Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008507
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068749.1| suppressor of IKBKE 1 [Bos taurus]. 347 7e-96
Alignment gi|NP_001095617.1| FGFR1 oncogene partner 2 [Bos taurus]. 177 1e-44
>ref|NP_001068749.1| suppressor of IKBKE 1 [Bos taurus].
Length = 207
Score = 347 bits (891), Expect = 7e-96
Identities = 181/207 (87%), Positives = 185/207 (89%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
A DAEPVLKAHQSHSAEIE+QIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ
Sbjct: 121 AADAEPVLKAHQSHSAEIENQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKEL 180
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QVRK++S+DT SQ IK
Sbjct: 181 RELLSISSESLQVRKESSVDTASQGIK 207
>ref|NP_001095617.1| FGFR1 oncogene partner 2 [Bos taurus].
Length = 174
Score = 177 bits (449), Expect = 1e-44
Identities = 90/176 (51%), Positives = 128/176 (72%), Gaps = 4/176 (2%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ 596
+A K D ++K + H+ E+++ +D+I EM VMRKA+++D+ Q CK QE++ Q
Sbjct: 113 MASKKDDPGIIMKLKEQHTKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQ 168
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,813,269
Number of extensions: 684872
Number of successful extensions: 2273
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008507
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540248.2| PREDICTED: similar to FGFR1 oncogene partner 2 ... 352 3e-97
Alignment gi|XP_857004.1| PREDICTED: similar to FGFR1 oncogene partner 2 ... 329 3e-90
Alignment gi|XP_856962.1| PREDICTED: similar to FGFR1 oncogene partner 2 ... 246 2e-65
Alignment gi|NP_001184242.1| FGFR1 oncogene partner 2 [Canis lupus famili... 177 1e-44
Alignment gi|XP_856923.1| PREDICTED: hypothetical protein XP_851830 isofo... 153 2e-37
>ref|XP_540248.2| PREDICTED: similar to FGFR1 oncogene partner 2 isoform 2 [Canis
familiaris].
Length = 207
Score = 352 bits (903), Expect = 3e-97
Identities = 184/207 (88%), Positives = 187/207 (90%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
IKDMSK+KPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61 IKDMSKFKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL 180
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QVRK+NSMDT SQAIK
Sbjct: 181 RELLSISSESLQVRKENSMDTASQAIK 207
>ref|XP_857004.1| PREDICTED: similar to FGFR1 oncogene partner 2 isoform 5 [Canis
familiaris].
Length = 199
Score = 329 bits (843), Expect = 3e-90
Identities = 176/207 (85%), Positives = 179/207 (86%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE YQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE--------YQEDASD 52
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
IKDMSK+KPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 53 IKDMSKFKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 112
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ
Sbjct: 113 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL 172
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QVRK+NSMDT SQAIK
Sbjct: 173 RELLSISSESLQVRKENSMDTASQAIK 199
>ref|XP_856962.1| PREDICTED: similar to FGFR1 oncogene partner 2 isoform 4 [Canis
familiaris].
Length = 161
Score = 246 bits (629), Expect = 2e-65
Identities = 143/207 (69%), Positives = 153/207 (73%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE YQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE--------YQEDASD 52
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
IKDMSK+KPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 53 IKDMSKFKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 112
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSA +E+ + +R+ + + +
Sbjct: 113 AVDAEPVLKAHQSHSA-LEN---------KELRELLSISSESL----------------- 145
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QVRK+NSMDT SQAIK
Sbjct: 146 -----------QVRKENSMDTASQAIK 161
>ref|NP_001184242.1| FGFR1 oncogene partner 2 [Canis lupus familiaris].
Length = 215
Score = 177 bits (449), Expect = 1e-44
Identities = 91/176 (51%), Positives = 127/176 (72%), Gaps = 4/176 (2%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ 596
+A K D + K + HS E+++ +D+I EM VMRKA+++D+ Q CK QE++ Q
Sbjct: 113 MASKKDDPGIITKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQ 168
>ref|XP_856923.1| PREDICTED: hypothetical protein XP_851830 isoform 3 [Canis
familiaris].
