Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008513
(1135 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096738.1| tsukushin [Bos taurus]. 379 e-105
Alignment gi|NP_001077265.1| vasorin [Bos taurus]. 80 3e-15
Alignment gi|NP_001070439.1| leucine rich repeat neuronal 2 [Bos taurus]. 79 1e-14
Alignment gi|XP_002688798.1| PREDICTED: Podnl1 protein-like [Bos taurus]. 77 4e-14
Alignment gi|XP_614353.5| PREDICTED: Podnl1 protein-like [Bos taurus]. 77 4e-14
Alignment gi|NP_001069431.1| insulin-like growth factor-binding protein c... 76 6e-14
Alignment gi|NP_001192440.1| leucine-rich repeat-containing G-protein cou... 76 6e-14
Alignment gi|XP_002693534.1| PREDICTED: leucine-rich repeat-containing G ... 76 6e-14
Alignment gi|NP_001029481.1| asporin precursor [Bos taurus]. 74 3e-13
Alignment gi|NP_001179210.1| leucine-rich repeat-containing protein 4B [B... 70 3e-12
>ref|NP_001096738.1| tsukushin [Bos taurus].
Length = 344
Score = 379 bits (974), Expect = e-105
Identities = 191/216 (88%), Positives = 195/216 (90%)
Frame = +3
Query: 114 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 293
S AQ TRPCFPGCQCEVETFGLFDSFSLTRV CSGLGPHIVPVPIPLDTAHLDLSSNRLE
Sbjct: 17 SGAQTTRPCFPGCQCEVETFGLFDSFSLTRVGCSGLGPHIVPVPIPLDTAHLDLSSNRLE 76
Query: 294 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 473
TVNESVLAGPGYTTL+GLDLS+NLLTSLSPTAFSRLRYLESLDLSHNGLAALP SFTSS
Sbjct: 77 TVNESVLAGPGYTTLSGLDLSYNLLTSLSPTAFSRLRYLESLDLSHNGLAALPTGSFTSS 136
Query: 474 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 653
PLSDVNLSHNRLRE+SVSAFATHSQGRALHVDLSHNLLQRL PH +RA PAPTIQSLNL
Sbjct: 137 PLSDVNLSHNRLREVSVSAFATHSQGRALHVDLSHNLLQRLLPHSSRAGQPAPTIQSLNL 196
Query: 654 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAG 761
AWNRLRAVPDLR LPLRYLSLDG P G
Sbjct: 197 AWNRLRAVPDLRGLPLRYLSLDGTRWQPSAPAPLRG 232
Score = 176 bits (445), Expect(2) = 3e-46
Identities = 73/95 (76%), Positives = 77/95 (81%)
Frame = +1
Query: 721 GTRWRPSAPGPSRGWRASRTCRWAACRGSPSWRPTASGSCGACRSWTCQATPSSRGPEPR 900
GTRW+PSAP P RGWRAS CRWAACR SP WRPTAS SC ACRSWTC ATP S G + R
Sbjct: 219 GTRWQPSAPAPLRGWRASLICRWAACRVSPCWRPTASTSCRACRSWTCPATPGSNGQDLR 278
Query: 901 CFRAWTPCRSWTCRARPWCPCPRSCSSTCQHCRAS 1005
C +AW PCRSWTCRA+ WCPCPRSCSST HCRAS
Sbjct: 279 CSQAWAPCRSWTCRAQAWCPCPRSCSSTSPHCRAS 313
Score = 28.9 bits (63), Expect(2) = 3e-46
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 1017 GVWCRRLVR*GTYPRQPGSTPRWPCTA 1097
G WC R G+ S PRWPCTA
Sbjct: 322 GAWCGRAPTHGSL----ASPPRWPCTA 344
>ref|NP_001077265.1| vasorin [Bos taurus].
Length = 673
Score = 80.5 bits (197), Expect = 3e-15
Identities = 86/272 (31%), Positives = 116/272 (42%), Gaps = 4/272 (1%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V C+ VP+ +P DT L + N + T++ A
Sbjct: 27 CPSGCQCNQPR----------TVFCTARRGTTVPLDVPPDTVGLYIFENGITTLDAGSFA 76
Query: 318 G-PGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVN 491
G PG L LDLS N + SL F L L +LDL+ N L + ++F L +
Sbjct: 77 GLPG---LQLLDLSQNQIASLPGGVFQPLANLSNLDLTANRLREITNETFRGLRRLERLY 133
Query: 492 LSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLR 671
L NR+R + AF R L + L N L+ L P L P + L+L+ N L
Sbjct: 134 LGKNRIRHIQPGAFDVFD--RLLELKLQDNELRALPP------LRLPRLLLLDLSHNGLS 185
Query: 672 AV-PDLRDLP-LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRG 845
A+ P + D + L L G L + G F L L R LRG
Sbjct: 186 ALEPGVLDTANVETLRLAGLGLRHLDEGLFGRLRNL--HNLDVADNQLERVPPAVRGLRG 243
Query: 846 LQVLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
L L L+GN ++ E +GL +LQELDLS
Sbjct: 244 LTRLRLAGNTRIAQLWLEDLAGLAALQELDLS 275
>ref|NP_001070439.1| leucine rich repeat neuronal 2 [Bos taurus].
Length = 370
Score = 78.6 bits (192), Expect = 1e-14
Identities = 81/254 (31%), Positives = 112/254 (44%), Gaps = 7/254 (2%)
Frame = +3
Query: 135 PCFPGCQCEVETFGLFDSF--SLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNES 308
PC PGC C++ + S T VDC+ L VP +P T L L SN + V++S
Sbjct: 28 PCPPGCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPALPAGTQTLLLQSNSIVRVDQS 87
Query: 309 VLAGPGY-TTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLS 482
L GY L LDLS N + L L SL L N L L SF + L
Sbjct: 88 EL---GYLANLTELDLSQNSFSDPRDCDLRALPQLLSLHLEENQLTRLEDHSFAGLASLQ 144
Query: 483 DVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWN 662
++ L+HN+L ++ AFA S LH L+ NLL+ + R P+++ L + N
Sbjct: 145 ELYLNHNQLYRIAPRAFAGLSNLLRLH--LNSNLLRAV---DNRWFEMLPSLEILMIGGN 199
Query: 663 RLRAVPDLRDLP---LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFR 833
++ A+ D+ P LR L L G L I A GL L
Sbjct: 200 KVDAILDMNFRPLANLRSLVLAGMNLREISDYALEGLQSL-ESLSFYDNQLARVPRRALE 258
Query: 834 ELRGLQVLDLSGNP 875
++ GL+ LDL+ NP
Sbjct: 259 QVPGLKFLDLNKNP 272
>ref|XP_002688798.1| PREDICTED: Podnl1 protein-like [Bos taurus].
Length = 653
Score = 76.6 bits (187), Expect = 4e-14
Identities = 79/234 (33%), Positives = 106/234 (45%), Gaps = 3/234 (1%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
VP +P L L +N + V L+ T L L L HN LT L T FS+L
Sbjct: 242 VPPSLPPSLERLHLQNNLISKVPRGALSRQ--THLRELYLQHNQLTDSGLDATTFSKLHR 299
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
LE LDLSHN LAA+PA L+ ++L NR+R + + R ++ L HN L
Sbjct: 300 LEYLDLSHNQLAAVPAG--LPRTLAVLHLGRNRIRWVEAARLGGLRGLR--YLLLQHNQL 355
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
PA A P + +L+L NRL VP LR L L N +AA+G
Sbjct: 356 GATG-LPAGALRPLRGLHTLHLYGNRLDRVPQALPRRLRALVLPHNRVAALGARDLTSTP 414
Query: 768 GLT-XXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQ 926
L FR LR L+ LDL+GN +LT + + +GL +L+
Sbjct: 415 RLAELNLAYNCLASARVHLRAFRRLRALRSLDLAGN-QLTQLPSGLPAGLHTLR 467
Score = 60.1 bits (144), Expect = 4e-09
Identities = 75/240 (31%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLL--TSLSPTAFSRLRY 407
VP +P A L L NR+ V + L G L L L HN L T L A LR
Sbjct: 313 VPAGLPRTLAVLHLGRNRIRWVEAARLGG--LRGLRYLLLQHNQLGATGLPAGALRPLRG 370
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
L +L L N L +P L + L HNR+ L S R ++L++N L
Sbjct: 371 LHTLHLYGNRLDRVPQA--LPRRLRALVLPHNRVAALGARDLT--STPRLAELNLAYNCL 426
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
H RA ++SL+LA N+L +P L L L N L + P AGL
Sbjct: 427 ASARVH-LRAFRRLRALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLH 485
Query: 768 GLTXXXXXXXXXXXXXXXXX-FRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSG 944
L + EL+ LQVLDLS N +L++ ++ ++L+EL L G
Sbjct: 486 QLQELSLAHNRLRVGGIGPGTWHELQALQVLDLSHN-ELSFVPPDL---PEALEELHLQG 541
Score = 59.7 bits (143), Expect = 5e-09
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 3/250 (1%)
Frame = +3
Query: 132 RPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESV 311
R C P C C VDC GL + P I HL L +N+L+ + +
Sbjct: 76 RACPPRCSCPRPD----------TVDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNE 125
Query: 312 LAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSD 485
L+ + L L+L +NL++S L AF L L+ + ++HN L+ P F L
Sbjct: 126 LS--RLSGLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAP--QFLPRSLRV 181
Query: 486 VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNR 665
+L+ N + E+ F R++++ HN A P A + + +L+L+ N+
Sbjct: 182 ADLAANEVTEIFPLTFGEKPALRSVYL---HNNQLSNAGLPPDAFRGSEAVATLSLSSNQ 238
Query: 666 LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELR 842
L VP L L L N ++ + GA + L F +L
Sbjct: 239 LSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLH 298
Query: 843 GLQVLDLSGN 872
L+ LDLS N
Sbjct: 299 RLEYLDLSHN 308
Score = 55.8 bits (133), Expect = 7e-08
Identities = 68/212 (32%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
VP +P L L NR+ + L LA L+L++N L S + AF RLR
Sbjct: 384 VPQALPRRLRALVLPHNRVAALGARDLTST--PRLAELNLAYNCLASARVHLRAFRRLRA 441
Query: 408 LESLDLSHNGLAALPA--------------QSFTSSP--------LSDVNLSHNRLRELS 521
L SLDL+ N L LP+ Q T P L +++L+HNRLR
Sbjct: 442 LRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLHQLQELSLAHNRLRVGG 501
Query: 522 VSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAV-------- 677
+ H +DLSHN L + P LP ++ L+L NR+ V
Sbjct: 502 IGPGTWHELQALQVLDLSHNELSFVPP-----DLP-EALEELHLQGNRIGHVGPEAFLST 555
Query: 678 PDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL 773
P LR L LR L + +I P AF GL L
Sbjct: 556 PRLRALFLRANRLH---MTSIAPEAFLGLLHL 584
>ref|XP_614353.5| PREDICTED: Podnl1 protein-like [Bos taurus].
Length = 653
Score = 76.6 bits (187), Expect = 4e-14
Identities = 79/234 (33%), Positives = 106/234 (45%), Gaps = 3/234 (1%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
VP +P L L +N + V L+ T L L L HN LT L T FS+L
Sbjct: 242 VPPSLPPSLERLHLQNNLISKVPRGALSRQ--THLRELYLQHNQLTDSGLDATTFSKLHR 299
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
LE LDLSHN LAA+PA L+ ++L NR+R + + R ++ L HN L
Sbjct: 300 LEYLDLSHNQLAAVPAG--LPRTLAVLHLGRNRIRWVEAARLGGLRGLR--YLLLQHNQL 355
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
PA A P + +L+L NRL VP LR L L N +AA+G
Sbjct: 356 GATG-LPAGALRPLRGLHTLHLYGNRLDRVPQALPRRLRALVLPHNRVAALGARDLTSTP 414
Query: 768 GLT-XXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQ 926
L FR LR L+ LDL+GN +LT + + +GL +L+
Sbjct: 415 RLAELNLAYNCLASARVHLRAFRRLRALRSLDLAGN-QLTQLPSGLPAGLHTLR 467
Score = 60.1 bits (144), Expect = 4e-09
Identities = 75/240 (31%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLL--TSLSPTAFSRLRY 407
VP +P A L L NR+ V + L G L L L HN L T L A LR
Sbjct: 313 VPAGLPRTLAVLHLGRNRIRWVEAARLGG--LRGLRYLLLQHNQLGATGLPAGALRPLRG 370
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
L +L L N L +P L + L HNR+ L S R ++L++N L
Sbjct: 371 LHTLHLYGNRLDRVPQA--LPRRLRALVLPHNRVAALGARDLT--STPRLAELNLAYNCL 426
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
H RA ++SL+LA N+L +P L L L N L + P AGL
Sbjct: 427 ASARVH-LRAFRRLRALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLH 485
Query: 768 GLTXXXXXXXXXXXXXXXXX-FRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSG 944
L + EL+ LQVLDLS N +L++ ++ ++L+EL L G
Sbjct: 486 QLQELSLAHNRLRVGGIGPGTWHELQALQVLDLSHN-ELSFVPPDL---PEALEELHLQG 541
Score = 59.7 bits (143), Expect = 5e-09
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 3/250 (1%)
Frame = +3
Query: 132 RPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESV 311
R C P C C VDC GL + P I HL L +N+L+ + +
Sbjct: 76 RACPPRCSCPRPD----------TVDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNE 125
Query: 312 LAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSD 485
L+ + L L+L +NL++S L AF L L+ + ++HN L+ P F L
Sbjct: 126 LS--RLSGLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAP--QFLPRSLRV 181
Query: 486 VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNR 665
+L+ N + E+ F R++++ HN A P A + + +L+L+ N+
Sbjct: 182 ADLAANEVTEIFPLTFGEKPALRSVYL---HNNQLSNAGLPPDAFRGSEAVATLSLSSNQ 238
Query: 666 LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELR 842
L VP L L L N ++ + GA + L F +L
Sbjct: 239 LSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLH 298
Query: 843 GLQVLDLSGN 872
L+ LDLS N
Sbjct: 299 RLEYLDLSHN 308
Score = 55.8 bits (133), Expect = 7e-08
Identities = 68/212 (32%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
VP +P L L NR+ + L LA L+L++N L S + AF RLR
Sbjct: 384 VPQALPRRLRALVLPHNRVAALGARDLTST--PRLAELNLAYNCLASARVHLRAFRRLRA 441
Query: 408 LESLDLSHNGLAALPA--------------QSFTSSP--------LSDVNLSHNRLRELS 521
L SLDL+ N L LP+ Q T P L +++L+HNRLR
Sbjct: 442 LRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLHQLQELSLAHNRLRVGG 501
Query: 522 VSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAV-------- 677
+ H +DLSHN L + P LP ++ L+L NR+ V
Sbjct: 502 IGPGTWHELQALQVLDLSHNELSFVPP-----DLP-EALEELHLQGNRIGHVGPEAFLST 555
Query: 678 PDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL 773
P LR L LR L + +I P AF GL L
Sbjct: 556 PRLRALFLRANRLH---MTSIAPEAFLGLLHL 584
>ref|NP_001069431.1| insulin-like growth factor-binding protein complex acid labile
subunit [Bos taurus].
