Animal-Genome cDNA 20110601C-008498


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008498
         (1039 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001094644.1| sestrin-1 [Bos taurus].                            63   5e-10

>ref|NP_001094644.1| sestrin-1 [Bos taurus].
          Length = 492

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLAT ANEAYTASL VSELL CKQCGGSRGQ+E
Sbjct: 1   MRLATAANEAYTASLAVSELLGCKQCGGSRGQDE 34


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,655,901
Number of extensions: 994532
Number of successful extensions: 5737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5664
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008498
         (1039 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_868419.1| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09
Alignment   gi|XP_868415.1| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09
Alignment   gi|XP_868413.1| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09
Alignment   gi|XP_868410.1| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09
Alignment   gi|XP_868405.1| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09
Alignment   gi|XP_868402.1| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09
Alignment   gi|XP_539077.2| PREDICTED: similar to Sestrin-1 (p53-regulated ...    59   8e-09

>ref|XP_868419.1| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 8 [Canis familiaris].
          Length = 482

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


>ref|XP_868415.1| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 7 [Canis familiaris].
          Length = 502

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


>ref|XP_868413.1| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 6 [Canis familiaris].
          Length = 491

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


>ref|XP_868410.1| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 5 [Canis familiaris].
          Length = 497

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


>ref|XP_868405.1| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 4 [Canis familiaris].
          Length = 485

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


>ref|XP_868402.1| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 3 [Canis familiaris].
          Length = 499

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


>ref|XP_539077.2| PREDICTED: similar to Sestrin-1 (p53-regulated protein PA26)
           isoform 1 [Canis familiaris].
          Length = 492

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA TAN AYTASL VSELL CKQCGG RGQ+E
Sbjct: 1   MRLAATANAAYTASLAVSELLGCKQCGGGRGQDE 34


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,959,377
Number of extensions: 990915
Number of successful extensions: 6321
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6190
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008498
         (1039 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003121385.2| PREDICTED: hypothetical protein LOC100154745...   258   3e-69
Alignment   gi|XP_003353326.1| PREDICTED: hypothetical protein LOC100626962...   151   7e-37

>ref|XP_003121385.2| PREDICTED: hypothetical protein LOC100154745 [Sus scrofa].
          Length = 165

 Score =  258 bits (660), Expect = 3e-69
 Identities = 123/142 (86%), Positives = 123/142 (86%)
 Frame = +2

Query: 80  PRHGGCSARPLLSPRRHAPGHNRERGVHGLTDRLGAAVLQAVWREPRPGGGIRVRDWAGG 259
           PRHGGCSARPLLSPRRHAPGHNRERGV GLTDRLGAAVLQAVWR PRPGGGIRVRDWAGG
Sbjct: 24  PRHGGCSARPLLSPRRHAPGHNRERGVPGLTDRLGAAVLQAVWRHPRPGGGIRVRDWAGG 83

Query: 260 RYRPSCLGYREVLPLPHLCTLTASESALPGGRPCSHLWVXXXXXXXXXXXXXXXQVKRRP 439
           RYRPSCLGYREVLPLPH C LTASESALPGGRPCSHLWV               QVKRRP
Sbjct: 84  RYRPSCLGYREVLPLPHFCPLTASESALPGGRPCSHLWVCRPARRGRRGLARAPQVKRRP 143

Query: 440 VVGGGCLPQKELRLQETAVPVI 505
           VVGGGCLPQKELRLQETAVPVI
Sbjct: 144 VVGGGCLPQKELRLQETAVPVI 165


>ref|XP_003353326.1| PREDICTED: hypothetical protein LOC100626962 [Sus scrofa].
          Length = 253

 Score =  151 bits (381), Expect = 7e-37
 Identities = 74/88 (84%), Positives = 74/88 (84%)
 Frame = +1

Query: 736 MTLCTAFTLVYKTICFVSELAFRESRFNILYFPEWLQIEHXXXXXXXXXXXXXXGFDLKG 915
           MTLCTAFTLVYKTICFVSELAFRESRFNILYFPEWLQIEH              GFDLKG
Sbjct: 1   MTLCTAFTLVYKTICFVSELAFRESRFNILYFPEWLQIEHRLKVTKTTLTRTLKGFDLKG 60

Query: 916 DEGERREIFIKFLIEIVICKYRLHSRNP 999
           DEGERREIFIKFLIEIVICKYRLHSRNP
Sbjct: 61  DEGERREIFIKFLIEIVICKYRLHSRNP 88


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,292,204
Number of extensions: 689399
Number of successful extensions: 3833
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3786
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008498
         (1039 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001013388.2| sestrin-1 isoform 2 [Mus musculus].                55   1e-07

>ref|NP_001013388.2| sestrin-1 isoform 2 [Mus musculus].
          Length = 492

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 25/34 (73%), Positives = 27/34 (79%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA  +NEAY ASL VSELL C QCGG RGQ+E
Sbjct: 1   MRLAAASNEAYAASLAVSELLSCHQCGGDRGQDE 34


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,619,962
Number of extensions: 795854
Number of successful extensions: 4182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4106
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008498
         (1039 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001186862.1| sestrin-1 isoform 2 [Homo sapiens].                52   9e-07

>ref|NP_001186862.1| sestrin-1 isoform 2 [Homo sapiens].
          Length = 492

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/34 (73%), Positives = 26/34 (76%)
 Frame = +3

