Animal-Genome cDNA 20110601C-008507


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008507
         (940 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068749.1| suppressor of IKBKE 1 [Bos taurus].               347   7e-96
Alignment   gi|NP_001095617.1| FGFR1 oncogene partner 2 [Bos taurus].            177   1e-44

>ref|NP_001068749.1| suppressor of IKBKE 1 [Bos taurus].
          Length = 207

 Score =  347 bits (891), Expect = 7e-96
 Identities = 181/207 (87%), Positives = 185/207 (89%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61  IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           A DAEPVLKAHQSHSAEIE+QIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ        
Sbjct: 121 AADAEPVLKAHQSHSAEIENQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKEL 180

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QVRK++S+DT SQ IK
Sbjct: 181 RELLSISSESLQVRKESSVDTASQGIK 207


>ref|NP_001095617.1| FGFR1 oncogene partner 2 [Bos taurus].
          Length = 174

 Score =  177 bits (449), Expect = 1e-44
 Identities = 90/176 (51%), Positives = 128/176 (72%), Gaps = 4/176 (2%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ 596
           +A K  D   ++K  + H+ E+++ +D+I EM  VMRKA+++D+ Q CK QE++ Q
Sbjct: 113 MASKKDDPGIIMKLKEQHTKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQ 168


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,813,269
Number of extensions: 684872
Number of successful extensions: 2273
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008507
         (940 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_540248.2| PREDICTED: similar to FGFR1 oncogene partner 2 ...   352   3e-97
Alignment   gi|XP_857004.1| PREDICTED: similar to FGFR1 oncogene partner 2 ...   329   3e-90
Alignment   gi|XP_856962.1| PREDICTED: similar to FGFR1 oncogene partner 2 ...   246   2e-65
Alignment   gi|NP_001184242.1| FGFR1 oncogene partner 2 [Canis lupus famili...   177   1e-44
Alignment   gi|XP_856923.1| PREDICTED: hypothetical protein XP_851830 isofo...   153   2e-37

>ref|XP_540248.2| PREDICTED: similar to FGFR1 oncogene partner 2 isoform 2 [Canis
           familiaris].
          Length = 207

 Score =  352 bits (903), Expect = 3e-97
 Identities = 184/207 (88%), Positives = 187/207 (90%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           IKDMSK+KPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61  IKDMSKFKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ        
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL 180

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QVRK+NSMDT SQAIK
Sbjct: 181 RELLSISSESLQVRKENSMDTASQAIK 207


>ref|XP_857004.1| PREDICTED: similar to FGFR1 oncogene partner 2 isoform 5 [Canis
           familiaris].
          Length = 199

 Score =  329 bits (843), Expect = 3e-90
 Identities = 176/207 (85%), Positives = 179/207 (86%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE        YQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE--------YQEDASD 52

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           IKDMSK+KPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 53  IKDMSKFKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 112

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ        
Sbjct: 113 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL 172

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QVRK+NSMDT SQAIK
Sbjct: 173 RELLSISSESLQVRKENSMDTASQAIK 199


>ref|XP_856962.1| PREDICTED: similar to FGFR1 oncogene partner 2 isoform 4 [Canis
           familiaris].
          Length = 161

 Score =  246 bits (629), Expect = 2e-65
 Identities = 143/207 (69%), Positives = 153/207 (73%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE        YQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE--------YQEDASD 52

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           IKDMSK+KPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 53  IKDMSKFKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 112

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSA +E+         + +R+ + +  +                   
Sbjct: 113 AVDAEPVLKAHQSHSA-LEN---------KELRELLSISSESL----------------- 145

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QVRK+NSMDT SQAIK
Sbjct: 146 -----------QVRKENSMDTASQAIK 161


>ref|NP_001184242.1| FGFR1 oncogene partner 2 [Canis lupus familiaris].
          Length = 215

 Score =  177 bits (449), Expect = 1e-44
 Identities = 91/176 (51%), Positives = 127/176 (72%), Gaps = 4/176 (2%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ 596
           +A K  D   + K  + HS E+++ +D+I EM  VMRKA+++D+ Q CK QE++ Q
Sbjct: 113 MASKKDDPGIITKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQ 168


>ref|XP_856923.1| PREDICTED: hypothetical protein XP_851830 isoform 3 [Canis
           familiaris].
          Length = 103