Length = 611
Score = 75.9 bits (185), Expect = 6e-14
Identities = 84/256 (32%), Positives = 110/256 (42%), Gaps = 31/256 (12%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
LDLS N L +V +V L L L HNL+ +++P AF ++ L LDLSHN + +
Sbjct: 228 LDLSRNTLRSVKANVFVK--LPKLQKLYLDHNLVAAVAPGAFLGMKALRWLDLSHNRVGS 285
Query: 447 LPAQSFTS-------------------------SPLSDVNLSHNRLRELSVSAFATHSQG 551
L SF L ++ L HNRLR+L AFA Q
Sbjct: 286 LLEDSFPGLLGLHVLRLSHNALAGLRPRTFKDLHFLEELQLGHNRLRQLPEEAFAGLGQL 345
Query: 552 RALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRD---LPLRYLSLDG 722
L L+ N LQ L P L + LNL+ N LR +P+ L L L+G
Sbjct: 346 EVL--ALNDNQLQELRP---GGFLGLRNLAVLNLSSNCLRDLPERAFQGLAKLHSLHLEG 400
Query: 723 NPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQ---VLDLSGNPKLTWAG 893
LA +GP AFAGL+GL R L GL LDL+ N +LT
Sbjct: 401 GCLARLGPLAFAGLSGLRRLFLKGNSIADVDE----RSLGGLAELLELDLTAN-QLTHLP 455
Query: 894 AEVFSGLDSLQELDLS 941
+F L L+ L L+
Sbjct: 456 GRLFQDLGRLEYLLLA 471
Score = 72.4 bits (176), Expect = 7e-13
Identities = 76/233 (32%), Positives = 102/233 (43%), Gaps = 5/233 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L+ N+L + ++ G G L LDLS N L S+ F +L L+ L L HN +AA
Sbjct: 204 LVLAGNKLAYLQPALFCGLG--ELRELDLSRNTLRSVKANVFVKLPKLQKLYLDHNLVAA 261
Query: 447 LPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARAS 620
+ +F L ++LSHNR+ L +F LHV LSHN L L P R
Sbjct: 262 VAPGAFLGMKALRWLDLSHNRVGSLLEDSFPGL---LGLHVLRLSHNALAGLRP---RTF 315
Query: 621 LPAPTIQSLNLAWNRLRAVPDLRDL---PLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXX 791
++ L L NRLR +P+ L L+L+ N L + PG F GL L
Sbjct: 316 KDLHFLEELQLGHNRLRQLPEEAFAGLGQLEVLALNDNQLQELRPGGFLGLRNLA-VLNL 374
Query: 792 XXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTA 950
F+ L L L L G L G F+GL L+ L L G +
Sbjct: 375 SSNCLRDLPERAFQGLAKLHSLHLEGG-CLARLGPLAFAGLSGLRRLFLKGNS 426
Score = 63.9 bits (154), Expect = 2e-10
Identities = 68/201 (33%), Positives = 88/201 (43%), Gaps = 4/201 (1%)
Frame = +3
Query: 351 LSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNLSHNRLRELSVS 527
L N +S+ AF L L L+L +GLA+L Q+ L ++L HNRL L+
Sbjct: 86 LDGNNFSSIPAAAFRNLSGLGFLNLQGSGLASLEPQALLGLRGLCHLHLEHNRLHALAAH 145
Query: 528 AFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRD---LP 698
F H+ G A + LS+NLL RL R + LNL WN L +PD
Sbjct: 146 TFL-HTPGLA-SLGLSNNLLSRLDEGLFRG---LAHLWDLNLGWNSLTVLPDTAFQGLAG 200
Query: 699 LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPK 878
LR L L GN LA + P F GL G F +L LQ L L N
Sbjct: 201 LRELVLAGNKLAYLQPALFCGL-GELRELDLSRNTLRSVKANVFVKLPKLQKLYLDHN-L 258
Query: 879 LTWAGAEVFSGLDSLQELDLS 941
+ F G+ +L+ LDLS
Sbjct: 259 VAAVAPGAFLGMKALRWLDLS 279
Score = 53.1 bits (126), Expect = 4e-07
Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 4/166 (2%)
Frame = +3
Query: 261 AHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGL 440
A L+LSSN L + E A G L L L L L P AF+ L L L L N +
Sbjct: 370 AVLNLSSNCLRDLPER--AFQGLAKLHSLHLEGGCLARLGPLAFAGLSGLRRLFLKGNSI 427
Query: 441 AALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARA 617
A + +S + L +++L+ N+L L F GR ++ L+ N RL+ PA A
Sbjct: 428 ADVDERSLGGLAELLELDLTANQLTHLPGRLF--QDLGRLEYLLLARN---RLSALPADA 482
Query: 618 SLPAPTIQSLNLAWNRLRAVPDLRDLP---LRYLSLDGNPLAAIGP 746
P L+++ NRL A+P P LR+LSL N L P
Sbjct: 483 LGPLQRTFWLDVSHNRLEALPAAALAPLSRLRFLSLRNNSLRTFAP 528
Score = 53.1 bits (126), Expect = 4e-07
Identities = 46/117 (39%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L N + V+E L G L LDL+ N LT L F L LE L L+ N L+A
Sbjct: 420 LFLKGNSIADVDERSLGG--LAELLELDLTANQLTHLPGRLFQDLGRLEYLLLARNRLSA 477
Query: 447 LPAQSFTSSPLSD---VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHP 608
LPA + PL +++SHNRL L +A A S+ R L L +N L+ AP P
Sbjct: 478 LPADAL--GPLQRTFWLDVSHNRLEALPAAALAPLSRLRFL--SLRNNSLRTFAPQP 530
>ref|NP_001192440.1| leucine-rich repeat-containing G-protein coupled receptor 4 [Bos
taurus].
Length = 951
Score = 75.9 bits (185), Expect = 6e-14
Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 4/216 (1%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C C C+ + RVDCSG G VP + T LD+S N + + E A
Sbjct: 29 CAAPCSCDGDR----------RVDCSGKGLTAVPEGLSAFTQLLDISMNNITQLPED--A 76
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNL 494
+ L L L+ N L+ + P A S L+ L+ L L +N L +P+++ S L + L
Sbjct: 77 FKNFPFLEELRLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSSLQSLRL 136
Query: 495 SHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
N + + +F +Q R H+ L N L + HP PT+Q+L LA N++ +
Sbjct: 137 DANHITSVPEDSFEGLTQLR--HLWLDDNSLTEVPVHPLS---NLPTLQALTLALNKISS 191
Query: 675 VPDLRDLPLR---YLSLDGNPLAAIGPGAFAGLAGL 773
+PD L L L N + ++G F GL L
Sbjct: 192 IPDFAFTNLSSLVVLHLHNNKIKSLGQHCFDGLDNL 227
>ref|XP_002693534.1| PREDICTED: leucine-rich repeat-containing G protein-coupled
receptor 4 [Bos taurus].
Length = 951
Score = 75.9 bits (185), Expect = 6e-14
Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 4/216 (1%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C C C+ + RVDCSG G VP + T LD+S N + + E A
Sbjct: 29 CAAPCSCDGDR----------RVDCSGKGLTAVPEGLSAFTQLLDISMNNITQLPED--A 76
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNL 494
+ L L L+ N L+ + P A S L+ L+ L L +N L +P+++ S L + L
Sbjct: 77 FKNFPFLEELRLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSSLQSLRL 136
Query: 495 SHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
N + + +F +Q R H+ L N L + HP PT+Q+L LA N++ +
Sbjct: 137 DANHITSVPEDSFEGLTQLR--HLWLDDNSLTEVPVHPLS---NLPTLQALTLALNKISS 191
Query: 675 VPDLRDLPLR---YLSLDGNPLAAIGPGAFAGLAGL 773
+PD L L L N + ++G F GL L
Sbjct: 192 IPDFAFTNLSSLVVLHLHNNKIKSLGQHCFDGLDNL 227
>ref|NP_001029481.1| asporin precursor [Bos taurus].
Length = 370
Score = 73.6 bits (179), Expect = 3e-13
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 1/202 (0%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V CS LG VP IP DT +DL +N+++ + E+
Sbjct: 65 CPFGCQCYSRV-----------VHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDF- 112
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLS 497
G T+L L L++N LT + P AF + L L LSHN L+ +P L+++ +
Sbjct: 113 -KGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLN--LPKSLAELRIH 169
Query: 498 HNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
N+++++ AT ALHV ++S N L P + T+ + +A +L +
Sbjct: 170 DNKVKKIQK---ATFKGMNALHVLEMSANPLDNNGIEP--GAFEGVTVFHIRIAEAKLTS 224
Query: 675 VPDLRDLPLRYLSLDGNPLAAI 740
+P L L LD N ++ +
Sbjct: 225 IPKELPSTLLELHLDYNKISVV 246
>ref|NP_001179210.1| leucine-rich repeat-containing protein 4B [Bos taurus].
Length = 711
Score = 70.1 bits (170), Expect = 3e-12
Identities = 75/270 (27%), Positives = 119/270 (44%), Gaps = 2/270 (0%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C C C S +RV C+ VP IP++T +L+L N ++ +
Sbjct: 57 CPAACSC---------SNQASRVICTRRELAEVPASIPVNTRYLNLQENGIQVIRTDTFK 107
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNL 494
+ + L LS NL+ + AF+ L L +L+L N L +P Q+F S L ++ L
Sbjct: 108 HLRHLEI--LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 165
Query: 495 SHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
+N + S+ ++A + +DL L+RL A ++ LNL L+
Sbjct: 166 RNNPIE--SIPSYAFNRVPSLRRLDLGE--LKRLEYISEAAFEGLVNLRYLNLGMCNLKD 221
Query: 675 VPDLRDLP-LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQ 851
+P+L L L L L GN L I PG+F GL L F +L+ L+
Sbjct: 222 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL-RKLWLMHAQVATIERNAFDDLKSLE 280
Query: 852 VLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
L+LS N L ++F+ L L+ + L+
Sbjct: 281 ELNLSHN-NLMSLPHDLFTPLHRLERVHLN 309
Score = 49.7 bits (117), Expect = 5e-06
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L+LS NRL+ + G T+L L L H + ++ AF L+ LE L+LSHN L +
Sbjct: 234 LELSGNRLDLIRPGSFQG--LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 291
Query: 447 LPAQSFTS-SPLSDVNLSHN 503
LP FT L V+L+HN
Sbjct: 292 LPHDLFTPLHRLERVHLNHN 311
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,424,981
Number of extensions: 1260789
Number of successful extensions: 8802
Number of sequences better than 1.0e-05: 109
Number of HSP's gapped: 8310
Number of HSP's successfully gapped: 177
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008513
(1135 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542296.2| PREDICTED: similar to tsukushi [Canis familiari... 520 e-147
Alignment gi|XP_542026.2| PREDICTED: similar to Fibromodulin precursor (F... 82 7e-16
Alignment gi|XP_545681.1| PREDICTED: similar to leucine rich repeat neuro... 82 9e-16
Alignment gi|XP_538355.2| PREDICTED: similar to Ran GTPase-activating pro... 77 2e-14
Alignment gi|XP_547189.2| PREDICTED: similar to insulin-like growth facto... 74 3e-13
Alignment gi|XP_542298.2| PREDICTED: similar to Leucine-rich repeat-conta... 72 7e-13
Alignment gi|XP_853321.1| PREDICTED: similar to Asporin precursor [Canis ... 72 1e-12
Alignment gi|XP_854692.1| PREDICTED: similar to leucine-rich alpha-2-glyc... 70 3e-12
Alignment gi|XP_865282.1| PREDICTED: similar to leucine rich repeat neuro... 70 3e-12
Alignment gi|XP_532819.2| PREDICTED: similar to malignant fibrous histioc... 70 4e-12
>ref|XP_542296.2| PREDICTED: similar to tsukushi [Canis familiaris].
Length = 357
Score = 520 bits (1339), Expect = e-147
Identities = 262/323 (81%), Positives = 276/323 (85%)
Frame = +3
Query: 114 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 293
S AQ TRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE
Sbjct: 16 SGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 75
Query: 294 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 473
TVNESVLAGPGYTTLAGLDLSHNLLTS+SPTAFSRLRYLESLD+SHNGLAALPA+SFT S
Sbjct: 76 TVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDISHNGLAALPAESFTCS 135
Query: 474 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 653
PLSDVNLSHNRLRE+SVSAF+THSQGRALHVDLSHNL+ RL PHPA ASLP PTIQSLNL
Sbjct: 136 PLSDVNLSHNRLREVSVSAFSTHSQGRALHVDLSHNLIHRLVPHPAGASLPTPTIQSLNL 195
Query: 654 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFR 833
AWNRLR +PDLRDLPLRYLSLDGNPLAA+GPGAF GLAGLT FR
Sbjct: 196 AWNRLRTIPDLRDLPLRYLSLDGNPLAAVGPGAFRGLAGLTHLSLGSLQGLPQLAPYGFR 255
Query: 834 ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVG 1013
EL+ LQVLDLSGNPKL WAGAEVFSGL SLQELDLSGT+ QSISVG
Sbjct: 256 ELQSLQVLDLSGNPKLKWAGAEVFSGLGSLQELDLSGTSLLPLPETLLIHLPALQSISVG 315
Query: 1014 QGVWCRRLVR*GTYPRQPGSTPR 1082
QG+ C+RLVR G YPRQPGS+P+
Sbjct: 316 QGMRCQRLVREGAYPRQPGSSPK 338
>ref|XP_542026.2| PREDICTED: similar to Fibromodulin precursor (FM) (Collagen-binding
59 kDa protein) (Keratan sulfate proteoglycan
fibromodulin) (KSPG fibromodulin) [Canis familiaris].
Length = 593
Score = 82.4 bits (202), Expect = 7e-16
Identities = 84/259 (32%), Positives = 110/259 (42%), Gaps = 23/259 (8%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
+P +P L L +N + V L+ T L L L HN LT L T FS+LR+
Sbjct: 222 LPPSLPPSLERLHLQNNLISKVPRGALSRQ--THLRELYLQHNQLTDSGLDATTFSKLRH 279
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
LE LDLSHN LA++PA L+ ++L NR+R V A ++ L HN L
Sbjct: 280 LEYLDLSHNQLASVPAG--LPRTLAVLHLGRNRIR--WVEAARLRGARGLRYLLLQHNQL 335
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
PA A P + +L+L N L VP LR L L N + +G AGL
Sbjct: 336 -GAEGLPAGALRPLRGLHTLHLYGNGLHRVPPALPRRLRALVLPHNHVTTLGARDLAGLR 394
Query: 768 GLT-XXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGA---------------- 896
GL FR LR L+ LDL+GN G
Sbjct: 395 GLAELNLAYNRLVSARVHRRAFRPLRALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLR 454
Query: 897 ----EVFSGLDSLQELDLS 941
E+ +GLD L+EL L+
Sbjct: 455 ALEPELLAGLDQLRELSLA 473
Score = 63.5 bits (153), Expect = 3e-10
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 3/250 (1%)
Frame = +3
Query: 132 RPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESV 311
R C P C C VDC+GL + P I HL L +N+L+ + +
Sbjct: 56 RACPPRCSCP----------RADTVDCNGLDLQVFPDNITRAAQHLSLQNNQLQELPYNE 105
Query: 312 LAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSD 485
L+ +L L+L +NL++S L AF L L+ + ++HN L+ P F L
Sbjct: 106 LS--RLRSLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAP--QFLPRSLRV 161
Query: 486 VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNR 665
+L+ N++ E+ F R++++ HN A P A + + +L+L+ NR
Sbjct: 162 ADLAANQVTEIFPLTFGEKPALRSVYL---HNNQLSNAGLPPDAFHGSEAVATLSLSSNR 218
Query: 666 LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELR 842
L +P L L L N ++ + GA + L F +LR
Sbjct: 219 LSYLPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLR 278
Query: 843 GLQVLDLSGN 872
L+ LDLS N
Sbjct: 279 HLEYLDLSHN 288
Score = 57.8 bits (138), Expect = 2e-08
Identities = 71/218 (32%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Frame = +3
Query: 216 GLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTA 389
G G H VP +P L L N + T+ LAG LA L+L++N L S + A
Sbjct: 358 GNGLHRVPPALPRRLRALVLPHNHVTTLGARDLAG--LRGLAELNLAYNRLVSARVHRRA 415
Query: 390 FSRLRYLESLDLSHNGLAALPA--------------QSFTSSP--------LSDVNLSHN 503
F LR L SLDL+ N L LP Q P L +++L+HN
Sbjct: 416 FRPLRALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLRALEPELLAGLDQLRELSLAHN 475
Query: 504 RLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAV-- 677
RLR + H +DLSHN L + P LP ++ L+L NR+ V
Sbjct: 476 RLRIGDIGPGTWHELQALQVLDLSHNELSFVPP-----DLP-EALEELHLQGNRIGHVGS 529
Query: 678 ------PDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL 773
P LR L LR L + +I P AF GL L
Sbjct: 530 EAFLSTPRLRALFLRANRLH---MTSIAPEAFLGLLHL 564
>ref|XP_545681.1| PREDICTED: similar to leucine rich repeat neuronal 5 precursor
[Canis familiaris].
