtccactgttgcctttcttagcgtttttacctg 94864847
Query: 1169 cagagaaactttgtatggcactattgtgttgattatattgtgaatctaaatgtgcatctc 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94864846 cagagaaactttgtatggcactattgtgttgattatattgtgaatctaaatgtgcatctc 94864787
Query: 1229 actggaatgattaa-tgtatgtggcattgtgctgtgtcgatagtttctactggaaaaaag 1287
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 94864786 actggaatgattaattgtatgtggcattgtgctgtgtcgatagttcctactggaaaaaag 94864727
Query: 1288 agctgaagtgtattaaagctggaaagtatgattctattata-taagttcagtaaggaaaa 1346
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 94864726 agctgaagtgtattaaagctggaaagtatgattctattatattaagttcagtaagggaaa 94864667
Query: 1347 cctcaattccccc 1359
|||||||||||||
Sbjct: 94864666 cctcaattccccc 94864654
Score = 335 bits (169), Expect = 4e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 333 gttggttagtttgttgctaattggaattgctgcctggggcattggctttgggctgatttc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94841375 gttggttagtttgttgctaattggaattgctgcctggggcattggctttgggctgatttc 94841434
Query: 393 cagtctccgagtggtcggcgtggtcatcgcagtgggaatcttcttgttcctgatcgcatt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94841435 cagtctccgagtggtcggcgtggtcatcgcagtgggaatcttcttgttcctgatcgcatt 94841494
Query: 453 agtggggctgatcggagccgtaaaacaccatcaagtgttgcttttcttt 501
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94841495 agtggggctgatcggagccgtaaaacaccatcaagtgttgcttttcttt 94841543
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 581 agagtcagcttctggaagttggttggaacaacacagcaagtgctcgaaatgacatccaga 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94873880 agagtcagcttctggaagttggttggaacaacacagcaagtgctcgaaatgacatccaga 94873821
Query: 641 gaaatttaaactgctgtgggttccgaaggttaaacccaaatgacacctgtctggct 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94873820 gaaatttaaactgctgtgggttccgaaggttaaacccaaatgacacctgtctggct 94873765
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 697 agctgtatgaaaagcagacactcgtgctcaccatgtgctccgataataggaaaatatgct 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94872473 agctgtatgaaaagcagacactcgtgctcaccatgtgctccgataataggaaaatatgct 94872414
Query: 757 ggagaggttttgcaatttgttggtggcattggcctcttcttcagttttacagag 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94872413 ggagaggttttgcaatttgttggtggcattggcctcttcttcagttttacagag 94872360
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 502 tacatgattattctcttacttgtatttatttttcagttttctgtatcatgtgcttgttta 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94842237 tacatgattattctcttacttgtatttatttttcagttttctgtatcatgtgcttgttta 94842296
Query: 562 gccctgaatcaggggcaacag 582
|||||||||||||||||||||
Sbjct: 94842297 gccctgaatcaggggcaacag 94842317
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,044,705
Number of extensions: 354
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 5
Length of query: 1375
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1354
Effective length of database: 2,808,413,156
Effective search space: 3802591413224
Effective search space used: 3802591413224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)