 Score =  153 bits (387), Expect = 2e-37
 Identities = 81/103 (78%), Positives = 83/103 (80%)
 Frame = +3

Query: 393 MSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFC 572
           MSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFC
Sbjct: 1   MSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFC 60

Query: 573 KIQEKLAQXXXXXXXXXXXXXXXXXXXQVRKDNSMDTTSQAIK 701
           KIQEKLAQ                   QVRK+NSMDT SQAIK
Sbjct: 61  KIQEKLAQLELENKELRELLSISSESLQVRKENSMDTASQAIK 103


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,048,005
Number of extensions: 707397
Number of successful extensions: 2202
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008507
         (940 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001924221.1| PREDICTED: suppressor of IKBKE 1 isoform 1 [...   358   2e-99
Alignment   gi|XP_003355282.1| PREDICTED: suppressor of IKBKE 1 isoform 2 [...   335   2e-92
Alignment   gi|XP_001924632.1| PREDICTED: FGFR1 oncogene partner 2 homolog ...   159   2e-39

>ref|XP_001924221.1| PREDICTED: suppressor of IKBKE 1 isoform 1 [Sus scrofa].
          Length = 207

 Score =  358 bits (920), Expect = 2e-99
 Identities = 188/207 (90%), Positives = 188/207 (90%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61  IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ        
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKEL 180

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QVRKDNSMDTTSQAIK
Sbjct: 181 RELLSISSESLQVRKDNSMDTTSQAIK 207


>ref|XP_003355282.1| PREDICTED: suppressor of IKBKE 1 isoform 2 [Sus scrofa].
          Length = 199

 Score =  335 bits (860), Expect = 2e-92
 Identities = 180/207 (86%), Positives = 180/207 (86%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE        YQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE--------YQEDASD 52

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 53  IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 112

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ        
Sbjct: 113 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKEL 172

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QVRKDNSMDTTSQAIK
Sbjct: 173 RELLSISSESLQVRKDNSMDTTSQAIK 199


>ref|XP_001924632.1| PREDICTED: FGFR1 oncogene partner 2 homolog [Sus scrofa].
          Length = 253

 Score =  159 bits (402), Expect = 2e-39
 Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 42/214 (19%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL +RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI 494
           +A K  D   ++K  + HS                                       E+
Sbjct: 113 MASKKDDPGIIMKLKEQHSKIDMVHRNNSEGFFLDASRHILEAPQHGLERRHLEANQNEL 172

Query: 495 ESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ 596
           ++ +D+I EM  VMRKA+++D+ Q CK QE++ Q
Sbjct: 173 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERILQ 206


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,110,771
Number of extensions: 437034
Number of successful extensions: 1384
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008507
         (940 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079955.1| suppressor of IKBKE 1 [Mus musculus].                328   4e-90
Alignment   gi|NP_080494.1| FGFR1 oncogene partner 2 homolog [Mus musculus].     159   2e-39

>ref|NP_079955.1| suppressor of IKBKE 1 [Mus musculus].
          Length = 207

 Score =  328 bits (841), Expect = 4e-90
 Identities = 170/207 (82%), Positives = 180/207 (86%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAG  LP+QYQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGAVLPEQYQEDASD 60

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           +KDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61  VKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSAEIESQIDRICEMG VMR+AVQ+DD+QFCK+QE+LAQ        
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGAVMRRAVQVDDNQFCKVQERLAQLELENKEL 180

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      QV K++S+   SQ IK
Sbjct: 181 RELLSISSESLQVGKESSVAPASQTIK 207


>ref|NP_080494.1| FGFR1 oncogene partner 2 homolog [Mus musculus].
          Length = 253

 Score =  159 bits (403), Expect = 2e-39
 Identities = 102/265 (38%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL +RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI 494
           +A K  D   ++K  + HS                                       E+
Sbjct: 113 MASKKDDPGIIMKLKEQHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNEL 172

Query: 495 ESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ-XXXXXXXXXXXXXXXXXXXQVRKDN 671
           ++ +D+I EM  VMRKA+++D+ Q CK QE++ Q                     +RKD+
Sbjct: 173 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDD 232