Length = 712
Score = 82.0 bits (201), Expect = 9e-16
Identities = 89/323 (27%), Positives = 127/323 (39%), Gaps = 51/323 (15%)
Frame = +3
Query: 135 PCFPGCQCEVETFGLFDSF--SLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNES 308
PC P C C++ + S T VDC+ L VP +P T L L SN + V++S
Sbjct: 28 PCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPGLPAGTQTLLLQSNSIMRVDQS 87
Query: 309 VLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSD 485
L L LDLS N + F L L SL L N L L SF + L +
Sbjct: 88 ELNY--LANLTELDLSQNSFSDARDCDFRALPRLLSLHLEENRLTRLEDHSFAGLASLQE 145
Query: 486 VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRL----------------APHPARA 617
+ L+HN+L ++ AFA G L + L+ NLL+ + + A
Sbjct: 146 LYLNHNQLYRIAPRAFA--GLGNLLRLHLNSNLLRAIDSRWFEMLPNLEILMIGGNKVDA 203
Query: 618 SL-----PAPTIQSLNLAWNRLRAVPD--------------------------LRDLP-L 701
L P ++SL LA LR + D L +P L
Sbjct: 204 ILDMNFRPLANLRSLVLAGMNLREISDYALEGLQSLESLSFYDNQLARVPRRALEQVPGL 263
Query: 702 RYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKL 881
++L L+ NPL +GPG FA + L L L LD++ NP+L
Sbjct: 264 KFLDLNKNPLQRVGPGDFANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRL 323
Query: 882 TWAGAEVFSGLDSLQELDLSGTA 950
++ F L ++ L L+ A
Sbjct: 324 SFIHPRAFHHLPQMETLMLNNNA 346
>ref|XP_538355.2| PREDICTED: similar to Ran GTPase-activating protein 1 [Canis
familiaris].
Length = 1323
Score = 77.4 bits (189), Expect = 2e-14
Identities = 77/240 (32%), Positives = 98/240 (40%), Gaps = 25/240 (10%)
Frame = +3
Query: 126 ATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNE 305
A PC PGC C E+ C G VP P T LDL N +V
Sbjct: 971 AAVPCPPGCVCASES---------RHSGCESRGLRAVPRGFPSHTQLLDLRRNHFPSVPR 1021
Query: 306 SVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP-LS 482
+ A PG L L L H + L A + L L L LS N LA L A + +P L+
Sbjct: 1022 A--AFPGLGGLVSLHLQHCGIAELEAGALAGLASLIYLYLSDNRLAGLSAAALEGAPRLA 1079
Query: 483 DVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL------------- 623
+ L NR + + +A +LH L HN ++RL P S
Sbjct: 1080 YLYLERNRFQRVPGTALRALPGLFSLH--LQHNAVERLEPGDLAGSQALRWLYLSANRIS 1137
Query: 624 --------PAPTIQSLNLAWNRLRAVPD--LRDLP-LRYLSLDGNPLAAIGPGAFAGLAG 770
PAP ++ L L N+L+ VP L LP L L L GNPL A+ GAF + G
Sbjct: 1138 HVSPGAIGPAPDLEKLYLDRNQLQGVPTVALEGLPTLLELQLSGNPLRALPDGAFRPVGG 1197
Score = 71.2 bits (173), Expect = 2e-12
Identities = 63/168 (37%), Positives = 81/168 (48%), Gaps = 4/168 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L+L+SNRL ++ + L G G +L LDL N+L L P F L L +L+L+HN L
Sbjct: 697 LNLASNRLSSLPQEALDGLG--SLQRLDLERNVLEELRPGTFGALGALTTLNLAHNALVY 754
Query: 447 LPAQSFTSSPLSD-VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL 623
LPA +F P + + LSHN L L A A R L L HN LQ L P A
Sbjct: 755 LPAMTFQGLPRARWLRLSHNALSVLDPEALAGLPALRRL--SLQHNELQAL---PGLALS 809
Query: 624 PAPTIQSLNLAWNRLRAVPDLRDLP---LRYLSLDGNPLAAIGPGAFA 758
A + L L N V + L LR L+L+ L A+ AFA
Sbjct: 810 QARALARLELGHNPFTYVGEEDGLALPGLRELTLEHGALQALDARAFA 857
Score = 67.0 bits (162), Expect = 3e-11
Identities = 67/202 (33%), Positives = 88/202 (43%), Gaps = 4/202 (1%)
Frame = +3
Query: 345 LDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNLSHNRLRELS 521
LDL NLL + P AF L YL LDL H + + +F L +NL+ NRL L
Sbjct: 649 LDLQGNLLKVIPPAAFRDLPYLTHLDLRHCQVELVAEGAFRGLGRLQILNLASNRLSSLP 708
Query: 522 VSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDL--RDL 695
A G +DL N+L+ L P A + +LNLA N L +P + + L
Sbjct: 709 QEAL--DGLGSLQRLDLERNVLEELRPGTFGA---LGALTTLNLAHNALVYLPAMTFQGL 763
Query: 696 P-LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGN 872
P R+L L N L+ + P A AGL L + R L L+L N
Sbjct: 764 PRARWLRLSHNALSVLDPEALAGLPAL-RRLSLQHNELQALPGLALSQARALARLELGHN 822
Query: 873 PKLTWAGAEVFSGLDSLQELDL 938
P T+ G E L L+EL L
Sbjct: 823 P-FTYVGEEDGLALPGLRELTL 843
Score = 58.2 bits (139), Expect = 1e-08
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L N +E + LAG L L LS N ++ +SP A LE L L N L
Sbjct: 1105 LHLQHNAVERLEPGDLAGS--QALRWLYLSANRISHVSPGAIGPAPDLEKLYLDRNQLQG 1162
Query: 447 LPAQSFTSSP-LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL 623
+P + P L ++ LS N LR L AF G H+ L+ + L++++P A + L
Sbjct: 1163 VPTVALEGLPTLLELQLSGNPLRALPDGAFRPVG-GSLQHLFLNSSGLEQISPR-AFSGL 1220
Query: 624 PAPTIQSLNLAWNRLRAVPDLRDL-PLRYLSLDGNP 728
P +QSL+L N+L+A+P L L L + L GNP
Sbjct: 1221 -GPWLQSLHLQKNQLQAMPALPHLSQLELIDLSGNP 1255
>ref|XP_547189.2| PREDICTED: similar to insulin-like growth factor binding protein,
acid labile subunit [Canis familiaris].
Length = 676
Score = 73.9 bits (180), Expect = 3e-13
Identities = 74/227 (32%), Positives = 96/227 (42%), Gaps = 1/227 (0%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
LDLS NR+ + E PG L L LSHN + L P F L +LE L L HN +
Sbjct: 342 LDLSHNRVAGLLEDTF--PGLLGLHVLRLSHNAIAGLRPRTFRDLHFLEELRLGHNRIRQ 399
Query: 447 LPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL 623
LP ++F L + L+ N++RE+ AF + +LS N L+ SL
Sbjct: 400 LPDKAFEGLGQLEVLTLNDNQIREIEAGAFVGLLSVAVM--NLSGNCLR---------SL 448
Query: 624 PAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXX 803
P T Q L L L L+ L + P AFAGL+GL
Sbjct: 449 PERTFQGLG---------------RLHSLHLERGCLGRVRPHAFAGLSGLRRLFLKHNGI 493
Query: 804 XXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSG 944
+ L L LDL+ N +LT A F GL L+ L LSG
Sbjct: 494 TAVDEQGLW-GLAELLELDLTAN-RLTHLPARAFQGLGKLEYLLLSG 538
Score = 65.9 bits (159), Expect = 7e-11
Identities = 61/171 (35%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Frame = +3
Query: 252 LDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSH 431
L A ++LS N L ++ E G G L L L L + P AF+ L L L L H
Sbjct: 433 LSVAVMNLSGNCLRSLPERTFQGLG--RLHSLHLERGCLGRVRPHAFAGLSGLRRLFLKH 490
Query: 432 NGLAALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHP 608
NG+ A+ Q + L +++L+ NRL L AF G+ ++ LS N L LA
Sbjct: 491 NGITAVDEQGLWGLAELLELDLTANRLTHLPARAF--QGLGKLEYLLLSGNQLAALAADS 548
Query: 609 ARASLPAPTIQSLNLAWNRLRAVPD--LRDL-PLRYLSLDGNPLAAIGPGA 752
R P + L+++ NRL A+PD L +L LRYLSL N L P A
Sbjct: 549 LR---PLRRLFWLDVSHNRLEALPDGELAELGQLRYLSLTNNSLRIFTPPA 596
Score = 64.3 bits (155), Expect = 2e-10
Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L+ N+L + + G G L LDLS N L S+ F +L L+ L L HN +AA
Sbjct: 270 LVLAGNKLAYLQPPLFCGLG--ELRELDLSRNALRSVKANVFVKLPKLQKLYLDHNVIAA 327
Query: 447 LPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARAS 620
+ +F L ++LSHNR+ L F LHV LSHN + L P R
Sbjct: 328 VAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGL---LGLHVLRLSHNAIAGLRPRTFR-- 382
Query: 621 LPAPTIQSLNLAWNRLRAVPD--LRDL-PLRYLSLDGNPLAAIGPGAFAGL 764
++ L L NR+R +PD L L L+L+ N + I GAF GL
Sbjct: 383 -DLHFLEELRLGHNRIRQLPDKAFEGLGQLEVLTLNDNQIREIEAGAFVGL 432
Score = 63.5 bits (153), Expect = 3e-10
Identities = 72/231 (31%), Positives = 101/231 (43%), Gaps = 5/231 (2%)
Frame = +3
Query: 264 HLDLSSNRLETVN-ESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGL 440
HL L N+L + + L PG LA L LS+N+L + F L L L L NGL
Sbjct: 197 HLHLERNQLRGLGAHTFLHTPG---LASLGLSNNMLGRVDEGLFRGLADLWDLHLGWNGL 253
Query: 441 AALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARA 617
A LP +F + L ++ L+ N+L L F G +DLS N L+ + A
Sbjct: 254 AVLPDAAFQGLASLRELVLAGNKLAYLQPPLFC--GLGELRELDLSRNALRSV---KANV 308
Query: 618 SLPAPTIQSLNLAWNRLRAVPD---LRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXX 788
+ P +Q L L N + AV L LR+L L N +A + F GL GL
Sbjct: 309 FVKLPKLQKLYLDHNVIAAVAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGL-HVLR 367
Query: 789 XXXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
FR+L L+ L L G+ ++ + F GL L+ L L+
Sbjct: 368 LSHNAIAGLRPRTFRDLHFLEELRL-GHNRIRQLPDKAFEGLGQLEVLTLN 417
>ref|XP_542298.2| PREDICTED: similar to Leucine-rich repeat-containing protein 32
precursor (GARP protein) (Garpin) (Glycoprotein A
repetitions predominant) [Canis familiaris].
Length = 673
Score = 72.4 bits (176), Expect = 7e-13
Identities = 70/187 (37%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Frame = +3
Query: 210 CSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGP--GYTTLAGLDLSHNLLTSLSP 383
C GLG VP +PLD LDLS N+L+ S+LA P YT L LDLS N ++ +
Sbjct: 68 CQGLGLLQVPSMLPLDIEALDLSGNQLQ----SILASPLGFYTALRRLDLSTNEISFIYT 123
Query: 384 TAFSRLRYLESLDLSHNGLAA---LPAQSFTSSP-LSDVNLSHNRLRELSVSAFATHSQG 551
F L +LE L+L+HN LA L A S P ++ ++LS N L V +
Sbjct: 124 GVFQALPHLEHLNLAHNNLAVGTMLNAPSLGPLPHVTSLDLSGNSLYSGLVEQLL--GEA 181
Query: 552 RALH-VDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPD--LRDLP-LRYLSLD 719
AL + L+ N L RLA H R + P ++ L+L N L + D LP L +L+L
Sbjct: 182 PALRTLSLAENSLTRLARHTFRGT---PALERLDLHSNVLMDIEDGAFEALPHLAHLNLS 238
Query: 720 GNPLAAI 740
N L I
Sbjct: 239 RNSLTCI 245
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Frame = +3
Query: 243 PIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLD 422
P+P T+ LDLS N L + L G L L L+ N LT L+ F LE LD
Sbjct: 155 PLPHVTS-LDLSGNSLYSGLVEQLLGEA-PALRTLSLAENSLTRLARHTFRGTPALERLD 212
Query: 423 LSHNGLAALPAQSFTSSP-LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQ--R 593
L N L + +F + P L+ +NLS N S++ + S + +DLS N ++ +
Sbjct: 213 LHSNVLMDIEDGAFEALPHLAHLNLSRN-----SLTCISDFSLQQLRVLDLSCNSIEAFQ 267
Query: 594 LAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLP-LRYLSLDGN 725
+AP P + L+L NRL PDL LP L YL++ N
Sbjct: 268 VAPEPQAEY----QLAWLDLRENRLLRFPDLAALPRLIYLNMSNN 308
>ref|XP_853321.1| PREDICTED: similar to Asporin precursor [Canis familiaris].
Length = 372
Score = 71.6 bits (174), Expect = 1e-12
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 1/202 (0%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V CS LG VP IP DT +DL +N+++ + E+
Sbjct: 67 CPFGCQCYSRV-----------VHCSDLGLSSVPSNIPFDTQMIDLQNNKIKEIKENDF- 114
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLS 497
G T+L L L++N LT + P AF + L L LSHN L+ +P L+++ +
Sbjct: 115 -KGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPFN--LPKSLAELRIH 171
Query: 498 HNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
N+++++ F + LHV ++S N L P + T+ + +A +L +
Sbjct: 172 DNKVKKIQKETFKGMN---TLHVLEMSANPLDNNGIEP--GAFEGVTVFHIRIAEAKLTS 226
Query: 675 VPDLRDLPLRYLSLDGNPLAAI 740
+P L L LD N ++ +
Sbjct: 227 IPKELPSTLLELHLDYNKISTV 248
>ref|XP_854692.1| PREDICTED: similar to leucine-rich alpha-2-glycoprotein 1 [Canis
familiaris].