Query: 129 MRLATTANEAYTASLTVSELLCCKQCGGSRGQEE 230
           MRLA  ANEAYTA L VS LL CKQCGG R Q+E
Sbjct: 1   MRLAAAANEAYTAPLAVSGLLGCKQCGGGRDQDE 34


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,154,424
Number of extensions: 956737
Number of successful extensions: 5347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5287
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008498
         (1039 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                        1213   0.0  

>Sscrofa_Chr01 
||          Length = 315321322

 Score = 1213 bits (612), Expect = 0.0
 Identities = 619/620 (99%), Gaps = 1/620 (0%)
 Strand = Plus / Plus

                                                                            
Query: 421      tcaggtgaagaggcggccagtggtgggagggggatgtttgccacagaaggagctgcggct 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417064 tcaggtgaagaggcggccagtggtgggagggggatgtttgccacagaaggagctgcggct 84417123

                                                                            
Query: 481      gcaagagacagctgtcccggtcatttaaatgcaagtctccaaagcgtcaataacgtggtc 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417124 gcaagagacagctgtcccggtcatttaaatgcaagtctccaaagcgtcaataacgtggtc 84417183

                                                                            
Query: 541      ttctgtacaagtctccacaagtcagcgagtgaacaaagctggagactgtgaacagcctgt 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417184 ttctgtacaagtctccacaagtcagcgagtgaacaaagctggagactgtgaacagcctgt 84417243

                                                                            
Query: 601      ggatttttctcctcactgccttgtcagaatattattcggtgaccctcactctctgcctcc 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417244 ggatttttctcctcactgccttgtcagaatattattcggtgaccctcactctctgcctcc 84417303

                                                                            
Query: 661      tactgaaaggaaaagaatacatttgagtcagttaaaagatgatgctgcctagaataagtg 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417304 tactgaaaggaaaagaatacatttgagtcagttaaaagatgatgctgcctagaataagtg 84417363

                                                                            
Query: 721      tgttctgccagctctatgacgttatgcacagcgttcactcttgtttataaaactatctgt 780
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417364 tgttctgccagctctatgacgttatgcacagcgttcactcttgtttataaaactatctgt 84417423

                                                                            
Query: 781      tttgtgtctgaattggccttcagagagagccgttttaacattttatattttcctgagtgg 840
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417424 tttgtgtctgaattggccttcagagagagccgttttaacattttatattttcctgagtgg 84417483

                                                                            
Query: 841      ttgcaaatagagcaccgtttgaaagttactaaaacaactttaactcgaacccttaaaggt 900
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417484 ttgcaaatagagcaccgtttgaaagttactaaaacaactttaactcgaacccttaaaggt 84417543

                                                                            
Query: 901      tttgatttaaaaggtgacgagggagaaagaagagaaatattcattaaatttttaattgaa 960
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84417544 tttgatttaaaaggtgacgagggagaaagaagagaaatattcattaaatttttaattgaa 84417603

                                                                            
Query: 961      atcgttatttgtaaatatcgacttcattcaagaaacccgtaaatacaa-gtaatttctct 1019
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 84417604 atcgttatttgtaaatatcgacttcattcaagaaacccgtaaatacaaggtaatttctct 84417663

                                    
Query: 1020     gcagcattgcccactaaaat 1039
                ||||||||||||||||||||
Sbjct: 84417664 gcagcattgcccactaaaat 84417683



 Score =  686 bits (346), Expect = 0.0
 Identities = 371/378 (98%), Gaps = 1/378 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttgtttgcgccgcccggcagtcagagcagactgaggcgcttcagctcagagcttcccggc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84416643 ttgtttgcgccgcccggcagtcagagcagactgaggcgcttcagctcagagcttcccggc 84416702

                                                                            
Query: 61       ctcgcagcgcttgcctcctcc-gcggcacggcggctgctctgcgcgaccgctgctgtccc 119
                ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 84416703 ctcccagcgcttgcctcctcccgcggcacggcggctgctctgcgcgaccgctgctgtccc 84416762

                                                                            
Query: 120      cgcgccgacatgcgcctggccacaaccgcgaacgaggcgtacacggcctcactgaccgtc 179
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 84416763 cgcgccgacatgcgcctggccacaaccgcgaacgaggcgtacccggcctcactgaccgtc 84416822

                                                                            
Query: 180      tcggagctgctgtgctgcaagcagtgtggcgggagccgcggccaggaggaggtatccggg 239
                |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 84416823 tcggagctgctgtgctgcaagcagtgtggcggcacccgcggccaggaggaggtatccggg 84416882

                                                                            
Query: 240      tgagggactgggcgggcgggcggtaccggccgagctgcctgggctacagggaggtcttgc 299
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84416883 tgagggactgggcgggcgggcggtaccggccgagctgcctgggctacagggaggtcttgc 84416942

                                                                            
Query: 300      cgcttccccacctttgcaccctaacggcttcggagagcgctctcccgggagggcgcccct 359
                ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84416943 cgcttccccacttttgccccctaacggcttcggagagcgctctcccgggagggcgcccct 84417002

                                  
Query: 360      gcagccacctctgggtct 377
                ||||||||||||||||||
Sbjct: 84417003 gcagccacctctgggtct 84417020


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,412,045
Number of extensions: 269
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 2
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)