Query: 672 SMDTTSQAIK*FSF*MTAGDCLLRK 746
           + ++TS      S  +T  D  LRK
Sbjct: 233 ASESTS-----LSALVTNSDLSLRK 252


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,276,818
Number of extensions: 601112
Number of successful extensions: 1867
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1860
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008507
         (940 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079349.2| suppressor of IKBKE 1 isoform 2 [Homo sapiens].      350   8e-97
Alignment   gi|NP_001095866.1| suppressor of IKBKE 1 isoform 1 [Homo sapien...   345   4e-95
Alignment   gi|NP_001165358.1| FGFR1 oncogene partner 2 isoform 2 [Homo sap...   179   3e-45
Alignment   gi|NP_056448.1| FGFR1 oncogene partner 2 isoform 1 [Homo sapien...   160   2e-39
Alignment   gi|NP_001165359.1| FGFR1 oncogene partner 2 isoform 3 [Homo sap...   140   1e-33

>ref|NP_079349.2| suppressor of IKBKE 1 isoform 2 [Homo sapiens].
          Length = 207

 Score =  350 bits (899), Expect = 8e-97
 Identities = 182/207 (87%), Positives = 186/207 (89%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60

Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
           +KDMSKYKPHILLSQENTQIRDLQQENRELW+SLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61  MKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLMVAKK 120

Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
           AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ        
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL 180

Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                      Q RK+NSMDT SQAIK
Sbjct: 181 RELLSISSESLQARKENSMDTASQAIK 207


>ref|NP_001095866.1| suppressor of IKBKE 1 isoform 1 [Homo sapiens].
          Length = 211

 Score =  345 bits (884), Expect = 4e-95
 Identities = 182/211 (86%), Positives = 186/211 (88%), Gaps = 4/211 (1%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQ----YQE 248
           MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQ    YQE
Sbjct: 1   MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQE 60

Query: 249 DASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           DASD+KDMSKYKPHILLSQENTQIRDLQQENRELW+SLEEHQDALELIMSKYRKQMLQLM
Sbjct: 61  DASDMKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM 120

Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXX 608
           VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ    
Sbjct: 121 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE 180

Query: 609 XXXXXXXXXXXXXXXQVRKDNSMDTTSQAIK 701
                          Q RK+NSMDT SQAIK
Sbjct: 181 NKELRELLSISSESLQARKENSMDTASQAIK 211


>ref|NP_001165358.1| FGFR1 oncogene partner 2 isoform 2 [Homo sapiens].
          Length = 215

 Score =  179 bits (454), Expect = 3e-45
 Identities = 102/227 (44%), Positives = 145/227 (63%), Gaps = 5/227 (2%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ-XXX 605
           +A K  D   ++K  + HS E+++ +D+I EM  VMRKA+++D+ Q CK QE++ Q    
Sbjct: 113 MASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE 172

Query: 606 XXXXXXXXXXXXXXXXQVRKDNSMDTTSQAIK*FSF*MTAGDCLLRK 746
                            +RKD++ ++TS      S  +T  D  LRK
Sbjct: 173 NKGLREILQITRESFLNLRKDDASESTS-----LSALVTNSDLSLRK 214


>ref|NP_056448.1| FGFR1 oncogene partner 2 isoform 1 [Homo sapiens].
          Length = 253

 Score =  160 bits (405), Expect = 2e-39
 Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 43/265 (16%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI 494
           +A K  D   ++K  + HS                                       E+
Sbjct: 113 MASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNEL 172

Query: 495 ESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ-XXXXXXXXXXXXXXXXXXXQVRKDN 671
           ++ +D+I EM  VMRKA+++D+ Q CK QE++ Q                     +RKD+
Sbjct: 173 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDD 232

Query: 672 SMDTTSQAIK*FSF*MTAGDCLLRK 746
           + ++TS      S  +T  D  LRK
Sbjct: 233 ASESTS-----LSALVTNSDLSLRK 252


>ref|NP_001165359.1| FGFR1 oncogene partner 2 isoform 3 [Homo sapiens].
          Length = 172

 Score =  140 bits (354), Expect = 1e-33
 Identities = 74/139 (53%), Positives = 100/139 (71%), Gaps = 4/139 (2%)
 Frame = +3

Query: 81  MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
           MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+        QYQE+  +
Sbjct: 1   MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52

Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
           + ++++++P   L     QEN QIR+LQQEN+EL  SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53  LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112

Query: 429 VAKKAVDAEPVLKAHQSHS 485
           +A K  D   ++K  + HS
Sbjct: 113 MASKKDDPGIIMKLKEQHS 131


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,701,162
Number of extensions: 700403
Number of successful extensions: 2250
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2228
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008507
         (940 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         674   0.0  