Length = 347
Score = 70.5 bits (171), Expect = 3e-12
Identities = 85/251 (33%), Positives = 114/251 (45%), Gaps = 10/251 (3%)
Frame = +3
Query: 165 ETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAG 344
+T +F S + + V C P +P P DT HL + L + L G + L
Sbjct: 41 DTCLVFPSSNGSSVSCHP--PAKLPHHFPSDTVHLVVEFFNLTQLRPDTLQG--VSNLQE 96
Query: 345 LDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSF-TSSPLSDVNLSHNRLRELS 521
L LS N L SLSP + L+ LDL+ N L LP F S+ L + L NRL L
Sbjct: 97 LHLSTNQLESLSPKLLLPVPLLKVLDLTRNALTQLPPGLFRVSAALHTLVLKENRLEVLE 156
Query: 522 VSAFATHSQGRAL-HVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP-DLRDL 695
S +AL H+DLS N LQ L P A++ A ++ L+L+ N+L+ +P DL
Sbjct: 157 PSWLCGL---KALGHLDLSGNHLQTLPP-GLLANVTA--LRILDLSNNQLKTLPLDLLRG 210
Query: 696 PLRY--LSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSG 869
PL+ L L+GN L + G A GL FR L+ L +LDLS
Sbjct: 211 PLQLERLHLEGNRLQVLEEGLLAPQPGL-RYLFLSDNKLAAVAAGAFRGLQQLDMLDLSN 269
Query: 870 N-----PKLTW 887
N PK W
Sbjct: 270 NSLTSVPKGLW 280
>ref|XP_865282.1| PREDICTED: similar to leucine rich repeat neuronal 6C isoform 2
[Canis familiaris].
Length = 560
Score = 70.5 bits (171), Expect = 3e-12
Identities = 83/298 (27%), Positives = 126/298 (42%), Gaps = 26/298 (8%)
Frame = +3
Query: 126 ATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNE 305
+T C C+C + V C +P IP++T LDLS NRL++VN
Sbjct: 24 STIGCPARCECSAQN---------KSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNP 74
Query: 306 SVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLS 482
Y L +DLS N++ ++ P AF+ L L SL L N L +P FT S L+
Sbjct: 75 EEFI--SYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLT 132
Query: 483 DVNLSHNR---------------------LRELSVSAFATHSQGRALHV-DLSHNLLQRL 596
+++S N+ L+ L+++ ++ R H+ L + L
Sbjct: 133 KLDISENKIVILLDYMFQDLHNLNLISLHLKHLNINNMPVYAFKRLFHLKHLEIDYWPLL 192
Query: 597 APHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRY---LSLDGNPLAAIGPGAFAGLA 767
PA SL + SL++ L VP L L Y L+L NP++ I G F+ L
Sbjct: 193 DMMPAN-SLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSELI 251
Query: 768 GLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
L F+ LR L+VL++S N L VFS +L+ L ++
Sbjct: 252 RL-QELHIVGAQLRTIEPHSFQGLRFLRVLNVSQN-LLETLEENVFSSPRALEVLSIN 307
>ref|XP_532819.2| PREDICTED: similar to malignant fibrous histiocytoma amplified
sequence 1 [Canis familiaris].
Length = 1074
Score = 70.1 bits (170), Expect = 4e-12
Identities = 64/183 (34%), Positives = 89/183 (48%), Gaps = 4/183 (2%)
Frame = +3
Query: 336 LAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRE 515
L LD+SHN L++L A S LR L L+LSHN L ALPAQ + L ++++S NRL
Sbjct: 145 LTELDVSHNRLSALGAEAVSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAH 204
Query: 516 L--SVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP-DL 686
L S+S R +D+ HN L R L ++ L+++ NRLR +P D+
Sbjct: 205 LPDSLSCLL-----RLRTLDVDHNQLTAF----PRQLLQLAALEELDVSSNRLRGLPEDI 255
Query: 687 RDL-PLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDL 863
L L+ L L G L + P F LA L F L+ L++L+L
Sbjct: 256 SALRALKILWLSGAELGTL-PSGFCELASL--ESLMLDNNGLRALPAQFSRLQRLKMLNL 312
Query: 864 SGN 872
S N
Sbjct: 313 SSN 315
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,064,934
Number of extensions: 1290040
Number of successful extensions: 8670
Number of sequences better than 1.0e-05: 80
Number of HSP's gapped: 8211
Number of HSP's successfully gapped: 117
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008513
(1135 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129721.1| PREDICTED: tsukushin-like isoform 2 [Sus scr... 565 e-168
Alignment gi|XP_003129720.1| PREDICTED: tsukushin-like isoform 1 [Sus scr... 565 e-168
Alignment gi|XP_003130149.2| PREDICTED: leucine-rich repeat neuronal prot... 82 5e-16
Alignment gi|XP_003123408.1| PREDICTED: podocan-like protein 1-like [Sus ... 77 2e-14
Alignment gi|XP_003122954.1| PREDICTED: leucine-rich repeat-containing G-... 74 2e-13
Alignment gi|NP_001230818.1| asporin [Sus scrofa]. 74 2e-13
Alignment gi|XP_003129719.1| PREDICTED: leucine-rich repeat-containing pr... 73 3e-13
Alignment gi|XP_003356057.1| PREDICTED: leucine-rich repeat-containing pr... 70 2e-12
Alignment gi|NP_001041651.1| insulin-like growth factor-binding protein c... 70 2e-12
Alignment gi|XP_001924493.1| PREDICTED: leucine-rich repeat transmembrane... 69 6e-12
>ref|XP_003129721.1| PREDICTED: tsukushin-like isoform 2 [Sus scrofa].
Length = 357
Score = 565 bits (1456), Expect(2) = e-168
Identities = 288/323 (89%), Positives = 290/323 (89%)
Frame = +3
Query: 114 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 293
SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE
Sbjct: 16 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 75
Query: 294 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 473
TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS
Sbjct: 76 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 135
Query: 474 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 653
PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL
Sbjct: 136 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 195
Query: 654 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFR 833
AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLT FR
Sbjct: 196 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTHLSLGGLQGLPQLAPHGFR 255
Query: 834 ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVG 1013
ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTA QS+SVG
Sbjct: 256 ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTALVPLPEKLLLHLPALQSVSVG 315
Query: 1014 QGVWCRRLVR*GTYPRQPGSTPR 1082
QGVWCRRLVR GTYPRQPGSTP+
Sbjct: 316 QGVWCRRLVREGTYPRQPGSTPK 338
Score = 45.4 bits (106), Expect(2) = e-168
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 1076 PKVALHCIDTGEAAPGGPDI 1135
PKVALHCIDTGE APGGPDI
Sbjct: 337 PKVALHCIDTGEPAPGGPDI 356
>ref|XP_003129720.1| PREDICTED: tsukushin-like isoform 1 [Sus scrofa].
Length = 357
Score = 565 bits (1456), Expect(2) = e-168
Identities = 288/323 (89%), Positives = 290/323 (89%)
Frame = +3
Query: 114 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 293
SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE
Sbjct: 16 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 75
Query: 294 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 473
TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS
Sbjct: 76 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 135
Query: 474 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 653
PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL
Sbjct: 136 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 195
Query: 654 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFR 833
AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLT FR
Sbjct: 196 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTHLSLGGLQGLPQLAPHGFR 255
Query: 834 ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVG 1013
ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTA QS+SVG
Sbjct: 256 ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTALVPLPEKLLLHLPALQSVSVG 315
Query: 1014 QGVWCRRLVR*GTYPRQPGSTPR 1082
QGVWCRRLVR GTYPRQPGSTP+
Sbjct: 316 QGVWCRRLVREGTYPRQPGSTPK 338
Score = 45.4 bits (106), Expect(2) = e-168
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 1076 PKVALHCIDTGEAAPGGPDI 1135
PKVALHCIDTGE APGGPDI
Sbjct: 337 PKVALHCIDTGEPAPGGPDI 356
>ref|XP_003130149.2| PREDICTED: leucine-rich repeat neuronal protein 2 [Sus scrofa].
Length = 712
Score = 82.0 bits (201), Expect = 5e-16
Identities = 91/324 (28%), Positives = 128/324 (39%), Gaps = 52/324 (16%)
Frame = +3
Query: 135 PCFPGCQCEVETFGLFDSF--SLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNES 308
PC P C C++ + S T VDC+ L VP +P T L L SN + V++
Sbjct: 28 PCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPALPAGTQTLLLQSNSIVRVDQG 87
Query: 309 VLAGPGY-TTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLS 482
L GY L LDLS N + F L L SL L N L L SF + L
Sbjct: 88 EL---GYLANLTELDLSQNSFSDTRDCDFRALPQLLSLHLEENQLTRLEDHSFAGLASLQ 144
Query: 483 DVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQR----------------LAPHPAR 614
++ L+HN+L ++ AFA S LH L+ NLL+ + +
Sbjct: 145 ELYLNHNQLYRIAPRAFAGLSNLLRLH--LNSNLLRAVDSRWFEMLPNLEILMIGGNRVD 202
Query: 615 ASL-----PAPTIQSLNLAWNRLRAVPD--------------------------LRDLP- 698
A L P ++SL LA LR + D L +P
Sbjct: 203 AILDMNFRPLANLRSLVLAGMNLREISDYALEGLQSLESLSFYDNRLARVPRRALEQVPG 262
Query: 699 LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPK 878
L++L L+ NPL +GPG FA + L L L LD++ NP+
Sbjct: 263 LKFLDLNKNPLQRVGPGDFANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPR 322
Query: 879 LTWAGAEVFSGLDSLQELDLSGTA 950
L++ F L ++ L L+ A
Sbjct: 323 LSFIHPRAFHHLPQMETLMLNNNA 346
>ref|XP_003123408.1| PREDICTED: podocan-like protein 1-like [Sus scrofa].
Length = 593
Score = 77.0 bits (188), Expect = 2e-14
Identities = 83/259 (32%), Positives = 106/259 (40%), Gaps = 23/259 (8%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
VP +P L L +N + V L+ T L L L HN LT L T FS+L
Sbjct: 222 VPPSLPPSLERLHLQNNIISKVPRGALSRQ--THLRELYLQHNQLTDSGLDATTFSKLHR 279
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
LE LDLSHN LA +PA L+ ++L NR+R V A ++ L HN L
Sbjct: 280 LEYLDLSHNQLATVPAG--LPHTLAVLHLGRNRIR--WVEAARLRGMRGLRYLLLQHNQL 335
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
PARA P + +L+L N L +P LR L L N + +G A
Sbjct: 336 GATG-LPARALRPLRGLHTLHLYGNGLDRMPQALPRHLRSLVLPHNHVTMLGARDLAATP 394
Query: 768 GLT-XXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNP--------------------KLT 884
GL FR LR L+ LDL+GN +L
Sbjct: 395 GLAELNLAYNHLASARVHRRAFRRLRALRSLDLAGNQLTQLPAGLPASLNTLRLQRNQLR 454
Query: 885 WAGAEVFSGLDSLQELDLS 941
E +GLD LQEL L+
Sbjct: 455 VLEPEPLAGLDQLQELSLA 473
Score = 65.9 bits (159), Expect = 4e-11
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 6/227 (2%)
Frame = +3
Query: 216 GLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAG-PGYTTLAGLDLSHNLLTS--LSPT 386
G G +P +P L L N + + LA PG LA L+L++N L S +
Sbjct: 358 GNGLDRMPQALPRHLRSLVLPHNHVTMLGARDLAATPG---LAELNLAYNHLASARVHRR 414
Query: 387 AFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHV 566
AF RLR L SLDL+ N L LPA + L+ + L N+LR L A Q + L
Sbjct: 415 AFRRLRALRSLDLAGNQLTQLPAG--LPASLNTLRLQRNQLRVLEPEPLAGLDQLQEL-- 470
Query: 567 DLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLP--LRYLSLDGNPLAAI 740
L+HN L R+ P +Q L+L+ N L VP DLP L L L GN ++ +
Sbjct: 471 SLAHNRL-RVGDIGPGTWHELPALQVLDLSHNELSFVPP--DLPEALEELHLQGNRISHV 527
Query: 741 GPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPK 878
GP AF L F L L+++D +GNP+
Sbjct: 528 GPEAFISTPRLRALFLRANRLHMTSISPEAFLGLPHLRMVDTTGNPE 574
Score = 62.4 bits (150), Expect = 4e-10
Identities = 68/254 (26%), Positives = 104/254 (40%), Gaps = 3/254 (1%)
Frame = +3
Query: 132 RPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESV 311
R C P C C VDC GL + P I HL L +N+L+ + +
Sbjct: 56 RACPPRCSCP----------RADTVDCDGLELRVFPDNITRAAQHLSLQNNQLQELPYNE 105
Query: 312 LAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSD 485
L+ + L L+L +NL++S L AF L L+ + ++HN L+ P F L
Sbjct: 106 LS--RLSDLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNRLSVAP--QFLPRSLRV 161
Query: 486 VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNR 665
+L+ N + E+ F R++++ HN A P A + + +L+L+ NR
Sbjct: 162 ADLAANEVTEIFPLTFGEKPALRSVYL---HNNQLSNAGLPPDAFRGSEAVATLSLSSNR 218
Query: 666 LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELR 842
L VP L L L N ++ + GA + L F +L
Sbjct: 219 LSYVPPSLPPSLERLHLQNNIISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLH 278
Query: 843 GLQVLDLSGNPKLT 884
L+ LDLS N T
Sbjct: 279 RLEYLDLSHNQLAT 292
>ref|XP_003122954.1| PREDICTED: leucine-rich repeat-containing G-protein coupled
receptor 4 [Sus scrofa].
Length = 951
Score = 73.6 bits (179), Expect = 2e-13
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 12/221 (5%)
Frame = +3
Query: 147 GCQCEVETFGLFDSFSLT--------RVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVN 302
G +C E G S RVDCSG G VP + T LD+S N + +
Sbjct: 14 GLRCSAEPSGAAPSLCSAPCSCDGDRRVDCSGKGLTAVPEGLSAFTQALDISMNNITQLP 73
Query: 303 ESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPL 479
E A + L L L+ N L+ + P A S L+ L+ L L +N L +P+++ S L
Sbjct: 74 ED--AFKNFPFLEELRLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSAL 131
Query: 480 SDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAW 659
+ L N + + +F +Q R H+ L N L + P + PT+Q+L LA
Sbjct: 132 QSLRLDANHITSVPEDSFEGLTQLR--HLWLDDNSLTEV---PVQPLSNLPTLQALTLAL 186
Query: 660 NRLRAVPDLRDLPLR---YLSLDGNPLAAIGPGAFAGLAGL 773
N++ ++PD L L L N + ++G F GL L
Sbjct: 187 NKISSIPDFAFTNLSSLVVLHLHNNKIKSLGQHCFDGLDNL 227
>ref|NP_001230818.1| asporin [Sus scrofa].