Length = 103
Score = 153 bits (387), Expect = 2e-37
Identities = 81/103 (78%), Positives = 83/103 (80%)
Frame = +3
Query: 393 MSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFC 572
MSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFC
Sbjct: 1 MSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFC 60
Query: 573 KIQEKLAQXXXXXXXXXXXXXXXXXXXQVRKDNSMDTTSQAIK 701
KIQEKLAQ QVRK+NSMDT SQAIK
Sbjct: 61 KIQEKLAQLELENKELRELLSISSESLQVRKENSMDTASQAIK 103
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,048,005
Number of extensions: 707397
Number of successful extensions: 2202
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008507
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924221.1| PREDICTED: suppressor of IKBKE 1 isoform 1 [... 358 2e-99
Alignment gi|XP_003355282.1| PREDICTED: suppressor of IKBKE 1 isoform 2 [... 335 2e-92
Alignment gi|XP_001924632.1| PREDICTED: FGFR1 oncogene partner 2 homolog ... 159 2e-39
>ref|XP_001924221.1| PREDICTED: suppressor of IKBKE 1 isoform 1 [Sus scrofa].
Length = 207
Score = 358 bits (920), Expect = 2e-99
Identities = 188/207 (90%), Positives = 188/207 (90%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKEL 180
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QVRKDNSMDTTSQAIK
Sbjct: 181 RELLSISSESLQVRKDNSMDTTSQAIK 207
>ref|XP_003355282.1| PREDICTED: suppressor of IKBKE 1 isoform 2 [Sus scrofa].
Length = 199
Score = 335 bits (860), Expect = 2e-92
Identities = 180/207 (86%), Positives = 180/207 (86%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE YQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMRE--------YQEDASD 52
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 53 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 112
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ
Sbjct: 113 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKEL 172
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QVRKDNSMDTTSQAIK
Sbjct: 173 RELLSISSESLQVRKDNSMDTTSQAIK 199
>ref|XP_001924632.1| PREDICTED: FGFR1 oncogene partner 2 homolog [Sus scrofa].
Length = 253
Score = 159 bits (402), Expect = 2e-39
Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 42/214 (19%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL +RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI 494
+A K D ++K + HS E+
Sbjct: 113 MASKKDDPGIIMKLKEQHSKIDMVHRNNSEGFFLDASRHILEAPQHGLERRHLEANQNEL 172
Query: 495 ESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ 596
++ +D+I EM VMRKA+++D+ Q CK QE++ Q
Sbjct: 173 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERILQ 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,110,771
Number of extensions: 437034
Number of successful extensions: 1384
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008507
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079955.1| suppressor of IKBKE 1 [Mus musculus]. 328 4e-90
Alignment gi|NP_080494.1| FGFR1 oncogene partner 2 homolog [Mus musculus]. 159 2e-39
>ref|NP_079955.1| suppressor of IKBKE 1 [Mus musculus].
Length = 207
Score = 328 bits (841), Expect = 4e-90
Identities = 170/207 (82%), Positives = 180/207 (86%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAG LP+QYQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGAVLPEQYQEDASD 60
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
+KDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61 VKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 120
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSAEIESQIDRICEMG VMR+AVQ+DD+QFCK+QE+LAQ
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGAVMRRAVQVDDNQFCKVQERLAQLELENKEL 180
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
QV K++S+ SQ IK
Sbjct: 181 RELLSISSESLQVGKESSVAPASQTIK 207
>ref|NP_080494.1| FGFR1 oncogene partner 2 homolog [Mus musculus].
Length = 253
Score = 159 bits (403), Expect = 2e-39
Identities = 102/265 (38%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL +RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI 494
+A K D ++K + HS E+
Sbjct: 113 MASKKDDPGIIMKLKEQHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNEL 172
Query: 495 ESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ-XXXXXXXXXXXXXXXXXXXQVRKDN 671
++ +D+I EM VMRKA+++D+ Q CK QE++ Q +RKD+
Sbjct: 173 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDD 232
Query: 672 SMDTTSQAIK*FSF*MTAGDCLLRK 746
+ ++TS S +T D LRK
Sbjct: 233 ASESTS-----LSALVTNSDLSLRK 252
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,276,818
Number of extensions: 601112
Number of successful extensions: 1867
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1860
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008507
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079349.2| suppressor of IKBKE 1 isoform 2 [Homo sapiens]. 350 8e-97
Alignment gi|NP_001095866.1| suppressor of IKBKE 1 isoform 1 [Homo sapien... 345 4e-95
Alignment gi|NP_001165358.1| FGFR1 oncogene partner 2 isoform 2 [Homo sap... 179 3e-45
Alignment gi|NP_056448.1| FGFR1 oncogene partner 2 isoform 1 [Homo sapien... 160 2e-39
Alignment gi|NP_001165359.1| FGFR1 oncogene partner 2 isoform 3 [Homo sap... 140 1e-33
>ref|NP_079349.2| suppressor of IKBKE 1 isoform 2 [Homo sapiens].
