Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008497
(1210 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030545.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dio... 345 6e-95
>ref|NP_001030545.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Bos taurus].
Length = 179
Score = 345 bits (884), Expect = 6e-95
Identities = 159/178 (89%), Positives = 171/178 (96%)
Frame = +3
Query: 105 MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN 284
MV+AWY+D++ADDPRLPHR EPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIR ERN
Sbjct: 1 MVEAWYIDDAADDPRLPHRAEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRKERN 60
Query: 285 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 464
YSW+DIITI +DKLPNYEEKIK F+EEHLHLD+EIRYILDGSGYFDVRDQ+DRWIRI ME
Sbjct: 61 YSWVDIITISKDKLPNYEEKIKMFFEEHLHLDEEIRYILDGSGYFDVRDQEDRWIRISME 120
Query: 465 KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFLAQS 638
KGD+ITLPAGIYHRFTLDE+NYVKAMRLFVGDPVWTPYNRP+DHLEAR QYL FLAQS
Sbjct: 121 KGDMITLPAGIYHRFTLDEKNYVKAMRLFVGDPVWTPYNRPSDHLEARTQYLEFLAQS 178
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,660,214
Number of extensions: 1251864
Number of successful extensions: 5279
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5261
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,207,134
Effective search space: 4233725932
Effective search space used: 4233725932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008497
(1210 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851066.1| PREDICTED: similar to membrane-type 1 matrix me... 264 1e-70
>ref|XP_851066.1| PREDICTED: similar to membrane-type 1 matrix metalloproteinase
cytoplasmic tail binding protein-1, partial [Canis
familiaris].
Length = 139
Score = 264 bits (674), Expect = 1e-70
Identities = 120/138 (86%), Positives = 133/138 (96%)
Frame = +3
Query: 225 LDADKYENDPELEKIRNERNYSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILD 404
LDADK+ENDPELEKIR ERNYSWMDIITI +DKLPNYEEK++ FYEEHLH+D+EIRYILD
Sbjct: 1 LDADKHENDPELEKIRKERNYSWMDIITISKDKLPNYEEKLRMFYEEHLHVDEEIRYILD 60
Query: 405 GSGYFDVRDQDDRWIRIFMEKGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNR 584
GSGYFDVRD+D++WIRIFMEKGD+ITLPAGIYHRFTLDE+NYVKAMRLFVG PVWT YNR
Sbjct: 61 GSGYFDVRDKDEKWIRIFMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGQPVWTAYNR 120
Query: 585 PADHLEARGQYLRFLAQS 638
PADHLEARGQY+RFLAQ+
Sbjct: 121 PADHLEARGQYVRFLAQT 138
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,654,084
Number of extensions: 1292378
Number of successful extensions: 5749
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5736
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 298
Effective length of database: 15,374,224
Effective search space: 4581518752
Effective search space used: 4581518752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008497
(1210 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230627.1| acireductone dioxygenase 1 [Sus scrofa]. 381 e-106
Alignment gi|XP_003356715.1| PREDICTED: LOW QUALITY PROTEIN: 1,2-dihydrox... 170 1e-42
>ref|NP_001230627.1| acireductone dioxygenase 1 [Sus scrofa].
Length = 179
Score = 381 bits (978), Expect = e-106
Identities = 179/179 (100%), Positives = 179/179 (100%)
Frame = +3
Query: 105 MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN 284
MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN
Sbjct: 1 MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN 60
Query: 285 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 464
YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME
Sbjct: 61 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 120
Query: 465 KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFLAQST 641
KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFLAQST
Sbjct: 121 KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFLAQST 179
>ref|XP_003356715.1| PREDICTED: LOW QUALITY PROTEIN:
1,2-dihydroxy-3-keto-5-methylthiopentene
dioxygenase-like [Sus scrofa].
Length = 177
Score = 170 bits (431), Expect = 1e-42
Identities = 89/176 (50%), Positives = 112/176 (63%)
Frame = +3
Query: 105 MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN 284
MVQ WYMDES DD P P+ PV +EQL GVLYWKL +D ELEKI E+
Sbjct: 1 MVQTWYMDESQDDLTWPCGLVPSFPVCMEQLHWAGVLYWKLT-----DDLELEKICKEKX 55
Query: 285 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 464
YSWMD+I IC+DKLPNYEEK K F EH + + ++ +I+DG+GY D RD +D WI+IFME
Sbjct: 56 YSWMDLINICKDKLPNYEEKFKMFCSEHWYQEXKVCHIMDGTGYADERDXEDLWIQIFME 115
Query: 465 KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFLA 632
KG+ TLPAG+YH F ++ WT Y+ ADH +GQYL+ L+
Sbjct: 116 KGNGATLPAGVYH-FHIE---------------CWTVYSWLADHFHXQGQYLKLLS 155
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,986,014
Number of extensions: 828093
Number of successful extensions: 3350
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3339
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,829,335
Effective search space: 2666459170
Effective search space used: 2666459170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008497
(1210 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598813.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxyg... 321 6e-88
>ref|NP_598813.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Mus
musculus].