Length = 370
Score = 73.6 bits (179), Expect = 2e-13
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 1/202 (0%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V CS LG VP IP DT +DL +N+++ + E+
Sbjct: 65 CPFGCQCYSRV-----------VHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDF- 112
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLS 497
G T+L L L++N LT + P AF + L L LSHN L+ +P L+++ +
Sbjct: 113 -KGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLN--LPKSLAELRIH 169
Query: 498 HNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
N+++++ F + ALHV ++S N L P + T+ + +A +L +
Sbjct: 170 ENKVKKIQKETFKGMN---ALHVLEMSANPLDNNGIEP--GAFEGVTVFHIRIAEAKLTS 224
Query: 675 VPDLRDLPLRYLSLDGNPLAAI 740
+P L L LD N ++ +
Sbjct: 225 IPKELPSTLLELHLDYNKISTV 246
>ref|XP_003129719.1| PREDICTED: leucine-rich repeat-containing protein 32 [Sus scrofa].
Length = 663
Score = 73.2 bits (178), Expect = 3e-13
Identities = 72/187 (38%), Positives = 92/187 (49%), Gaps = 10/187 (5%)
Frame = +3
Query: 210 CSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTA 389
C GLG VP + D LDLS N+L ++ S L Y L LDLS N ++SL P A
Sbjct: 36 CQGLGLLQVPSMLARDIEALDLSGNQLRSIPASPLGF--YVALRRLDLSANEISSLQPGA 93
Query: 390 FSRLRYLESLDLSHNGLA---ALPAQSFTSSP-LSDVNLSHNRLRELSVSAFATHSQGRA 557
F L +LE L+L+HN LA AL A P L+ ++LS N L S A G A
Sbjct: 94 FQALPHLEHLNLAHNRLAQGMALGAGGLGPLPHLTALDLSGNSL----YSGLAEQLLGEA 149
Query: 558 ---LHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPD--LRDLP-LRYLSLD 719
+ L+ N L RLA H R AP ++ L+L N L + D LP L +L+L
Sbjct: 150 PALRTLSLAENSLTRLARHTFRG---APALEWLDLHSNVLMDIEDGAFEALPRLAHLNLS 206
Query: 720 GNPLAAI 740
N L I
Sbjct: 207 RNSLTCI 213
Score = 52.0 bits (123), Expect = 6e-07
Identities = 58/178 (32%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Frame = +3
Query: 264 HLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLA 443
+LDLS N +E V E L T+L L+LS N L + L L LD+SHN L
Sbjct: 320 NLDLSYNEIELVPEGFLEH--LTSLRFLNLSRNCLQAFRAWGAGSLPCLMRLDISHNALE 377
Query: 444 ALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQ------RLAPH 605
L + L + L N L +L AFA S ++L N + P
Sbjct: 378 KLELGAGALGSLRTLLLQDNALWDLPPYAFA--SLASLQRLNLQGNRISPCGGPGEPGPS 435
Query: 606 PARASLPAPTIQSLNLAWNR---LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAG 770
A +++ LNL N+ LRA L PL L L NP + GA AGL G
Sbjct: 436 GCVAFSGISSLRFLNLVDNKVETLRAGAFLH-TPLTELDLSANPGLDVATGALAGLEG 492
>ref|XP_003356057.1| PREDICTED: leucine-rich repeat-containing protein 4B [Sus scrofa].
Length = 721
Score = 70.1 bits (170), Expect = 2e-12
Identities = 75/270 (27%), Positives = 119/270 (44%), Gaps = 2/270 (0%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C C C S +RV C+ VP IP++T +L+L N ++ +
Sbjct: 57 CPAACSC---------SNQASRVICTRRELAEVPASIPVNTRYLNLQENGIQVIRTDTFK 107
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNL 494
+ + L LS NL+ + AF+ L L +L+L N L +P Q+F S L ++ L
Sbjct: 108 HLRHLEI--LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 165
Query: 495 SHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
+N + S+ ++A + +DL L+RL A ++ LNL L+
Sbjct: 166 RNNPIE--SIPSYAFNRVPSLRRLDLGE--LKRLEYISEAAFEGLVNLRYLNLGMCNLKD 221
Query: 675 VPDLRDLP-LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQ 851
+P+L L L L L GN L I PG+F GL L F +L+ L+
Sbjct: 222 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL-RKLWLMHAQVATIERNAFDDLKSLE 280
Query: 852 VLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
L+LS N L ++F+ L L+ + L+
Sbjct: 281 ELNLSHN-NLMSLPHDLFTPLHRLERVHLN 309
Score = 49.7 bits (117), Expect = 3e-06
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L+LS NRL+ + G T+L L L H + ++ AF L+ LE L+LSHN L +
Sbjct: 234 LELSGNRLDLIRPGSFQG--LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 291
Query: 447 LPAQSFTS-SPLSDVNLSHN 503
LP FT L V+L+HN
Sbjct: 292 LPHDLFTPLHRLERVHLNHN 311
>ref|NP_001041651.1| insulin-like growth factor-binding protein complex acid labile
subunit [Sus scrofa].
Length = 606
Score = 70.1 bits (170), Expect = 2e-12
Identities = 71/210 (33%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Frame = +3
Query: 324 GYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP-LSDVNLSH 500
G L LDLSHN + L F L L L L+HN LA+L ++F L ++ L H
Sbjct: 264 GMKALRWLDLSHNRVGGLLEDTFPGLLGLHVLRLAHNALASLRPRTFKDLHFLEELQLGH 323
Query: 501 NRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP 680
NRLR+L AF G+ + L+ N +Q + A A L + +NL+ N LR +P
Sbjct: 324 NRLRQLPEKAF--EGLGQLEVLALNDNQIQEI---KAGAFLGLFNVAVMNLSGNCLRNLP 378
Query: 681 D--LRDL-PLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQ 851
+ R L L L L+ + L +G FAGL+GL + L L
Sbjct: 379 EQVFRGLGKLHSLHLEHSCLGRVGLHTFAGLSGLRRLFLKDNGLEAIDEQSLW-GLAELL 437
Query: 852 VLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
LDL+ N +LT +F GL L+ L LS
Sbjct: 438 ELDLTAN-RLTHLPGRLFQGLGKLEYLLLS 466
Score = 65.5 bits (158), Expect = 5e-11
Identities = 75/229 (32%), Positives = 100/229 (43%), Gaps = 5/229 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L+ N+L + ++ G G L LDLS N L S+ F +L L+ L L HN LAA
Sbjct: 199 LVLAGNKLTYLQPALFCGLG--ELRELDLSRNALRSVKANVFVKLPKLQKLYLDHNLLAA 256
Query: 447 LPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARAS 620
+ +F L ++LSHNR+ L F LHV L+HN L L P R
Sbjct: 257 VAPGAFLGMKALRWLDLSHNRVGGLLEDTFPGL---LGLHVLRLAHNALASLRP---RTF 310
Query: 621 LPAPTIQSLNLAWNRLRAVPD--LRDL-PLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXX 791
++ L L NRLR +P+ L L L+L+ N + I GAF GL +
Sbjct: 311 KDLHFLEELQLGHNRLRQLPEKAFEGLGQLEVLALNDNQIQEIKAGAFLGLFNVA-VMNL 369
Query: 792 XXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDL 938
FR L L L L + L G F+GL L+ L L
Sbjct: 370 SGNCLRNLPEQVFRGLGKLHSLHLE-HSCLGRVGLHTFAGLSGLRRLFL 417
Score = 60.1 bits (144), Expect = 2e-09
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 4/168 (2%)
Frame = +3
Query: 255 DTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHN 434
+ A ++LS N L + E V G G L L L H+ L + F+ L L L L N
Sbjct: 363 NVAVMNLSGNCLRNLPEQVFRGLG--KLHSLHLEHSCLGRVGLHTFAGLSGLRRLFLKDN 420
Query: 435 GLAALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPA 611
GL A+ QS + L +++L+ NRL L F G+ ++ LS N RL+ PA
Sbjct: 421 GLEAIDEQSLWGLAELLELDLTANRLTHLPGRLF--QGLGKLEYLLLSRN---RLSALPA 475
Query: 612 RASLPAPTIQSLNLAWNRLRAVPDLRDLP---LRYLSLDGNPLAAIGP 746
A P L+++ NRL+A+P+ P LRYLSL N L P
Sbjct: 476 DALGPLQRTFWLDVSHNRLQALPEAVLAPLGQLRYLSLRNNSLRTFVP 523
Score = 53.1 bits (126), Expect = 3e-07
Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L N LE ++E L G L LDL+ N LT L F L LE L LS N L+A
Sbjct: 415 LFLKDNGLEAIDEQSLWG--LAELLELDLTANRLTHLPGRLFQGLGKLEYLLLSRNRLSA 472
Query: 447 LPAQSFTSSPLSD---VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHP 608
LPA + PL +++SHNRL+ L + A Q R ++ L +N L+ P P
Sbjct: 473 LPADAL--GPLQRTFWLDVSHNRLQALPEAVLAPLGQLR--YLSLRNNSLRTFVPQP 525
>ref|XP_001924493.1| PREDICTED: leucine-rich repeat transmembrane neuronal protein 3
[Sus scrofa].
Length = 581
Score = 68.6 bits (166), Expect = 6e-12
Identities = 70/231 (30%), Positives = 100/231 (43%), Gaps = 5/231 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L LSSNR+ + T L LDLS+N L SL F LR L SL L N L
Sbjct: 114 LILSSNRISYFLNNTFRP--VTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRT 171
Query: 447 LPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL 623
+P + F L ++L +NR+R L+ + FA + + LH++ + LA P SL
Sbjct: 172 IPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPRLVSL 231
Query: 624 PAPTIQSLNLAWNRLRAVPDLRD---LPLRYLSLDGNPLAAI-GPGAFAGLAGLTXXXXX 791
Q+L L WN++ + L+ L L GN + A GP
Sbjct: 232 -----QNLYLQWNKISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSV------------- 273
Query: 792 XXXXXXXXXXXXFRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSG 944
F+ + LQ L+L N KLT+ G E+ SL ++ L+G
Sbjct: 274 ------------FQCVPNLQRLNLDSN-KLTFIGQEILDSWISLNDISLAG 311
Score = 65.9 bits (159), Expect = 4e-11
Identities = 76/310 (24%), Positives = 123/310 (39%), Gaps = 5/310 (1%)
Frame = +3
Query: 120 AQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETV 299
+ A R C GC+CE + V C +P I L L N L+ +
Sbjct: 28 SSAERGCPKGCRCEGK-----------MVYCESQKLQEIPSSISAGCLGLSLRYNSLQKL 76
Query: 300 NESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SP 476
+ G L L L HN ++++ AF+ +R L+ L LS N ++ +F +
Sbjct: 77 KYNQF--KGLNQLTWLYLDHNHISNIDENAFNGIRRLKELILSSNRISYFLNNTFRPVTN 134
Query: 477 LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLA 656
L +++LS+N+L L F + +LH L N L+ + P R ++ L+L
Sbjct: 135 LRNLDLSYNQLHSLGSEQFRGLRKLLSLH--LRSNSLRTI---PVRIFQDCRNLELLDLG 189
Query: 657 WNRLRAVPD---LRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXX 827
+NR+R++ + L+ L L+ N + + F L L
Sbjct: 190 YNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPRLVSLQNLYLQWNKISVIGQTMS 249
Query: 828 FRELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSIS 1007
+ LQ LDLSGN ++G VF + +LQ L+L IS
Sbjct: 250 W-TWSSLQRLDLSGNEIEAFSGPSVFQCVPNLQRLNLDSNKLTFIGQEILDSWISLNDIS 308
Query: 1008 VGQGVW-CRR 1034
+ +W C R
Sbjct: 309 LAGNIWECSR 318
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,915,604
Number of extensions: 822194
Number of successful extensions: 5757
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 5441
Number of HSP's successfully gapped: 100
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008513
(1135 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001162013.1| tsukushin precursor [Mus musculus]. 497 e-143
Alignment gi|NP_001162012.1| tsukushin precursor [Mus musculus]. 497 e-143
Alignment gi|NP_001162011.1| tsukushin precursor [Mus musculus]. 497 e-143
Alignment gi|NP_001019790.1| tsukushin precursor [Mus musculus]. 497 e-143
Alignment gi|NP_001157792.1| chondroadherin-like [Mus musculus]. 87 2e-17
Alignment gi|NP_082180.2| carboxypeptidase N subunit 2 [Mus musculus]. 75 7e-14
Alignment gi|NP_034456.2| platelet glycoprotein Ib alpha chain precursor ... 75 1e-13
Alignment gi|NP_647468.2| vasorin precursor [Mus musculus]. 75 1e-13
Alignment gi|NP_084072.1| leucine-rich alpha-2-glycoprotein [Mus musculus]. 74 2e-13
Alignment gi|NP_001165952.1| asporin preproprotein [Mus musculus]. 74 3e-13
>ref|NP_001162013.1| tsukushin precursor [Mus musculus].
Length = 354
Score = 497 bits (1279), Expect(2) = e-143
Identities = 252/322 (78%), Positives = 266/322 (82%)
Frame = +3
Query: 117 RAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLET 296
R Q TRPCFPGCQCE ETFGLFDSFSL RVDCS LGPHIVPVPIPLDTAHLDLSSNRLET
Sbjct: 14 RVQTTRPCFPGCQCEEETFGLFDSFSLIRVDCSSLGPHIVPVPIPLDTAHLDLSSNRLET 73
Query: 297 VNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP 476
VNESVLAGPGYTTLAGLDLS+NLLTS+ P+AFSRLRYLESLDLSHNGLAALPA+ FTSSP
Sbjct: 74 VNESVLAGPGYTTLAGLDLSYNLLTSIMPSAFSRLRYLESLDLSHNGLAALPAEIFTSSP 133
Query: 477 LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLA 656
LSD+NLSHNRLRE+S+SAF THSQGRALHVDLSHNL+ RL PHPARASLPAPTIQSLNL+
Sbjct: 134 LSDINLSHNRLREVSISAFTTHSQGRALHVDLSHNLIHRLLPHPARASLPAPTIQSLNLS 193
Query: 657 WNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRE 836
WNR RAVPDLRDLPLRYLSLDGNPLA I P AF GLAGLT FRE
Sbjct: 194 WNRFRAVPDLRDLPLRYLSLDGNPLATINPDAFMGLAGLTHLSLASLQGILHLPPHGFRE 253
Query: 837 LRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVGQ 1016
L GLQVLDLSGNPKL WAGAEVFSGL LQELDLSG++ QS+SVGQ
Sbjct: 254 LPGLQVLDLSGNPKLKWAGAEVFSGLGLLQELDLSGSSLVPLPEMLLHHLPALQSVSVGQ 313
Query: 1017 GVWCRRLVR*GTYPRQPGSTPR 1082
V CRRLVR G Y RQPGS+P+
Sbjct: 314 DVQCRRLVREGAYHRQPGSSPK 335
Score = 32.3 bits (72), Expect(2) = e-143
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 1076 PKVALHCIDTGEAAPGGPDI 1135
PKV LHC DT E+A GPDI
Sbjct: 334 PKVVLHCGDTQESAARGPDI 353
>ref|NP_001162012.1| tsukushin precursor [Mus musculus].
