Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008495
(1243 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039986.1| PDZK1-interacting protein 1 [Bos taurus]. 166 3e-41
>ref|NP_001039986.1| PDZK1-interacting protein 1 [Bos taurus].
Length = 114
Score = 166 bits (421), Expect = 3e-41
Identities = 81/114 (71%), Positives = 88/114 (77%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
MS LSLV+L LLMA+PPASCQQG GNLQPWMQG NHFWCQE+
Sbjct: 1 MSVLSLVVLSLLMALPPASCQQGRGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEKPA 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
P+NMVMT GNKADGIL+GT+GKYSSMAASFRSSEHENAYEN EEEG+V STPM
Sbjct: 61 PINMVMTIGNKADGILVGTDGKYSSMAASFRSSEHENAYENIPEEEGKVCSTPM 114
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,871,003
Number of extensions: 1618181
Number of successful extensions: 5394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5383
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,207,134
Effective search space: 4390004406
Effective search space used: 4390004406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008495
(1243 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532589.2| PREDICTED: similar to PDZK1 interacting protein... 159 7e-39
>ref|XP_532589.2| PREDICTED: similar to PDZK1 interacting protein 1 [Canis
familiaris].
Length = 114
Score = 159 bits (401), Expect = 7e-39
Identities = 79/114 (69%), Positives = 84/114 (73%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
MSAL+L+ILGL AVPPASCQQGLGNLQPWMQG N FWCQEE E
Sbjct: 1 MSALTLLILGLFTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNRFWCQEEPE 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
P+NMVMT NKADGIL GT+G+YS AASFRSSEHENAYEN EEEG V STPM
Sbjct: 61 PVNMVMTIANKADGILGGTDGRYSLTAASFRSSEHENAYENVPEEEGNVRSTPM 114
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,922,797
Number of extensions: 1191778
Number of successful extensions: 5290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5279
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 309
Effective length of database: 15,374,224
Effective search space: 4750635216
Effective search space used: 4750635216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008495
(1243 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001769.1| PDZK1-interacting protein 1 [Sus scrofa]. 194 7e-50
Alignment gi|XP_003361608.1| PREDICTED: PDZK1-interacting protein 1-like ... 165 6e-41
>ref|NP_001001769.1| PDZK1-interacting protein 1 [Sus scrofa].
Length = 114
Score = 194 bits (494), Expect = 7e-50
Identities = 96/114 (84%), Positives = 97/114 (85%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
MSALSLVILGLLMAVPPASCQQGLGNLQPWMQG NHFWCQEERE
Sbjct: 1 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAINHFWCQEERE 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
PMNMVMTTGNKADGILIGTEGKYSSMAASFRS+EHENAYENTSEEEGRVHSTPM
Sbjct: 61 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSNEHENAYENTSEEEGRVHSTPM 114
>ref|XP_003361608.1| PREDICTED: PDZK1-interacting protein 1-like [Sus scrofa].
Length = 114
Score = 165 bits (417), Expect = 6e-41
Identities = 83/114 (72%), Positives = 85/114 (74%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
MS LSLVILGLLMAVPP SCQQGLGNLQPWMQG NHFWCQEE E
Sbjct: 1 MSVLSLVILGLLMAVPPGSCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPE 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
P+NMVMT GNKADGIL GT+GKYSS AASFRSSEHENA EN E RVHSTPM
Sbjct: 61 PVNMVMTMGNKADGILAGTDGKYSSRAASFRSSEHENAPENIPEAGXRVHSTPM 114
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,278,933
Number of extensions: 1766522
Number of successful extensions: 3308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3288
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,829,335
Effective search space: 2763581855
Effective search space used: 2763581855
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008495
(1243 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158029.1| PDZK1-interacting protein 1 isoform 1 [Mus m... 160 1e-39
Alignment gi|NP_001158030.1| PDZK1-interacting protein 1 isoform 2 [Mus m... 151 9e-37
Alignment gi|NP_080294.1| PDZK1-interacting protein 1 isoform 2 [Mus musc... 151 9e-37
>ref|NP_001158029.1| PDZK1-interacting protein 1 isoform 1 [Mus musculus].