Length = 207
Score = 350 bits (899), Expect = 8e-97
Identities = 182/207 (87%), Positives = 186/207 (89%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 60
Query: 261 IKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKK 440
+KDMSKYKPHILLSQENTQIRDLQQENRELW+SLEEHQDALELIMSKYRKQMLQLMVAKK
Sbjct: 61 MKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLMVAKK 120
Query: 441 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXXXXXX 620
AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ
Sbjct: 121 AVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELENKEL 180
Query: 621 XXXXXXXXXXXQVRKDNSMDTTSQAIK 701
Q RK+NSMDT SQAIK
Sbjct: 181 RELLSISSESLQARKENSMDTASQAIK 207
>ref|NP_001095866.1| suppressor of IKBKE 1 isoform 1 [Homo sapiens].
Length = 211
Score = 345 bits (884), Expect = 4e-95
Identities = 182/211 (86%), Positives = 186/211 (88%), Gaps = 4/211 (1%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQ----YQE 248
MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQ YQE
Sbjct: 1 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQE 60
Query: 249 DASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
DASD+KDMSKYKPHILLSQENTQIRDLQQENRELW+SLEEHQDALELIMSKYRKQMLQLM
Sbjct: 61 DASDMKDMSKYKPHILLSQENTQIRDLQQENRELWISLEEHQDALELIMSKYRKQMLQLM 120
Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQXXXX 608
VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQ+DDDQFCKIQEKLAQ
Sbjct: 121 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQVDDDQFCKIQEKLAQLELE 180
Query: 609 XXXXXXXXXXXXXXXQVRKDNSMDTTSQAIK 701
Q RK+NSMDT SQAIK
Sbjct: 181 NKELRELLSISSESLQARKENSMDTASQAIK 211
>ref|NP_001165358.1| FGFR1 oncogene partner 2 isoform 2 [Homo sapiens].
Length = 215
Score = 179 bits (454), Expect = 3e-45
Identities = 102/227 (44%), Positives = 145/227 (63%), Gaps = 5/227 (2%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ-XXX 605
+A K D ++K + HS E+++ +D+I EM VMRKA+++D+ Q CK QE++ Q
Sbjct: 113 MASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE 172
Query: 606 XXXXXXXXXXXXXXXXQVRKDNSMDTTSQAIK*FSF*MTAGDCLLRK 746
+RKD++ ++TS S +T D LRK
Sbjct: 173 NKGLREILQITRESFLNLRKDDASESTS-----LSALVTNSDLSLRK 214
>ref|NP_056448.1| FGFR1 oncogene partner 2 isoform 1 [Homo sapiens].
Length = 253
Score = 160 bits (405), Expect = 2e-39
Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 43/265 (16%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHSA--------------------------------------EI 494
+A K D ++K + HS E+
Sbjct: 113 MASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNEL 172
Query: 495 ESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQ-XXXXXXXXXXXXXXXXXXXQVRKDN 671
++ +D+I EM VMRKA+++D+ Q CK QE++ Q +RKD+
Sbjct: 173 QAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDD 232
Query: 672 SMDTTSQAIK*FSF*MTAGDCLLRK 746
+ ++TS S +T D LRK
Sbjct: 233 ASESTS-----LSALVTNSDLSLRK 252
>ref|NP_001165359.1| FGFR1 oncogene partner 2 isoform 3 [Homo sapiens].