Length = 354
Score = 497 bits (1279), Expect(2) = e-143
Identities = 252/322 (78%), Positives = 266/322 (82%)
Frame = +3
Query: 117 RAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLET 296
R Q TRPCFPGCQCE ETFGLFDSFSL RVDCS LGPHIVPVPIPLDTAHLDLSSNRLET
Sbjct: 14 RVQTTRPCFPGCQCEEETFGLFDSFSLIRVDCSSLGPHIVPVPIPLDTAHLDLSSNRLET 73
Query: 297 VNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP 476
VNESVLAGPGYTTLAGLDLS+NLLTS+ P+AFSRLRYLESLDLSHNGLAALPA+ FTSSP
Sbjct: 74 VNESVLAGPGYTTLAGLDLSYNLLTSIMPSAFSRLRYLESLDLSHNGLAALPAEIFTSSP 133
Query: 477 LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLA 656
LSD+NLSHNRLRE+S+SAF THSQGRALHVDLSHNL+ RL PHPARASLPAPTIQSLNL+
Sbjct: 134 LSDINLSHNRLREVSISAFTTHSQGRALHVDLSHNLIHRLLPHPARASLPAPTIQSLNLS 193
Query: 657 WNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRE 836
WNR RAVPDLRDLPLRYLSLDGNPLA I P AF GLAGLT FRE
Sbjct: 194 WNRFRAVPDLRDLPLRYLSLDGNPLATINPDAFMGLAGLTHLSLASLQGILHLPPHGFRE 253
Query: 837 LRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVGQ 1016
L GLQVLDLSGNPKL WAGAEVFSGL LQELDLSG++ QS+SVGQ
Sbjct: 254 LPGLQVLDLSGNPKLKWAGAEVFSGLGLLQELDLSGSSLVPLPEMLLHHLPALQSVSVGQ 313
Query: 1017 GVWCRRLVR*GTYPRQPGSTPR 1082
V CRRLVR G Y RQPGS+P+
Sbjct: 314 DVQCRRLVREGAYHRQPGSSPK 335
Score = 32.3 bits (72), Expect(2) = e-143
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 1076 PKVALHCIDTGEAAPGGPDI 1135
PKV LHC DT E+A GPDI
Sbjct: 334 PKVVLHCGDTQESAARGPDI 353
>ref|NP_001162011.1| tsukushin precursor [Mus musculus].
Length = 354
Score = 497 bits (1279), Expect(2) = e-143
Identities = 252/322 (78%), Positives = 266/322 (82%)
Frame = +3
Query: 117 RAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLET 296
R Q TRPCFPGCQCE ETFGLFDSFSL RVDCS LGPHIVPVPIPLDTAHLDLSSNRLET
Sbjct: 14 RVQTTRPCFPGCQCEEETFGLFDSFSLIRVDCSSLGPHIVPVPIPLDTAHLDLSSNRLET 73
Query: 297 VNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP 476
VNESVLAGPGYTTLAGLDLS+NLLTS+ P+AFSRLRYLESLDLSHNGLAALPA+ FTSSP
Sbjct: 74 VNESVLAGPGYTTLAGLDLSYNLLTSIMPSAFSRLRYLESLDLSHNGLAALPAEIFTSSP 133
Query: 477 LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLA 656
LSD+NLSHNRLRE+S+SAF THSQGRALHVDLSHNL+ RL PHPARASLPAPTIQSLNL+
Sbjct: 134 LSDINLSHNRLREVSISAFTTHSQGRALHVDLSHNLIHRLLPHPARASLPAPTIQSLNLS 193
Query: 657 WNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRE 836
WNR RAVPDLRDLPLRYLSLDGNPLA I P AF GLAGLT FRE
Sbjct: 194 WNRFRAVPDLRDLPLRYLSLDGNPLATINPDAFMGLAGLTHLSLASLQGILHLPPHGFRE 253
Query: 837 LRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVGQ 1016
L GLQVLDLSGNPKL WAGAEVFSGL LQELDLSG++ QS+SVGQ
Sbjct: 254 LPGLQVLDLSGNPKLKWAGAEVFSGLGLLQELDLSGSSLVPLPEMLLHHLPALQSVSVGQ 313
Query: 1017 GVWCRRLVR*GTYPRQPGSTPR 1082
V CRRLVR G Y RQPGS+P+
Sbjct: 314 DVQCRRLVREGAYHRQPGSSPK 335
Score = 32.3 bits (72), Expect(2) = e-143
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 1076 PKVALHCIDTGEAAPGGPDI 1135
PKV LHC DT E+A GPDI
Sbjct: 334 PKVVLHCGDTQESAARGPDI 353
>ref|NP_001019790.1| tsukushin precursor [Mus musculus].
Length = 354
Score = 497 bits (1279), Expect(2) = e-143
Identities = 252/322 (78%), Positives = 266/322 (82%)
Frame = +3
Query: 117 RAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLET 296
R Q TRPCFPGCQCE ETFGLFDSFSL RVDCS LGPHIVPVPIPLDTAHLDLSSNRLET
Sbjct: 14 RVQTTRPCFPGCQCEEETFGLFDSFSLIRVDCSSLGPHIVPVPIPLDTAHLDLSSNRLET 73
Query: 297 VNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP 476
VNESVLAGPGYTTLAGLDLS+NLLTS+ P+AFSRLRYLESLDLSHNGLAALPA+ FTSSP
Sbjct: 74 VNESVLAGPGYTTLAGLDLSYNLLTSIMPSAFSRLRYLESLDLSHNGLAALPAEIFTSSP 133
Query: 477 LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLA 656
LSD+NLSHNRLRE+S+SAF THSQGRALHVDLSHNL+ RL PHPARASLPAPTIQSLNL+
Sbjct: 134 LSDINLSHNRLREVSISAFTTHSQGRALHVDLSHNLIHRLLPHPARASLPAPTIQSLNLS 193
Query: 657 WNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRE 836
WNR RAVPDLRDLPLRYLSLDGNPLA I P AF GLAGLT FRE
Sbjct: 194 WNRFRAVPDLRDLPLRYLSLDGNPLATINPDAFMGLAGLTHLSLASLQGILHLPPHGFRE 253
Query: 837 LRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVGQ 1016
L GLQVLDLSGNPKL WAGAEVFSGL LQELDLSG++ QS+SVGQ
Sbjct: 254 LPGLQVLDLSGNPKLKWAGAEVFSGLGLLQELDLSGSSLVPLPEMLLHHLPALQSVSVGQ 313
Query: 1017 GVWCRRLVR*GTYPRQPGSTPR 1082
V CRRLVR G Y RQPGS+P+
Sbjct: 314 DVQCRRLVREGAYHRQPGSSPK 335
Score = 32.3 bits (72), Expect(2) = e-143
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 1076 PKVALHCIDTGEAAPGGPDI 1135
PKV LHC DT E+A GPDI
Sbjct: 334 PKVVLHCGDTQESAARGPDI 353
>ref|NP_001157792.1| chondroadherin-like [Mus musculus].
Length = 748
Score = 87.0 bits (214), Expect = 2e-17
Identities = 96/296 (32%), Positives = 122/296 (41%), Gaps = 26/296 (8%)
Frame = +3
Query: 135 PCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVL 314
PC P C C ET C G G VP P DT LDL N +V +
Sbjct: 394 PCPPACACVAET---------RHSTCDGRGLQAVPRGFPNDTQLLDLRRNHFPSVPRA-- 442
Query: 315 AGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP-LSDVN 491
A PG L L L H + L P A + L L L LSHN L+ L A + +P L +
Sbjct: 443 AFPGLRHLVSLHLQHCGVAELEPGALAGLDRLLYLYLSHNQLSGLSAAALEGAPNLGYLY 502
Query: 492 LSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAP-----------------HPARAS 620
L HNR L + A + + + L N + RLAP H + S
Sbjct: 503 LEHNRF--LRIPGTALRALPTLVSLHLQDNAVDRLAPGDLAGARALRCLYLSGNHITQVS 560
Query: 621 L----PAPTIQSLNLAWNRLRAVPD--LRDLP-LRYLSLDGNPLAAIGPGAFAGLAGLTX 779
PA ++ L+L NRLR VP L LP L+ L L GNPL A+ GAF +
Sbjct: 561 PGALGPARELEKLHLDRNRLREVPTGALEGLPALKELQLSGNPLRALPDGAFQPVGRSLQ 620
Query: 780 XXXXXXXXXXXXXXXXFREL-RGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSG 944
F L +GL+ L L N +L A + GL L+ +DLSG
Sbjct: 621 QLFLNSSDLEQISPRAFSGLGKGLRSLYLHKN-QLQSLPAPL--GLSGLELVDLSG 673
Score = 75.1 bits (183), Expect = 9e-14
Identities = 65/168 (38%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L+L+SNRL T+ + L G G +L L+L N+L L P F L L +L+L+HN L
Sbjct: 114 LNLASNRLSTLPQEALDGLG--SLRRLELEGNMLEELRPGTFGALGSLTTLNLAHNALVY 171
Query: 447 LPAQSFTSSPLSD-VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL 623
LPA +F + + LSHN L L+ A A R L L HN LQ L P A
Sbjct: 172 LPAMAFQGLLRTRWLQLSHNALSVLAPEALAGLPALRRL--SLHHNELQAL---PGAALS 226
Query: 624 PAPTIQSLNLAWNRLRAVPDLRDLP---LRYLSLDGNPLAAIGPGAFA 758
A ++ L L N L + L LR L+LD L A+GP AFA
Sbjct: 227 QARSLARLELGHNPLTYTGEEDGLALPGLRELALDHGSLQALGPRAFA 274
Score = 57.8 bits (138), Expect = 2e-08
Identities = 63/202 (31%), Positives = 87/202 (43%), Gaps = 4/202 (1%)
Frame = +3
Query: 345 LDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNLSHNRLRELS 521
LDL N+L L AF L +L LDL + + + +F L +NL+ NRL L
Sbjct: 66 LDLQGNILKVLPAAAFQDLPHLTHLDLRNCQVEMVAEGAFRGLGRLLLLNLASNRLSTLP 125
Query: 522 VSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRD--- 692
A G ++L N+L+ L P A ++ +LNLA N L +P +
Sbjct: 126 QEAL--DGLGSLRRLELEGNMLEELRPGTFGA---LGSLTTLNLAHNALVYLPAMAFQGL 180
Query: 693 LPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGN 872
L R+L L N L+ + P A AGL L + R L L+L N
Sbjct: 181 LRTRWLQLSHNALSVLAPEALAGLPAL-RRLSLHHNELQALPGAALSQARSLARLELGHN 239
Query: 873 PKLTWAGAEVFSGLDSLQELDL 938
P LT+ G E L L+EL L
Sbjct: 240 P-LTYTGEEDGLALPGLRELAL 260
>ref|NP_082180.2| carboxypeptidase N subunit 2 [Mus musculus].
Length = 547
Score = 75.5 bits (184), Expect = 7e-14
Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L LS+N L + E L ++L L L N +T LSP FS+L LE L L HN +
Sbjct: 198 LKLSNNMLARLPEGALGS--LSSLQELFLDGNAITELSPHLFSQLFSLEMLWLQHNAICH 255
Query: 447 LPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASL 623
LP F+S L+ ++L N LR L FA H+QG LH+ LS+N L+ + P A
Sbjct: 256 LPVSLFSSLHNLTFLSLKDNALRTLPEGLFA-HNQG-LLHLSLSYNQLETI---PEGAFT 310
Query: 624 PAPTIQSLNLAWNRLRAVPD--LRDL-PLRYLSLDGNPLAAIGPGAFAGLAGL 773
+ SL L+ N + +P+ R+L L LSLD N L A+ P F L+ L
Sbjct: 311 NLSRLVSLTLSHNAITDLPEHVFRNLEQLVKLSLDSNNLTALHPALFHNLSRL 363
Score = 55.8 bits (133), Expect = 6e-08
Identities = 71/244 (29%), Positives = 98/244 (40%), Gaps = 26/244 (10%)
Frame = +3
Query: 120 AQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETV 299
A+ T+PC GC C FG V CS +P IP + TV
Sbjct: 16 ARLTQPCPVGCDC----FG-------REVFCSDEQLADIPPDIPPHITDIVFVETAFTTV 64
Query: 300 NESVLAGP----------------------GYTTLAGLDLSHNLLTSLSPTAFSRLRYLE 413
+G G L L+++ + +++LS FS L LE
Sbjct: 65 RTRAFSGSPNLTKVVFLNTQVRHLEPDAFGGLPRLQDLEITGSPVSNLSAHIFSNLSSLE 124
Query: 414 SLDLSHNGLAALPAQSFTSSP-LSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQ 590
L L + LA LP F L + L N+LR L F + R L +L+ NLL
Sbjct: 125 KLTLDFDRLAGLPEDLFCHMDILESLQLQGNQLRTLPGRLFQSLRDLRTL--NLAQNLLT 182
Query: 591 RLAPHPARASLPAPTIQSLNLAWNRLRAVPD--LRDL-PLRYLSLDGNPLAAIGPGAFAG 761
+L P A SL +Q L L+ N L +P+ L L L+ L LDGN + + P F+
Sbjct: 183 QL-PKGAFQSLTG--LQMLKLSNNMLARLPEGALGSLSSLQELFLDGNAITELSPHLFSQ 239
Query: 762 LAGL 773
L L
Sbjct: 240 LFSL 243
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/94 (41%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 264 HLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLA 443
HL LS N+LET+ E A + L L LSHN +T L F L L L L N L
Sbjct: 293 HLSLSYNQLETIPEG--AFTNLSRLVSLTLSHNAITDLPEHVFRNLEQLVKLSLDSNNLT 350
Query: 444 AL-PAQSFTSSPLSDVNLSHNRLRELSVSAFATH 542
AL PA S L +NLS N+L L F T+
Sbjct: 351 ALHPALFHNLSRLQLLNLSRNQLTTLPGGIFDTN 384
>ref|NP_034456.2| platelet glycoprotein Ib alpha chain precursor [Mus musculus].
Length = 734
Score = 74.7 bits (182), Expect = 1e-13
Identities = 69/196 (35%), Positives = 94/196 (47%), Gaps = 5/196 (2%)
Frame = +3
Query: 192 SLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLT 371
SL V+C +P +P DT L L N+L T + + L +T L L L LT
Sbjct: 27 SLLEVNCENKKLTALPADLPADTGILHLGENQLGTFSTASLVH--FTHLTYLYLDRCELT 84
Query: 372 SLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQG 551
SL +L LE+LDLSHN L +LP+ + L+ +++S N+L LS SQ
Sbjct: 85 SLQTNG--KLIKLENLDLSHNNLKSLPSLGWALPALTTLDVSFNKLGSLSPGVLDGLSQL 142
Query: 552 RALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPD-----LRDLPLRYLSL 716
+ L+ L +N L+ L P LP ++ LNLA N+LR +P L DL Y L
Sbjct: 143 QELY--LQNNDLKSL---PPGLLLPTTKLKKLNLANNKLRELPSGLLDGLEDLDTLY--L 195
Query: 717 DGNPLAAIGPGAFAGL 764
N L I G F L
Sbjct: 196 QRNWLRTIPKGFFGTL 211
>ref|NP_647468.2| vasorin precursor [Mus musculus].