Length = 181
Score = 160 bits (406), Expect = 1e-39
Identities = 84/147 (57%), Positives = 97/147 (65%)
Frame = +3
Query: 456 SPGCFQQTPTDPTAAPGAQVPVAREKTQELPAAMSALSLVILGLLMAVPPASCQQGLGNL 635
SP QTP +++ + E Q LPAAM A SL++LGLL V PASCQQGLGNL
Sbjct: 36 SPADLIQTPQTSSSSRSQKHQQWTEVLQ-LPAAMLAFSLLVLGLLAEVAPASCQQGLGNL 94
Query: 636 QPWMQGXXXXXXXXXXXXXXXXXNHFWCQEEREPMNMVMTTGNKADGILIGTEGKYSSMA 815
QPWMQG NHFWCQEE EP + VM GNKADG+L+G +G+YSSMA
Sbjct: 95 QPWMQGLIAVAVFLVLVAIVFAVNHFWCQEEPEPGSTVMIIGNKADGVLVGMDGRYSSMA 154
Query: 816 ASFRSSEHENAYENTSEEEGRVHSTPM 896
+ FRSSEH+NAYEN EEEGRV STPM
Sbjct: 155 SGFRSSEHKNAYENVLEEEGRVRSTPM 181
>ref|NP_001158030.1| PDZK1-interacting protein 1 isoform 2 [Mus musculus].
Length = 114
Score = 151 bits (382), Expect = 9e-37
Identities = 73/114 (64%), Positives = 82/114 (71%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
M A SL++LGLL V PASCQQGLGNLQPWMQG NHFWCQEE E
Sbjct: 1 MLAFSLLVLGLLAEVAPASCQQGLGNLQPWMQGLIAVAVFLVLVAIVFAVNHFWCQEEPE 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
P + VM GNKADG+L+G +G+YSSMA+ FRSSEH+NAYEN EEEGRV STPM
Sbjct: 61 PGSTVMIIGNKADGVLVGMDGRYSSMASGFRSSEHKNAYENVLEEEGRVRSTPM 114
>ref|NP_080294.1| PDZK1-interacting protein 1 isoform 2 [Mus musculus].
Length = 114
Score = 151 bits (382), Expect = 9e-37
Identities = 73/114 (64%), Positives = 82/114 (71%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
M A SL++LGLL V PASCQQGLGNLQPWMQG NHFWCQEE E
Sbjct: 1 MLAFSLLVLGLLAEVAPASCQQGLGNLQPWMQGLIAVAVFLVLVAIVFAVNHFWCQEEPE 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
P + VM GNKADG+L+G +G+YSSMA+ FRSSEH+NAYEN EEEGRV STPM
Sbjct: 61 PGSTVMIIGNKADGVLVGMDGRYSSMASGFRSSEHKNAYENVLEEEGRVRSTPM 114
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,240,610
Number of extensions: 958054
Number of successful extensions: 4146
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4117
Number of HSP's successfully gapped: 3
Length of query: 414
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 310
Effective length of database: 12,493,815
Effective search space: 3873082650
Effective search space used: 3873082650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008495
(1243 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005755.1| PDZK1-interacting protein 1 [Homo sapiens]. 171 2e-42
>ref|NP_005755.1| PDZK1-interacting protein 1 [Homo sapiens].