Length = 179
Score = 321 bits (823), Expect = 6e-88
Identities = 147/175 (84%), Positives = 160/175 (91%)
Frame = +3
Query: 105 MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN 284
MVQAWYMDES DPR PHR +P RPV LEQLR LGVLYWKLDADKYENDPELEKIR RN
Sbjct: 1 MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRN 60
Query: 285 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 464
YSWMDIITIC+D LPNYEEKIK F+EEHLHLD+EIRYIL+GSGYFDVRD++D+WIRI ME
Sbjct: 61 YSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISME 120
Query: 465 KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFL 629
KGD+ITLPAGIYHRFTLDE+NYVKAMRLFVG+PVWTPYNRPADH +AR QY+ FL
Sbjct: 121 KGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTPYNRPADHFDARVQYMSFL 175
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,217,608
Number of extensions: 1027663
Number of successful extensions: 3930
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3918
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 299
Effective length of database: 12,493,815
Effective search space: 3735650685
Effective search space used: 3735650685
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008497
(1210 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060739.2| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxyg... 339 3e-93
>ref|NP_060739.2| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Homo
sapiens].
Length = 179
Score = 339 bits (870), Expect = 3e-93
Identities = 153/178 (85%), Positives = 168/178 (94%)
Frame = +3
Query: 105 MVQAWYMDESADDPRLPHRTEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRNERN 284
MVQAWYMD++ DPR PHR +P RPVGLEQLRRLGVLYWKLDADKYENDPELEKIR ERN
Sbjct: 1 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERN 60
Query: 285 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 464
YSWMDIITIC+DKLPNYEEKIK FYEEHLHLDDEIRYILDGSGYFDVRD++D+WIRIFME
Sbjct: 61 YSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFME 120
Query: 465 KGDLITLPAGIYHRFTLDEQNYVKAMRLFVGDPVWTPYNRPADHLEARGQYLRFLAQS 638
KGD++TLPAGIYHRFT+DE+NY KAMRLFVG+PVWT YNRPADH EARGQY++FLAQ+
Sbjct: 121 KGDMVTLPAGIYHRFTVDEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVKFLAQT 178
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,477,137
Number of extensions: 1242451
Number of successful extensions: 4969
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4954
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,835,944
Effective search space: 4421111312
Effective search space used: 4421111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008497
(1210 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 837 0.0
Sscrofa_Chr06 72 8e-10
Sscrofa_Chr07 60 3e-06
>Sscrofa_Chr03
|| Length = 144787322
Score = 837 bits (422), Expect = 0.0
Identities = 463/483 (95%)
Strand = Plus / Plus
Query: 522 cagaactacgtgaaggccatgcggctgttcgtgggcgaccccgtgtggacaccgtacaac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140468600 cagaactacgtgaaggccatgcggctgttcgtgggcgaccccgtgtggacaccgtacaac 140468659
Query: 582 cggccagccgaccacctggaggcccgcgggcagtacctgcggttcctggcgcagtccacg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140468660 cggccagccgaccacctggaggcccgcgggcagtacctgcggttcctggcgcagtccacg 140468719
Query: 642 tagcccgccccggcctcctgctgcaggtccgctgtggtggctgcaggaagtcccctgttt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 140468720 tagcccgccccggcctcctgctgcaggtccgctgtggtggctgcaggaagtcccccgttt 140468779
Query: 702 tctcctttttctggctgcagccgaggctnnnnnnncttccctctcaggattgtttgatca 761
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 140468780 tctcctttttctggctgcagccgaggctgggggggcttccctctcaggattgtttgatca 140468839
Query: 762 gagtgcgcgctgatgactgactcgtccccggcagcatctgggcagatctgccgcttttct 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140468840 gagtgcgcgctgatgactgactcgtccccggcagcatctgggcagatctgccgcttttct 140468899
Query: 822 ctggctcgggatcggtgggtcggtggccctgggtccgctggtgccttcagctctaaccca 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140468900 ctggctcgggatcggtgggtcggtggccctgggtccgctggtgccttcagctctaaccca 140468959
Query: 882 gcgagtttgtcgcctcgaacgccgacgcttcgctgccccgtgactcttggcctctaagca 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140468960 gcgagtttgtcgcctcgaacgccgacgcttcgctgccccgtgactcttggcctctaagca 140469019