Length = 673
Score = 74.7 bits (182), Expect = 1e-13
Identities = 83/272 (30%), Positives = 115/272 (42%), Gaps = 4/272 (1%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V C+ VP +P DT L + N + T++ A
Sbjct: 25 CPSGCQCNQPQ----------TVFCTARQGTTVPRDVPPDTVGLYIFENGITTLDVGCFA 74
Query: 318 G-PGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVN 491
G PG L LDLS N +TSL F L L +LDL+ N L + ++F L +
Sbjct: 75 GLPG---LQLLDLSQNQITSLPGGIFQPLVNLSNLDLTANKLHEISNETFRGLRRLERLY 131
Query: 492 LSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLR 671
L NR+R + AF + R L + L N L+ L P L P + L+L+ N +
Sbjct: 132 LGKNRIRHIQPGAF--DALDRLLELKLPDNELRVLPP------LHLPRLLLLDLSHNSIP 183
Query: 672 AVPD--LRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRG 845
A+ L + L L G L + G F L L + LRG
Sbjct: 184 ALEAGILDTANVEALRLAGLGLRQLDEGLFGRLLNL--HDLDVSDNQLEHMPSVIQGLRG 241
Query: 846 LQVLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
L L L+GN ++ E +GL +LQELD+S
Sbjct: 242 LTRLRLAGNTRIAQIRPEDLAGLTALQELDVS 273
>ref|NP_084072.1| leucine-rich alpha-2-glycoprotein [Mus musculus].
Length = 342
Score = 73.9 bits (180), Expect = 2e-13
Identities = 73/211 (34%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Frame = +3
Query: 222 GPHIVPVPIPLDTAHLDLSSNRLETVNESVLAG-PGYTTLAGLDLSHNLLTSLSPTAFSR 398
GP P +P DT HL + + L + + L G PG L L LS N L +LSP +
Sbjct: 51 GPTEFPSSLPADTVHLSVEFSNLTQLPAAALQGCPG---LRELHLSSNRLQALSPELLAP 107
Query: 399 LRYLESLDLSHNGLAALPAQSF-TSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLS 575
+ L +LDL+ N L +LP F TS+ LS + L N+LRE VSA H+DL+
Sbjct: 108 VPRLRALDLTRNALRSLPPGLFSTSANLSTLVLRENQLRE--VSAQWLQGLDALGHLDLA 165
Query: 576 HNLLQRLAPHPARASLPA----------------------PTIQSLNLAWNRLRAVPDLR 689
N L L P ASL A +Q L+L NRL+ + D
Sbjct: 166 ENQLSSL-PSGLLASLGALHTLDLGYNLLESLPEGLLRGPRRLQRLHLEGNRLQRLEDSL 224
Query: 690 DLP---LRYLSLDGNPLAAIGPGAFAGLAGL 773
P LR L L+ N L + G+F GL L
Sbjct: 225 LAPQPFLRVLFLNDNQLVGVATGSFQGLQHL 255
>ref|NP_001165952.1| asporin preproprotein [Mus musculus].
Length = 373
Score = 73.6 bits (179), Expect = 3e-13
Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V CS LG VP IP DT +DL +N+++ + E+
Sbjct: 68 CPFGCQCYSRV-----------VHCSDLGLTSVPNNIPFDTRMVDLQNNKIKEIKENDF- 115
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLS 497
G T+L L L++N LT + P F + L L LSHN L+ +P L+++ +
Sbjct: 116 -KGLTSLYALILNNNKLTKIHPKTFLTTKKLRRLYLSHNQLSEIPLN--LPKSLAELRIH 172
Query: 498 HNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHP-------------ARASLPA-- 629
N+++++ F + ALHV ++S N L+ P A A L +
Sbjct: 173 DNKVKKIQKDTFKGMN---ALHVLEMSANPLENNGIEPGAFEGVTVFHIRIAEAKLTSIP 229
Query: 630 ----PTIQSLNLAWNRLRAVPDLRDL----PLRYLSLDGNPLAAIGPGAFAGL 764
PT+ L+L +N++ V +L DL L+ L L N + I G FA +
Sbjct: 230 KGLPPTLLELHLDFNKISTV-ELEDLKRYRELQRLGLGNNRITDIENGTFANI 281
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,861,702
Number of extensions: 999674
Number of successful extensions: 6753
Number of sequences better than 1.0e-05: 104
Number of HSP's gapped: 6344
Number of HSP's successfully gapped: 140
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008513
(1135 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056331.2| tsukushin precursor [Homo sapiens]. 515 e-146
Alignment gi|NP_001139726.1| podocan-like protein 1 isoform 2 [Homo sapie... 81 2e-15
Alignment gi|NP_079101.3| podocan-like protein 1 isoform 1 [Homo sapiens]. 81 2e-15
Alignment gi|NP_001122394.1| leucine-rich repeat-containing protein 32 pr... 80 5e-15
Alignment gi|NP_005503.1| leucine-rich repeat-containing protein 32 precu... 80 5e-15
Alignment gi|NP_612449.2| vasorin precursor [Homo sapiens]. 78 2e-14
Alignment gi|NP_060150.4| asporin isoform 1 preproprotein [Homo sapiens]. 77 3e-14
Alignment gi|NP_001139478.1| insulin-like growth factor-binding protein c... 77 3e-14
Alignment gi|NP_004961.1| insulin-like growth factor-binding protein comp... 77 3e-14
Alignment gi|NP_001139727.1| podocan-like protein 1 isoform 3 [Homo sapie... 76 7e-14
>ref|NP_056331.2| tsukushin precursor [Homo sapiens].
Length = 353
Score = 515 bits (1326), Expect = e-146
Identities = 261/323 (80%), Positives = 272/323 (84%)
Frame = +3
Query: 114 SRAQATRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLE 293
S AQ TRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHI+PVPIPLDTAHLDLSSNRLE
Sbjct: 12 SGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDTAHLDLSSNRLE 71
Query: 294 TVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSS 473
VNESVLAGPGYTTLAGLDLSHNLLTS+SPTAFSRLRYLESLDLSHNGL ALPA+SFTSS
Sbjct: 72 MVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGLTALPAESFTSS 131
Query: 474 PLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNL 653
PLSDVNLSHN+LRE+SVSAF THSQGRALHVDLSHNL+ RL PHP RA LPAPTIQSLNL
Sbjct: 132 PLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHNLIHRLVPHPTRAGLPAPTIQSLNL 191
Query: 654 AWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFR 833
AWNRL AVP+LRDLPLRYLSLDGNPLA IGPGAFAGL GLT FR
Sbjct: 192 AWNRLHAVPNLRDLPLRYLSLDGNPLAVIGPGAFAGLGGLTHLSLASLQRLPELAPSGFR 251
Query: 834 ELRGLQVLDLSGNPKLTWAGAEVFSGLDSLQELDLSGTAXXXXXXXXXXXXXXXQSISVG 1013
EL GLQVLDLSGNPKL WAGAEVFSGL SLQELDLSGT QS+SVG
Sbjct: 252 ELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQELDLSGTNLVPLPEALLLHLPALQSVSVG 311
Query: 1014 QGVWCRRLVR*GTYPRQPGSTPR 1082
Q V CRRLVR GTYPR+PGS+P+
Sbjct: 312 QDVRCRRLVREGTYPRRPGSSPK 334
>ref|NP_001139726.1| podocan-like protein 1 isoform 2 [Homo sapiens].
Length = 510
Score = 80.9 bits (198), Expect = 2e-15
Identities = 83/259 (32%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
+P +P L L +N + V L+ T L L L HN LT L T FS+L
Sbjct: 208 LPPSLPPSLERLHLQNNLISKVPRGALSRQ--TQLRELYLQHNQLTDSGLDATTFSKLHS 265
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
LE LDLSHN L +PA L+ ++L NR+R+ V A H ++ L HN L
Sbjct: 266 LEYLDLSHNQLTTVPAG--LPRTLAILHLGRNRIRQ--VEAARLHGARGLRYLLLQHNQL 321
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
+ PA A P + +L+L N L VP LR L L N +AA+G
Sbjct: 322 GS-SGLPAGALRPLRGLHTLHLYGNGLDRVPPALPRRLRALVLPHNHVAALGARDLVATP 380
Query: 768 GLT-XXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNP--------------------KLT 884
GLT FR LR L+ LDL+GN +L
Sbjct: 381 GLTELNLAYNRLASARVHHRAFRRLRALRSLDLAGNQLTRLPMGLPTGLRTLQLQRNQLR 440
Query: 885 WAGAEVFSGLDSLQELDLS 941
E +GLD L+EL L+
Sbjct: 441 MLEPEPLAGLDQLRELSLA 459
Score = 59.3 bits (142), Expect = 6e-09
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Frame = +3
Query: 204 VDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--L 377
VDC GL + P I HL L +N+L+ + + L+ + L L+L +NL++S L
Sbjct: 56 VDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNELS--RLSGLRTLNLHNNLISSEGL 113
Query: 378 SPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRA 557
AF L L+ L ++HN L+ P F L +L+ N++ E+ F R+
Sbjct: 114 PDEAFESLTQLQHLCVAHNKLSVAP--QFLPRSLRVADLAANQVMEIFPLTFGEKPALRS 171
Query: 558 LHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAA 737
+++ HN A P A + I +L+L+ N+L +P L L L N ++
Sbjct: 172 VYL---HNNQLSNAGLPPDAFRGSEAIATLSLSNNQLSYLPPSLPPSLERLHLQNNLISK 228
Query: 738 IGPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKLT 884
+ GA + L F +L L+ LDLS N T
Sbjct: 229 VPRGALSRQTQLRELYLQHNQLTDSGLDATTFSKLHSLEYLDLSHNQLTT 278
>ref|NP_079101.3| podocan-like protein 1 isoform 1 [Homo sapiens].
Length = 512
Score = 80.9 bits (198), Expect = 2e-15
Identities = 83/259 (32%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Frame = +3
Query: 234 VPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--LSPTAFSRLRY 407
+P +P L L +N + V L+ T L L L HN LT L T FS+L
Sbjct: 210 LPPSLPPSLERLHLQNNLISKVPRGALSRQ--TQLRELYLQHNQLTDSGLDATTFSKLHS 267
Query: 408 LESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL 587
LE LDLSHN L +PA L+ ++L NR+R+ V A H ++ L HN L
Sbjct: 268 LEYLDLSHNQLTTVPAG--LPRTLAILHLGRNRIRQ--VEAARLHGARGLRYLLLQHNQL 323
Query: 588 QRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGLA 767
+ PA A P + +L+L N L VP LR L L N +AA+G
Sbjct: 324 GS-SGLPAGALRPLRGLHTLHLYGNGLDRVPPALPRRLRALVLPHNHVAALGARDLVATP 382
Query: 768 GLT-XXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNP--------------------KLT 884
GLT FR LR L+ LDL+GN +L
Sbjct: 383 GLTELNLAYNRLASARVHHRAFRRLRALRSLDLAGNQLTRLPMGLPTGLRTLQLQRNQLR 442
Query: 885 WAGAEVFSGLDSLQELDLS 941
E +GLD L+EL L+
Sbjct: 443 MLEPEPLAGLDQLRELSLA 461
Score = 59.3 bits (142), Expect = 6e-09
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Frame = +3
Query: 204 VDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTS--L 377
VDC GL + P I HL L +N+L+ + + L+ + L L+L +NL++S L
Sbjct: 58 VDCDGLDLRVFPDNITRAAQHLSLQNNQLQELPYNELS--RLSGLRTLNLHNNLISSEGL 115
Query: 378 SPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRA 557
AF L L+ L ++HN L+ P F L +L+ N++ E+ F R+
Sbjct: 116 PDEAFESLTQLQHLCVAHNKLSVAP--QFLPRSLRVADLAANQVMEIFPLTFGEKPALRS 173
Query: 558 LHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPDLRDLPLRYLSLDGNPLAA 737
+++ HN A P A + I +L+L+ N+L +P L L L N ++
Sbjct: 174 VYL---HNNQLSNAGLPPDAFRGSEAIATLSLSNNQLSYLPPSLPPSLERLHLQNNLISK 230
Query: 738 IGPGAFAGLAGL-TXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGNPKLT 884
+ GA + L F +L L+ LDLS N T
Sbjct: 231 VPRGALSRQTQLRELYLQHNQLTDSGLDATTFSKLHSLEYLDLSHNQLTT 280
>ref|NP_001122394.1| leucine-rich repeat-containing protein 32 precursor [Homo sapiens].
Length = 662
Score = 79.7 bits (195), Expect = 5e-15
Identities = 83/230 (36%), Positives = 104/230 (45%), Gaps = 6/230 (2%)
Frame = +3
Query: 201 RVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGP--GYTTLAGLDLSHNLLTS 374
+V C LG VP +P DT LDLS N+L S+LA P YT L LDLS N ++
Sbjct: 32 KVSCQVLGLLQVPSVLPPDTETLDLSGNQLR----SILASPLGFYTALRHLDLSTNEISF 87
Query: 375 LSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQG 551
L P AF L +LE L L+HN LA A S PL R+ L +S + +S
Sbjct: 88 LQPGAFQALTHLEHLSLAHNRLAMATALSAGGLGPLP-------RVTSLDLSGNSLYS-- 138
Query: 552 RALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP--DLRDLP-LRYLSLDG 722
LL+RL AP++ +L+LA N L + RD+P L L L
Sbjct: 139 ---------GLLERLLGE-------APSLHTLSLAENSLTRLTRHTFRDMPALEQLDLHS 182
Query: 723 NPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGN 872
N L I GAF GL LT L+ L+VLDLS N
Sbjct: 183 NVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDF----SLQQLRVLDLSCN 228
Score = 51.2 bits (121), Expect = 2e-06
Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Frame = +3
Query: 264 HLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLA 443
+LDLS N +E + +S L T+L L+LS N L + L L LDLSHN L
Sbjct: 319 NLDLSYNEIELIPDSFLEH--LTSLCFLNLSRNCLRTFEARRLGSLPCLMLLDLSHNALE 376
Query: 444 ALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL------QRLAPH 605
L + L + L N LR+L FA + + L +L N + P
Sbjct: 377 TLELGARALGSLRTLLLQGNALRDLPPYTFANLASLQRL--NLQGNRVSPCGGPDEPGPS 434
Query: 606 PARASLPAPTIQSLNLAWNR---LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGL 764
A +++SL+L N LRA L PL L L NP + GA GL
Sbjct: 435 GCVAFSGITSLRSLSLVDNEIELLRAGAFLH-TPLTELDLSSNPGLEVATGALGGL 489
>ref|NP_005503.1| leucine-rich repeat-containing protein 32 precursor [Homo sapiens].
Length = 662
Score = 79.7 bits (195), Expect = 5e-15
Identities = 83/230 (36%), Positives = 104/230 (45%), Gaps = 6/230 (2%)
Frame = +3
Query: 201 RVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLAGP--GYTTLAGLDLSHNLLTS 374
+V C LG VP +P DT LDLS N+L S+LA P YT L LDLS N ++
Sbjct: 32 KVSCQVLGLLQVPSVLPPDTETLDLSGNQLR----SILASPLGFYTALRHLDLSTNEISF 87
Query: 375 LSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQG 551
L P AF L +LE L L+HN LA A S PL R+ L +S + +S
Sbjct: 88 LQPGAFQALTHLEHLSLAHNRLAMATALSAGGLGPLP-------RVTSLDLSGNSLYS-- 138
Query: 552 RALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP--DLRDLP-LRYLSLDG 722
LL+RL AP++ +L+LA N L + RD+P L L L
Sbjct: 139 ---------GLLERLLGE-------APSLHTLSLAENSLTRLTRHTFRDMPALEQLDLHS 182
Query: 723 NPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQVLDLSGN 872
N L I GAF GL LT L+ L+VLDLS N
Sbjct: 183 NVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDF----SLQQLRVLDLSCN 228
Score = 51.2 bits (121), Expect = 2e-06
Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Frame = +3
Query: 264 HLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLA 443
+LDLS N +E + +S L T+L L+LS N L + L L LDLSHN L
Sbjct: 319 NLDLSYNEIELIPDSFLEH--LTSLCFLNLSRNCLRTFEARRLGSLPCLMLLDLSHNALE 376
Query: 444 ALPAQSFTSSPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLL------QRLAPH 605
L + L + L N LR+L FA + + L +L N + P
Sbjct: 377 TLELGARALGSLRTLLLQGNALRDLPPYTFANLASLQRL--NLQGNRVSPCGGPDEPGPS 434
Query: 606 PARASLPAPTIQSLNLAWNR---LRAVPDLRDLPLRYLSLDGNPLAAIGPGAFAGL 764
A +++SL+L N LRA L PL L L NP + GA GL
Sbjct: 435 GCVAFSGITSLRSLSLVDNEIELLRAGAFLH-TPLTELDLSSNPGLEVATGALGGL 489
>ref|NP_612449.2| vasorin precursor [Homo sapiens].