Length = 114
Score = 171 bits (432), Expect = 2e-42
Identities = 81/114 (71%), Positives = 90/114 (78%)
Frame = +3
Query: 555 MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGXXXXXXXXXXXXXXXXXNHFWCQEERE 734
MSALSL+ILGLL AVPPASCQQGLGNLQPWMQG NHFWCQEE E
Sbjct: 1 MSALSLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPE 60
Query: 735 PMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM 896
P +M++T GNKADG+L+GT+G+YSSMAASFRSSEHENAYEN EEEG+V STPM
Sbjct: 61 PAHMILTVGNKADGVLVGTDGRYSSMAASFRSSEHENAYENVPEEEGKVRSTPM 114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,042,927
Number of extensions: 1136456
Number of successful extensions: 5122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5108
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,835,944
Effective search space: 4584306696
Effective search space used: 4584306696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008495
(1243 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 743 0.0
gb|GL894781.2| Sus scrofa unplaced genomic scaffold ChrUScaf2665 178 5e-42
>Sscrofa_Chr06
|| Length = 157765593
Score = 743 bits (375), Expect = 0.0
Identities = 392/400 (98%)
Strand = Plus / Plus
Query: 822 ttcaggtccagtgagcatgagaatgcctatgagaacacctcggaggaggagggcagggtt 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079073 ttcaggtccagtgagcatgagaatgcctatgagaacacctcggaggaggagggcagggtt 119079132
Query: 882 cacagcaccccgatgtgacccctgcttgcctgtgatggatggcctgcttcacccagcccc 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079133 cacagcaccccgatgtgacccctgcttgcctgtgatggatggcctgcttcacccagcccc 119079192
Query: 942 ctccttctctataccagaactgcagtaaggagccaaatcctccaacccccacatctgcct 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079193 ctccttctctataccagaactgcagtaaggagccaaatcctccaacccccacatctgcct 119079252
Query: 1002 tgtcctagccaaggtcagagctcagactgtgtccaggctggggctcagctgtggccctgg 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079253 tgtcctagccaaggtcagagctcagactgtgtccaggctggggctcagctgtggccctgg 119079312
Query: 1062 ggtcctnnnnnnntggtctcctacccaattcaactcagaagaccctccatcctgactcac 1121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079313 ggtcctgggggggtggtctcctacccaattcaactcagaagaccctccatcctgactcac 119079372
Query: 1122 atctcctgcgccctgaccctggcaacagcccctatttctgtgaaataaagacaaggtgta 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079373 atctcctgcgccctgaccctggcaacagcccctatttctgtgaaataaagacaaggtgta 119079432
Query: 1182 cttctgggtctgagtcccagggcccagcccctcagacttc 1221
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 119079433 cttctgggtctgagtcccagggcccagcccctcaggcttc 119079472
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 452 actgagcccaggctgctttcagcagacaccgacagaccccacagcagctccaggagccca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119074064 actgagcccaggctgctttcagcagacaccgacagaccccacagcagctccaggagccca 119074123
Query: 512 ggttccagtggccagagagaagacccaggagctgcctgcagccatgtcagctctcagcct 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119074124 ggttccagtggccagagagaagacccaggagctgcctgcagccatgtcagctctcagcct 119074183
Query: 572 ggtcattctgggcctgcttatggcagtgccacctgccagctgtcagcaagg 622
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119074184 ggtcattctgggcctgcttatggcagtgccacctgccagctgtcagcaagg 119074234
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 620 aggcctggggaacctgcagccctggatgcagggccttattgccgtggctgtgttcctggt 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119076870 aggcctggggaacctgcagccctggatgcagggccttattgccgtggctgtgttcctggt 119076929
Query: 680 cctcgtcgcaattgcttttgctatcaaccacttctggtgccaggaagagcgg 731
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119076930 cctcgtcgcaattgcttttgctatcaaccacttctggtgccaggaagagcgg 119076981