Length = 172
Score = 140 bits (354), Expect = 1e-33
Identities = 74/139 (53%), Positives = 100/139 (71%), Gaps = 4/139 (2%)
Frame = +3
Query: 81 MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQYQEDASD 260
MSCTIEK L DAK L+ERLR+HD AAESL++Q+ AL++RV AM+ QYQE+ +
Sbjct: 1 MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMK--------QYQEEIQE 52
Query: 261 IKDMSKYKPHILL----SQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLM 428
+ ++++++P L QEN QIR+LQQEN+EL SLEEHQ ALELIMSKYR+QM +L+
Sbjct: 53 LNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLL 112
Query: 429 VAKKAVDAEPVLKAHQSHS 485
+A K D ++K + HS
Sbjct: 113 MASKKDDPGIIMKLKEQHS 131
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,701,162
Number of extensions: 700403
Number of successful extensions: 2250
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2228
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008507
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 674 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 601 agcttgaaaataaggaacttcgagagttactgtccatcagcagtgagtctcttcaggtca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974816 agcttgaaaataaggaacttcgagagttactgtccatcagcagtgagtctcttcaggtca 115974875
Query: 661 ggaaggacaattcaatggacactacttcccaagccatcaaataattcagcttctgaatga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974876 ggaaggacaattcaatggacactacttcccaagccatcaaataattcagcttctgaatga 115974935
Query: 721 cagctggagattgtttattaaggaaagaagttattatctctctattctagtgttgtccat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974936 cagctggagattgtttattaaggaaagaagttattatctctctattctagtgttgtccat 115974995
Query: 781 ttagtgtcttgcctcagacttgatttaatgttgattaaatgtatcaagtggcattttaga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115974996 ttagtgtcttgcctcagacttgatttaatgttgattaaatgtatcaagtggcattttaga 115975055
Query: 841 attcacagtcaaaagttctgtccacagaacagtttttgggtgaaacacactgagtttcac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115975056 attcacagtcaaaagttctgtccacagaacagtttttgggtgaaacacactgagtttcac 115975115
Query: 901 cattcctttctctaagagactattaattttcatatctggg 940
||||||||||||||||||||||||||||||||||||||||
Sbjct: 115975116 cattcctttctctaagagactattaattttcatatctggg 115975155
Score = 474 bits (239), Expect = e-131
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 1 ctaacgctgagacaggctcaggacggatctgagaggttcctacagctgaccggcgctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968376 ctaacgctgagacaggctcaggacggatctgagaggttcctacagctgaccggcgctggg 115968435
Query: 61 gctgtgttcctgtggaggctatgagctgcaccatcgagaagattctgaccgatgctaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968436 gctgtgttcctgtggaggctatgagctgcaccatcgagaagattctgaccgatgctaaga 115968495
Query: 121 cgctactggagaggctgcgggagcacgatgctgcggccgagtcgctagtggaccagtccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968496 cgctactggagaggctgcgggagcacgatgctgcggccgagtcgctagtggaccagtccg 115968555
Query: 181 cggcgctgcaccggcgggtggccgctatgcgggaggcggggacagcccttccggaccag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968556 cggcgctgcaccggcgggtggccgctatgcgggaggcggggacagcccttccggaccag 115968614
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 344 agagctatgggtttccttggaggaacaccaggatgctttggaactcatcatgagcaaata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115970070 agagctatgggtttccttggaggaacaccaggatgctttggaactcatcatgagcaaata 115970129
Query: 404 ccggaaacagatgttacaattaatggttgctaaaaaagcagtggatgctgaaccagtcct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115970130 ccggaaacagatgttacaattaatggttgctaaaaaagcagtggatgctgaaccagtcct 115970189
Query: 464 gaaagctcaccagtctcactctgcag 489
||||||||||||||||||||||||||
Sbjct: 115970190 gaaagctcaccagtctcactctgcag 115970215
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 489 gaaattgagagtcagattgacagaatctgtgaaatgggagaagtgatgaggaaagcagtt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115971968 gaaattgagagtcagattgacagaatctgtgaaatgggagaagtgatgaggaaagcagtt 115972027
Query: 549 cagatggatgatgaccaattttgtaagattcaggaaaaactagcacaattagag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115972028 cagatggatgatgaccaattttgtaagattcaggaaaaactagcacaattagag 115972081
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 236 ccagtatcaagaggatgcatccgatataaaggacatgtccaaatacaaacctcacattct 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968844 ccagtatcaagaggatgcatccgatataaaggacatgtccaaatacaaacctcacattct 115968903
Query: 296 gctctcccaagagaatacacagattagagacttgcagcaggaaaacagag 345
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115968904 gctctcccaagagaatacacagattagagacttgcagcaggaaaacagag 115968953
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,442,001
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 5
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)