Length = 673
Score = 77.8 bits (190), Expect = 2e-14
Identities = 85/272 (31%), Positives = 116/272 (42%), Gaps = 4/272 (1%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V C+ VP +P DT L + N + ++ A
Sbjct: 24 CPSGCQCSQPQ----------TVFCTARQGTTVPRDVPPDTVGLYVFENGITMLDAGSFA 73
Query: 318 G-PGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTS-SPLSDVN 491
G PG L LDLS N + SL F L L +LDL+ N L + ++F L +
Sbjct: 74 GLPG---LQLLDLSQNQIASLPSGVFQPLANLSNLDLTANRLHEITNETFRGLRRLERLY 130
Query: 492 LSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLR 671
L NR+R + AF T R L + L N L+ L P L P + L+L+ N L
Sbjct: 131 LGKNRIRHIQPGAFDTLD--RLLELKLQDNELRALPP------LRLPRLLLLDLSHNSLL 182
Query: 672 AV-PDLRDLP-LRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRG 845
A+ P + D + L L G L + G F+ L L R LRG
Sbjct: 183 ALEPGILDTANVEALRLAGLGLQQLDEGLFSRLRNL--HDLDVSDNQLERVPPVIRGLRG 240
Query: 846 LQVLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
L L L+GN ++ E +GL +LQELD+S
Sbjct: 241 LTRLRLAGNTRIAQLRPEDLAGLAALQELDVS 272
>ref|NP_060150.4| asporin isoform 1 preproprotein [Homo sapiens].
Length = 379
Score = 77.0 bits (188), Expect = 3e-14
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 1/202 (0%)
Frame = +3
Query: 138 CFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIVPVPIPLDTAHLDLSSNRLETVNESVLA 317
C GCQC V CS LG VP IP DT LDL +N+++ + E+
Sbjct: 74 CPFGCQCYSRV-----------VHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDF- 121
Query: 318 GPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLS 497
G T+L GL L++N LT + P AF + L L LSHN L+ +P L+++ +
Sbjct: 122 -KGLTSLYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLN--LPKSLAELRIH 178
Query: 498 HNRLRELSVSAFATHSQGRALHV-DLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRA 674
N+++++ F + ALHV ++S N L P + T+ + +A +L +
Sbjct: 179 ENKVKKIQKDTFKGMN---ALHVLEMSANPLDNNGIEP--GAFEGVTVFHIRIAEAKLTS 233
Query: 675 VPDLRDLPLRYLSLDGNPLAAI 740
VP L L LD N ++ +
Sbjct: 234 VPKGLPPTLLELHLDYNKISTV 255
>ref|NP_001139478.1| insulin-like growth factor-binding protein complex acid labile
subunit isoform 1 precursor [Homo sapiens].
Length = 643
Score = 77.0 bits (188), Expect = 3e-14
Identities = 73/210 (34%), Positives = 99/210 (47%), Gaps = 4/210 (1%)
Frame = +3
Query: 324 GYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP-LSDVNLSH 500
G L LDLSHN + L F L L L LSHN +A+L ++F L ++ L H
Sbjct: 302 GLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGH 361
Query: 501 NRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP 680
NR+R+L+ +F Q L +D HN LQ + A A L + +NL+ N LR +P
Sbjct: 362 NRIRQLAERSFEGLGQLEVLTLD--HNQLQEV---KAGAFLGLTNVAVMNLSGNCLRNLP 416
Query: 681 D--LRDL-PLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQ 851
+ R L L L L+G+ L I P F GL+GL + L L
Sbjct: 417 EQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLW-GLAELL 475
Query: 852 VLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
LDL+ N +LT +F GL L+ L LS
Sbjct: 476 ELDLTSN-QLTHLPHRLFQGLGKLEYLLLS 504
Score = 58.5 bits (140), Expect = 1e-08
Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 4/168 (2%)
Frame = +3
Query: 255 DTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHN 434
+ A ++LS N L + E V G G L L L + L + P F+ L L L L N
Sbjct: 401 NVAVMNLSGNCLRNLPEQVFRGLG--KLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDN 458
Query: 435 GLAALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPA 611
GL + QS + L +++L+ N+L L F G+ ++ LS N RLA PA
Sbjct: 459 GLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLF--QGLGKLEYLLLSRN---RLAELPA 513
Query: 612 RASLPAPTIQSLNLAWNRLRAVPDLRDLP---LRYLSLDGNPLAAIGP 746
A P L+++ NRL A+P+ P LRYLSL N L P
Sbjct: 514 DALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP 561
Score = 50.1 bits (118), Expect = 4e-06
Identities = 45/117 (38%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L N L + E L G L LDL+ N LT L F L LE L LS N LA
Sbjct: 453 LFLKDNGLVGIEEQSLWG--LAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAE 510
Query: 447 LPAQSFTSSPLSD---VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHP 608
LPA + PL +++SHNRL L S A GR ++ L +N L+ P P
Sbjct: 511 LPADAL--GPLQRAFWLDVSHNRLEALPNSLLA--PLGRLRYLSLRNNSLRTFTPQP 563
>ref|NP_004961.1| insulin-like growth factor-binding protein complex acid labile
subunit isoform 2 precursor [Homo sapiens].
Length = 605
Score = 77.0 bits (188), Expect = 3e-14
Identities = 73/210 (34%), Positives = 99/210 (47%), Gaps = 4/210 (1%)
Frame = +3
Query: 324 GYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSP-LSDVNLSH 500
G L LDLSHN + L F L L L LSHN +A+L ++F L ++ L H
Sbjct: 264 GLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGH 323
Query: 501 NRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVP 680
NR+R+L+ +F Q L +D HN LQ + A A L + +NL+ N LR +P
Sbjct: 324 NRIRQLAERSFEGLGQLEVLTLD--HNQLQEV---KAGAFLGLTNVAVMNLSGNCLRNLP 378
Query: 681 D--LRDL-PLRYLSLDGNPLAAIGPGAFAGLAGLTXXXXXXXXXXXXXXXXXFRELRGLQ 851
+ R L L L L+G+ L I P F GL+GL + L L
Sbjct: 379 EQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLW-GLAELL 437
Query: 852 VLDLSGNPKLTWAGAEVFSGLDSLQELDLS 941
LDL+ N +LT +F GL L+ L LS
Sbjct: 438 ELDLTSN-QLTHLPHRLFQGLGKLEYLLLS 466
Score = 58.5 bits (140), Expect = 1e-08
Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 4/168 (2%)
Frame = +3
Query: 255 DTAHLDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHN 434
+ A ++LS N L + E V G G L L L + L + P F+ L L L L N
Sbjct: 363 NVAVMNLSGNCLRNLPEQVFRGLG--KLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDN 420
Query: 435 GLAALPAQSFTS-SPLSDVNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPA 611
GL + QS + L +++L+ N+L L F G+ ++ LS N RLA PA
Sbjct: 421 GLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLF--QGLGKLEYLLLSRN---RLAELPA 475
Query: 612 RASLPAPTIQSLNLAWNRLRAVPDLRDLP---LRYLSLDGNPLAAIGP 746
A P L+++ NRL A+P+ P LRYLSL N L P
Sbjct: 476 DALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP 523
Score = 50.1 bits (118), Expect = 4e-06
Identities = 45/117 (38%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 267 LDLSSNRLETVNESVLAGPGYTTLAGLDLSHNLLTSLSPTAFSRLRYLESLDLSHNGLAA 446
L L N L + E L G L LDL+ N LT L F L LE L LS N LA
Sbjct: 415 LFLKDNGLVGIEEQSLWG--LAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAE 472
Query: 447 LPAQSFTSSPLSD---VNLSHNRLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHP 608
LPA + PL +++SHNRL L S A GR ++ L +N L+ P P
Sbjct: 473 LPADAL--GPLQRAFWLDVSHNRLEALPNSLLA--PLGRLRYLSLRNNSLRTFTPQP 525
>ref|NP_001139727.1| podocan-like protein 1 isoform 3 [Homo sapiens].
Length = 421
Score = 75.9 bits (185), Expect = 7e-14
Identities = 76/227 (33%), Positives = 97/227 (42%), Gaps = 23/227 (10%)
Frame = +3
Query: 330 TTLAGLDLSHNLLTS--LSPTAFSRLRYLESLDLSHNGLAALPAQSFTSSPLSDVNLSHN 503
T L L L HN LT L T FS+L LE LDLSHN L +PA L+ ++L N
Sbjct: 149 TQLRELYLQHNQLTDSGLDATTFSKLHSLEYLDLSHNQLTTVPAG--LPRTLAILHLGRN 206
Query: 504 RLRELSVSAFATHSQGRALHVDLSHNLLQRLAPHPARASLPAPTIQSLNLAWNRLRAVPD 683
R+R+ V A H ++ L HN L + PA A P + +L+L N L VP
Sbjct: 207 RIRQ--VEAARLHGARGLRYLLLQHNQLGS-SGLPAGALRPLRGLHTLHLYGNGLDRVPP 263
Query: 684 LRDLPLRYLSLDGNPLAAIGPGAFAGLAGLT-XXXXXXXXXXXXXXXXXFRELRGLQVLD 860
LR L L N +AA+G GLT FR LR L+ LD
Sbjct: 264 ALPRRLRALVLPHNHVAALGARDLVATPGLTELNLAYNRLASARVHHRAFRRLRALRSLD 323
Query: 861 LSGNP--------------------KLTWAGAEVFSGLDSLQELDLS 941
L+GN +L E +GLD L+EL L+
Sbjct: 324 LAGNQLTRLPMGLPTGLRTLQLQRNQLRMLEPEPLAGLDQLRELSLA 370
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,926,039
Number of extensions: 1238774
Number of successful extensions: 8350
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 7876
Number of HSP's successfully gapped: 143
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008513
(1135 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 2089 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 2089 bits (1054), Expect = 0.0
Identities = 1076/1082 (99%), Gaps = 1/1082 (0%)
Strand = Plus / Plus
Query: 55 ttccagcccccaccatgccgtggcccctgctgccacccctgctgctcttgctggccgcca 114
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12047961 ttccagcccccaccatgccgtggcctctgctgccacccctgctgctcttgctggccgcca 12048020
Query: 115 gcagggcccaggccacgcggccctgcttcccggggtgccagtgcgaggtggagaccttcg 174
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12048021 gcagggcccaggccacgcggccctgcttcccagggtgccagtgcgaggtggagaccttcg 12048080
Query: 175 gcctctttgacagcttcagcctgacgcgggtggattgcagcggcctgggcccccacatcg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048081 gcctctttgacagcttcagcctgacgcgggtggattgcagcggcctgggcccccacatcg 12048140
Query: 235 tgcccgtgcccatccctctggacacggcccacctggacctgtcctccaaccggctggaga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048141 tgcccgtgcccatccctctggacacggcccacctggacctgtcctccaaccggctggaga 12048200
Query: 295 cggtgaacgagtcggtgctggcggggccgggctacaccacgctggccggcctggatctca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048201 cggtgaacgagtcggtgctggcggggccgggctacaccacgctggccggcctggatctca 12048260
Query: 355 gccacaacctgctcaccagcctctcgcccaccgccttctcccgcctccgctacctggagt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048261 gccacaacctgctcaccagcctctcgcccaccgccttctcccgcctccgctacctggagt 12048320
Query: 415 cgctggacctcagccacaacggcctggctgccctgccggcccagagcttcaccagctcgc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048321 cgctggacctcagccacaacggcctggctgccctgccggcccagagcttcaccagctcgc 12048380
Query: 475 ccctgagcgacgtgaacttgagccacaaccggctccgagagctctcggtgtccgccttcg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048381 ccctgagcgacgtgaacttgagccacaaccggctccgagagctctcggtgtccgccttcg 12048440
Query: 535 ccacgcacagccagggcagggcgctgcacgtggacctctcgcacaacctcctccagcgcc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048441 ccacgcacagccagggcagggcgctgcacgtggacctctcgcacaacctcctccagcgcc 12048500
Query: 595 tggcgccccaccctgcacgcgccagcctgcccgcacccaccatccagagcctgaacctgg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048501 tggcgccccaccctgcacgcgccagcctgcccgcacccaccatccagagcctgaacctgg 12048560
Query: 655 cctggaaccgcctccgtgccgtgcccgacctccgggacttgcccctgcgctacctgagcc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048561 cctggaaccgcctccgtgccgtgcccgacctccgggacttgcccctgcgctacctgagcc 12048620
Query: 715 tggacgggaacccgctggcggccatcggccccggggccttcgcggggctggcgggcctca 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048621 tggacgggaacccgctggcggccatcggccccggggccttcgcggggctggcgggcctca 12048680
Query: 775 cgcacctgtcgctgggcggcctgcaggggctcccccagctggcgccccacggcttccggg 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048681 cgcacctgtcgctgggcggcctgcaggggctcccccagctggcgccccacggcttccggg 12048740
Query: 835 agctgcggggcctgcaggtcctggacttgtcaggcaaccccaagctcacgtgggccggag 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048741 agctgcggggcctgcaggtcctggacttgtcaggcaaccccaagctcacgtgggccggag 12048800
Query: 895 ccgaggtgttttcgggcctggactccctgcaggagctggacctgtcgggcacggccctgg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12048801 ccgaggtgttttcgggcctggactccctgcaggagctggacctgtcgggcacggccctgg 12048860
Query: 955 tgcccttgcccgagaagctgctcctccacctgccagcactgcagagcatcagcgtgggtc 1014
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12048861 tgcccttgcccgagaagctgctcctccacctgccagcactgcagagcgtcagcgtgggtc 12048920
Query: 1015 agggcgtgtggtgccggcgcctggtgcggtagggcacctacccccggcagcccggctcca 1074
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12048921 agggcgtgtggtgccggcgcctggtgcgggagggcacctacccccggcagcccggctcca 12048980
Query: 1075 -ccccaaggtggccctgcactgcatagacaccggggaggcggctcctgggggcccggata 1133
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12048981 cccccaaggtggccctgcactgcatagacaccggggagccggctcctgggggcccggata 12049040
Query: 1134 tc 1135
||
Sbjct: 12049041 tc 12049042
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 3 gcccgctccctggccgcccgagtgagcgtgccgaggcggctgcggtacaggcttccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12036776 gcccgctccctggccgcccgagtgagcgtgccgaggcggctgcggtacaggcttccag 12036833
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,768,902
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 2
Length of query: 1135
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1114
Effective length of database: 2,808,413,156
Effective search space: 3128572255784
Effective search space used: 3128572255784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)