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 730 gggagcccatgaacatggtcatgaccactggaaacaaagcagacgggatcctgattggaa 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119078508 gggagcccatgaacatggtcatgaccactggaaacaaagcagacgggatcctgattggaa 119078567
Query: 790 ctgagggcaagtactcctcgatggctgccagcttcaggt 828
|||||||||||||||||||||||||||||||||||||||
Sbjct: 119078568 ctgagggcaagtactcctcgatggctgccagcttcaggt 119078606
Score = 174 bits (88), Expect = 7e-41
Identities = 140/157 (89%), Gaps = 4/157 (2%)
Strand = Plus / Plus
Query: 470 tcagcagacaccgacagaccccacagcagctccaggagcccaggttccagtggccagaga 529
|||||||||| ||||||||||||||||| |||||||||||||| |||||| || ||||
Sbjct: 151864132 tcagcagacagcgacagaccccacagcacctccaggagcccagattccagcagctggaga 151864191
Query: 530 gaagaccc----aggagctgcctgcagccatgtcagctctcagcctggtcattctgggcc 585
|||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 151864192 gaagaccccggcaggagccacctgcagccatgtcagtcctcagcctggtcattctgggcc 151864251
Query: 586 tgcttatggcagtgccacctgccagctgtcagcaagg 622
|||| |||||||||||||||| |||||||||||||||
Sbjct: 151864252 tgctcatggcagtgccacctggcagctgtcagcaagg 151864288
>gb|GL894781.2| Sus scrofa unplaced genomic scaffold ChrUScaf2665
Length = 75836
Score = 178 bits (90), Expect = 5e-42
Identities = 105/110 (95%)
Strand = Plus / Minus
Query: 620 aggcctggggaacctgcagccctggatgcagggccttattgccgtggctgtgttcctggt 679
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6892 aggcctggggaacctgcagccctggatgcagggcctcattgccgtggctgtgttcctggt 6833
Query: 680 cctcgtcgcaattgcttttgctatcaaccacttctggtgccaggaagagc 729
||| ||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 6832 ccttgtcgcgattgcctttgctgtcaaccacttctggtgccaggaagagc 6783
Score = 174 bits (88), Expect = 7e-41
Identities = 140/157 (89%), Gaps = 4/157 (2%)
Strand = Plus / Minus
Query: 470 tcagcagacaccgacagaccccacagcagctccaggagcccaggttccagtggccagaga 529
|||||||||| ||||||||||||||||| |||||||||||||| |||||| || ||||
Sbjct: 7794 tcagcagacagcgacagaccccacagcacctccaggagcccagattccagcagctggaga 7735
Query: 530 gaagaccc----aggagctgcctgcagccatgtcagctctcagcctggtcattctgggcc 585
|||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 7734 gaagaccccggcaggagccacctgcagccatgtcagtcctcagcctggtcattctgggcc 7675
Query: 586 tgcttatggcagtgccacctgccagctgtcagcaagg 622
|||| |||||||||||||||| |||||||||||||||
Sbjct: 7674 tgctcatggcagtgccacctggcagctgtcagcaagg 7638
Score = 105 bits (53), Expect = 6e-20
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 732 gagcccatgaacatggtcatgaccactggaaacaaagcagacgggatcctgattggaact 791
|||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 5065 gagcccgtgaacatggtcatgaccatgggaaacaaagcagacgggatcctggcaggaact 5006
Query: 792 gagggcaagtactcctcgatggctgccagcttcaggt 828
|| ||||| |||||||| | ||| |||||||||||||
Sbjct: 5005 gacggcaaatactcctccagggcggccagcttcaggt 4969
Score = 87.7 bits (44), Expect = 1e-14
Identities = 83/95 (87%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 822 ttcaggtccagtgagcatgagaatgcctatgagaacacctcggaggaggagggcagggtt 881
||||||||||||||||||||||| ||| |||||||| | |||||| || |||||||
Sbjct: 4279 ttcaggtccagtgagcatgagaacgcccctgagaacatcccggaggcgggcngcagggtc 4220
Query: 882 cacagcaccccgatgtgacccctgcttgcctgtga 916
|||||||||||||||||| ||||||| ||||||||
Sbjct: 4219 cacagcaccccgatgtga-ccctgctggcctgtga 4186
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,849,117
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 9
Length of query: 1243
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1222
Effective length of database: 2,808,413,156
Effective search space: 3431880876632
Effective search space used: 3431880876632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)