Query: 942 gatgcccatccatcaaggccaccnnnnnnnnnnnngggggtgacagcagtgacaggccct 1001
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 140469020 gatgcccatccatcaaggccacctgtgtgtgtgtggggggtgacagcagtgacaggccct 140469079
Query: 1002 gcc 1004
|||
Sbjct: 140469080 gcc 140469082
Score = 381 bits (192), Expect = e-103
Identities = 216/224 (96%)
Strand = Plus / Plus
Query: 1 ggagaccggggcgttgcggccccctccaacgccccgggtgcgggcctgggctcagagccg 60
||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 140460807 ggagaccggggcggggcggcccccgcgaacgccccgggtgcgggcctgggctcagagccg 140460866
Query: 61 cccggagcaggtcgaggtccggtcgcggcggccccggctccgccatggtgcaggcctggt 120
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 140460867 cccggagcaggccgaggtccggtcgcggcgcccccggctccgccatggtgcaggcctggt 140460926
Query: 121 acatggacgagtcggccgacgacccgcgactgccccaccgcacggagcccgcccgcccgg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 140460927 acatggacgagtcggccgacgacccgcggctgccccaccgcacggagcccgcccgcccgg 140460986
Query: 181 tcggcctggagcagctgcgccggctcggcgtcctctactggaag 224
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 140460987 tcggcctggaccagctgcgccggctcggcgtcctctactggaag 140461030
Score = 361 bits (182), Expect = 6e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 343 agattaagacattttacgaggagcacctgcacctggatgacgagatccgctacatcctgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140467686 agattaagacattttacgaggagcacctgcacctggatgacgagatccgctacatcctgg 140467745
Query: 403 acggcagtggctacttcgacgtgagagaccaggacgaccggtggatccggatcttcatgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140467746 acggcagtggctacttcgacgtgagagaccaggacgaccggtggatccggatcttcatgg 140467805
Query: 463 agaagggggacttgatcacccttcccgccggcatctaccaccgcttcacgctggacgagc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140467806 agaagggggacttgatcacccttcccgccggcatctaccaccgcttcacgctggacgagc 140467865
Query: 523 ag 524
||
Sbjct: 140467866 ag 140467867
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 223 agctggatgctgacaaatatgagaatgatccagaattagagaaaatccgaaacgagagaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140463328 agctggatgctgacaaatatgagaatgatccagaattagagaaaatccgaaacgagagaa 140463387
Query: 283 actactcctggatggacataattaccatatgcagagacaaactaccaaattacgaggaga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140463388 actactcctggatggacataattaccatatgcagagacaaactaccaaattacgaggaga 140463447
Query: 343 ag 344
||
Sbjct: 140463448 ag 140463449
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1067 cgctcacttgctgatgccacttctctgttccagataaagtagcgccttaattttctgctt 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140469145 cgctcacttgctgatgccacttctctgttccagataaagtagcgccttaattttctgctt 140469204
Query: 1127 gcggcttggggttgccctgtatgtactacagcacattaaaatcacccccttcatgtaaac 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140469205 gcggcttggggttgccctgtatgtactacagcacattaaaatcacccccttcatgtaaac 140469264
Query: 1187 t 1187
|
Sbjct: 140469265 t 140469265
>Sscrofa_Chr06
|| Length = 157765593
Score = 71.9 bits (36), Expect = 8e-10
Identities = 85/101 (84%), Gaps = 4/101 (3%)
Strand = Plus / Minus
Query: 234 gacaaatatgagaatgatccagaattagagaaaatccgaaacgagagaaactactcctgg 293
||||||||||||||||||||||||| ||| ||| ||| ||| |||||||| | ||||
Sbjct: 135857111 gacaaatatgagaatgatccagaataagataaagtccaaaa----agaaactatttctgg 135857056
Query: 294 atggacataattaccatatgcagagacaaactaccaaatta 334
||| ||||||| || ||||||| ||| ||||||||| ||||
Sbjct: 135857055 atgcacataataactatatgcaaagataaactaccagatta 135857015
>Sscrofa_Chr07
|| Length = 134764511
Score = 60.0 bits (30), Expect = 3e-06
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 278 gagaaactactcctggatggacataattaccatatgcagagacaaactaccaaattacga 337
|||||| ||||||||||||||| |||| | |||||||| ||| ||| |||||||||| ||
Sbjct: 60595242 gagaaagtactcctggatggacctaataaacatatgcaaagataaattaccaaattatga 60595183
Query: 338 ggagaagattaaga 351
|| ||| ||||||
Sbjct: 60595182 agaaaagtttaaga 60595169
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,778,005
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 7
Length of query: 1210
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1189
Effective length of database: 2,808,413,156
Effective search space: 3339203242484
Effective search space used: 3339203242484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)