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  674 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus

                                                                             
Query: 601       agcttgaaaataaggaacttcgagagttactgtccatcagcagtgagtctcttcaggtca 660
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974816 agcttgaaaataaggaacttcgagagttactgtccatcagcagtgagtctcttcaggtca 115974875

                                                                             
Query: 661       ggaaggacaattcaatggacactacttcccaagccatcaaataattcagcttctgaatga 720
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974876 ggaaggacaattcaatggacactacttcccaagccatcaaataattcagcttctgaatga 115974935

                                                                             
Query: 721       cagctggagattgtttattaaggaaagaagttattatctctctattctagtgttgtccat 780
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974936 cagctggagattgtttattaaggaaagaagttattatctctctattctagtgttgtccat 115974995

                                                                             
Query: 781       ttagtgtcttgcctcagacttgatttaatgttgattaaatgtatcaagtggcattttaga 840
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974996 ttagtgtcttgcctcagacttgatttaatgttgattaaatgtatcaagtggcattttaga 115975055

                                                                             
Query: 841       attcacagtcaaaagttctgtccacagaacagtttttgggtgaaacacactgagtttcac 900
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115975056 attcacagtcaaaagttctgtccacagaacagtttttgggtgaaacacactgagtttcac 115975115

                                                         
Query: 901       cattcctttctctaagagactattaattttcatatctggg 940
                 ||||||||||||||||||||||||||||||||||||||||
Sbjct: 115975116 cattcctttctctaagagactattaattttcatatctggg 115975155



 Score =  474 bits (239), Expect = e-131
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         ctaacgctgagacaggctcaggacggatctgagaggttcctacagctgaccggcgctggg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968376 ctaacgctgagacaggctcaggacggatctgagaggttcctacagctgaccggcgctggg 115968435

                                                                             
Query: 61        gctgtgttcctgtggaggctatgagctgcaccatcgagaagattctgaccgatgctaaga 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968436 gctgtgttcctgtggaggctatgagctgcaccatcgagaagattctgaccgatgctaaga 115968495

                                                                             
Query: 121       cgctactggagaggctgcgggagcacgatgctgcggccgagtcgctagtggaccagtccg 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968496 cgctactggagaggctgcgggagcacgatgctgcggccgagtcgctagtggaccagtccg 115968555

                                                                            
Query: 181       cggcgctgcaccggcgggtggccgctatgcgggaggcggggacagcccttccggaccag 239
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968556 cggcgctgcaccggcgggtggccgctatgcgggaggcggggacagcccttccggaccag 115968614



 Score =  289 bits (146), Expect = 1e-75
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                             
Query: 344       agagctatgggtttccttggaggaacaccaggatgctttggaactcatcatgagcaaata 403
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115970070 agagctatgggtttccttggaggaacaccaggatgctttggaactcatcatgagcaaata 115970129

                                                                             
Query: 404       ccggaaacagatgttacaattaatggttgctaaaaaagcagtggatgctgaaccagtcct 463
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115970130 ccggaaacagatgttacaattaatggttgctaaaaaagcagtggatgctgaaccagtcct 115970189

                                           
Query: 464       gaaagctcaccagtctcactctgcag 489
                 ||||||||||||||||||||||||||
Sbjct: 115970190 gaaagctcaccagtctcactctgcag 115970215



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                             
Query: 489       gaaattgagagtcagattgacagaatctgtgaaatgggagaagtgatgaggaaagcagtt 548
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115971968 gaaattgagagtcagattgacagaatctgtgaaatgggagaagtgatgaggaaagcagtt 115972027

                                                                       
Query: 549       cagatggatgatgaccaattttgtaagattcaggaaaaactagcacaattagag 602
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115972028 cagatggatgatgaccaattttgtaagattcaggaaaaactagcacaattagag 115972081



 Score =  218 bits (110), Expect = 4e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                             
Query: 236       ccagtatcaagaggatgcatccgatataaaggacatgtccaaatacaaacctcacattct 295
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968844 ccagtatcaagaggatgcatccgatataaaggacatgtccaaatacaaacctcacattct 115968903

                                                                   
Query: 296       gctctcccaagagaatacacagattagagacttgcagcaggaaaacagag 345
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968904 gctctcccaagagaatacacagattagagacttgcagcaggaaaacagag 115968953


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,442,001
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 5
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)